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At least 433 records · Page 24Linked to original sources

USGS2006

Guide to the identification of fish protozoan and metazoan parasites in stained tissue sections

The identification of protozoan and metazoan parasites is traditionally carried out using a series of classical keys based upon the morphology of the whole organism. However, in stained tissue sections prepared for light microscopy, taxonomic features will be missing, thus making parasite identification difficult. This work highlights the characteristic features of representative parasites in tissue sections to aid identification. The parasite examples discussed are derived from species affecting finfish, and predominantly include parasites associated with disease or those commonly observed as incidental findings in disease diagnostic cases. Emphasis is on protozoan and small metazoan parasites (such as Myxosporidia) because these are the organisms most likely to be missed or mis-diagnosed during gross examination. Figures are presented in colour to assist biologists and veterinarians who are required to assess host/parasite interactions by light microscopy.

Diseases of Aquatic Organisms↗

USGS2015

Key seabird areas in southern New England identified using a community occupancy model

Seabirds are of conservation concern, and as new potential risks to seabirds are arising, the need to provide unbiased estimates of species’ distributions is growing. We applied community occupancy models to detection/non-detection data collected from repeated aerial strip-transect surveys conducted in 2 large study plots off southern New England, USA; one off the coast of Rhode Island and the other in Nantucket Sound. A total of 17 seabird species were observed at least once in each study plot. We found that detection varied by survey date and effort for most species and the average detection probability across species was less than 0.4. We estimated the influence of water depth, sea surface temperature, and sea surface chl a concentration on species-specific occupancy. Diving species showed large differences between the 2 study plots in their predicted winter distributions, which were largely explained by water depth acting as a stronger predictor of occupancy in Rhode Island than in Nantucket Sound. Conversely, similarities between the 2 study plots in predicted winter distributions of surface-feeding species were explained by sea surface temperature or chlorophyll a concentration acting as predictors of these species’ occupancy in both study plots. We predicted the number of species at each site using the observed data in order to detect ‘hot-spots’ of seabird diversity and use in the 2 study plots. These results provide new information on detection of species, areas of use, and relationships with environmental variables that will be valuable for biologists and planners interested in seabird conservation in the region.

Massachusetts, Rhode Island↗

USGS2017

Manatee grazing impacts on a mixed species seagrass bed

The endangered manatee Trichechus manatus is one of few large grazers in seagrass systems. To assess the long-term impacts of repeated grazing on seagrasses, we selected a study site within Kennedy Space Center in the northern Banana River, Brevard County, Florida, that was typically grazed by large numbers of manatees in spring. Two 13x13 m manatee exclosures and 2 paired open plots of equal size were established at the study site in October 1990. Shoot counts, biomass, and species composition of the co-dominant seagrass species, Syringodium filiforme and Halodule wrightii , were sampled 3 times per year in all 4 plots between October 1990 and October 1994. We used a Bayesian modelling approach, accounting for the influence of depth, to detect treatment (exclosed vs. open) effects. S. filiforme shoot counts, total biomass, and frequency of occurrence significantly increased in the exclosures. By July 1993, mean biomass values in the exclosures (167 g dry wt m -2 ) greatly exceeded those in the open plots (28 g dry wt m -2 ). H. wrightii decreased in the exclosures by 1994. Initially, both S. filiforme and H. wrightii responded positively to release from manatee grazing pressure. As S. filiforme continued to become denser in the exclosures, it gradually replaced H. wrightii . Our findings may be helpful to biologists and managers interested in predicting seagrass recovery and manatee carrying capacity of repeatedly grazed seagrass beds in areas of special significance to manatees and seagrass conservation.

Marine Ecology Progress Series↗

USGS2010

Bald eagle predation on common loon egg

The Common Loon ( Gavia immer ) must defend against many potential egg predators during incubation, including corvids, Herring Gulls ( Larus argentatus ), raccoons ( Procyon lotor ), striped skunk ( Mephitis mephitis ), fisher ( Martes pennanti ), and mink ( Neovison vison ) ( McIntyre 1988 , Evers 2004 , McCann et al. 2005 ). Bald Eagles ( Haliaeetus leucocephalus ) have been documented as predators of both adult Common Loons and their chicks ( Vliestra and Paruk 1997 , Paruk et al. 1999 , Erlandson et al. 2007 , Piper et al. 2008 ). In Wisconsin, where nesting Bald Eagles are abundant (>1200 nesting pairs, >1 young/pair/year), field biologists observed four instances of eagle predation of eggs in loon nests during the period 2002–2004 (M. Meyer pers. comm.). In addition, four cases of eagle predation of incubating adult loons were inferred from evidence found at the loon nest (dozens of plucked adult loon feathers, no carcass remains) and/or loon leg, neck, and skull bones beneath two active eagle nests, including leg bones containing the bands of the nearby (<25 m) incubating adult loon. However, although loon egg predation has been associated with Bald Eagles, predation events have yet to be described in peer-reviewed literature. Here we describe a photographic observation of predation on a Common Loon egg by an immature Bald Eagle as captured by a nest surveillance video camera on Lake Umbagog, a large lake (32 km 2 ) at Umbagog National Wildlife Refuge (UNWR) in Maine.

Maine↗

USGS2010

Perspectives on animal welfare legislation and study considerations for field-oriented studies of raptors in the United States

Concern for the welfare of animals used in research and teaching has increased over the last 50 yr. Animal welfare legislation has resulted in guidelines for the use of animals in research, but the guidelines can be problematic because they focus on animals used in laboratory and agriculture research. Raptor biologists can be constrained by guidelines, restrictions, and oversight that were not intended for field research methods or wild animals in the wild or captivity. Field researchers can be further hampered by not understanding animal welfare legislation, who is subject to oversight, or that oversight is often provided by a committee consisting primarily of scientists who work with laboratory animals. Raptor researchers in particular may experience difficulty obtaining approval due to use of various species-specific trapping and handling methods. We provide a brief review of animal welfare legislation and describe the basic components and responsibilities of an Institutional Animal Care and Use Committee (IACUC) in the United States. We identify topics in raptor research that are especially problematic to obtaining IACUC approval, and we provide insight on how to address these issues. Finally, we suggest that all raptor researchers, regardless of legal requirements, abide by the spirit of the animal welfare principles. Failure to do so may bring about further regulatory and permitting restrictions. ?? 2010 The Raptor Research Foundation, Inc.

Journal of Raptor Research↗

USGS2021

Distilling professional opinion to gauge vulnerability of Guam avifauna to Brown Treesnake predation

The avifauna of Guam was devastated by the introduction of the Brown Treesnake, and the restoration of native birds would need to address the problem with eradication or suppression of BTS. With eradication of the snake unlikely in the near term, and suppression capabilities limited to specific finite areas, key information for reintroductions is how low BTS abundance will likely need to be for each bird species to be re-established based on their vulnerability to BTS predation. Here, we estimate vulnerability, which can no longer be measured directly, so biologists who are familiar with one or more of seven Guam birds were surveyed to obtain their knowledge and produce quantitative vulnerability estimates. As is typical of birds adapted to islands devoid of predators, respondents judged that our focal species exhibit few predator avoidance and tolerance traits, leaving body size as the prime determinant of vulnerability. Respondent opinion also holds that any behavior that reduces the likelihood of an encounter by BTS, e.g., roosting/nesting in palm crowns, cavity nesting, and in particular urban dwelling, substantially reduces vulnerability. Our results can help inform species-specific decisions about when it may be safe to consider the release of birds on Guam depending on the relative vulnerability of each species to predation by BTS.

Guam↗

USGS2021

Impacts of a non-indigenous ecosystem engineer, the American beaver (Castor canadensis), in a biodiversity hotspot

Non-native species having high per capita impacts in invaded communities are those that modulate resource availability and alter disturbance regimes in ways that are biologically incompatible with the native biota. In areas where it has been introduced by humans, American beaver ( Castor canadensis ) is an iconic example of such species due to its capacity to alter trophic dynamics of entire ecosystems and create new invasional pathways for other non-native species. The species is problematic in several watersheds within the Southern California-Northern Baja California Coast Ecoregion, a recognized hotspot of biodiversity, due to its ability to modify habitat in ways that favor invasive predators and competitors over the region's native species and habitat. Beaver was deliberately introduced across California in the mid-1900s and generally accepted as non-native to the region up to the early 2000s; however, articles promoting the idea that beaver may be a natural resident have gained traction in recent years, due in large part to the species' charismatic nature rather than by presentation of sound evidence. Here, we discuss the problems associated with beaver disturbance and its effects on conserving the region's native fauna and flora. We refute arguments underlying the claim that beaver is native to the region, and review paleontological, zooarchaeological, and historical survey data from renowned field biologists and naturalists over the past ~160 years to show that no evidence exists that beaver arrived by any means other than deliberate human introduction. Managing this ecosystem engineer has potential to reduce the richness and abundance of other non-native species because the novel, engineered habitat now supporting these species would diminish in beaver-occupied watersheds. At the same time, hydrologic functionality would shift toward more natural, ephemeral conditions that favor the regions' native species while suppressing the dominance of the most insidious invaders.

California↗

USGS2026

Mass mortality of avian migrants in New Mexico, USA, that coincided with an extreme weather event

Many birds are migratory, and this life history strategy allows for maximized access to seasonally abundant resources and favorable climates. However, migration exposes birds to threats and stressors, resulting in high mortality during migration. Anthropogenic landscape alterations and climate change have intensified threats, and mass mortality events linked to extreme weather are more common in recent decades. Documenting mass mortality is critical for predicting future occurrences and implementing effective conservation. Here, we describe a mortality event that occurred throughout New Mexico, USA in fall 2020. Carcasses began appearing in the region in mid-August, during a period of extreme heat and drought. Following an extreme cold weather event on September 8–9 th , the number of carcasses increased dramatically and expanded throughout the state. In total, we collected 628 carcasses comprising 58 species within Doña Ana and Otero Counties in New Mexico. Necropsy determined emaciation was the cause of death for 74.6% of carcasses. Live birds captured during the period of peak mortality (n = 223) were in similarly poor condition. This event provides a striking example of how multiple types of extreme stressors, in this case widespread drought and unseasonal cold, coincided with a mortality event, indicating a possible synergistic relationship between these factors and the mass mortality. Mortality events are likely to increase in frequency with intensifying climate change. Establishment of networks of biologists and researchers could improve our ability to identify and communicate developing mortality events, organize data collection, and improve understanding of the causes and consequences of mortality.

New Mexico↗

USGS2021

Using decision science for monitoring threatened western snowy plovers to inform recovery

Western Snowy Plovers ( Charadrius nivosus nivosus ) are federally listed under the US Endangered Species Act as Threatened. They occur along the US Pacific coastline and are threatened by habitat loss and destruction and excessive levels of predation and human disturbance. Populations have been monitored since the 1970s for distribution, reproduction, and survival. Since the species was federally listed in 1993 and a recovery plan was approved under the US Fish and Wildlife Service in 2007, recovery actions have resulted in growing populations with increased presence at breeding and wintering sites throughout their Pacific Coast range. This success has created logistical challenges related to monitoring a recovering species and a need for identifying and instituting the best monitoring approach given recovery goals, budgets, and the likelihood of monitoring success. We devised and implemented a structured decision analysis to evaluate nine alternative monitoring strategies. The analysis included inviting plover biologists involved in monitoring to score each strategy according to a suite of performance measures. Using multi-attribute utility theory, we combined scores across the performance measures for each monitoring strategy, and applied weighted utility values to show the implications of tradeoffs and find optimal decisions. We evaluated four scenarios for weighting the monitoring objectives and how risk attitude affects optimal decisions. This resulted in identifying six strategies that best meet recovery needs and were Pareto optimal for cost-effective monitoring. Results were presented to the US Fish and Wildlife Service, responsible for monitoring as well as for consideration to ensure consistent monitoring methods across the species’ range. Our use of structured decision-making can be applied to cases of other species once imperiled but now on the road to recovery.

California, Oregon, Washington↗

USGS2022

Determination of recharge areas that supply decades old groundwater to creeks inhabited by the threatened Okaloosa darter

The Okaloosa darter ( Etheostoma okaloosae ) is a diminutive, perch-like, benthic fish that inhabits only six small, clear, and shallow creek systems that flow almost entirely within Eglin Air Force Base in the panhandle of northwest Florida. Listed as Endangered by the U.S. Fish and Wildlife Service (USFWS) in 1973, improvements in erosion control and habitat restoration led to the Okaloosa darter being downlisted from Endangered to Threatened in 2011. However, the long-term management of the species is hampered by the lack of knowledge of the spatial extent of the recharge areas that ultimately support creek flow through groundwater discharge. To address this lack of data, we collected groundwater samples from the sand and gravel aquifer beneath 11 headwater and 11 downgradient sites across six creek basins during February and December 2020. The groundwater samples were collected from 1 to 1.2 m beneath the creek bottom. Concentrations of sulfur hexafluoride (SF 6 ) were analyzed and used to calculate groundwater age (residence time), and indicated that at the 11 headwater sites, recharge occurred between 11 and 28 years ago. Groundwater ages in downgradient parts of the same creeks indicated that recharge occurred between 5 and 25 years ago. When combined with representative values of hydraulic conductivity for the sand and gravel aquifer, the ages reveal that the extent of the maximum recharge distance from the sampling sites ranged from about 222 to 2011 m from the creeks. This new information can be used by natural resource managers as additional evidence to support the USFWS Recovery Plan and proposed delisting of the Okaloosa darter from the Endangered Species List. Moreover, these results may also be useful to fisheries biologists to incorporate groundwater inputs to facilitate fisheries management.

Florida↗

USGS2024

Chronic wasting disease: State of the science

Chronic wasting disease (CWD) is a prion disease affecting cervid species, both free-ranging and captive populations. As the geographic range continues to expand and disease prevalence continues to increase, CWD will have an impact on cervid populations, local economies, and ecosystem health. Mitigation of this “wicked” disease will require input from many different stakeholders including hunters, landowners, research biologists, wildlife managers, and others, working together. The NC1209 (North American interdisciplinary chronic wasting disease research consortium) is composed of scientists from different disciplines involved with investigating and managing CWD. Leveraging this broad breadth of expertise, the Consortium has created a state-of-the-science review of five key aspects of CWD, including current diagnostic capabilities for detecting prions, requirements for validating these diagnostics, the role of environmental transmission in CWD dynamics, and potential zoonotic risks associated with CWD. The goal of this review is to increase stakeholders’, managers’, and decision-makers’ understanding of this disease informed by current scientific knowledge.

Pathogens↗

USGS2018

Challenges and opportunities developing mathematical models of shared pathogens of domestic and wild animals

Diseases that affect both wild and domestic animals can be particularly difficult to prevent, predict, mitigate, and control. Such multi-host diseases can have devastating economic impacts on domestic animal producers and can present significant challenges to wildlife populations, particularly for populations of conservation concern. Few mathematical models exist that capture the complexities of pathogens, yet development of such models would allow us to estimate and compare the potential effectiveness of management actions for mitigating or suppressing disease in wildlife and/or livestock host populations. We conducted a workshop in March 2014 to identify the challenges associated with developing models of pathogen transmission across the wildlife-livestock interface. The development of mathematical models of pathogen transmission at this interface is hampered by the difficulties associated with describing the host-pathogen systems including: 1) the identity of wildlife hosts, their distributions, and movement patterns, 2) the pathogen transmission pathways between wildlife and domestic animals, 3) the effects of the disease and concomitant mitigation efforts on wild and domestic animal populations, and 4) barriers to communication between sectors. To promote the development of mathematical models of transmission at this interface, we recommend further integration of modern quantitative techniques and improvement of communication among wildlife biologists, mathematical modelers, veterinary medicine professionals, producers, and other stakeholders concerned with the consequences of pathogen transmission at this important, yet poorly understood, interface.

Veterinary Sciences↗

USGS2016

Integrating early detection with DNA barcoding: species identification of a non-native monitor lizard (Squamata: Varanidae) carcass in Mississippi, U.S.A.

Early detection of invasive species is critical to increasing the probability of successful management. At the primary stage of an invasion, invasive species are easier to control as the population is likely represented by just a few individuals. Detection of these first few individuals can be challenging, particularly if they are cryptic or otherwise characterized by low detectability. The engagement of members of the public may be critical to early detection as there are far more citizen s on the landscape than trained biologists. However, it can be difficult to assess the credibility of public reporting, especially when a diagnostic digital image or a physical specimen in good condition are lacking. DNA barcoding can be used for verification when morphological identification of a specimen is not possible or uncertain (i.e., degraded or partial specimen). DNA barcoding relies on obtaining a DNA sequence from a relatively small fragment of mitochondrial DNA and comparing it to a database of sequences containing a variety of expertly identified species. He rein we report the successful identification of a degraded specimen of a non-native, potentially invasive reptile species ( Varanus niloticus ) via DNA barcoding, after discovery and reporting by a member of the public.

Mississippi↗

USGS2025

An early detection rapid response case study of the Black and White Tegu (Salvator merianae) and implications for a broader framework

Documentation of successful early detection rapid response (EDRR) efforts is lacking from the scientific literature but is needed to inform invasive species response protocols. The Black and White tegu (Salvator merianae) has become established in several Florida counties and its spread is of significant conservation concern. It is of high priority for state and federal managers to prevent the spread into sensitive ecosystems, including the Greater Everglades. Thus, coordinated EDRR efforts are essential given limited infrastructure and funding for such tasks. While tegus have been observed along the eastern boundary of Everglades National Park, there has been no evidence tegus are established within Big Cypress National Preserve. On 8 August 2024 an individual tegu was sighted by a U.S. Geological Survey (USGS) biologist in Big Cypress National Preserve who alerted National Park Service (NPS) staff and mobilized a response. Live traps were placed at the location of sighting within 24 hours and an individual tegu was captured on 13 August 2024. The individual tegu was determined to be the same individual that was observed five days early based on color, pattern, and other physical characteristics. No additional tegus were captured. The rapid, coordinated response of NPS and USGS likely contributed to this successful EDRR event, and highlights the need for more expansive EDRR frameworks at multiple jurisdictional scales.

Florida↗

USGS2012

Black-footed ferret digging activity in summer

Black-footed ferrets (Mustela nigripes) excavate soil from prairie dog (Cynomys spp.) burrows, thereby creating characteristic soil deposits at burrow openings. These soil deposits have been observed only rarely in summer. We monitored adult ferrets during June–October of the years 2007 and 2008 on a 452-ha colony of black-tailed prairie dogs (Cynomys ludovicianus) in the Conata Basin, South Dakota. We located and identified ferret excavations during nighttime spotlight surveys for ferrets and daytime sampling of prairie dog burrow openings around locations where ferrets were located via spotlight. We accumulated 48 observations of in-process or recently completed ferret excavations during spotlight surveys (21 in 2007, 27 in 2008) and located 51 diggings during daytime burrow sampling (25 in 2007, 26 in 2008). We located diggings during 5.5% of spotlight observations, most frequently in July–August. These results collectively suggest ferrets may frequently excavate soil in summer, because prairie dogs frequently use soil to plug burrow openings and tunnels in defense against ferrets. Prairie dogs might frequently destroy soil deposits left by ferrets during summer, thereby reducing detection of diggings by biologists.

South Dakota↗

USGS2012

Importance of lunar and temporal conditions for spotlight surveys of adult black-footed ferrets

Black-footed ferrets (Mustela nigripes) spend most daylight hours underground in prairie dog (Cynomys) burrows and exhibit aboveground movements primarily at night. Moonlight can influence the activity patterns of ferrets and, consequently, might influence the efficiency of spotlight surveys used by biologists to monitor ferret populations. We related detection of adult ferrets during postbreeding spotlight surveys to lunar and temporal conditions. We most frequently located ferrets during surveys in which the moon breached the horizon. The data suggested intersexual differences in response to moonlight. We located male ferrets most frequently during nights with greater moon illumination, but we did not detect a correlation between moon illumination and spotlight detection of female ferrets. In general, moonlight could facilitate aboveground navigation by ferrets. However, it seems activity under bright moonlight could be costly for female ferrets while they raise young. Detection of ferrets also varied among months. We detected female ferrets most frequently in August–September, when mothers increase hunting efforts to acquire prey for growing offspring (kits). Detection of adult female ferrets declined in October, when kits were likely independent of their mother. We located male ferrets most frequently in September–October, when males might increase activity to monitor female ferrets and male competitors. Consideration of lunar and temporal influences and standardization of postbreeding surveys could enhance site-specific assessment of reintroduction success and across-site assessment of species recoveiy progress. We suggest that postbreeding surveys for ferrets should be enhanced by concentrating efforts in August–September during moonlit nights when the moon is above the horizon.

Western North American Naturalist↗

USGS2015

Precision of hard structures used to estimate age of mountain Whitefish ( Prosopium williamsoni )

The mountain whitefish ( Prosopium williamsoni ) is a widely distributed salmonid in western North America that has decreased in abundance over portions of its distribution due to anthropogenic disturbances. In this investigation, we examined precision of age estimates derived from scales, pectoral fin rays, and sagittal otoliths from 167 mountain whitefish. Otoliths and pectoral fin rays were mounted in epoxy and cross-sectioned before examination. Scales were pressed onto acetate slides and resulting impressions were examined. Between-reader precision (i.e., between 2 readers), between-reader variability, and reader confidence ratings were compared among hard structures. Coefficient of variation (CV) in age estimates was lowest and percentage of exact agreement (PA-0) was highest for scales (CV = 5.9; PA-0 = 70%) compared to pectoral fin rays (CV =11.0; PA-0 = 58%) and otoliths (CV = 12.3; PA-0 = 55%). Median confidence ratings were significantly different ( P ≤ 0.05) among all structures, with scales having the highest median confidence. Reader confidence decreased with fish age for scales and pectoral fin rays, but reader confidence increased with fish age for otoliths. In general, age estimates were more precise and reader confidence was higher for scales compared to pectoral fin rays and otoliths. This research will help fisheries biologists in selecting the most appropriate hard structure to use for future age and growth studies on mountain whitefish. In turn, selection of the most precise hard structure will lead to better estimates of dynamic rate functions.

Western North American Naturalist↗

USGS2016

Sagebrush, greater sage-grouse, and the occurrence and importance of forbs

Big sagebrush ( Artemisia tridentata Nutt.) ecosystems provide habitat for sagebrush-obligate wildlife species such as the Greater Sage-Grouse ( Centrocercus urophasianus ). The understory of big sagebrush plant communities is composed of grasses and forbs that are important sources of cover and food for wildlife. The grass component is well described in the literature, but the composition, abundance, and habitat role of forbs in these communities is largely unknown. Our objective was to synthesize information about forbs and their importance to Greater Sage-Grouse diets and habitats, how rangeland management practices affect forbs, and how forbs respond to changes in temperature and precipitation. We also sought to identify research gaps and needs concerning forbs in big sagebrush plant communities. We searched for relevant literature including journal articles and state and federal agency reports. Our results indicated that in the spring and summer, Greater Sage-Grouse diets consist of forbs (particularly species in the Asteraceae family), arthropods, and lesser amounts of sagebrush. The diets transition to sagebrush in fall and winter. Forbs provide cover for Greater Sage-Grouse individuals at their lekking, nesting, and brood-rearing sites, and the species has a positive relationship with arthropod presence. The effect of grazing on native forbs may be compounded by invasion of nonnative species and differs depending on grazing intensity. The effect of fire on forbs varies greatly and may depend on time elapsed since burning. In addition, chemical and mechanical treatments affect annual and perennial forbs differently. Temperature and precipitation influence forb phenology, biomass, and abundance differently among species. Our review identified several uncertainties and research needs about forbs in big sagebrush ecosystems. First, in many cases the literature about forbs is reported only at the genus or functional type level. Second, information about forb composition and abundance near lekking sites is limited, despite the fact that lekking sites are an important center of Greater Sage-Grouse activity. Third, there is little published literature on the relationship between forbs and precipitation and between forbs and temperature, thereby limiting our ability to understand potential responses of forbs to climate change. While there is wide agreement among Greater Sage-Grouse biologists that forbs are an important habitat component, our knowledge about the distribution and environmental responses of forb species in big sagebrush plant communities is limited. Our work for the first time synthesizes the current knowledge regarding forbs in sagebrush ecosystems and their importance for Greater Sage-Grouse and identifies additional research needs for effective conservation and management.

Western North American Naturalist↗