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Defining opportunities for collaboration across data life cycles

Monitoring natural resources - water, forests, and animal populations—is required to support effective management of natural resources. However, because monitoring activities are often specific to a discipline, issue, or agency, it is typically difficult to integrate data to answer questions that transcend geopolitical and jurisdictional boundaries. How do we reach the better data integration we need?

Eos, Transactions, American Geophysical Union↗

Using macroinvertebrates to identify biota-land cover optima at multiple scales in the Pacific Northwest, USA

Macroinvertebrate assemblages and environmental variables were evaluated at 45 stream sites throughout the Puget Sound Basin, Washington, USA. Environmental variables were measured at 3 spatial scales: reach, local, and whole watershed. Macroinvertebrate distributions were related to environmental variables using canonical correspondence analysis to determine which variables and spatial scales best explained the observed community composition and to identify biota-land cover optima. The calculation of a biota-land cover optimum was a 2-step process. First, an individual taxon's optimum was estimated for a particular land cover by weighting the mean value for that land cover by the abundance of that taxon at all sites. Second, the biota-land cover optimum was determined as the point at which the greatest numbers of taxa, at their calculated optima, appeared for a particular land cover. Sampling reaches were located on streams in watersheds with varying levels of forest, agriculture, and urban/suburban land cover that represented the full range of physical conditions typically found in Puget Sound streams. At the reach scale, taxa composition was correlated with conductivity and mean velocity. At the local and whole-watershed scales, taxa composition was correlated with % forest and agricultural land cover and % forest and bedrock land cover, respectively. For all of the scales, the dominant environmental variables represented an anthropogenic gradient. There was little difference in the amount of variability explained by each spatial scale. At the local-watershed scale, a biota-land cover optimum of ???80 to 90% forest land cover was identified. The total number of taxa at their optima declined rapidly as forest land cover within the local scale declined below 80 to 90%. At the whole-watershed scale, a biota-land cover optimum of 70 to 80% forest land cover was identified. The total number of taxa at their optima declined rapidly as forest land cover within the whole watershed declined below 70 to 80%. Our results suggest that macroinvertebrates can be used both as quantitative indicators of environmental conditions at multiple scales and indicators of land cover optima. Further examination of these optima could be used to establish priorities for conservation and restoration efforts.

Journal of the North American Benthological Societ↗

Application of a rule-based model to estimate mercury exchange for three background biomes in the continental United States

Ecosystems that have low mercury (Hg) concentrations (i.e., not enriched or impactedbygeologic or anthropogenic processes) cover most of the terrestrial surface area of the earth yet their role as a net source or sink for atmospheric Hg is uncertain. Here we use empirical data to develop a rule-based model implemented within a geographic information system framework to estimate the spatial and temporal patterns of Hg flux for semiarid deserts, grasslands, and deciduous forests representing 45% of the continental United States. This exercise provides an indication of whether these ecosystems are a net source or sink for atmospheric Hg as well as a basis for recommendation of data to collect in future field sampling campaigns. Results indicated that soil alone was a small net source of atmospheric Hg and that emitted Hg could be accounted for based on Hg input by wet deposition. When foliar assimilation and wet deposition are added to the area estimate of soil Hg flux these biomes are a sink for atmospheric Hg. ?? 2009 American Chemical Society.

Environmental Science & Technology↗

The effect of coachwhip presence on body size of North American racers suggests competition between these sympatric snakes

When sympatric species compete, character divergence may help maintain coexistence. Snakes are often found in species-rich assemblages while exploiting similar resources; because snake body size is a relatively plastic trait that determines the range of prey sizes an individual may consume, divergence in body size between sympatric species may arise as a result of interspecific interactions. The North American racer, Coluber constrictor, and the larger coachwhip, Coluber flagellum, have a close taxonomic relationship and similar foraging strategies. Therefore, we hypothesized that C. constrictor would be smaller where they co-occur with C. flagellum, as compared to where C. flagellum is absent, throughout the southeastern extent of their range. To evaluate this hypothesis, we obtained data on body size for 2321 adult C. constrictor and 526 adult C. flagellum, along with habitat data and other potentially important factors influencing body size. Coluber constrictor was smaller than elsewhere when in peninsular Florida, in pine forests, on hydric soils and in the presence of the larger and potentially competing C. flagellum. Body size of C. flagellum did not vary by any measured habitat variables. The trends we documented are consistent with the hypothesis that C. constrictor body size is influenced by several variables, including co-occurrence with C. flagellum.

Alabama;Florida;Georgia;Louisiana;Mississippi;Sout↗

Modeling anuran detection and site occupancy on North American Amphibian Monitoring Program (NAAMP) routes in Maryland

One of the most fundamental problems in monitoring animal populations is that of imperfect detection. Although imperfect detection can be modeled, studies examining patterns in occurrence often ignore detection and thus fail to properly partition variation in detection from that of occurrence. In this study, we used anuran calling survey data collected on North American Amphibian Monitoring Program routes in eastern Maryland to investigate factors that influence detection probability and site occupancy for 10 anuran species. In 2002, 17 calling survey routes in eastern Maryland were surveyed to collect environmental and species data nine or more times. To analyze these data, we developed models incorporating detection probability and site occupancy. The results suggest that, for more than half of the 10 species, detection probabilities vary most with season (i.e., day-of-year), air temperature, time, and moon illumination, whereas site occupancy may vary by the amount of palustrine forested wetland habitat. Our results suggest anuran calling surveys should document air temperature, time of night, moon illumination, observer skill, and habitat change over time, as these factors can be important to model-adjusted estimates of site occupancy. Our study represents the first formal modeling effort aimed at developing an analytic assessment framework for NAAMP calling survey data.

Maryland↗

Trends in the nutrient enrichment of U.S. rivers during the late 20th century and their relation to changes in probable stream trophic conditions

We estimated trends in concentrations of total phosphorus (TP) and total nitrogen (TN) and the related change in the probabilities of trophic conditions from 1975 to 1994 at 250 nationally representative riverine monitoring locations in the U.S. with drainage areas larger than about 1,000 km2. Statistically significant (p < 0.05) declines were detected in TP and TN concentrations at 44% and 37% of the monitoring sites, and significant increases were detected at 3% and 9% of the sites, respectively. We used a statistical model to assess changes in the probable trophic-state classification of the sites after adjusting for climate-related variability in nutrient concentrations. The probabilistic assessment accounts for current knowledge of the trophic response of streams to nutrient enrichment, based on a recently proposed definition of "eutrophic," "mesotrophic," and "oligotrophic" conditions in relation to total nutrient concentrations. Based on these trophic definitions, we found that the trophic state improved at 25% of the monitoring sites and worsened at fewer than 5% of the sites; about 70% of the sites were unchanged. Improvements in trophic-state related to declines in TP were more common in predominantly forested and shrub-grassland watersheds, whereas the trophic state of predominantly agricultural sites was unchanged. Despite the declines in TP concentrations at many sites, about 50% of all monitoring sites, and more than 60% of the sites in predominantly agricultural and urban watersheds, were classified as eutrophic in 1994 based on TP concentrations. Contemporaneous reductions in major nutrient sources to streams, related to wastewater treatment upgrades, phosphate detergent bans, and declines in some agricultural sources, may have contributed to the declines in riverine nutrient concentrations and associated improvements in trophic conditions. ?? 2006, by the American Society of Limnology and Oceanography, Inc.

Conference Paper↗

Pliocene-climate history of the western United States derived from lacustrine ostracodes

Pliocene sediments from several sites in western North America contain ostracodes indicating deposition in lacustrine and wetland settings. The ostracodes offer a means of reconstructing the aquatic paleoenvironment. Because water temperature, chemistry, and lake volume are coupled to climate, reconstruction of these parameters provides a direct insight into Pliocene climate. The site ages were determined from tephrochronology, paleomagnetics, and associated mammals. The morphology of many ostracode species also provides direct information about the paleoenvironment in which they lived. During the Pliocene (about 3.5-2.5 Ma) some species have unusually ornate carapace morphology indicative of large geologically stable lakes, which must have required a stable climate to sustain them. North American Pliocene climate changed from a modern-like state 4.5-3.5 Ma to a period with greater precipitation and less evaporation than today, 3.5-2.5 Ma. This wetter period, inferred from the large geologically long-lived lakes, implies a stable atmospheric circulation pattern. The stable circulation pattern collapsed around 2.5 Ma and climate returned to a modern-like situation.

western United States↗

Streams in Catskill Mountains still susceptible to acid rain

Precipitation in North America has become less acidic over the past 2 decades because of reduced power plant emissions and compliance with the Clean Air Act Amendments [ Sirois , 19937rsqb;. The 1990 Clean Air Act Amendments were developed to reduce the acidity of sensitive surface waters, which are primarily in upland forested environments, where acidified waters and associated high aluminum concentrations are toxic to many species of aquatic flora and fauna [ Schindler et al. , 1989]. Our studies show that in spite of less acidic precipitation, the buffering capacity of streams in upland forests of the Catskill Mountains in southeastern New York has not increased in recent years. These data suggest that long-term leaching by acid rain has lowered exchangeable calcium ion concentrations in the soil in upland areas, where the underlying, slow-weathering bedrock provides an inadequate supply of cations to neutralize acidity.

New York↗

Landscape models of brook trout abundance and distribution in lotic habitat with field validation

Brook trout Salvelinus fontinalis are native fish in decline owing to environmental changes. Predictions of their potential distribution and a better understanding of their relationship to habitat conditions would enhance the management and conservation of this valuable species. We used over 7,800 brook trout observations throughout New York State and georeferenced, multiscale landscape condition data to develop four regionally specific artificial neural network models to predict brook trout abundance in rivers and streams. Land cover data provided a general signature of human activity, but other habitat variables were resistant to anthropogenic changes (i.e., changing on a geological time scale). The resulting models predict the potential for any stream to support brook trout. The models were validated by holding 20% of the data out as a test set and by comparison with additional field collections from a variety of habitat types. The models performed well, explaining more than 90% of data variability. Errors were often associated with small spatial displacements of predicted values. When compared with the additional field collections (39 sites), 92% of the predictions were off by only a single class from the field-observed abundances. Among “least-disturbed” field collection sites, all predictions were correct or off by a single abundance class, except for one where brown trout Salmo trutta were present. Other degrading factors were evident at most sites where brook trout were absent or less abundant than predicted. The most important habitat variables included landscape slope, stream and drainage network sizes, water temperature, and extent of forest cover. Predicted brook trout abundances were applied to all New York streams, providing a synoptic map of the distribution of brook trout habitat potential. These fish models set benchmarks of best potential for streams to support brook trout under broad-scale human influences and can assist with planning and identification of protection or rehabilitation sites.

New York↗

Habitat interaction between two species of chipmunk in the Basin and Range Province of Nevada

Interspecies interactions can affect how species are distributed, put constraints on habitat expansion, and reduce the fundamental niche of the affected species. Using logistic regression, we analyzed and compared 174 Tamias palmeri and 94 Tamias panamintinus within an isolated mountain range of the Basin and Range Province of southern Nevada. Tamias panamintinus was more likely to use pinyon/ponderosa/fir mixed forests than pinyon alone, compared to random sites. In the presence of T palmeri , however, interaction analyses indicated T. panamintinus was less likely to occupy the mixed forests and more likely near large rocks on southern aspects. This specie s-by-habitat interaction data suggest that T. palmeri excludes T panamintinus from areas of potentially suitable habitat. Climate change may adversely affect species of restricted distribution. Habitat isolation and species interactions in this region may thus increase survival risks as climate temperatures rise.

Nevada↗

Methods for capturing and banding Kalij Pheasants

We developed methods to capture and band Kalij Pheasants ( Lophura leucomelanos ) in their introduced range at Hawaii Volcanoes National Park, where they are not hunted and are relatively tame. Kalij were wary of foreign structures, such as traps, but readily took cracked corn bait and entered baited traps, provided they were introduced to them gradually. The majority of Kalij on the study site (53 of 64 birds) were captured using three trap designs: open-door trap, large box trap with hinged door, and drop trap. While the open-door trap was more mobile and easily set up in cramped forest spaces, only groups of as many as five birds could be captured at a time. The large, more cumber-some box traps captured groups of up to eight birds, whereas drop traps successfully captured only one bird at a time. Females were more difficult to capture than males. Band size was 7A for males and 6 for females.

Hawaii↗

Evaluation of connectivity among black bear populations in Georgia

Habitat fragmentation and loss contribute to isolation of wildlife populations and increased extinction risks for various species, including many large carnivores. We studied a small and isolated population of American black bears ( Ursus americanus ) that is of conservation concern in central Georgia, USA (i.e., central Georgia bear population [CGBP]). Our goal was to evaluate the potential for demographic and genetic interchange from neighboring bear populations to the CGBP. To evaluate resource selection and movement potential, we used 35,487 global positioning system locations collected every 20 minutes from 2012 to 2014 from 33 male bears in the CGBP. We then developed a step selection function model based on conditional logistic regression. Male bears chose steps that avoided crops, roads, and human developments and were closer to forests and woody wetlands than expected based on availability. We used a geographic information system to simulate 300 bear movement paths from nearby bear populations in northern Florida, northern Georgia, and southern Georgia to estimate the potential for immigration to the CGBP. Only 4 simulated movement paths from the nearby populations intersected the CGBP. The creation of a hypothetical 1-km-wide corridor between the southern Georgia population and the CGBP produced only minor improvements in interchange. Our findings suggest that demographic connectivity between the CGBP and surrounding bear populations may be limited, and coupled with previous works showing genetic isolation in the CGBP, that creation of corridors may have only marginal effects on restoring gene flow, at least in the near term. Management actions such as translocation and the establishment of stepping stone populations may be needed to increase the genetic diversity and demographic stability of bears in the CGBP. © 2021 The Wildlife Society.

Florida Georgia, North Carolina, South Carolina↗

Landscape-scale evaluation of asymmetric interactions between Brown Trout and Brook Trout using two-species occupancy models

Predicting the distribution of native stream fishes is fundamental to the management and conservation of many species. Modeling species distributions often consists of quantifying relationships between species occurrence and abundance data at known locations with environmental data at those locations. However, it is well documented that native stream fish distributions can be altered as a result of asymmetric interactions between dominant exotic and subordinate native species. For example, the naturalized exotic Brown Trout Salmo trutta has been identified as a threat to native Brook Trout Salvelinus fontinalis in the eastern United States. To evaluate large-scale patterns of co-occurrence and to quantify the potential effects of Brown Trout presence on Brook Trout occupancy, we used data from 624 stream sites to fit two-species occupancy models. These models assumed that asymmetric interactions occurred between the two species. In addition, we examined natural and anthropogenic landscape characteristics we hypothesized would be important predictors of occurrence of both species. Estimated occupancy for Brook Trout, from a co-occurrence model with no landscape covariates, at sites with Brown Trout present was substantially lower than sites where Brown Trout were absent. We also observed opposing patterns for Brook and Brown Trout occurrence in relation to percentage forest, impervious surface, and agriculture within the network catchment. Our results are consistent with other studies and suggest that alterations to the landscape, and specifically the transition from a forested catchment to one that contains impervious surface or agriculture, reduces the occurrence probability of wild Brook Trout. Our results, however, also suggest that the presence of Brown Trout results in lower occurrence probability of Brook Trout over a range of anthropogenic landscape characteristics, compared with streams where Brown Trout were absent.

Pennsylvania↗

Effectiveness of black bear translocation as a conflict management tool

Great Smoky Mountains National Park (GRSM) in Tennessee and North Carolina, USA, has a high-density American black bear ( Ursus americanus ) population and high human visitation, resulting in frequent human–bear conflicts. Translocation is a common tool for conflict mitigation, but previous research at GRSM based on very high frequency (VHF) telemetry and eartag returns found that the fates of most translocated conflict bears were unknown, thereby leaving many unanswered questions about the fates and movements of translocated bears, including their propensity for engaging in recurrent human–bear conflicts. We equipped 50 bears involved in human–bear conflicts in GRSM with global positioning system (GPS) radio-collars and translocated them to Cherokee National Forest, Tennessee. We used those GPS location data to evaluate survival, recurrence of conflict activity, homing rate, and settling rate. Many of these bears were released in the Pigeon River gorge (PRG), where we also collared 37 resident bears to compare survival rates and movement patterns. Known-fate models indicated that the mean annual survival probability for translocated bears across the study area during all years (2015–2024) was 0.223 (95% CI = 0.107–0.339), whereas the survival of translocated bears and resident bears in the PRG during years 2022–2024 was 0.210 (95% CI = 0.000–0.445) and 0.787 (95% CI = 0.632–0.942), respectively. Annual survival of translocated bears was also lower (0.034, 95% CI = 0.000–0.125) than their non-translocated counterparts that remained in GRSM (0.869, 95% CI = 0.762–0.976) from 2015–2018. Harvest was the greatest overall mortality risk for all translocated bears (0.482, 95% CI = 0.326–0.638), and translocated bears were at greater risk of harvest (0.750, 95% CI = 0.350–1.000) than residents (0.136, 95% CI = 0.000–0.280) in the PRG. The annual probability of translocated bears returning to their original capture locations (i.e., homing) decreased with distance translocated and averaged 0.615 (95% CI = 0.341–0.889) for adults and 0.111 (95% CI = 0.000–0.318) for subadults. For every 1-km increase in distance translocated, the weekly odds of a bear homing decreased by a factor of 0.975 ( ̂𝛽 = −0.025, 85% CI = −0.046 to −0.004). The annual probability of recurrent conflict for translocated bears, defined as a report to agency officials by landowners, was 0.388 (95% CI = 0.190–0.586). Recurrent conflict increased with the level of food conditioning ( ̂𝛽 = 0.334, 85% CI = 0.098–0.570). Public education and improved waste management are paramount to prevent human–bear conflicts, as translocation and other bear-centered options may not accomplish desired outcomes.

North Carolina, Tennessee↗

Evaluating density-weighted connectivity of black bears (Ursus americanus) in Glacier National Park with spatial capture–recapture models

Background Improved understanding of wildlife population connectivity among protected area networks can support effective planning for the persistence of wildlife populations in the face of land use and climate change. Common approaches to estimating connectivity often rely on small samples of individuals without considering the spatial structure of populations, leading to limited understanding of how individual movement links to demography and population connectivity. Recently developed spatial capture-recapture (SCR) models provide a framework to formally connect inference about individual movement, connectivity, and population density, but few studies have applied this approach to empirical data to support connectivity planning. Methods We used mark-recapture data collected from 924 genetic detections of 598 American black bears ( Ursus americanus ) in 2004 with SCR ecological distance models to simultaneously estimate density, landscape resistance to movement, and population connectivity in Glacier National Park northwest Montana, USA. We estimated density and movement parameters separately for males and females and used model estimates to calculate predicted density-weighted connectivity surfaces. Results Model results indicated that landscape structure influences black bear density and space use in Glacier. The mean density estimate was 16.08 bears/100 km 2 (95% CI 12.52–20.6) for females and 9.27 bears/100 km 2 (95% CI 7.70–11.14) for males. Density increased with forest cover for both sexes. For male black bears, density decreased at higher grizzly bear ( Ursus arctos ) densities. Drainages, valley bottoms, and riparian vegetation decreased estimates of landscape resistance to movement for male and female bears. For males, forest cover also decreased estimated resistance to movement, but a transportation corridor bisecting the study area strongly increased resistance to movement presenting a barrier to connectivity. Conclusions Density-weighed connectivity surfaces highlighted areas important for population connectivity that were distinct from areas with high potential connectivity. For black bears in Glacier and surrounding landscapes, consideration of both vegetation and valley topography could inform the placement of underpasses along the transportation corridor in areas characterized by both high population density and potential connectivity. Our study demonstrates that the SCR ecological distance model can provide biologically realistic, spatially explicit predictions to support movement connectivity planning across large landscapes.

Montana↗

Fall migration and habitat use of American woodcock in the central United States

Little is known about the migration ecology of the American woodcock (Scolopax minor). From 2001 to 2003, we began a 3-year study to document woodcock fall migration routes, rates, and habitat use from Minnesota, Wisconsin, and Michigan, USA. Some 586 radiomarked woodcock initiated migration. During 224 hours of aerial telemetry, we located 42 radiomarked woodcock in 6 states. Using locations of radiomarked birds, we speculated woodcock migration routes in the central United States. Stopover duration often exceeded 4 days, with some birds stopping longer than a week. Radiomarked birds were located in upland habitats more frequently than bottomland habitats, and used a higher proportion of mature forest than expected. A Geographic Information System was used to map potential woodcock habitat in the Central Region. Based on our results, we identified possible fall migration routes and priority areas for woodcock management in the Central Region. Our results should be used by land managers to prioritize future land acquisition and management of woodcock habitat.

Journal of Wildlife Management↗

Implications of invasion by Juniperus virginiana on small mammals in the southern Great Plains

Changes in landscape cover in the Great Plains are resulting from the range expansion and invasion of eastern red cedar (Juniperus virginiana). By altering the landscape and local vegetation, red cedar is changing the structure and function of habitat for small mammals. We examined effects of invasion by eastern red cedar on small mammals in 3 plant communities (tallgrass prairie, old field, and cross-timbers forest) in the cross-timbers ecoregion in Oklahoma. We sampled small mammals seasonally from May 2001 to August 2002 by using Sherman live traps and mark-recapture techniques on 3.24-ha, 450-trap grids in each plant community. We sampled vegetation in two hundred twenty-five 12 x 12-m cells within each grid. The structure of the small-mammal community differed among the 3 habitat types, with higher species diversity and richness in the tallgrass-prairie and old-field sites. Overall, the small-mammal community shifted along a gradient of increasing eastern red cedar. In the old-field and tallgrass-prairie plots, occurrence of grassland mammals decreased with increasing red cedar, whereas only 1 woodland mammal species increased. In the cross-timbers forest site, percent woody cover (<1 m in height), rather than cover of red cedar, was the most important factor affecting woodland mammal species. Examination of our data suggests that an increase in overstory cover from 0% to 30% red cedar can change a species-rich prairie community to a depauperate community dominated by 1 species, Peromyscus leucopus. Losses in species diversity and changes in mammal distribution paralleled those seen in avian communities invaded by eastern red cedar. Our results highlight ecological effects of invasion by eastern red cedar on diversity and function at multiple trophic levels. ?? 2005 American Society of Mammalogists.

Journal of Mammalogy↗

An inventory and typology of permanent floodplain lakes in the Mississippi alluvial valley: A first step to conservation planning

The alluvial valley of the Mississippi River is an extensive area harboring hundreds of lakes created by fluvial dynamics. These floodplain lakes are scattered throughout the valley and carved over thousands of years by shifting river courses and other hydro-fluvial processes associated with contemporary and prehistoric rivers. These lakes have significant ecological importance as they support a large component of North American biodiversity. We used remote sensing to catalog lakes, to characterize morphology, and to construct a typology via cluster analysis. We identified over 1,300 permanent lakes totaling over 100,000 ha. The lakes were classified into 12 types according to lake size, shape, depth, connectivity, inundation frequency, and surrounding landcover. We anticipate that biotic characteristics differ among the 12 types, but large-scale systematic analyses of biotic assemblages of floodplain lakes in the region are mostly absent. Our typology can provide the framework essential for organizing research to define water dynamics, water quality, and ecological conditions such as forests, mussel, fish, and avian communities to construct conservation plans. The typology encourages a large-scale view of the properties of floodplain lakes in the alluvial valley. It is a functional tool that can be used to begin identifying conservation and research needs, adapt monitoring and management programs, customize environmental programs, and use conservation resources more effectively to achieve large-scale management objectives.

Mississippi River↗