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USGS2014

A geologic approach to field methods in fluvial geomorphology

A geologic approach to field methods in fluvial geomorphology is useful for understanding causes and consequences of past, present, and possible future perturbations in river behavior and floodplain dynamics. Field methods include characterizing river planform and morphology changes and floodplain sedimentary sequences over long periods of time along a longitudinal river continuum. Techniques include topographic and bathymetric surveying of fluvial landforms in valley bottoms and describing floodplain sedimentary sequences through coring, trenching, and examining pits and exposures. Historical sediment budgets that include floodplain sedimentary records can characterize past and present sources and sinks of sediment along a longitudinal river continuum. Describing paleochannels and floodplain vertical accretion deposits, estimating long-term sedimentation rates, and constructing historical sediment budgets can assist in management of aquatic resources, habitat, sedimentation, and flooding issues.

Developments in Earth Surface Processes↗

USGS2002

Development of oak plantations established for wildlife

Extensive areas that are currently in agricultural production within the Mississippi Alluvial Valley are being restored to bottomland hardwood forests. Oaks (Quercus sp.), sown as seeds (acorns) or planted as seedlings, are the predominant trees established on most afforested sites. To compare stand development and natural invasion on sites afforested by planting seedlings or by sowing acorns, we sampled woody vegetation on ten 14- to 18-year-old oak plantations established to provide wildlife habitat. Stem densities of about 900 oaks/ha were comparable between stands established by sowing 4000 acorns/ha and stands established by planting 900 seedlings/ha. Densities of oaks in stands established from seedlings increased 38% from densities detected when these stands were 4- to 8-year-old. Densities of oaks established from field-sown acorns increased >100% during this same 10-year span. Oaks that were planted as seedlings were larger than those established from acorns, but trees resulting from either afforestation method were larger than trees naturally colonizing these sites. Natural invasion of woody species varied greatly among afforested sites, but was greater and more diverse on sites sown with acorns. Afforested stands were dominated by planted species, whereas naturally invading species were rare among dominant canopy trees. When afforestation objectives are primarily to provide wildlife habitat, we recommend, sowing acorns rather than planting seedlings. Additionally, planting fewer seeds or seedlings, diversifying the species planted, and leaving non-planted gaps will increase diversity of woody species and promote a more complex forest structure that enhances the suitability of afforested sites for wildlife.

Forest Ecology and Management↗

USGS2026

Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017–25

Despite the extensive natural gas pipeline network in the United States that intersects streams and other sensitive habitats, few case studies use a comparative upstream-to-downstream approach to evaluate potential short- and long-term effects of pipeline stream crossings from pre-construction through post-restoration. In 2017, the U.S. Geological Survey, in cooperation with the Virginia Department of Environmental Quality, deployed real-time continuous stream monitoring stations upstream and downstream from six proposed Mountain Valley Pipeline stream crossings in southwestern Virginia. Water temperature and turbidity data collected at the upstream and downstream sites were compared across three periods—before stream crossing construction, during stream crossing construction, and after stream crossing construction—to determine potential influences from the pipeline stream crossing. Additionally, the monitoring network was used to notify regulators of potentially anomalous conditions throughout the entire monitoring period. The results of this study indicate that pipeline stream crossing did not affect long-term or short-term upstream-to-downstream water temperature conditions or long-term upstream-to-downstream turbidity conditions in any of the six monitored streams. Some short-term anomalously elevated turbidity conditions were observed and attributable to pipeline stream crossing; however, the magnitudes and durations were not sufficient to alter the long-term turbidity regimes of the streams in which they were observed. The application of the monitoring network as a real-time alert system successfully alerted regulators to potentially anomalous conditions.

Virginia↗

USGS2014

Natural uranium and strontium isotope tracers of water sources and surface water-groundwater interactions in arid wetlands: Pahranagat Valley, Nevada, USA

Near-surface physical and chemical process can strongly affect dissolved-ion concentrations and stable isotope compositions of water in wetland settings, especially under arid climate conditions. In contrast, heavy radiogenic isotopes of strontium ( 87 Sr/ 86 Sr) and uranium ( 234 U/ 238 U) remain largely unaffected and can be used to help identify unique signatures from different sources and quantify end-member mixing that would otherwise be difficult to determine. The utility of combined Sr and U isotopes are demonstrated in this study of wetland habitats on the Pahranagat National Wildlife Refuge, which depend on supply from large-volume springs north of the Refuge, and from small-volume springs and seeps within the Refuge. Water budgets from these sources have not been quantified previously. Evaporation, transpiration, seasonally variable surface flow, and water management practices complicate the use of conventional methods for determining source contributions and mixing relations. In contrast, 87 Sr/ 86 Sr and 234 U/ 238 U remain unfractionated under these conditions, and compositions at a given site remain constant. Differences in Sr- and U-isotopic signatures between individual sites can be related by simple two- or three-component mixing models. Results indicate that surface flow constituting the Refuge’s irrigation source consists of a 65:25:10 mixture of water from two distinct regionally sourced carbonate aquifer springs, and groundwater from locally sourced volcanic aquifers. Within the Refuge, contributions from the irrigation source and local groundwater are readily determined and depend on proximity to those sources as well as water management practices.

Nevada↗

USGS2023

Assessing the presence of current-use pesticides in mid-elevation Sierra Nevada streams using passive samplers, California, 2018–19

Passive sampler devices were deployed in six northern California streams five times between November 2018 and December 2019 to measure the presence or absence of current-use pesticides in surface water. In the targeted areas, there are reported pesticide uses for agriculture, commercial forestry, and rights of way maintenance along with unreported pesticide use at private residences and cannabis grow sites. The sites sampled in this study were not previously monitored for current-use pesticides. Streams in the Sierra Nevada foothills of northern California are important habitats for many sensitive species including salmonids, but the logistics of sampling these areas can be difficult using traditional water-quality sampling techniques, especially when sampling watersheds where contaminant transport is episodic. Chemcatcher passive sampling devices and silicone bands were deployed in these areas to concentrate pesticides for days to weeks at a time. The U.S. Geological Survey, in cooperation with the Central Valley Regional Water Quality Control Board, was responsible for developing passive sampler field deployment and laboratory analytical methods for current-use pesticides, providing pesticide measurements from streams in the study region, and determining how well passive samplers detect pesticides in these environments. Six sites were monitored during the study, and passive sampler extracts were analyzed for a total 155 current-use pesticides in this study. A total of 19 out of the 155 pesticides including 9 insecticides, 5 fungicides, and 5 herbicides were detected in extracts from passive samplers. The most frequently detected pesticides were the herbicides hexazinone and dithiopyr, the insecticides bifenthrin and methoxyfenozide, and the fungicide azoxystrobin.

California↗

USGS2026

Biological, environmental, and geomorphological factors influencing reach-specific survival of spring Chinook Salmon smolts upstream of the Columbia–Snake River hydrosystem

Objective Pacific salmon Oncorhynchus spp. are exhibiting catastrophic declines throughout much of the Pacific Northwest, and juvenile mortality contributions are disproportionately high. Many Pacific salmon smolt populations are exhibiting high natal stream mortality; however, detailed natal stream reach-specific survival knowledge is lacking. Our objectives were to estimate natal stream reach-specific survival and identify influential covariates for spring Chinook Salmon O. tshawytscha smolts. An additional objective was to evaluate (i.e., estimate postrestoration cumulative survival) a novel and strategic large-scale river restoration approach (i.e., stream confluence restoration) in two Pacific Northwest spring Chinook Salmon natal streams. Methods Using radiotelemetry techniques during March–June (2011–2017), we estimated natal stream reach-specific survival for spring Chinook Salmon smolts in Catherine Creek and the Grande Ronde River, northeast Oregon. We examined the interrelated influences of temporal, biological, environmental, and geomorphological covariates on the behavior, travel time, and reach-specific survival of spring Chinook Salmon smolts that were emigrating through two hydrologically altered natal streams in the interior Columbia River basin. For each natal stream smolt tag-group, Cormack–Jolly–Seber reach-specific survival estimates that were adjusted for premature tag failure (i.e., bias-corrected) were generated. Subsequently, smolt effects were estimated using reach-specific travel times and survival estimates coupled with individual time-varying covariates from radio-tagged smolts and occupied reaches using an existing predator–prey model (i.e., mean free-path length [ XT ] model). Complementary population-specific principal coordinate analyses (PCoAs) were conducted to facilitate visualization of multicovariate resemblances in ordination space. Last, we employed our best-fitting XT model to model cumulative changes in smolt survival that were associated with a large-scale stream channel restoration scenario (i.e., restoration of the historical Catherine Creek and Grande Ronde River confluence). Results In aggregate, Catherine Creek smolts exhibited high mortality throughout Catherine Creek but near-100% survival upon entering the Grande Ronde River. In contrast, Grande Ronde River smolts generally exhibited low mortality upstream from the Grande Ronde Valley and high mortality throughout the Grande Ronde Valley. Our best-fitting XT model indicated that smolt survival was positively correlated with discharge, body size, and current velocity but negatively correlated with avian predation. Natural-origin smolts from Catherine Creek displayed higher λ-values (i.e., distance between predator–prey encounters) than their significantly larger and faster emigrating hatchery conspecifics, indicating that hatchery smolts may be more susceptible to predation. Our population-specific PCoAs further revealed that novel water (i.e., unique water chemistry) and emigration rate were the strongest predictors of reach occupancy in multivariate ordination space. Under a stream restoration scenario of restoring the historical hydrological template (i.e., restored channel configuration), our best-fitting XT model predicted changes in population-specific cumulative survivals to the lower Grande Ronde Valley (Imbler, Oregon) ranging from −38.4% to 69.0% for Grande Ronde River and Catherine Creek spring Chinook Salmon smolts, respectively. Conclusions Our best-fitting XT model and PCoAs identified the relative importance of biological, environmental, and geomorphological factors to both natural- and hatchery-origin Chinook Salmon smolt survival in two neighboring interior natal streams in the Columbia River basin. Our research indicates that concurrent habitat restoration and fish management strategies, including focused attention on smolt-rearing nursery habitat restoration, piscivorous avian control plans, adaptive management strategies for hatchery smolt releases, and discharge and novel water regime restoration projects, may yield survival benefits to “in-basin” Chinook Salmon smolts. Our research can inform origin-type-specific Chinook Salmon smolt management, habitat restoration, and future research decisions throughout the upper Grande Ronde River subbasin and potentially the Pacific Northwest.

Oregon, Washington↗

USGS2019

Geochemistry and mineralogy of soils collected in the lower Rio Grande valley, Texas

Presented in this report are the chemical and mineralogical results of a soil study conducted in the lower Rio Grande valley, Texas. Samples were collected from soils formed on Holocene alluvial flood-plain and distributary channel deposits of the Rio Grande, flood plain and meander-belt deposits of the Pliocene Goliad Formation, and the Pleistocene Lissie and Beaumont Formations. The lower Rio Grande valley is located on the old distributary delta of the Rio Grande. The watersheds on the U.S. side of the delta no longer drain into the Rio Grande but are part of a complex system of irrigation channels and wastewater drains that flow into the lower Laguna Madre. The results of the study have been used to map concealed geologic units and identify potential mosquito breeding habitat.

Texas↗

USGS2019

Managing effects of drought and other water resource challenges in Alaska and the Pacific Northwest

This is a Cooperator Report. As such, there is no specific abstract. The physical, ecological, and social environments of Alaska and the Pacific Northwest (PNW) region of the United States are extremely diverse. Alaska ranges from the Arctic Ocean and the very cold, dry environments of the North Slope to the cool and very rainy coastal North Pacific region of Southeast Alaska. Most precipitation falls as snow at higher elevations. In Arctic Alaska, average annual temperature is 14.6 F, and average annual precipitation is 11 inches. By contrast, in Southeast Alaska, average annual temperature is 35.8 F, and annual average precipitation is 143 inches. The PNW, defined here as Idaho, Oregon, and Washington, ranges from the Pacific Coast (annual precipitation of 200 inches) to interior semi-arid regions (annual precipitation of 8 inches). Precipitation patterns in the PNW are strongly governed by orographic phenomena, with high, persistent snowpack in the higher mountains (e.g., record annual snowfall of 1,130 in at Mount Baker, Washington in 1999-2000). Ecosystems in the PNW include productive temperate coniferous forests near the Pacific coast and along the (wet) west slope of the Cascade Range, less productive mixed-conifer forest along the (dry) east slope of the Cascades and in interior mountain ranges, and sagebrush-steppe and shrublands at lower elevations in much of the interior and mountain valleys. Large rivers and thousands of smaller tributaries form an extensive network of riparian, wetland, and estuarine systems that provide both critical hydrologic function and biological diversity at broad and fine spatial scales. Although Alaska and the Pacific Northwest differ in important physical, ecological, and social features, the importance of natural resources is evident in both regions. Water is important for wildlife and people. Water provides critical habitat for salmon, which are culturally and economically valuable species. Timber production has declined in recent decades. Recreation has emerged as a major revenue source.

Alaska, Oregon, Washington↗

USGS2005

Landscape level reforestation priorities for forest breeding landbirds in the Mississippi Alluvial Valley

Thousands of ha of cleared wetlands are being reforested annually in the Mississippi Alluvial Valley (MAV). Despite the expansive and long-term impacts of reforestation on the biological communities of the MAV, there is generally a lack of landscape level planning in its implementation. To address this deficiency we used raster-based digital data to assess the value of forest restoration to migratory landbirds for each ha within the MAV. Raster themes were developed that reflected distance from 3 existing forest cover parameters: (1) extant forest, (2) contiguous forest patches between 1,012 and 40,000 ha, and (3) forest cores with contiguous area <5,200 ha. Forest core habitat was any forest habitat >1 km from an agricultural, urban, or pastoral edge. Two additional raster themes were developed that combined information on the proportion of forest cover and average size of forest patches, respectively, within landscapes of 50,000, 100,000, 150,000, and 200,000 ha. Data from these 5 themes were amalgamated into a single raster using a weighting system that gave increased emphasis to existing forest cores, larger forest patches, and moderately forested landscapes while deemphasizing reforestation near small or isolated forest fragments and within largely agricultural landscapes. This amalgamated raster was then modified by the geographic location of historical forest cover and the current extent of public land ownership to assign a reforestation priority score to each ha in the MAV. However, because reforestation is not required on areas with extant forest cover and because restoration is unlikely on areas of open water and urban communities, these lands were not assigned a reforestation priority score. These spatially explicit reforestation priority scores were used to simulate reforestation of 368,000 ha (5%) of the highest priority lands in the MAV. Targeting restoration to these high priority areas resulted in a 54% increase in forest core - an area of forest core that exceeded the area of simulated reforestation. Bird Conservation Regions, developed within the framework of the Partners in Flight: Mississippi Alluvial Valley Bird Conservation Plan, encompassed a large proportion (circa 70%) of the area with highest priority for reforestation. Similarly, lands with high reforestation priority often were enrolled in the Wetland Reserve Program.

Book chapter↗

USGS2025

Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25

The natural gas pipeline network in the United States is extensive and often intersects streams and other sensitive habitats, yet there are limited case studies utilizing a comparative upstream-downstream approach to evaluate potential short- and long-term effects of pipeline stream crossing construction from pre-construction to post-site restoration. In 2017, the U.S. Geological Survey, in cooperation with the Virginia Department of Environmental Quality (DEQ), deployed real-time continuous stream monitoring stations upstream and downstream of six proposed Mountain Valley Pipeline (MVP) stream crossings in southwestern Virginia. Water temperature and turbidity data collected at the upstream and downstream sites were compared across three periods – before crossing construction, during crossing construction, and after crossing construction – to elucidate potential impacts from the stream crossing construction. Additionally, the monitoring network was utilized to notify regulators of potentially anomalous conditions throughout the entire monitoring period. Results of this study indicate (1) at all six monitored streams, pipeline stream crossing construction did not affect long-term or short-term upstream-to-downstream water temperature conditions; (2) pipeline stream crossing construction did not affect long-term upstream-to-downstream turbidity conditions in all six monitored streams. Some short-term anomalously elevated turbidity conditions were observed and attributable to pipeline stream crossing construction; however, the duration and magnitude were not sufficient to alter the long-term turbidity regime of the streams in which they were observed; and (3) the application of the monitoring network as a real-time alert system successfully alerted regulators to potentially anomalous conditions.

EarthArXiv↗

USGS2002

Assessment of stream quality using biological indices at selected sites in the Schuylkill River basin, Chester County, Pennsylvania, 1981-97

Introduction In 1970, the Chester County Water Resources Authority (Pennsylvania) and the U.S. Geological Survey (USGS) established a long-term water-quality network with the goal of assessing the quality of streams in the county and understanding stream changes in response to urbanization using benthic-macroinvertebrate data. This database represents one of the longest continuous water-quality data sets in the country. Benthic macroinvertebrates are aquatic insects, such as mayﬂies, caddisﬂies, rifﬂe beetles, and midges, and other invertebrates that live on the stream bottom. Benthic macroinvertebrates are useful in evaluating stream quality because their habitat preferences and low motility cause them to be affected directly by substances that enter the aquatic system. By evaluating the diversity and community structure of benthic-macroinvertebrate populations, a determination of stream quality can be made. Between 1981 and 1997, the network consisted of 43 sites in 5 major basins in Chester County—Delaware, Schuylkill, Brandywine, Big Elk and Octoraro, and Red and White Clay. Benthic-macroinvertebrate, water-chemistry, and habitat data were collected each year in October or November during base-ﬂow conditions. Using these data, Reif evaluated the overall water-quality condition of Chester County streams. This Fact Sheet summarizes the key ﬁndings from Reif for streams in the Schuylkill River Basin. These streams include Pigeon Creek (site 10), Stony Run (site 6), French Creek (sites 12-16), Pickering Creek (sites 1-5), Little Valley Creek (site 49), and Valley Creek (site 50). This summary includes an analysis of stream conditions based on benthic-macroinvertebrate samples and an analysis of trends in stream conditions for the 17-year study period.

Fact Sheet↗

USGS2013

Interactions between invasive round gobies ( Neogobius melanostomous ) and fantail darters ( Etheostoma flabellare ) in a tributary of the St. Lawrence River, New York, USA

The initial, rapid expansion of the invasive round goby ( Neogobius melanostomus ) throughout the Great Lakes drainage was largely confined to lentic systems. We recently observed round gobies ascending two tributaries of the St. Lawrence River. The expansion of gobies into small lotic environments may place ecologically similar species at risk. Fantail darter ( Etheostoma flabellare ) is one of the several benthic species of the New York Great Lakes drainages that are threatened by round goby invasion. We examined the habitat use and diet composition of fantail darters and round gobies in Mullet Creek, a third-order tributary of the St. Lawrence River, NY, USA. The objectives of this study were to determine the degree of habitat and diet overlap between fantail darters and round gobies in a tributary of the St. Lawrence River. Gobies and darters co-occurred at 22% of capture sites. Of the four habitat variables examined (cover, depth, substrate and velocity), only depth use was significantly different with gobies using deeper habitats than darters. Among the two species and size classes sampled (large vs. small), large darters had the most restricted habitat use requirements. There was variation in round goby and darter diet composition, but only moderate diet overlap occurred between fantail darters and round gobies (Cλ = 0.43). Conditions in Mullet Creek were appropriate for the evaluation of possible spatial and dietary competition between round goby and native darters. Early detection and management of round goby invasions is critical to maintaining ecological integrity of lotic ecosystems in the St. Lawrence Valley.

New York↗

USGS2013

Re-introduction of tule elk to Point Reyes National Seashore, California, USA

Tule elk (Cervus elaphus nannodes), a subspecies endemic to California, was historically found in large herds throughout much of central and coastal California. Market hunting during the California Gold Rush decimated these herds, and by 1895, only two to 10 elk remained. This remnant group was protected and served as the source for early relocation efforts (McCullough, 1971). Early efforts were generally unsuccessful but did establish a herd in California’s Owens Valley, outside their historical range, in 1933. The herd grew rapidly and supported six controversial hunts between 1943 and 1969. In an effort to limit hunting, concerned preservationists formed the Committee for the Preservation of Tule Elk in 1960. Public pressure resulted in the California State Legislature passing a law in 1971 that halted hunting until either state-wide numbers reached 2,000, or no further unoccupied elk habitat existed. This law prompted the California Department of Fish and Game to begin reintroducing tule elk throughout their former range. In 1976, the U.S. Congress passed a resolution that concurred with state law and directed federal agencies to make lands available for reintroductions within the subspecies’ historical range. Point Reyes National Seashore was identified as a potential translocation site.

California↗

USGS2023

Selenium hazards in the Salton Sea environment—Summary of current knowledge to inform future wetland management

Quaternary marine and continental shales in the western United States are sources of selenium that can be loaded into the aquatic environment through mining, agricultural, and energy production processes. The mobilization of selenium from shales through agricultural irrigation has been recognized since the 1930s; however, discovery of deformities in birds and other wildlife using agricultural habitats during the 1980s spurred studies to determine the extent and effects of the contamination. Through these early studies, researchers determined that biota in the Salton Sea drainage basin was at risk from legacy selenium contamination in the Colorado River watershed. The Salton Sea and its surrounding managed and unmanaged wetlands provide vital inland habitat and trophic support for diverse assemblages of resident and migratory wildlife, and understanding regional selenium hazards for these trust species is a priority for many Federal and State agencies. The modern Salton Sea is a shallow, landlocked saline lake in Riverside and Imperial Counties (not shown) of California that is sustained by irrigation return and perennial river inflow. Changes in water transfer agreements under the 2003 Quantification Settlement Agreement (QSA) have resulted in reduced irrigation flow, declining lake levels, and the evolution of unmanaged wetlands in areas where drains and rivers no longer reach the Salton Sea. These wetlands provide additional habitat for some species of concern, but their potential to increase selenium hazards for trust species is largely unknown. From the 1980s to 2020, efforts to document selenium contamination and effects throughout the region have resulted in a considerable amount of selenium data from the Salton Sea and its surrounding drainage basin; however, no long-term (greater than 20 years), consistent sampling program has been established, and all data have been collected by different entities using a variety of protocols and analytical techniques. This lack of coordination has been previously documented in regional management plans and has led to difficulty in reliably assessing selenium hazards in the Salton Sea environment. This report provides a summary of the available disparate selenium information collected from water, sediment, and biota in the Salton Sea region since the 1980s and to identify data gaps that need to be filled to understand the potential effects of selenium on species of concern, including federally endangered desert pupfish ( Cyprinodon macularius ) and Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis; formerly Yuma Clapper Rail, Rallus longirostris yumanensis ). Available data from the Salton Sea drainage basin show that water from the Colorado River has the lowest selenium concentration of all surface water sources. All other surface water flowing into the Salton Sea has elevated selenium concentrations due to evaporation and evapotranspiration that occurs in agricultural fields and associated water delivery infrastructure or leaching of selenium from irrigated farmland soils. The Salton Sea has lower selenium concentrations because of various biogeochemical processes that recycle selenium into the sediment or volatilize it to the atmosphere; however, these mechanisms are not well defined, and it is not clear if selenium cycling will change in response to possible changes in the oxidation state of the Salton Sea bottom waters as water levels decline. Agricultural drains have the highest average selenium concentrations, but few drains have been sampled since changes in irrigation practices have occurred (due to the 2003 QSA). Groundwater selenium concentrations are variable; some wells south of the Salton Sea have selenium concentrations as high as 300 micrograms per liter (µg/L), whereas selenium concentrations are below detection in other wells. Groundwater and surface-water geothermal discharge zones around the margins of the Salton Sea and in unmanaged wetlands have not been studied in detail, and published selenium measurements are not available for these surface features. Selenium concentrations in the sediment of the Salton Sea drainage basin are highest in wetland particulate organic matter and the Salton Sea lakebed, indicating that removal of selenium from the water to the sediment has been a primary mechanism for keeping selenium concentrations low in the water column. Sediment selenium concentrations in wetlands are lower than in the Salton Sea but higher than inflowing drains and rivers, indicating the lentic wetland sites also may be important sinks for selenium because of biogeochemical processes. Sediment selenium data have not been collected in agricultural drains since changes in irrigation practices occurred (due to the 2003 QSA), and it is unknown if selenium sequestration from the water column has changed in these systems. We divided biological data into broad taxonomic categories, including primary producers, invertebrates, herpetofauna, mammals, fishes, and birds to facilitate evaluation of selenium concentrations and spatiotemporal trends observed in the Salton Sea. Overall, selenium concentrations were substantially greater in algae samples compared to all vascular plant samples combined. Median selenium concentrations in several invertebrate taxa (Chironomidae, Formicidae, Corixidae, Corbiculidae and Nereididae, and Decapoda) exceeded the maximum suggested dietary threshold of 3.0–4.0 micrograms per gram (µg/g) dry weight (dw) for predators consuming invertebrates in aquatic food webs. The greatest number of samples were collected from fish, and selenium distributions among species and locations showed that the range for most samples was lower than the U.S. Environmental Protection Agency selenium criterion for aquatic life (8.5 µg/g dw whole body, 11.3 µg/g dw fillets). The median selenium concentrations for whole body fish were below the selenium criterion in most locations, except for bairdiella ( Bairdiella icistia ) from the Salton Sea and irrigation drains, a few individual tilapia spp. (family Cichlidae, including genera Tilapia, Oreochromis , and their hybrids) from the river and river outlets, and several western mosquitofish ( Gambusia affinis ) and sailfin molly ( Poecilia latipinna ) from irrigation drain outlets. For avian samples combined among years and locations, median selenium concentrations in livers from all families except waders and Ibis (family Threskiornithidae) were higher than levels expected to cause selenium toxicosis (10–20 µg/g dw), and all median egg concentrations were above or near 6.0 μg/g dw, which is a conservative threshold value for reproductive impairment. Most knowledge gaps we identified for water, sediment, and biota were interrelated, and the use of integrated approaches to address knowledge gaps can provide greater insight into the drivers behind selenium hazards. Integrated water, sediment, and biota studies could help identify cost-effective management solutions that serve multiple purposes. A comprehensive analysis of the hydrology, biogeochemistry, and food-web processes in wetlands and other habitats can inform predictive models to identify drivers of selenium bioavailability, uptake from the environment and subsequent trophic transfer, ultimately forming the basis for experimental habitat management manipulations to minimize selenium hazards to wildlife. Furthermore, a comprehensive, long-term sampling and analytical laboratory plan would enable comparison of data among different entities that are sampling at the Salton Sea. Such efforts are well suited to help fill knowledge gaps that preclude understanding of selenium hazards and future management options for biota using Salton Sea habitats, including newly formed wetlands throughout the region. All data compiled for this report are available in two U.S. Geological Survey data releases: Groover and others (2022) for water and sediment samples and De La Cruz and others (2022) for biological samples. The data releases include all publicly available data for selenium concentrations in water, sediment, and biological samples collected in and around the Salton Sea, including the Coachella and Imperial Valleys. The data releases also include previously unpublished data.

California↗

USGS2025

Groundwater structures fish growth and production across a riverscape

Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises water temperature and flow regimes, thus mediating how habitat complexity is expressed. Yet, how stable habitats structure growth and production within the broader landscape matrix is not well understood. In this study, we explored the effects of groundwater on spatiotemporal variation in growth and production for juvenile Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) across the upper Snake River catchment, Wyoming, USA. We combined machine learning techniques and remotely sensed landscape data to estimate groundwater availability across the river network, which we linked to stream temperature regimes and conspecific density. We then used Bayesian hierarchical models to quantify the effects of temperature, density and groundwater on spatiotemporal variation in fish growth and production in 52 focal reaches. Finally, we predicted body size trajectories and trends in total production continuously over both space and time to understand the effect of groundwater at the riverscape scale. Groundwater discharged to streams where topography changes abruptly in valley-bottom areas underlain by coarse glacial deposits. Groundwater stabilised temperature regimes and was associated with high trout densities. Temperature and density, in turn, interacted to influence growth rates: growth increased strongly with temperature, but this effect was reduced when density was high. Accordingly, variation in groundwater availability among stream reaches diversified growth and production regimes. In reaches with low groundwater availability, growth and production declined over time from summer maxima. In contrast, in reaches with high groundwater availability, temporal trends in growth and production were hump-shaped—peaking in autumn—and mean production was greater. At the riverscape scale, temporal asynchrony in growth rates generated convergent spatial variation in growth capacity, but—when combined with density—led to the formation of distinct hotspots of production. Our results demonstrate how groundwater, an important driver of aquatic ecosystem heterogeneity, structures trout growth and production across space and time. Importantly, rare, but stable habitats may disproportionately affect ecological processes and serve as key sources of population diversity at larger spatial scales.

Wyoming↗

USGS2026

Sources and streambed storage of soft sediment and sediment-bound phosphorus in an agricultural Great Lakes tributary

The East River, an agricultural tributary to the Lower Fox River and Lake Michigan in Wisconsin, USA, has excessive phosphorus (P) and suspended-sediment loads that contribute to downstream eutrophication and habitat-related impairments. Spatial variations and connectivity in the sources and streambed storage of soft, fine-grained (silt and clay) sediment and related sediment-bound P (sed-P) were examined, from first-order ephemeral channels to a downstream water-monitoring station. Analysis included field inventories, a channel corridor sediment and sed-P budget applied to an extended channel network, and geochemical fingerprinting. Corridor inventories included mass wasting along valley sides, eroding streambanks, gullying along perennial and ephemeral channels, and streambed storage volumes in perennial reaches; each converted to masses. Erosion results estimate 7400 Mg/yr of fine-grained sediment, similar to the mean annual suspended sediment load of 5400 Mg/yr. Corridor erosion contributed 7200 kg/yr of sed-P, less than the mean annual particulate-P load of 10,000 kg/yr P. Soft sediment storage was 1400 Mg, with 1500 kg sed-P. Apportionment of soft sediment as streambank sourced was spatially variable, contributing ≥95 % in high order reaches with high storage and as little as 20 % in upstream reaches, where gully, crop, and forest provided the remainder. Two nearby tributaries showed similarity in the predominance of streambank-sourced material in stored soft sediment but differences in geomorphic setting affected its spatial distribution. The results of this study show the importance of including corridor erosion as a source of sediment and sed-P in agricultural basins, which can be helpful in decision-making regarding conservation practices.

Wisconsin↗

USGS2021

Influence of antecedent geology on the Holocene formation and evolution of Horn Island, Mississippi, USA

Horn Island, one of the two most stable barriers along the Mississippi-Alabama chain (Cat, East and West Ship, Horn, West Petit Bois, Petit Bois, and Dauphin), provides critical habitat, helps regulate estuarine conditions in the Mississippi Sound, and reduces wave energy and storm surge before they reach the mainland shore. However, important details of the formation and evolution of the island in response to sea-level rise, storms, and antecedent geology remain unclear. This study integrates 2200 km of high-resolution geophysical data, 35 sediment cores, and 18 radiocarbon ages to better understand the geologic history of the island. Incised valleys of the Biloxi and Pascagoula Rivers underlie Horn Island and played a profound role in the evolution of the system. Within the incised valleys, sandy paleochannel deposits represent potential sediment sources during island development. Scour associated with wave and tidal ravinement processes liberated sand from the paleochannels and along with numerous other sizable sand sources on the shelf contributed to the formation and continued maintenance of Horn Island. Based on radiocarbon ages, transgressive ephemeral islands/shoals with no preserved shoreface existed at least 8000 cal yr BP and were frequently overwashed when sea-level rise rates were ~ 4–5 mm/yr. Approximately 5000 cal yr BP, coinciding with a deceleration in sea-level rise to about 1.4 mm/yr and attendant increased sand supply, radiocarbon ages associated with Horn Island's barrier complex and lower shoreface indicate a period of island stabilization. Seismic and sediment core data show a long history of westward lateral migration by longshore currents through tidal ravinement and inlet fill. Subsurface sand packages associated with tidal inlet fill and paleochannels are available for ravinement and may be important sand sources for Horn Island to maintain subaerial exposure with the expected accelerated future sea-level rise.

Mississippi↗

USGS2016

Sediment budgets, transport, and depositional trends in a large tidal delta

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream sediment supply (Wright and Schoellhamer, 2004). Today, one concern is whether the volume of sediment supplied from the upper watershed is sufficient to support ecological function and sustain the Delta landscape and ecosystem in the face of climate change, sea level rise, and proposed restoration associated with the Bay Delta Conservation Plan (http://baydeltaconservationplan.com). Ecosystem health is a management focus and 150,000 acres of restoration is currently proposed, therefore it is of increasingly important to understand the quantity of sediment available for marsh and wetland restoration throughout the Bay Delta Estuary. It is also important to understand the pathways for sediment transport and the sediment budget into each of three Delta regions (figure 1) to guide restoration planning, modeling, and management.

California↗