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At least 433 records · Page 24Linked to original sources
USGS2015

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

Wildlife managers can more easily mitigate the effects of invasive species if action takes place before a population becomes established. Such early detection requires sensitive survey tools that can detect low numbers of individuals. Due to their high sensitivity, environmental DNA (eDNA) surveys hold promise as an early detection method for aquatic invasive species. Quantification of eDNA amounts may also provide data on species abundance and timing of an organism’s presence, allowing managers to successfully combat the spread of ecologically damaging species. To better understand the link between eDNA and an organism’s presence, it is crucial to know how eDNA is shed into the environment. Our study used quantitative PCR (qPCR) and controlled laboratory experiments to measure the amount of eDNA that two species of invasive bigheaded carps ( Hypophthalmichthys nobilis and Hypophthalmichthys molitrix ) shed into the water. We first measured how much eDNA a single fish sheds and the variability of these measurements. Then, in a series of manipulative lab experiments, we studied how temperature, biomass (grams of fish), and diet affect the shedding rate of eDNA by these fish. We found that eDNA amounts exhibit a positive relationship with fish biomass, and that feeding could increase the amount of eDNA shed by ten-fold, whereas water temperature did not have an effect. Our results demonstrate that quantification of eDNA may be useful for predicting carp density, as well as densities of other rare or invasive species.

Biological Conservation↗
USGS2015

The effect of dilution and the use of a post-extraction nucleic acid purification column on the accuracy, precision, and inhibition of environmental DNA samples

Isolation of environmental DNA (eDNA) is an increasingly common method for detecting presence and assessing relative abundance of rare or elusive species in aquatic systems via the isolation of DNA from environmental samples and the amplification of species-specific sequences using quantitative PCR (qPCR). Co-extracted substances that inhibit qPCR can lead to inaccurate results and subsequent misinterpretation about a species’ status in the tested system. We tested three treatments (5-fold and 10-fold dilutions, and spin-column purification) for reducing qPCR inhibition from 21 partially and fully inhibited eDNA samples collected from coastal plain wetlands and mountain headwater streams in the southeastern USA. All treatments reduced the concentration of DNA in the samples. However, column purified samples retained the greatest sensitivity. For stream samples, all three treatments effectively reduced qPCR inhibition. However, for wetland samples, the 5-fold dilution was less effective than other treatments. Quantitative PCR results for column purified samples were more precise than the 5-fold and 10-fold dilutions by 2.2× and 3.7×, respectively. Column purified samples consistently underestimated qPCR-based DNA concentrations by approximately 25%, whereas the directional bias in qPCR-based DNA concentration estimates differed between stream and wetland samples for both dilution treatments. While the directional bias of qPCR-based DNA concentration estimates differed among treatments and locations, the magnitude of inaccuracy did not. Our results suggest that 10-fold dilution and column purification effectively reduce qPCR inhibition in mountain headwater stream and coastal plain wetland eDNA samples, and if applied to all samples in a study, column purification may provide the most accurate relative qPCR-based DNA concentrations estimates while retaining the greatest assay sensitivity.

Biological Conservation↗
USGS2015

Activity-specific ecological niche models for planning reintroductions of California condors (Gymnogyps californianus)

Ecological niche models can be a useful tool to identify candidate reintroduction sites for endangered species but have been infrequently used for this purpose. In this paper, we (1) develop activity-specific ecological niche models (nesting, roosting, and feeding) for the critically endangered California condor ( Gymnogyps californianus ) to aid in reintroduction planning in California, Oregon, and Washington, USA, (2) test the accuracy of these models using empirical data withheld from model development, and (3) integrate model results with information on condor movement ecology and biology to produce predictive maps of reintroduction site suitability. Our approach, which disentangles niche models into activity-specific components, has applications for other species where it is routinely assumed (often incorrectly) that individuals fulfill all requirements for life within a single environmental space. Ecological niche models conformed to our understanding of California condor ecology, had good predictive performance when tested with data withheld from model development, and aided in the identification of several candidate reintroduction areas outside of the current distribution of the species. Our results suggest there are large unoccupied regions of the California condor’s historical range that have retained ecological features similar to currently occupied habitats, and thus could be considered for future reintroduction efforts. Combining our activity-specific ENMs with ground reconnaissance and information on other threat factors that could not be directly incorporated into empirical ENMs will ultimately improve our ability to select successful reintroduction sites for the California condor.

California, Oregon, Washington↗
USGS2015

Heterogeneous movement of insectivorous Amazonian birds through primary and secondary forest: A case study using multistate models with radiotelemetry data

Given rates of deforestation, disturbance, and secondary forest accumulation in tropical rainforests, there is a great need to quantify habitat use and movement among different habitats. This need is particularly pronounced for animals most sensitive to disturbance, such as insectivorous understory birds. Here we use multistate capture–recapture models with radiotelemetry data to determine the successional stage at which within-day movement probabilities of Amazonian birds in secondary forest are similar to those in primary forest. We radio-tracked three common understory insectivore species in primary and secondary forest at the Biological Dynamics of Forest Fragments project near Manaus, Brazil: two woodcreepers, Glyphorynchus spirurus ( n = 19) and Xiphorhynchus pardalotus ( n = 18), and the terrestrial antthrush Formicarius colma ( n = 19 ) . Forest age was a strong predictor of fidelity to a given habitat. All three species showed greater fidelity to primary forest than to 8–14-year-old secondary forest, indicating the latter’s relatively poor quality. The two woodcreeper species used 12–18-year-old secondary forest in a manner comparable to continuous forest, but F . colma avoided moving even to 27–31-year-old secondary forest—the oldest at our site. Our results suggest that managers concerned with less sensitive species can assume that forest reserves connected by 12–18-year-old secondary forest corridors are effectively connected. On the other hand, >30 years are required after land abandonment before secondary forest serves as a primary forest-like conduit for movement by F . colma ; more sensitive terrestrial insectivores may take longer still.

Manaus↗
USGS2015

Avoidance of unconventional oil wells and roads exacerbates habitat loss for grassland birds in the North American great plains

Oil development in the Bakken shale region has increased rapidly as a result of new technologies and strong demand for fossil fuel. This region also supports a particularly high density and diversity of grassland bird species, which are declining across North America. We examined grassland bird response to unconventional oil extraction sites (i.e. developed with hydraulic fracturing and horizontal drilling techniques) and associated roads in North Dakota. Our goal was to quantify the amount of habitat that was indirectly degraded by oil development, as evidenced by patterns of avoidance by birds. Grassland birds avoided areas within 150 m of roads (95% CI: 87–214 m), 267 m of single-bore well pads (95% CI: 157–378 m), and 150 m of multi-bore well pads (95% CI: 67–233 m). Individual species demonstrated variable tolerance of well pads. Clay-colored sparrows ( Spizella pallida ) were tolerant of oil-related infrastructure, whereas Sprague's pipit ( Anthus spragueii ) avoided areas within 350 m (95% CI: 215–485 m) of single-bore well pads. Given these density patterns around oil wells, the potential footprint of any individual oil well, and oil development across the region, is greatly multiplied for sensitive species. Efforts to reduce new road construction, concentrate wells along developed corridors, combine numerous wells on multi-bore pads rather than build many single-bore wells, and to place well pads near existing roads will serve to minimize loss of suitable habitat for birds. Quantifying environmental degradation caused by oil development is a critical step in understanding how to better mitigate harm to wildlife populations.

Biological Conservation↗
USGS2015

The rapid return of marine-derived nutrients to a freshwater food web following dam removal

Dam removal is increasingly being recognized as a viable river restoration action. Although the main beneficiaries of restored connectivity are often migratory fish populations, little is known regarding recovery of other parts of the freshwater food web, particularly terrestrial components. We measured stable isotopes in key components to the freshwater food web: salmon, freshwater macroinvertebrates and a river specialist bird, American dipper ( Cinclus mexicanus ), before and after removal of the Elwha Dam, WA, USA. Less than a year after dam removal, salmon returned to the system and released marine-derived nutrients (MDN). In that same year we documented an increase in stable-nitrogen and carbon isotope ratios in American dippers. These results indicate that MDN from anadromous fish, an important nutrient subsidy that crosses the aquatic–terrestrial boundary, can return rapidly to food webs after dams are removed which is an important component of ecosystem recovery.

Washington↗
USGS2015

Book review: Bats: A world of science and mystery.

This book has something for everyone, from casual seekers of fascinating eye candy to professional scientists interested in the latest discoveries. Without losing sight of how mysterious bats remain despite decades of research, the authors deftly introduce readers to bats and the people who study them. The book is nice to look at, easy to understand, and interesting in many ways. These stories stick in the reader's memory long after being read—a sign of great scientific communication. Review info: Bats: A world of science and mystery. By M. Brock Fenton, Nancy B. Simmons (Eds.), 2015. ISBN 978-0226065120, 240 pp.

Biological Conservation↗
USGS2016

Migratory corridors of adult female Kemp’s ridley turtles in the Gulf of Mexico

For many marine species, locations of migratory pathways are not well defined. We used satellite telemetry and switching state-space modeling (SSM) to define the migratory corridor used by Kemp's ridley turtles (Lepidochelys kempii) in the Gulf of Mexico. The turtles were tagged after nesting at Padre Island National Seashore, Texas, USA from 1997 to 2014 (PAIS; n = 80); Rancho Nuevo, Tamaulipas, Mexico from 2010 to 2011 (RN; n = 14); Tecolutla, Veracruz, Mexico from 2012 to 2013 (VC; n = 13); and Gulf Shores, Alabama, USA during 2012 (GS; n = 1). The migratory corridor lies in nearshore Gulf of Mexico waters in the USA and Mexico with mean water depth of 26 m and a mean distance of 20 km from the nearest mainland coast. Migration from the nesting beach is a short phenomenon that occurs from late-May through August, with a peak in June. There was spatial similarity of post-nesting migratory pathways for different turtles over a 16 year period. Thus, our results indicate that these nearshore Gulf waters represent a critical migratory habitat for this species. However, there is a gap in our understanding of the migratory pathways used by this and other species to return from foraging grounds to nesting beaches. Therefore, our results highlight the need for tracking reproductive individuals from foraging grounds to nesting beaches. Continued tracking of adult females from PAIS, RN, and VC nesting beaches will allow further study of environmental and bathymetric components of migratory habitat and threats occurring within our defined corridor. Furthermore, the existence of this migratory corridor in nearshore waters of both the USA and Mexico demonstrates that international cooperation is necessary to protect essential migratory habitat for this imperiled species.

Gulf of Mexico↗
USGS2016

Understanding environmental DNA detection probabilities: A case study using a stream-dwelling char Salvelinus fontinalis

Environmental DNA sampling (eDNA) has emerged as a powerful tool for detecting aquatic animals. Previous research suggests that eDNA methods are substantially more sensitive than traditional sampling. However, the factors influencing eDNA detection and the resulting sampling costs are still not well understood. Here we use multiple experiments to derive independent estimates of eDNA production rates and downstream persistence from brook trout ( Salvelinus fontinalis ) in streams. We use these estimates to parameterize models comparing the false negative detection rates of eDNA sampling and traditional backpack electrofishing. We find that using the protocols in this study eDNA had reasonable detection probabilities at extremely low animal densities (e.g., probability of detection 0.18 at densities of one fish per stream kilometer) and very high detection probabilities at population-level densities (e.g., probability of detection > 0.99 at densities of ≥ 3 fish per 100 m). This is substantially more sensitive than traditional electrofishing for determining the presence of brook trout and may translate into important cost savings when animals are rare. Our findings are consistent with a growing body of literature showing that eDNA sampling is a powerful tool for the detection of aquatic species, particularly those that are rare and difficult to sample using traditional methods.

Montana↗
USGS2016

Impacts of climate change and renewable energy development on habitat of an endemic squirrel, Xerospermophilus mohavensis , in the Mojave Desert, USA

Predicting changes in species distributions under a changing climate is becoming widespread with the use of species distribution models (SDMs). The resulting predictions of future potential habitat can be cast in light of planned land use changes, such as urban expansion and energy development to identify areas with potential conflict. However, SDMs rarely incorporate an understanding of dispersal capacity, and therefore assume unlimited dispersal in potential range shifts under uncertain climate futures. We use SDMs to predict future distributions of the Mojave ground squirrel, Xerospermophilus mohavensis Merriam, and incorporate partial dispersal models informed by field data on juvenile dispersal to assess projected impact of climate change and energy development on future distributions of X. mohavensis . Our models predict loss of extant habitat, but also concurrent gains of new habitat under two scenarios of future climate change. Under the B1 emissions scenario- a storyline describing a convergent world with emphasis on curbing greenhouse gas emissions- our models predicted losses of up to 64% of extant habitat by 2080, while under the increased greenhouse gas emissions of the A2 scenario, we suggest losses of 56%. New potential habitat may become available to X. mohavensis , thereby offsetting as much as 6330 km 2 (50%) of the current habitat lost. Habitat lost due to planned energy development was marginal compared to habitat lost from changing climates, but disproportionately affected current habitat. Future areas of overlap in potential habitat between the two climate change scenarios are identified and discussed in context of proposed energy development.

California↗
USGS2016

Future frequencies of extreme weather events in the National Wildlife Refuges of the conterminous U.S.

Climate change is a major challenge for managers of protected areas world-wide, and managers need information about future climate conditions within protected areas. Prior studies of climate change effects in protected areas have largely focused on average climatic conditions. However, extreme weather may have stronger effects on wildlife populations and habitats than changes in averages. Our goal was to quantify future changes in the frequency of extreme heat, drought, and false springs, during the avian breeding season, in 415 National Wildlife Refuges in the conterminous United States. We analyzed spatially detailed data on extreme weather frequencies during the historical period (1950–2005) and under different scenarios of future climate change by mid- and late-21st century. We found that all wildlife refuges will likely experience substantial changes in the frequencies of extreme weather, but the types of projected changes differed among refuges. Extreme heat is projected to increase dramatically in all wildlife refuges, whereas changes in droughts and false springs are projected to increase or decrease on a regional basis. Half of all wildlife refuges are projected to see increases in frequency (> 20% higher than the current rate) in at least two types of weather extremes by mid-century. Wildlife refuges in the Southwest and Pacific Southwest are projected to exhibit the fastest rates of change, and may deserve extra attention. Climate change adaptation strategies in protected areas, such as the U.S. wildlife refuges, may need to seriously consider future changes in extreme weather, including the considerable spatial variation of these changes.

Biological Conservation↗
USGS2016

Global biodiversity monitoring: from data sources to essential biodiversity variables

Essential Biodiversity Variables (EBVs) consolidate information from varied biodiversity observation sources. Here we demonstrate the links between data sources, EBVs and indicators and discuss how different sources of biodiversity observations can be harnessed to inform EBVs. We classify sources of primary observations into four types: extensive and intensive monitoring schemes, ecological field studies and satellite remote sensing. We characterize their geographic, taxonomic and temporal coverage. Ecological field studies and intensive monitoring schemes inform a wide range of EBVs, but the former tend to deliver short-term data, while the geographic coverage of the latter is limited. In contrast, extensive monitoring schemes mostly inform the population abundance EBV, but deliver long-term data across an extensive network of sites. Satellite remote sensing is particularly suited to providing information on ecosystem function and structure EBVs. Biases behind data sources may affect the representativeness of global biodiversity datasets. To improve them, researchers must assess data sources and then develop strategies to compensate for identified gaps. We draw on the population abundance dataset informing the Living Planet Index (LPI) to illustrate the effects of data sources on EBV representativeness. We find that long-term monitoring schemes informing the LPI are still scarce outside of Europe and North America and that ecological field studies play a key role in covering that gap. Achieving representative EBV datasets will depend both on the ability to integrate available data, through data harmonization and modeling efforts, and on the establishment of new monitoring programs to address critical data gaps.

Biological Conservation↗
USGS2016

Space use of a dominant Arctic vertebrate: Effects of prey, sea ice, and land on Pacific walrus resource selection

Sea ice dominates marine ecosystems in the Arctic, and recent reductions in sea ice may alter food webs throughout the region. Sea ice loss may also stress Pacific walruses ( Odobenus rosmarus divergens ), which feed on benthic macroinvertebrates in the Bering and Chukchi seas. However, no studies have examined the effects of sea ice on foraging Pacific walrus space use patterns. We tested a series of hypotheses that examined walrus foraging resource selection as a function of proximity to resting substrates and prey biomass. We quantified walrus prey biomass with 17 benthic invertebrate families, which included bivalves, polychaetes, amphipods, tunicates, and sipunculids. We included covariates for distance to sea ice and distance to land, and systematically developed a series of candidate models to examine interactions among benthic prey biomass and resting substrates. We ranked candidate models with Bayesian Information Criterion and made inferences on walrus resource selection based on the top-ranked model. Based on the top model, biomass of the bivalve family Tellinidae, distance to ice, distance to land, and the interaction of distances to ice and land all positively influenced walrus foraging resource selection. Standardized model coefficients indicated that distance to ice explained the most variation in walrus foraging resource selection followed by Tellinidae biomass. Distance to land and the interaction of distances to ice and land accounted for similar levels of variation. Tellinidae biomass likely represented an index of overall bivalve biomass, indicating walruses focused foraging in areas with elevated levels of bivalve and tellinid biomass. Our results also emphasize the importance of sea ice to walruses. Projected sea ice loss will increase the duration of the open water season in the Chukchi Sea, altering the spatial distribution of resting sites relative to current foraging areas and possibly affecting the spatial structure of benthic communities.

Alaska↗
USGS2017

Rapid response for invasive waterweeds at the arctic invasion front: Assessment of collateral impacts from herbicide treatments

The remoteness of subarctic and arctic ecosystems no longer protects against invasive species introductions. Rather, the mix of urban hubs surrounded by undeveloped expanses creates a ratchet process whereby anthropogenic activity is sufficient to introduce and spread invaders, but for which the costs of monitoring and managing remote ecosystems is prohibitive. Elodea spp. is the first aquatic invasive plant to become established in Alaska and has potential for widespread deleterious ecological and economic impacts. A rapid eradication response with herbicides has been identified as a priority invasion control strategy. We condu cted a multi-lake monitoring effort to assess collateral impacts from herbicide treatment for Elodea in high latitude systems. Variability in data was driven by seasonal dynamics and natural lake-to-lake differences typical of high latitude waterbodies, indicating lack of evidence for systematic impacts to water quality or plankton communities associated with herbicide treatment of Elodea . Impacts on native macrophytes were benign with the exception of some evidence for earlier onset of leaf senescence for lily pads( Nuphar spp.) in treated lakes. We observed a substantial increase in detected native flora richness after Elodea was eradicated from the most heavily infested lake, indicating potential for retention of native macrophyte communities if infestations are addressed quickly. While avoiding introductions through prevention may be the most desirable outcome, these applications indicated low risks of non-target impacts associated with herbicide treatment as a rapid response option for Elodea in high latitude systems.

Alaska↗
USGS2017

Declines revisited: Long-term recovery and spatial population dynamics oftailed frog larvae after wildfire

Drought has fueled an increased frequency and severity of large wildfires in many ecosystems. Despite an increase in research on wildfire effects on vertebrates, the vast majority of it has focused on short-term (< 5 years) effects and there is still little information on the time scale of population recovery for species that decline in abundance after fire. In 2003, a large wildfire in Montana (USA) burned the watersheds of four of eight streams that we sampled for larval Rocky Mountain tailed frogs ( Ascaphus montanus ) in 2001. Surveys during 2004–2005 revealed reduced abundance of larvae in burned streams relative to unburned streams, with greater declines associated with increased fire extent. Rocky Mountain tailed frogs have low vagility and have several unusual life-history traits that could slow population recovery, including an extended larval period (4 years), delayed sexual maturity (6–8 years), and low fecundity (< 50 eggs/year). To determine if abundance remained depressed since the 2003 wildfire, we repeated surveys during 2014–2015 and found relative abundance of larvae in burned and unburned streams had nearly converged to pre-fire conditions within two generations. The negative effects of burn extent on larval abundance weakened> 58% within 12 years after the fire. We also found moderate synchrony among populations in unburned streams and negative spatial autocorrelation among populations in burned streams. We suspect negative spatial autocorrelation among spatially-clustered burned streams reflected increased post-fire patchiness in resources and different rates of local recovery. Our results add to a growing body of work that suggests populations in intact ecosystems tend to be resilient to habitat changes caused by wildfire. Our results also provide important insights into recovery times of populations that have been negatively affected by severe wildfire.

Montana↗
USGS2017

Secondary invasions of noxious weeds associated with control of invasive Tamarix are frequent, idiosyncratic and persistent

Control of invasive species within ecosystems may induce secondary invasions of non-target invaders replacing the first alien. We used four plant species listed as noxious by local authorities in riparian systems to discern whether 1) the severity of these secondary invasions was related to the control method applied to the first alien; and 2) which species that were secondary invaders persisted over time. In a collaborative study by 16 research institutions, we monitored plant species composition following control of non-native Tamarix trees along southwestern U.S. rivers using defoliation by an introduced biocontrol beetle, and three physical removal methods: mechanical using saws, heavy machinery, and burning in 244 treated and 79 untreated sites across six U.S. states. Physical removal favored secondary invasions immediately after Tamarix removal (0–3 yrs.), while in the biocontrol treatment, secondary invasions manifested later (> 5 yrs.). Within this general trend, the response of weeds to control was idiosyncratic; dependent on treatment type and invader. Two annual tumbleweeds that only reproduce by seed (Bassia scoparia and Salsola tragus) peaked immediately after physical Tamarix removal and persisted over time, even after herbicide application. Acroptilon repens, a perennial forb that vigorously reproduces by rhizomes, and Bromus tectorum, a very frequent annual grass before removal that only reproduces by seed, were most successful at biocontrol sites, and progressively spread as the canopy layer opened. These results demonstrate that strategies to control Tamarix affect secondary invasions differently among species and that time since disturbance is an important, generally overlooked, factor affecting response.

Colorado River, Rio Grande River↗
USGS2017

Relative influences of climate change and human activity on the onshore distribution of polar bears

Climate change is altering habitat for many species, leading to shifts in distributions that can increase levels of human-wildlife conflict. To develop effective strategies for minimizing human-wildlife conflict, we must understand the relative influences that climate change and other factors have on wildlife distributions. Polar bears (Ursus maritimus) are increasingly using land during summer and autumn due to sea ice loss, leading to higher incidents of conflict and concerns for human safety. We sought to understand the relative influence of sea ice conditions, onshore habitat characteristics, and human-provisioned food attractants on the distribution and abundance of polar bears while on shore. We also wanted to determine how mitigation measures might reduce human-polar bear conflict associated with an anthropogenic food source. We built a Bayesian hierarchical model based on 14 years of aerial survey data to estimate the weekly number and distribution of polar bears on the coast of northern Alaska in autumn. We then used the model to predict how effective two management options for handling subsistence-harvested whale remains in the community of Kaktovik, Alaska might be. The distribution of bears on shore was most strongly influenced by the presence of whale carcasses and to a lesser extent sea ice and onshore habitat conditions. The numbers of bears on shore were related to sea ice conditions. The two management strategies for handling the whale carcasses reduced the estimated number of bears near Kaktovik by > 75%. By considering multiple factors associated with the onshore distribution and abundance of polar bears we discerned what role human activities played in where bears occur and how successful efforts to manage the whale carcasses might be for reducing human-polar bear conflict.

Alaska↗
USGS2017

Factors associated with bat mortality at wind energy facilities in the United States

Hundreds of thousands of bats are killed annually by colliding with wind turbines in the U.S., yet little is known about factors causing variation in mortality across wind energy facilities. We conducted a quantitative synthesis of bat collision mortality with wind turbines by reviewing 218 North American studies representing 100 wind energy facilities. This data set, the largest compiled for bats to date, provides further evidence that collision mortality is greatest for migratory tree-roosting species (Hoary Bat [ Lasiurus cinereus ], Eastern Red Bat [ Lasiurus borealis ], Silver-haired Bat [ Lasionycteris noctivagans ]) and from July to October. Based on 40 U.S. studies meeting inclusion criteria and analyzed under a common statistical framework to account for methodological variation, we found support for an inverse relationship between bat mortality and percent grassland cover surrounding wind energy facilities. At a national scale, grassland cover may best reflect openness of the landscape, a factor generally associated with reduced activity and abundance of tree-roosting species that may also reduce turbine collisions. Further representative sampling of wind energy facilities is required to validate this pattern. Ecologically informed placement of wind energy facilities involves multiple considerations, including not only factors associated with bat mortality, but also factors associated with bird collision mortality, indirect habitat-related impacts to all species, and overall ecosystem impacts.

Biological Conservation↗