SEARCH · USGS Science

Results for “Investigations in Fish Control”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 415 records · Page 23Linked to original sources

USGS2009

Hydrologic characterization for Spring Creek and hydrologic budget and model scenarios for Sheridan Lake, South Dakota, 1962-2007

The U.S. Geological Survey cooperated with South Dakota Game, Fish and Parks to characterize hydrologic information relevant to management of water resources associated with Sheridan Lake, which is formed by a dam on Spring Creek. This effort consisted primarily of characterization of hydrologic data for a base period of 1962 through 2006, development of a hydrologic budget for Sheridan Lake for this timeframe, and development of an associated model for simulation of storage deficits and drawdown in Sheridan Lake for hypothetical release scenarios from the lake. Historically, the dam has been operated primarily as a 'pass-through' system, in which unregulated outflows pass over the spillway; however, the dam recently was retrofitted with an improved control valve system that would allow controlled releases of about 7 cubic feet per second (ft3/s) or less from a fixed depth of about 60 feet (ft). Development of a hydrologic budget for Sheridan Lake involved compilation, estimation, and characterization of data sets for streamflow, precipitation, and evaporation. The most critical data need was for extrapolation of available short-term streamflow records for Spring Creek to be used as the long-term inflow to Sheridan Lake. Available short-term records for water years (WY) 1991-2004 for a gaging station upstream from Sheridan Lake were extrapolated to WY 1962-2006 on the basis of correlations with streamflow records for a downstream station and for stations located along two adjacent streams. Comparisons of data for the two streamflow-gaging stations along Spring Creek indicated that tributary inflow is approximately proportional to the intervening drainage area, which was used as a means of estimating tributary inflow for the hydrologic budget. Analysis of evaporation data shows that sustained daily rates may exceed maximum monthly rates by a factor of about two. A long-term (1962-2006) hydrologic budget was developed for computation of reservoir outflow from Sheridan Lake for the historical pass-through operating system. Two inflow components (stream inflow and precipitation) and one outflow component (evaporation) were considered. The hydrologic budget uses monthly time steps within a computational year that includes two 6-month periods - May through October, for which evaporation is accounted for, and November through April, when evaporation is considered negligible. Results indicate that monthly evaporation rates can substantially exceed inflow during low-flow periods, and potential exists for outflows to begin approaching zero-flow conditions substantially prior to the onset of zero-inflow conditions, especially when daily inflow and evaporation are considered. Results also indicate that September may be the month for greatest potential benefit for enhancing fish habitat and other ecosystem values in downstream reaches of Spring Creek with managed releases of cool water. Computed monthly outflows from Sheridan Lake for September are less than 1.0 ft3/s for 8 of the 44 years (18 percent) and are less than 2.0 ft3/s for 14 of the 44 years (32 percent). Conversely, none of the computed outflows for May are less than 2.0 ft3/s. A short-term (July through September 2007) data set was used to calculate daily evaporation from Sheridan Lake and to evaluate the applicability of published pan coefficients. Computed values of pan coefficients of approximately 1.0 and 1.1 for two low-flow periods are larger than the mean annual pan coefficient of 0.74 for the area that is reported in the literature; however, the computed values are consistent with pan coefficients reported elsewhere for similar late summer and early fall periods. Thus, these results supported the use of variable monthly pan coefficients for the long-term hydrologic budget. A hydrologic model was developed using the primary components of the hydrologic budget and was used to simulate monthly storage deficits and drawdown for Sheridan Lake using hypothetical

South Dakota↗

USGS2025

Controls on sediment transport and storage in the Little Snake, Yampa, and Green Rivers in the vicinities of Dinosaur National Monument and Ouray National Wildlife Refuge, Colorado and Utah, with implications for fish habitat in the middle Green River

The transport of sand and finer sediment in the Yampa and Green river network is typically in disequilibrium with the local sediment supply because of the partial decoupling of the sources of water and sediment: most of the water is supplied farther upstream than most of the sediment. This decoupling leads to sand being transported in the main-stem rivers as elongating sand waves following sand resupply during tributary floods. Because of the large amount of sand supplied to the Yampa River by the Little Snake River, Yampa River annual floods generate sand waves that migrate downstream in the Green River causing longitudinal patterns in bed-sand grain size that, in turn, lead to large spatial changes in sand transport. These changes in bed-sand grain size dominate over changes in water discharge in regulating sand transport in the sand-bedded reaches of these rivers. Furthermore, at any given discharge, these changes in bed-sand grain size dominate over all other processes in regulating sand transport in both sand- and gravel-bedded reaches of these rivers. Consequently, erosion or deposition of sand, and the associated changes in fish habitat in the Uinta Basin segment of the Green River are only indirectly related to Green River discharge and Flaming Gorge Dam operations. Owing to the longitudinal patterns of bed-sand grain size associated with the downstream migration of sand waves generated by the Yampa River, a multi-year sequence of large, and likely slightly declining, annual floods on the Yampa River is the probable mechanism that increases backwater fish habitat in the Uinta Basin segment of the Green River. Cross-section resurveys indicate that the Uinta Basin (Jensen to Ouray) segment of the Green River has undergone sand erosion caused by slight channel widening since the 1990s (a channel response in opposition to that observed farther downstream in Canyonlands National Park during this period). These resurveys indicate that sand deposition leads to a decrease in channel complexity whereas sand erosion generally leads to an increase in channel complexity. The backwaters used as native fish nursery habitat consist of deep pools downstream from and adjacent to large bank-attached sandbars; thus, more extensive backwater habitat equates to greater channel complexity. The generation of the sand wave during the first large Yampa River flood in a sequence (that is, the year-1 flood) causes fining of the bed sand near Jensen. The downstream coarsening associated with bed sand that is finer near Jensen than downstream near Ouray causes a downstream decrease in sand transport in the Uinta Basin segment, leading to net sand deposition and decreased channel complexity. Continued downstream migration of this sand wave during the following year’s annual flood (that is, the year-2 flood) then causes downstream fining, leading to erosion of sand and increased channel complexity in this segment. Although the year-1 Yampa River flood supplies the sand and deposits the large sandbars required to form backwaters, and thereby makes possible future backwater habitat, these floods cause a temporary reduction in backwater habitat in the Uinta Basin segment because they tend to cause net sand deposition. It is the subsequent out-year Yampa River floods of likely equal or lesser magnitude that maintain or increase backwater habitat because these are the floods that convey sand through or erode sand from this segment. These typically smaller out-year Yampa River floods rework the sandbars deposited during the year-1 annual flood, thereby leading to the increases in both backwater area and volume that have been measured upon recession of these floods. Although artificial floods released from Flaming Gorge Dam might be used to simulate the habitat maintenance achieved by out-year Yampa River floods, the limited sand supply and stage associated with such dam releases precludes their use as a replacement for the sandbar-depositing role of year-1 Yampa River floods that is a prerequisite for backwater formation in the Uinta Basin segment of the Green River.

Colorado, Utah↗

USGS2004

Presence and distribution of organic wastewater compounds in wastewater, surface, ground, and drinking waters, Minnesota, 2000-02

Selected organic wastewater compounds (OWCs) such as household, industrial, and agricultural-use compounds, pharmaceuticals, antibiotics, and sterols and hormones were measured at 65 sites in Minnesota as part of a cooperative study among the Minnesota Department of Health, Minnesota Pollution Control Agency, and the U.S. Geological Survey. Samples were collected in Minnesota during October 2000 through November 2002 and analyzed for the presence and distribution of 91 OWCs at sites including wastewater treatment plant influent and effluent; landfill and feedlot lagoon leachate; surface water; ground water (underlying sewered and unsewered mixed urban land use, a waste dump, and feedlots); and the intake and finished drinking water from drinking water facilities. There were 74 OWCs detected that represent a wide variety of use. Samples generally comprised a mixture of compounds (average of 6 OWCs) and 90 percent of the samples had at least one OWC detected. Concentrations for detected OWCs generally were less than 3 micrograms per liter. The ten most frequently detected OWCs were metolachlor (agricultural-use herbicide); cholesterol (sterol primarily associated with animal waste); caffeine (stimulant), N,N-diethyl- meta -toluamide (DEET) (topical insect repellant); bromoform (disinfection by product); tri(2-chloroethyl)phosphate (flame-retardant and plastic component); beta -sitosterol (plant sterol that is a known endocrine disruptor); acetyl-hexamethyl-tetrahydro- naphthalene (AHTN) (synthetic musk widely used in personal care products, and a known endocrine disruptor); bisphenol-A (plastic component and a known endocrine disruptor); and cotinine (metabolite of nicotine). Wastewater treatment plant influent and effluent, landfill leachate, and ground water underlying a waste dump had the greatest number of OWCs detected. OWC detections in ground-water were low except underlying the one waste dump studied and feedlots. There generally were more OWCs detected in surface water than ground water, and there were twice as many OWCs detected in the surface water sites downstream from wastewater treatment plant (WWTP effluent than at sites not directly downstream from effluent. Comparisons among site classifications apply only to sites sampled during the study. Results of this study indicate ubiquitous distribution of measured OWCs in the environment that originate from numerous sources and pathways. During this reconnaissance of OWCs in Minnesota it was not possible to determine the specific sources of OWCs to surface, ground, or drinking waters. The data indicate WWTP effluent is a major pathway of OWCs to surface waters and that landfill leachate at selected facilities is a potential source of OWCs to WWTPs. Aquatic organism or human exposure to some OWCs is likely based on OWC distribution. Few aquatic or human health standards or criteria exist for the OWCs analyzed, and the risks to humans or aquatic wildlife are not known. Some OWCs detected in this study are endocrine disrupters and have been found to disrupt or influence endocrine function in fish. Thirteen endocrine disrupters, 3- tert -butyl-4-hydoxyanisole (BHA), 4- cumylphenol, 4- normal -octylphenol, 4- tert -octylphenol, acetyl-hexamethyl-tetrahydro-naphthalene (AHTN), benzo[α]pyrene, beta-sitosterol, bisphenol-A, diazinon, nonylphenol diethoxylate (NP2EO), octyphenol diethoxylate (OP2EO), octylphenol monoethoxylate (OP1EO), and total para -nonylphenol (NP) were detected. Results of reconnaissance studies may help regulators who set water-quality standards begin to prioritize which OWCs to focus upon for given categories of water use.

Minnesota↗

USGS2017

A simulation method for combining hydrodynamic data and acoustic tag tracks to predict the entrainment of juvenile salmonids onto the Yolo Bypass under future engineering scenarios

During water year 2016 the U.S. Geological Survey California Water Science Center (USGS) collaborated with the California Department of Water Resources (DWR) to conduct a joint hydrodynamic and fisheries study to acquire data that could be used to evaluate the effects of proposed modifications to the Fremont Weir on outmigrating juvenile Chinook salmon. During this study the USGS surgically implanted acoustic tags in juvenile late fall run Chinook salmon from the Coleman National Fish Hatchery, released the acoustically tagged juvenile salmon into the Sacramento River upstream of the Fremont Weir, and tracked their movements as they emigrated past the western end of the Fremont Weir. The USGS analyzed tracking data from the acoustically tagged juvenile salmon along with detailed hydrodynamic data collected in the Sacramento River during the winter/spring of water year 2016 in the vicinity of the western end of the Fremont Weir to assess the potential for enhancing the entrainment of Sacramento River Chinook salmon onto the Yolo Bypass under six different Fremont Weir modification scenarios. Each modification scenario consists of a notch or multiple notches in the Fremont Weir which are designed to divert a portion of the Sacramento River onto the Yolo Bypass when the Sacramento River is below the crest of the Fremont Weir. The primary goal of this entrainment analysis was to investigate how the location of the notch or notches in each scenario affected the entrainment of juvenile Chinook salmon onto the Yolo Bypass, and to predict the notch location or locations that would result in maximum entrainment under each modification scenario. Stumpner et al.’s (in review) analysis of hydraulic data collected during the 2016 study period showed that backwater effects in the Sacramento River created significant variability in the relationship between Sacramento River stage and the proportion of the Sacramento River flow that we expect to be diverted onto the Yolo Bypass under the modification scenarios. Because of this variability, accurately evaluating the entrainment potential of possible notch locations for each scenario required combining historic abundance data for juvenile Sacramento River Chinook salmon with historic hydraulic data for the Sacramento River in the vicinity of the Fremont Weir, so that the entrainment estimates would reflect the covariance between Sacramento River stage, Sacramento River discharge, and juvenile salmon abundance within the historic record. We used a Monte Carlo simulation framework to combine the high resolution hydrodynamic data and acoustic tag track data collected in 2016 with historic juvenile salmon abundance, Sacramento River stage, and Sacramento River discharge data from a period spanning water years 1996-2010 to assess the entrainment potential of different weir modification scenarios under historic conditions. The scenarios we simulated consisted of four single notch configurations, and two multiple notch configurations in the vicinity of the western end of the Fremont Weir. For each notch configuration the 15-water-year entrainment simulation was repeated for 63 possible notch locations in the vicinity of the western end of the Fremont Weir. This approach allowed us to assess the effect of notch location on the entrainment of juvenile salmonids onto the Yolo Bypass for each of the six notch configurations that we evaluated. The entrainment simulations showed that the location of each notch configuration had a major impact on the entrainment for each scenario; the predicted entrainment of some scenarios varied by as much as 400% based on where the notch (or notches) was (were) located in the study area. All of the single notch scenarios performed best when they were located within a 330 ft (100 meter) long section of the Sacramento River bank adjacent to the western terminus of the Fremont Weir (Table 1). Both of the multiple notch scenarios performed best when their upstream notches were located about 660 ft (200 meters) upstream of the western terminus of the Fremont Weir (Table 1). The results of the entrainment simulations indicated that for each notch configuration the same notch location produced near-maximum entrainment regardless of run abundance timing; this result suggests that there are areas within the study are where a notch (or notches) can be sited to achieve maximum entrainment for all runs (barring significant behavioral or physiological differences between runs). In addition, the simulation results indicate that for each notch configuration the same location is expected to produce nearmaximum entrainment for both wet water years and dry water years. Based on the results of the entrainment simulation we make three general recommendations for strategies to improve the entrainment potential of a notch in the Fremont Weir: 1) Comparisons between the maximum entrainment potential for each scenario suggested that total entrainment of winter run, spring run, and fall run salmon onto the Yolo Bypass can be increased by increasing the amount of water entering a notch when the Sacramento River stage is between 19 ft and 22 ft NAVD88; this could be accomplished by lowering notch invert elevations or by adding a control section to the Sacramento River to raise stage for a given discharge. 2) The relationship between Sacramento River stage and entrainment for each scenario indicated that entrainment efficiency for each scenario declined significantly once Sacramento River stage exceeded bankfull (approximately 28.5 ft NAVD88). This effect was likely due to inundation of the floodplain between the Sacramento River and the Fremont Weir; Stumpner et. al (In Review) have documented a reduction in the strength of the secondary circulation and centralization of the downwelling zone in the Sacramento River when this floodplain is inundated. Therefore, increasing the height of the river right bank of the Sacramento River to coincide with the height of the Fremont Weir is recommended to increase entrainment at higher stages. 3) Bathymetric features upstream of notch openings appeared to have a major impact on the entrainment potential of the simulated notches. For this reason we recommend taking care to avoid siting notches immediately downstream of bank features that alter the sidewall boundary layer, and we expect that smoothing the bank bathymetry upstream of a notch will enhance entrainment. Finally, we caution that the entrainment simulation was based on the behavior of large hatchery smolts, so it is likely that our results will be sensitive to any differences in behavior and physiology between these hatchery surrogates and naturally migrating juvenile salmon.

California↗

USGS2010

Hydrology, water quality, and water-supply potential of ponds at Hunter Army Airfield, Chatham County, Georgia, November 2008-July 2009

The hydrology, water quality, and water-supply potential of four ponds constructed to capture stormwater runoff at Hunter Army Airfield, Chatham County, Georgia, were evaluated as potential sources of supplemental irrigation supply. The ponds are, Oglethorpe Lake, Halstrum Pond, Wilson Gate Pond, and golf course pond. During the dry season, when irrigation demand is highest, ponds maintain water levels primarily from groundwater seepage. The availability of water from ponds during dry periods is controlled by the permeability of surficial deposits, precipitation and evaporation, and the volume of water stored in the pond. Net groundwater seepage (Gnet) was estimated using a water-budget approach that used onsite and nearby climatic and hydrologic data collected during November-December 2008 including precipitation, evaporation, pond stage, and discharge. Gnet was estimated at three of the four sites?Oglethorpe Lake, Halstrum Pond, and Wilson Gate Pond?during November-December 2008. Pond storage volume in the three ponds ranged from 5.34 to 12.8 million gallons. During November-December 2008, cumulative Gnet ranged from -5.74 gallons per minute (gal/min), indicating a net loss in pond volume, to 19 gal/min, indicating a net gain in pond volume. During several periods of stage recovery, daily Gnet rates were higher than the 2-month cumulative amount, with the highest rates of 178 to 424 gal/min following major rainfall events during limited periods. These high rates may include some contribution from stormwater runoff; more typical recovery rates were from 23 to 223 gal/min. A conservative estimate of the volume of water available for irrigation supply from three of the ponds was provided by computing the rate of depletion of pond volume for a variety of withdrawal rates based on long-term average July precipitation and evaporation and the lowest estimated Gnet rate at each pond. Withdrawal rates of 1,000, 500, and 250 gal/min were applied during an 8-hour daily pumping period. At a withdrawal rate of 1,000 gal/min, available pond volume would be depleted in 13-29 days, at a rate of 500 gal/min in 24-60 days, and at a rate of 250 gal/min, in 44 to 130 days. In each case, Halstrum Pond had the largest amount of available pond volume. The water-supply potential at the golf course pond was assessed by measuring flow downstream from the pond during February-July 2009, and examining historic stormflow measurements collected during 1979-87. Streamflow during both of these periods exceeded average daily (2005-2007) golf course water use. Assuming an 8-hour daily irrigation period, the average discharge rate required to meet Golf Course water demand during peak demand months of March-May and July-October exceeds 200 gal/min, with the greatest rate of 531 gal/min during July. During February-July 2009, daily average streamflow downstream of the golf course pond exceeded 238 gal/min 90 percent of the time. Based on samples collected for chemical analysis during April 2009, water from all four ponds at Hunter Army Airfield is fresh and suitable for irrigation supply, with chloride concentrations below 12 milligrams per liter. With the exception of iron in Wilson Gate Pond, constituent concentrations are below U.S. Environmental Protection Agency primary and secondary drinking water maximum contaminant levels. Water in Wilson Gate Pond contained an iron concentration of 419 mg/L, which exceeds the secondary maximum contaminant level of 300 micrograms per liter. Although not a health hazard, when the iron concentration exceeds 300 micrograms per liter, iron staining of sidewalks and plumbing fixtures may occur. Levels of dissolved oxygen were below the Georgia Environmental Protection Divison standard of 4 milligrams per liter for waters supporting warm-water fishes at deeper depths in Oglethorpe Lake, Wilson Gate Pond, and Halstrum Pond, and in the composite sample at the golf course pond.

Georgia↗

USGS2023

Historical changes to channel planform and bed elevations downstream from dams along Fall Creek and Middle Fork Willamette River, Oregon, 1926–2016

Operation of large, multipurpose dams within the Middle Fork Willamette River Basin, Oregon, including the Fall Creek sub-basin, have disrupted natural streamflow and sediment transport regimes and fish passage along the river corridors. Documenting channel morphology, including channel planform, landforms, vegetation cover, and river channel elevations at multiple points in time spanning the 20th and early 21st centuries, is useful for characterizing net changes occurring in response to construction and operation of these dams. The U.S. Geological Survey assessed historical channel changes that occurred within the past century in response to the construction and operation of flood-control dams by evaluating planimetric datasets (from 1926 plan and profile surveys and 1936 and 2016 aerial photographs) and elevation datasets (from 1926 plan and profile surveys and 2015 light detection and ranging [lidar]). This study specifically focuses on the lower 27.3 kilometers (km) of the Middle Fork Willamette River and the lower 11.5 km of Fall Creek, or the reaches downstream from the U.S. Army Corps of Engineers Dexter Dam and Fall Creek Dam, to the confluence with Coast Fork Willamette River. Altogether, compilation and evaluation of datasets for Fall Creek and the Middle Fork Willamette River downstream from the dams provide a foundation for understanding: channel morphology and patterns of geomorphic stability prior to dam construction in 1926 and 1936; channel morphology and patterns of lateral and vertical stability of the early 21st century that reflect present-day (post-dam) streamflow and sediment regimes as of 2015–16; and geomorphic transformations of the river corridors in the decades following dam construction, including changes in planform and bed elevation (determined from water-surface elevations). Findings from this study can be used to provide historical and geomorphic context for geomorphic responses to deep reservoir drawdowns on Fall Creek Lake that mobilize reservoir sediment downstream and informing other restoration and river-management activities; this report summarizes one component of a larger research effort to document the magnitude and spatial distribution of geomorphic responses to sediment releases from draining Fall Creek Lake. As of 2016, the modern Fall Creek flows through a narrow, semi-alluvial channel that efficiently conveys water and sediment at typical streamflows downstream from Fall Creek Dam. This channel planform, including the positions and distributions of bars and secondary water features (side channels, alcoves, and ponds), generally reflects pre-dam conditions in 1936, suggesting relatively modest morphological adjustments resulted from reductions in sediment supply and alterations to peak streamflow after dam construction. The most substantial morphologic change detected over this period was a reduction in unvegetated gravel bars. As of 2016, the modern Middle Fork Willamette River is a large, gravel-bed river that, despite substantial transformations in channel morphology and reduction in lateral dynamism following the construction of multiple upstream dams, remains a dominantly alluvial river. Prior to dam construction in 1926 and 1936, the reaches of the Middle Fork Willamette River downstream from Dexter Dam were laterally active with multi-thread and single-thread channels flanked by large, shifting gravel bars. Since streamflow regulation and other channel modifications in the mid-20th century, these reaches have become less laterally active and encompass a narrower floodplain corridor as abundant former gravel bars were converted to low-elevation floodplains colonized by young, dense forests. The Middle Fork Willamette River downstream from Dexter Dam has remained mostly vertically stable between 1926 and 2015, although localized segments possibly decreased in elevation as much as 2.3 meters.

Oregon↗

USGS2005

Physical and chemical characteristics of Knowles, Forgotten, and Moqui Canyons, and effects of recreational use on water quality, Lake Powell, Arizona and Utah

Side canyons of Lake Powell are the most popular recreation areas of the Glen Canyon National Recreation Area in Arizona and Utah. There are more than 90 side canyons that are tributaries to the main lake body of Lake Powell. Near Bullfrog and Halls Crossing marinas in Utah, visitors frequent Knowles, Forgotten, and Moqui Canyons to fish, boat, camp, and hike the sandstone formations for which Lake Powell is famous. Areas of recreational activity are greatest near beaches in side canyons. Emissions from houseboats, personal watercraft, speedboats, and from some nonboating recreational activities introduce contaminants to the lake and to beach areas. The U.S. Geological Survey documented concentrations of trace elements, volatile organic compounds, organic wastewater contaminants, and other byproducts of fuel-based contaminants in water and bed material in Knowles, Forgotten, and Moqui Canyons during the summers of 2001 and 2002. Field work was conducted during four trips when recreational use was at a minimum (before Memorial Day in May) and when it was at a maximum (near Labor Day in September). Knowles Canyon was treated as a control; therefore, public access by motorcraft was not permitted during the study. Electric-powered or oar-powered research boats were used to collect samples and measure properties in Knowles Canyon. Record-low reservoir elevations during 2000-2002 limited the availability of camping and day-use beaches in Forgotten and Moqui Canyons. Although more beach areas were exposed during this period, the steep slopes of the beaches made it difficult to use the beaches for camping purposes. Side canyon waters of Knowles, Forgotten, and Moqui Canyons were similarly stratified (physically and chemically) during the study from natural advective and convective reservoir processes. Metalimnetic oxygen minimas were observed in September 2001 and 2002 in the side canyons and the main body of Lake Powell. Chemical concentrations of several organic constituents were elevated in Forgotten and Moqui Canyons during the high-use period in September of 2001 and 2002 compared with concentrations during the low-use period in May of 2001 and 2002. Concentrations of some constituents decreased from the mouth of each canyon to the canyon's headwaters, indicating that there could be a mechanism for constituent removal or that the main body of Lake Powell is not in equilibrium with the headwaters of the side canyons. Concentrations of volatile organic compounds, such as benzene, toluene, ethylbenzene, and xylene (BTEX compounds), were highest in the upper reaches of Forgotten and Moqui Canyons where visitor use was greatest. Trace amounts of some organic wastewater compounds, including cholesterol, N,N-diethyl-meta-toluamide (DEET), and ethylenediaminetetraacetic acid (EDTA), were measured in Forgotten and Moqui Canyons. Except for minor concentrations of some volatile organic compounds and cholesterol, contamination from visitor use in Knowles Canyon was not detected, most likely because the canyon was closed to access. Concentrations of some organic compounds in bed material sampled in the side canyons near popular beach areas, including polyaromatic hydrocarbons, were above the laboratory detection limits. Several other constituents were present in trace amounts. Benzyl n-butylphthalate and bis (2 ethyl)-phthalate were detected at concentrations above laboratory detection limits. Numerous trace elements were detected above laboratory detection limits in Knowles, Forgotten, and Moqui Canyons. All water samples from the side canyon transects had low colony counts of Escherichia coli (E. coli); the highest count was less than one-fourth of the U.S. Environmental Protection Agency recommended limit for recreational water. Four water samples collected near beaches in Moqui Canyon had E. coli colony counts that exceeded the U.S. Environmental Protection Agency recommended limit.

Arizona, Utah↗

USGS2012

Evaluation of effects of changes in canal management and precipitation patterns on salinity in Biscayne Bay, Florida, using an integrated surface-water/groundwater model

Biscayne National Park, located in Biscayne Bay in southeast Florida, is one of the largest marine parks in the country and sustains a large natural marine fishery where numerous threatened and endangered species reproduce. In recent years, the bay has experienced hypersaline conditions (salinity greater than 35 practical salinity units) of increasing magnitude and duration. Hypersalinity events were particularly pronounced during April to August 2004 in nearshore areas along the southern and middle parts of the bay. Prolonged hypersaline conditions can cause degradation of water quality and permanent damage to, or loss of, brackish nursery habitats for multiple species of fish and crustaceans as well as damage to certain types of seagrasses that are not tolerant of extreme changes in salinity. To evaluate the factors that contribute to hypersalinity events and to test the effects of possible changes in precipitation patterns and canal flows into Biscayne Bay on salinity in the bay, the U.S. Geological Survey constructed a coupled surface-water/groundwater numerical flow model. The model is designed to account for freshwater flows into Biscayne Bay through the canal system, leakage of salty bay water into the underlying Biscayne aquifer, discharge of fresh and salty groundwater from the Biscayne aquifer into the bay, direct effects of precipitation on bay salinity, indirect effects of precipitation on recharge to the Biscayne aquifer, direct effects of evapotranspiration (ET) on bay salinity, indirect effects of ET on recharge to the Biscayne aquifer, and maintenance of mass balance of both water and solute. The model was constructed using the Flow and Transport in a Linked Overland/Aquifer Density Dependent System (FTLOADDS) simulator, version 3.3, which couples the two-dimensional, surface-water flow and solute-transport simulator SWIFT2D with the density-dependent, groundwater flow an solute-transport simulator SEAWAT. The model was calibrated by a trial-and-error method to fit observed groundwater heads, estimated base flow, and measured bay salinity and temperatures from 1996 to 2004, as well as the location of the freshwater-saltwater interface in the aquifer, by adjusting ET rate limiters, canal vertical hydraulic conductance, leakage rate coefficients (transition-layer thickness and hydraulic conductivity), Manning's n value, and delineation of rainfall zones. Although flow budget calculations indicate that precipitation, ET, and groundwater flux into the bay represent a small portion of the overall budget, these factors may be important in controlling salinity in some parts of the bay, for example the southern parts of the bay where the canal system is not extensively developed or controlled. The balance of precipitation and ET during the wet season generally results in a reduction of bay salinity, whereas the balance of precipitation and ET during the dry season generally results in an increase in bay salinity. During years when wet season precipitation is lower than average, for example less than 70 percent total precipitation for an average year, ET could outweigh precipitation over the bay for essentially the entire year. Hypersaline conditions are prone to occur near the end of the dry season because precipitation rates are generally lower, canal discharge rates (which are strongly correlated to precipitation rates) are also generally lower, and ET rates are higher than during the rest of the year. The hypersalinity event of 2004 followed several years of relatively low precipitation and correspondingly reduced canal structure releases and was unusually extensive, continuing into July. Thus, hypersalinity is ultimately the result of a cumulative deficit of precipitation. The model was used to test the effects of possible changes in canal flux and precipitation. Simulation results showed that by increasing, reducing, or modifying canal discharge rates, the effects on salinity in the bay were more pronounced in the northern part of the bay where there are more canals and canal-control structures. By doubling and halving precipitation, the effects on bay salinity were more pronounced in the southern part of the bay than in the northern part of the bay where there are fewer canals and canal-control structures. The model is designed to quantify factors that contribute to hypersaline conditions in Biscayne Bay and may be less appropriate for addressing other issues or examining conditions substantially different from those described in this report. Model results must be interpreted in light of model limitations, which include representation of the system and conceptual model, uncertainty in physical properties used to describe the system or processes, the scale and discretization of the system, and representation of the boundary conditions.

Florida↗

USGS2005

Effects of removing Good Hope Mill Dam on selected physical, chemical, and biological characteristics of Conodoguinet Creek, Cumberland County, Pennsylvania

The implications of dam removal on channel characteris-tics, water quality, benthic invertebrates, and fish are not well understood because of the small number of removals that have been studied. Comprehensive studies that document the effects of dam removal are just beginning to be published, but most research has focused on larger dams or on the response of a sin-gle variable (such as benthic invertebrates). This report, pre-pared in cooperation with the Conodoguinet Creek Watershed Association, provides an evaluation of how channel morphol-ogy, bed-particle-size distribution, water quality, benthic inver-tebrates, fish, and aquatic habitat responded after removal of Good Hope Mill Dam (a small 'run of the river' dam) from Conodoguinet Creek in Cumberland County, Pa. Good Hope Mill Dam was a 6-foot high, 220-foot wide concrete structure demolished and removed over a 3-day period beginning with the initial breach on November 2, 2001, at 10:00 a.m. eastern standard time. To isolate the effects of dam removal, data were collected before and after dam removal at five monitoring stations and over selected reaches upstream, within, and downstream of the impoundment. Stations 1, 2, and 5 were at free-flowing control locations 4.9 miles upstream, 2.5 miles upstream, and 5 miles downstream of the dam, respec-tively. Stations 3 and 4 were located where the largest responses were anticipated, 115 feet upstream and 126 feet downstream of the dam, respectively Good Hope Mill Dam was not an effective barrier to sedi-ment transport. Less than 3 inches of sediment in the silt/clay-size range (less than 0.062 millimeters) coated bedrock within the 7,160-foot (1.4-mile) impoundment. The bedrock within the impoundment was not incised during or after dam removal, and the limited sediment supply resulted in no measurable change in the thalweg elevation downstream of the dam. The cross-sec-tional areas at stations 3 and 4, measured 17 days and 23 months after dam removal, were within 3 percent of the area measured before removal. Some of the impounded silt/clay at station 3 and other sed-iment in the work area downstream of the dam were initially entrained over the 3-day removal period and deposited on sub-strate at station 4. Remaining silt/clay at station 3 and deposits at station 4 were transported downstream by the flows mea-sured over the 23 months after removal (daily mean flow ranged from 38 to 5,180 cubic feet per second). The median bed-parti-cle size at station 3 increased by approximately 32 millimeters in the 23-month period after removal. Bed-particle-size distri-bution at station 4 became finer when silt/clay was initially deposited but coarsened as high flows flushed it downstream; median bed-particle size was 77.7 millimeters before removal compared to 31.3 millimeters 17 days after removal and 99 mil-limeters 23 months after removal. Good Hope Mill Dam had either no effect on water-quality characteristics or the effect was so small it was masked by sea-sonal and periodic variability. Measurements of daily mean temperature, dissolved-oxygen concentration, pH, and specific conductance on a short time scale (every 15 minutes) indicate the daily range of temperature was suppressed under impounded conditions and daily extremes of temperature, dis-solved-oxygen concentration, pH, and specific conductance at station 2 were out of phase by approximately 12 hours with station 3. Once the dam was removed, the pattern at station 3 shifted and converged with the pattern at station 2. The offset before removal may be related to a lag time resulting from a decrease in velocity through the impoundment. Total nitrogen and suspended-sediment concentrations increased upon the initial dam breach but were within the range of concentrations measured from March 2001 through April 2002 over varying flow conditions at station 1. Total nitrogen concentration at station 4 was 4.66 milligrams per liter upon the initial breach of the dam,

Pennsylvania↗

USGS2014

California State Waters Map Series — Offshore of San Gregorio, California

In 2007, the California Ocean Protection Council initiated the California Seafloor Mapping Program (CSMP), designed to create a comprehensive seafloor map of high-resolution bathymetry, marine benthic habitats, and geology within the 3-nautical-mile limit of California's State Waters. The CSMP approach is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data, acoustic backscatter, seafloor video, seafloor photography, high-resolution seismic-reflection profiles, and bottom-sediment sampling data. The map products display seafloor morphology and character, identify potential marine benthic habitats, and illustrate both the surficial seafloor geology and shallow (to about 100 m) subsurface geology. The Offshore of San Gregorio map area is located in northern California, on the Pacific coast of the San Francisco Peninsula about 50 kilometers south of the Golden Gate. The map area lies offshore of the Santa Cruz Mountains, part of the northwest-trending Coast Ranges that run roughly parallel to the San Andreas Fault Zone. The Santa Cruz Mountains lie between the San Andreas Fault Zone and the San Gregorio Fault system. The nearest significant onshore cultural centers in the map area are San Gregorio and Pescadero, both unincorporated communities with populations well under 1,000. Both communities are situated inland of state beaches that share their names. No harbor facilities are within the Offshore of San Gregorio map area. The hilly coastal area is virtually undeveloped grazing land for sheep and cattle. The coastal geomorphology is controlled by late Pleistocene and Holocene slip in the San Gregorio Fault system. A westward bend in the San Andreas Fault Zone, southeast of the map area, coupled with right-lateral movement along the San Gregorio Fault system have caused regional folding and uplift. The coastal area consists of high coastal bluffs and vertical sea cliffs. Coastal promontories in the northern and southern parts of the map area are the result of right-lateral motion on strands of the San Gregorio Fault system. In the south, headlands near Pescadero Point have been uplifted by motion along the west strand of the San Gregorio Fault (also called the Frijoles Fault), which separates rocks of the Pigeon Point Formation south of the fault from rocks of the Purisima Formation north of the fault. The regional uplift in this map area has caused relatively shallow water depths within California's State Waters and, thus, little accommodation space for sediment accumulation. Sediment is observed offshore in the central part of the map area, in the shelter of the headlands north of the east strand of the San Gregorio Fault (also called the Coastways Fault) around Miramontes Point (about 5 km north of the map area) and also on the outer half of the California's State Waters shelf in the south where depths exceed 40 m. Sediment in the outer shelf of California's State Waters is rippled, indicating some mobility. The Offshore of San Gregorio map area lies within the cold-temperate biogeographic zone that is called either the "Oregonian province" or the "northern California ecoregion." This biogeographic province is maintained by the long-term stability of the southward-flowing California Current, an eastern limb of the North Pacific subtropical gyre that flows from Oregon to Baja California. At its midpoint off central California, the California Current transports subarctic surface (0–500 m deep) waters southward, about 150 to 1,300 km from shore. Seasonal northwesterly winds that are, in part, responsible for the California Current, generate coastal upwelling. The south end of the Oregonian province is at Point Conception (about 350 km south of the map area), although its associated phylogeographic group of marine fauna may extend beyond to the area offshore of Los Angeles in southern California. The ocean off of central California has experienced a warming over the last 50 years that is driving an ecosystem shift away from the productive subarctic regime towards a depopulated subtropical environment. Seafloor habitats in the Offshore of San Gregorio map area, which lies within the Shelf (continental shelf) megahabitat, range from significant rocky outcrops that support kelp-forest communities nearshore to rocky-reef communities in deep water. Biological productivity resulting from coastal upwelling supports diverse populations of sea birds such as Sooty Shearwater, Western Gull, Common Murre, Cassin's Auklet, and many other less populous bird species. In addition, an observable recovery of Humpback and Blue Whales has occurred in the area; both species are dependent on coastal upwelling to provide nutrients. The large extent of exposed inner shelf bedrock supports large forests of "bull kelp," which is well adapted for high wave-energy environments. Common fish species found in the kelp beds and rocky reefs include lingcod and various species of rockfish and greenling.

California↗

USGS2000

Effects of alternative Missouri River management plans on ground-water levels in the lower Missouri River flood plain

In 1998, the U.S. Army Corps of Engineers (USACE) proposed eight Alternative River Management Plans (ARMPs) for managing reservoir levels and water-release rates for the Missouri River. The plans include the Current Water Control Plan (CWCP), Conservation 18, 31, and 44 (C18, C31, and C44) that provide different levels of water conservation in the reservoirs during droughts, Fish and Wildlife 10, 15, and 20 (FW10, FW15, and FW20) that vary water-release rates to provide additional fish and wildlife benefits, and Mississippi River 66 (M66) that maintains a 66,000 cubic feet per second discharge at St. Louis to provide navigation support for the Mississippi River. Releases from Gavin?s Point Dam affect both the lower 1,305 kilometers of the Missouri River and ground-water levels in the lower Missouri River flood plain. Changes in the magnitude and timing of ground-water-level fluctuations in response to changes in river management could impact agriculture, urban development, and wetland hydrology along the lower Missouri River flood plain. This study compared simulated ground-water altitude and depth to ground water for the CWCP in the Missouri River alluvial aquifer near the Kansas City area between 1970 and 1980 with each ARMP, determined the average change in simulated ground-water level for selected river-stage flood pulses at selected distances from the river, and compared simulated flood pulse, ground-water responses with actual flood pulse, and ground-water responses measured in wells located at three sites along the lower Missouri River flood plain.For the model area, the percent total shallow ground-water area (depth to ground water less than 0.3048 meter) is similar for each ARMP because of overall similarities in river flow between ARMPs. The percent total shallow ground-water area for C18 is the most similar to CWCP followed by C31, M66, C44, FW10, FW15, and FW20. ARMPs C18, C31, C44, and M66 do not cause large changes in the percent shallow ground-water area when compared to CWCP. FW10 and FW15 each cause a spring increase and a summer decrease in the shallow ground-water area. FW20 has a larger spring increase in the shallow ground-water area, but the largest decrease is delayed into November. Analysis of daily changes between the ARMPs indicate large differences can exist in both duration and extent of shallow ground-water areas.A series of 12 flood pulses of 0.5-, 1-, and 3-meters in magnitude and 1-, 8-, 32-, and 128-days in duration were simulated using the ground-water flow model. A ground-water response factor (GWRF, defined as the change in ground-water level at a known distance from the river, at a specified time after the beginning of a flood pulse divided by the magnitude of the flood pulse) was determined daily for selected distances from the river. The GWRF multiplied by the magnitude of the flood pulse can be used to estimate the change in ground-water level at a known time after the beginning of a flood pulse for a known distance from the river. Flood-pulse simulation results indicate the relatively small impact on ground-water levels of small river-stage fluctuations of short duration as might occur daily or weekly. The larger impact on ground-water levels from larger river-stage increases of longer duration indicate the importance of river management flow releases, seasonal changes in river flow, and the effects of continuous high-river stage for long periods on ground-water levels of the lower Missouri River flood plain.A comparison of model results to well hydrographs from three areas along the lower Missouri River flood plain was used to determine how closely the simulated GWRFs matched the measured GWRFs for similar flood pulses and the transferability of GWRFs to other parts of the lower Missouri River flood plain. The comparison between the measured and simulated ground-water responses indicate that the simulated ground-water responses can provide a reasonable estimate of the ground-water resp

Water-Resources Investigations Report↗

USGS2013

Assessment of water-quality data from Long Lake National Wildlife Refuge, North Dakota--2008 through 2012

ong Lake National Wildlife Refuge, located in south-central North Dakota, is an important habitat for numerous migratory birds and waterfowl, including several threatened or endangered species. The refuge is distinguished by Long Lake, which is approximately 65 square kilometers and consists of four primary water management units. Water levels in the Long Lake units are maintained by low-level dikes and water-control structures, which after construction during the 1930s increased the water-storage capacity of Long Lake and reduced the frequency and volume of flushing flows downstream. The altered water regime, along with the negative precipitation:evaporation ratio of the region, may be contributing to the accumulation of water-borne chemical constituents such as salts, trace metals, and other constituents, which at certain threshold concentrations may impair aquatic plant, invertebrate, and bird communities of the refuge. The refuge’s comprehensive conservation planning process identified the need for water-quality monitoring to assess current (2013) conditions, establish comparative baselines, evaluate changes over time (trends), and support adaptive management of the wetland units. In 2008, the U.S. Geological Survey, U.S. Fish and Wildlife Service, and North Dakota Department of Health began a water-quality monitoring program at Long Lake National Wildlife Refuge to address these needs. Biweekly water-quality samples were collected for ions, trace metals, and nutrients; and in situ sensors and data loggers were installed for the continuous measurement of specific conductance and water depth. Long Lake was characterized primarily by sodium, bicarbonate, and sulfate ions. Overall results for total alkalinity and hardness were 580 and 329 milligrams per liter, respectively; thus, Long Lake is considered alkaline and classified as very hard. The mean pH and sodium adsorption ratio for Long Lake were 8.8 and 10, respectively. Total dissolved solids concentrations averaged approximately 1,750 milligrams per liter, and ranged from 117 to 39,700 milligrams per liter. Twelve of the 14 trace metals detected in the water samples had established North Dakota water-quality standards for aquatic life, and only aluminum and copper consistently exceeded these criteria. Aluminum is considered harmful to aquatic biota in acidic (pH less than 5.5) systems and most of the copper standard exceedances were collected from highly concentrated waters because of evaporation and seasonally low water levels. Concentrations for various forms of nitrogen and phosphorus generally were similar to reported regional values. Specific conductance of Long Lake varied seasonally and annually both within and among management units, with values ranging from less than 500 to nearly 40,000 microsiemens per centimeter at 25 degrees Celsius. Long Lake was characterized by consistent seasonal patterns of increasing specific conductance from spring (March and April) to fall (September and October), with levels stabilizing through the end of the sampling season (November). These seasonal patterns in specific conductance were associated with decreasing water levels throughout the summer due primarily to evaporation and continuous water releases through the Unit 1 outlet structure, which resulted in the concentration of salts. Specific conductance of each unit, along with water levels, also varied among years. Overall, specific conductance levels were greatest during the drier year of 2008 when water levels were low. Specific conductance levels were lowest during the spring of 2009 following above-average volumes of fresh water from snowmelt runoff. Comparisons of specific conductance among sample sites that were spatially distributed within each management unit suggested that spatial variability within units was low except for areas associated with local inflows. Data collected during this study revealed consistent seasonal patterns and low within-unit spatial variability of specific conductance. Based on these data results, future sample collection efforts may be reduced, as well as the number of sample locations, to limit sampling costs. Water-quality samples collected monthly or seasonally during the growing season (spring, summer, and fall) from a single representative location within each water-management unit should provide sufficient data to assess seasonal changes in water-quality over time and provide information for Long Lake management decisions.

North Dakota↗

USGS2015

Hydraulic, geomorphic, and trout habitat conditions of the Lake Fork of the Gunnison River in Hinsdale County, Lake City, Colorado, Water Years 2010-2011

Channel rehabilitation, or reconfiguration, to mitigate a variety of riverine problems has become a common practice in the western United States. However, additional work to monitor and assess the channel response to, and the effectiveness of, these modifications over longer periods of time (decadal or longer) is still needed. The Lake Fork of the Gunnison River has been an area of active channel modification to accommodate the needs of the Lake City community since the 1950s. The Lake Fork Valley Conservancy District began a planning process to assess restoration options for a reach of the Lake Fork in Lake City to enhance hydraulic and ecologic characteristics of the reach. Geomorphic channel form is affected by land-use changes within the basin and geologic controls within the reach. The historic channel was defined as a dynamic, braided channel with an active flood plain. This can result in a natural tendency for the channel to braid. A braided channel can affect channel stability of reconfigured reaches when a single-thread meandering channel is imposed on the stream. The U.S. Geological Survey, in cooperation with the Colorado Water Conservation Board and Colorado River Water Conservation District, began a study in 2010 to quantify existing hydraulic and habitat conditions for a reach of the Lake Fork of the Gunnison River in Lake City, Colorado. The purpose of this report is to quantify existing Lake Fork hydraulic and habitat conditions and establish a baseline against which post-reconfiguration conditions can be compared. This report (1) quantifies the existing hydraulic and geomorphic conditions in a 1.1-kilometer section of the Lake Fork at Lake City that has been proposed as a location for future channel-rehabilitation efforts, (2) characterizes the habitat suitability of the reach for two trout species based on physical conditions within the stream, and (3) characterizes the current riparian canopy density. The FaSTMECH computational flow-model within MD_SWMS was selected to characterize the effects of streamflow on hydraulic and habitat-suitability conditions for a study reach of the Lake Fork. Habitat suitability was evaluated for cutthroat ( Oncorhynchus clarkii ) and brown trout ( Salmo trutta morpha fario ) fry, juveniles, and adults. Microscale (point locations) and mesoscale (reach features) habitats were assessed using the combination of field observations, measurements, and hydraulic simulations within the study reach of the Lake Fork. Microscale trout habitat, presented as weighted usable area, generally increased as streamflow increased for both trout species and all life stages. Areas of suitable microscale habitat occur along the banks for flows of 900 cubic feet per second (ft 3 /s) and less. Out-of-bank areas became more substantial contributors to overall habitat availability for flows of 1,300 ft 3 /s or more when compared to other features. Adult habitat, for both trout species, was the most abundant habitat type for nearly all streamflows. In general, the upper reach provided 2–3 times more available habitat than the lower reach for both trout species. Mesoscale trout habitat of the Lake Fork was assessed based on the conditions present in the 150 ft 3 /s flow simulation as well as field observation. Both the upper and lower reach is primarily characterized as riffle/run habitat. The presence of pool habitat was limited throughout both reaches and occurred along the channel margins. For both reaches, the pool habitat was less than 5 percent of the total wetted area, a percentage that is substantially lower than the recommendations for sustainable populations of 40–70 percent. Areas of cover were adjacent to potential drift feeding areas in the lower reach, and often occurred within the same pool habitat. This may favor energy expenditure ratios of both fish species, wherein little energy is needed to acquire adequate food sources. Sediment mobility is an important process for flushing fine sediments from within the gravel frameworks. Evaluations of channel and flow characteristics at cross-section locations 2–8 show a range of streambed mobility. In general, boundary shear stress and streambed mobility increase with increases in streamflow. Within the cross sections, the greatest boundary shear stress occurs towards the center of the channel. Reach-scale assessment of sediment mobility in the lower reach shows increased streambed mobility. This is due in part to smaller grain sizes in the lower reach, but may also reflect the greater extent of channel alterations, specifically the temporary berms constructed by CDOT in the late 1980s and 1990s, present in this reach.

Colorado↗

USGS2012

Flow-adjusted trends in dissolved selenium load and concentration in the Gunnison and Colorado Rivers near Grand Junction, Colorado, water years 1986--2008

As a result of elevated selenium concentrations, many western Colorado rivers and streams are on the U.S. Environmental Protection Agency 2010 Colorado 303(d) list, including the main stem of the Colorado River from the Gunnison River confluence to the Utah border. Selenium is a trace metal that bioaccumulates in aquatic food chains and can cause reproductive failure, deformities, and other adverse impacts in birds and fish, including several threatened and endangered fish species. Salinity in the upper Colorado River has been the focus of source-control efforts for many years. Although salinity loads and concentrations have been previously characterized at the U.S. Geological Survey (USGS) streamflow-gaging stations at the Gunnison River near Grand Junction, Colo., and at the Colorado River near the Colorado-Utah State line, trends in selenium load and concentration at these two stations have not been studied. The USGS, in cooperation with the Bureau of Reclamation and the Colorado River Water Conservation District, evaluated dissolved selenium (herein referred to as "selenium") load and concentration trends at these two sites to inform decision makers on the status and trends of selenium. This report presents results of the evaluation of trends in selenium load and concentration for two USGS streamflow-gaging stations: the Gunnison River near Grand Junction, Colo. ("Gunnison River site"), USGS site 09152500, and the Colorado River near Colorado-Utah State line ("Colorado River site"), USGS site 09163500. Flow-adjusted selenium loads were estimated for the beginning water year (WY) of the study, 1986, and the ending WY of the study, 2008. The difference between flow-adjusted selenium loads for WY 1986 and WY 2008 was selected as the method of analysis because flow adjustment removes the natural variations in load caused by changes in mean-daily streamflow, emphasizing human-caused changes in selenium load and concentration. Overall changes in human-caused effects in selenium loads and concentrations during the period of study are of primary interest to the cooperators. Selenium loads for each of the 2 water years were calculated by using normalized mean-daily streamflow, measured selenium concentration, standard linear regression techniques, and data previously collected at the two study sites. Mean-daily streamflow was normalized for each site by averaging the daily streamflow for each day of the year over the 23-year period of record. Thus, for the beginning and ending water years, estimations could be made of loads that would have occurred without the effect of year-to-year streamflow variation. The loads thus calculated are illustrative of the change in loads between water years 1986 and 2008, and are not the actual loads that occurred in those 2 water years. The estimated 50th and 85th percentile selenium concentrations associated with the selenium loads were also calculated for WY 1986 and WY 2008 at each site. Time-trends in selenium concentration at the two sites were charted by using regression techniques for partial residuals for the entire study period (WY 1986 through WY 2008). Annual selenium load for the Gunnison River site was estimated to be 23,196 pounds for WY 1986 and 16,560 pounds for WY 2008, a 28.6 percent decrease. Lower and upper 95-percent confidence levels for WY 1986 annual load were 22,360 and 24,032 pounds. Lower and upper 95-percent confidence levels for WY 2008 annual load were 15,724 and 17,396 pounds. Estimated 50th percentile daily selenium concentrations decreased from 6.41 to 4.57 micrograms/liter from WY 1986 to WY 2008, whereas estimated 85th percentile daily selenium concentrations decreased from 7.21 to 5.13 micrograms/liter from WY 1986 to WY 2008. Annual selenium load for the Colorado River site was estimated to be 56,587 pounds for WY 1986 and 34,344 pounds for WY 2008, a 39.3 percent decrease. Lower and upper 95-percent confidence levels for WY 1986 annual load were 53,785 and 59,390 pounds. Lower and upper 95-percent confidence levels for WY 2008 annual load were 31,542 and 37,147 pounds. Estimated 50th percentile daily selenium concentrations decreased from 6.44 to 3.86 micrograms/liter from WY 1986 to WY 2008, whereas estimated 85th percentile daily selenium concentrations decreased from 7.94 to 4.72 micrograms/liter from WY 1986 to WY 2008.

Colorado↗

USGS1976

Recycling ground water in Waushara County, Wisconsin : resource management for cold-water fish hatcheries

Recycling water within the local ground-water system can increase the quantity of water available for use, control or avoid environmental pollution, and control temperature of the water supply. Pumped ground water supplied a fish-rearing facility for 15 months, and the waste water recharged the local ground-water system through an infiltration pond. Eighty-three percent of the recharged water returned to the well (recycled). Make-up water from the ground-water system provided the remaining 17 percent. Pumping 300 gallons per minute (20 litres per second), combined with recycling, resulted in water-level declines equivalent to a pumping rate of approximately 50 gallons per minute (3 litres per second). Using this effective pumping rate in the Theis nonequilibrium equation resulted in predicted drawdowns within 0.5 foot (0.2 metres) of those observed throughout the 15-month period. The concentration of nitrate in the water supply increased only slightly during the 15 months of recycling. Nitrate levels in a closed recycling system (100 percent recycling efficiency) would have reached 9 milligrams per litre, but observed levels did not exceed 4 milligrams per litre, and at the end of the recycling period they were lower than the initial levels. Mass-balance equations relate observed nitrate levels to the loading imposed on the system, the pumping rate, the volume of ground water affected by recycling, and the recycling efficiency. The equations predict nitrate concentrations (or other ions not attenuated by movement through the unsaturated part of the aquifer) within 1 milligram per litre of observed concentrations except during periods when nutrients are used in plant growth. The method does not account for nutrients utilized by aquatic vegetation in the infiltration pond, so that observed levels would usually be even lower than predicted. The predicted response of the local groundwater system to a nutrient loading equivalent to that generated by a hatchery producing approximately 100,000 pounds (50,000 kilograms) of trout and salmon per year indicates that maximum nitrate levels would remain significantly below the limit established by the State of Wisconsin (and the U.S. Public Health Service, 1962) for drinking water. The water-supply temperature can be maintained within the optimum range for trout and salmon rearing (10.0° to 15.5°C or 50° to 60°F) during recycling. Continuous recycling during the study period resulted in watersupply temperatures ranging between 7.0° and 14.0°C (45° and 57°F). Longterm continuous recycling would result in water-supply temperatures ranging between 7.0° and 14.5°C (45° and 58°F). Selective recycling (recycling water for only 8 months of the year) would provide water-supply temperatures ranging from 9.5° to 15.5°C (49° to 60°F). A permanent recharge pond with supplementary ponds would fulfill the needs of a hatchery development at the Greenwood Wildlife Refuge site, Waushara County, Wisconsin, and insure protection of the ground-water system. Eighty percent or more of the water pumped could be recycled by recharging waste water near the supply well. Selective recycling (recharging water to the ground-water system outside the zone of recycling during approximately 4 months of each year) could maintain optimum water-supply temperatures, reduce water-level declines by 50 percent (compared to no recycling), maintain nitrate levels in the water supply below limits established for drinking water supplies, and minimize the effect of water-supply development on the regional ground-water system. Other recharge-recycling schemes can also be evaluated. Estimating the recycling efficiency (of recharge ponds, trenches, spreading areas, or irrigated fields) provides a basis for predicting water-level declines, the concentration of conservative ions (conservative in the sense that no reaction other than mixing occurs to change the character of the ion being considered) in the water supply and in the regional ground-water system, and the temperature of the water supply. Hatchery development and management schemes can be chosen to optimize hatchery productivity or minimize operation costs while protecting the ground-water system.

Wisconsin↗

USGS2004

Effects of flow modification on a cattail wetland at the mouth of Irondequoit Creek near Rochester, New York: Water levels, wetland biota, sediment, and water quality

An 11-year (1990-2001) study of the Ellison Park wetland, a 423-acre, predominantly cattail (Typha glauca) wetland at the mouth of Irondequoit Creek, was conducted to document the effects that flow modifications, including installation of a flow-control structure (FCS) in 1997 and increased diversion of stormflows to the backwater areas of the wetland, would have on the wetland's ability to decrease chemical loads transported by Irondequoit Creek into Irondequoit Bay on Lake Ontario. The FCS was designed to raise the water-surface elevation and thereby increase the dispersal and detention of stormflows in the upstream half of the wetland; this was expected to promote sedimentation and microbial utilization of nutrients, and thereby decrease the loads of certain constituents, primarily phosphorus, that would otherwise be carried into Irondequoit Bay. An ecological monitoring program was established to document changes in the wetland's water levels, biota, sedimentation rates, and chemical quality of water and sediment that might be attributable to the flow modifications. Water-level increases during storms were mostly confined to the wetland area, within about 5,000 ft upstream from the FCS. Backwater at a point of local concern, about 13,000 ft upstream, was due to local debris jams or constriction of flow by bridges and was not attributable to the FCS. Plant surveys documented species richness, concentrations of nutrients and metals in cattail tissues, and cattail productivity. Results indicated that observed differences among survey periods and between the areas upstream and downstream from the FCS were due to seasonal changes in water levels—either during the current year or at the end of the previous year's growing season—that reflected the water-surface elevation of Lake Ontario, rather than water-level control by the FCS. Results showed no adverse effects from the naturally high water levels that prevail annually during the spring and summer in the wetland, nor from the short-duration increases in water levels that result from FCS operation. Fish surveys documented the use of the wetland by 44 species, of which 25 to 29 species were found in any given year. Community composition was relatively consistent during the study, but seasonal and year-to-year variations in dominant resident and nonresident species were noted, and probably reflected natural or regional population patterns in Lake Ontario and Irondequoit Bay. The FCS allowed fish passage at all water levels and had no discernible adverse effect on the fish community. Bird surveys documented the use of the wetland by more than 90 species for breeding, feeding, and migration. Ground-nesting birds were unaffected by the FCS. Seasonally high water levels, rather than short-duration increases caused by the FCS, might have caused the scarcity or absence of certain wetland species by limiting the extent of breeding habitat for some species and the exposure of mud flats that attracted other species. Some noticeably scarce or absent species also were rare or absent elsewhere along the south-central shore of Lake Ontario. Benthic-macroinvertebrate studies were of minimal use for evaluating the effect of the FCS because no surveys were conducted after FCS installation. The precontrol results allowed assessment of the ecological quality of the wetland on the basis of biotic indices, and generally indicated moderately to severely impaired conditions. Differences between the macroinvertebrate communities in the southern part of the wetland and those in the northern part were attributed to habitat differences, such as substrate composition, water depth, and density of submerged aquatic vegetation. Sedimentation rates in the areas upstream and downstream from the FCS increased after the flow modifications, more in the area upstream from the FCS than in the downstream area. The concurrent downstream increase and the dynamic patterns of deposition and scour indicated that although the FCS and the other flow modifications undoubtedly were major factors in the postcontrol upstream increase in sedimentation rates, other factors, such as the magnitude, frequency, and the timing (season) of peak flows, might also have contributed. Periodic analyses of sediment samples from three longterm depositional sites in the wetland documented the concentrations of major and trace elements, polycyclic aromatic hydrocarbons, and organochlorine and organophosphate compounds. The concentrations of most constituents showed no substantial fluctuation or consistent upward or downward trend during the years sampled, nor did they identify any change after FCS installation. Comparison of the measured concentrations with sediment-quality guidelines that are used to assess the ecological quality of substrate environments indicated that the wetland was moderately to severely impaired—an assessment consistent with the benthic-macroinvertebrate biotic indices. During the precontrol period (1990–96), the wetland was a sink for particulate constituents (removal efficiencies for total phosphorus and total suspended solids were 28 and 47 percent, respectively), but had little effect on conservative constituents (chloride and sulfate). The wetland was a source of orthophosphate and ammonia (removal efficiencies were -38 and -84 percent, respectively). During the postcontrol period (1997–2001), the wetland continued to be a sink for particulate constituents (removal efficiencies for total phosphorus and total suspended solids were 45 and 52 percent, respectively); the exportation of orthophosphate by the wetland decreased (by 7 percent), whereas that of ammonia increased (by about 70 percent). The outflow loads of orthophosphate and ammonia represented about 15 and 2.3 percent of total phosphorus and total nitrogen loads, respectively. Changes in the loads of conservative constituents were negligible, and the overall removal efficiencies for other constituents during the precontrol period differed from those of the postcontrol period by no more than 5.4 percent. Statistical analyses of monthly inflow and outflow loads indicated significant differences between inflow and outflow loads of most constituents during the pre- and postcontrol periods. Load data were adjusted to remove the effects of dissimilar hydrologic conditions that prevailed during the pre- and postcontrol periods, and to isolate the water-quality-improvement effect that could be attributed solely to the FCS. Results indicated that the FCS contributed significantly to the decrease in total phosphorus loads, and slightly to a decrease in ammonia-plus-organic nitrogen loads, but had little or no significant effect on loads of other constituents.

New York↗

USGS2000

Hydrology and water and sediment quality at James Campbell National Wildlife Refuge near Kahuku, Island of Oahu, Hawaii

The James Campbell National Wildlife Refuge occupies two lowland marsh and pond complexes on the northern coastal plain of Oahu: the mostly natural ponds and wetlands of the Punamano Unit and the constructed ponds of the Kii Unit. The U.S. Fish and Wildlife Service manages the Refuge primarily to protect and enhance habitat for four endangered species of Hawaiian waterbirds. Kii Unit is fed by artesian wells and rainfall, whereas Punamano Unit is fed naturally by rainfall, runoff, and ground-water seepage. Streams drain from the uplands into lowland ditches that pass through Kii Unit on their way to the ocean. A high-capacity pump transfers water from the inner ditch terminus at Kii to the ocean outlet channel. Stormwaters also exit the inner ditch system over flood-relief swales near the outlet pump and through a culvert with a one-way valve. A hydrologic investigation was done from November 1996 through February 1998 to identify and quantify principal inflows and outflows of water to and from the Refuge, identify hydraulic factors affecting flooding, document ground-water/surface-water interactions, determine the adequacy of the current freshwater supply, and determine water and sediment quality. These goals were accomplished by installing and operating a network of stream-gaging stations, meteorology stations, and shallow ground-water piezometers, by computing water budgets for the two Refuge units, and by sampling and analyzing water and pond-bottom sediments for major ions, trace metals, and organic compounds. Streamflow during the study was dominated by winter stormflows, followed by a gradual recession of flow into summer 1997, as water that had been stored in alluvial fans drained to lowland ditches. Outflow at the ditch terminus in 1997 was 125 million gallons greater than measured inflow to the coastal plain, mainly reflecting gains from ground water along the ditches between outlying gages and the ditch terminus. Of the measured 1997 outflow, 98 percent was through the Kii outlet pump, with the outlet culvert valve only opening for brief periods during storms. Large volumes of stormflow overflowed the flood-relief swales unmeasured. The largest storm of the study, in November 1996, was estimated to have a flood frequency of about 3 to 4 years. Streamflow exceeded culvert capacity and overtopped Kamehameha Highway at Kalaeokahipa Stream and Hospital ditch. Slight overbank flooding in Kii ditch resulted strictly from high discharge. Minor overbank flooding farther out on the coastal plain probably was caused mainly by the small hydraulic gradients available to convey stormflows along the lowland ditches. Stormwaters flooded Kii ponds and flowed back upstream along Punamano ditch into Punamano marsh, introducing suspended sediment and possibly other contaminants to the Refuge. Two smaller storms in January 1997 resulted in smaller flows and no overbank flooding. The Kii outlet pump ran continuously for 7 days during the November 1996 storm and for 1 to 2 days during the January 1997 storms. During all three storms, the outlet culvert valve opened and the inner ditches overtopped the flood-relief swales, allowing free outflow of water from the inner ditch. Backwater effects hindered drainage during the January 1997 storms at Hospital ditch at Kamehameha Highway, and at Punamano ditch at Nudist Camp Road (where the backflow into Punamano marsh in November 1996 constituted an extreme backwater effect). A probable marine backwater effect was imposed at the ocean outlet ditch during the November 1996 storm through a combination of high spring tides and wave setup from large surf. Whether this backwater effect propagated upstream in the ditches to affect inland sites could not be determined conclusively. A sand plug may have built up in the ocean outlet channel before the November 1996 storm, but if so, it probably washed out prior to, or early in the storm, and was not present at the time of peak stage at inland sites. A season-long buildup of the sand plug in late 1997 was inferred from rising water levels in the outlet ditch. Seawater flows up the outlet channel or over the sand berm and into the outer ditch system on most high tides, and particularly during spring high tides. Ponds and ditches of the Refuge and surrounding lowlands have mud- and clay-lined bottoms that form an effective confining unit and inhibit interaction with an underlying shallow limestone aquifer. At Kii Unit, pond levels are higher than adjacent ditch levels and underlying ground-water levels, establishing lateral and downward head gradients that could foster seepage losses from the ponds. Regional ground-water discharge from the Koolau aquifer to the coastal-plain sediments is mostly diffuse, but is concentrated where ridges of Koolau Basalt plunge beneath coastal-plain sediments near Punamano Unit and at the head of Hospital ditch. Kii ditch gains brackish ground water downstream of Kamehameha Highway. Wastewater disposal from the sewage treatment plant adjoining Kii Unit poses little or no threat to Refuge habitat. Disposal is at six injection wells located 0.45 mi away at Kahuku, and the wells inject into confined limestone aquifers that do not extend to Kii Unit. The natural freshwater supply to Punamano Unit is adequate for maintaining the wildlife habitat, judging from stable pond levels and low salinities there. A monthly water budget for Punamano showed an apparent annual deficit in measurable flows in 1997, requiring unmeasured ground-water gains equalling 51 inches of water. The freshwater supply to Kii Unit is inadequate according to Refuge managers, because there is not enough water to manipulate levels adequately in the ponds during most of the year, and particularly during the driest months. This is confirmed by monthly deficits in the water budget for the Kii ponds during summer months. However, the Kii budget showed an annual surplus in measurable flows for 1997 equalling 24 inches of water. Unmeasured losses are required to explain the apparent annual surplus, such as discharge to the ditches through pond water-control structures and downward and/or lateral ground-water seepage. The apparent surplus at Kii is strictly hydrologic and is not a surplus in a management sense; it cannot be stored or used to supply the Refuge, but instead reflects losses from the system that render this amount of water unavailable for use. The budget year, 1997, was drier than normal (24 percent below long-term mean rainfall) and so the measured potential evaporation for 1997 was probably higher than the long-term mean. Few metals or organic compounds of potential concern were detected in pond and ditch waters and in pond-bottom sediments. Detected pesticides were at trace levels or just above minimum reporting limits. Exceptions that exceeded quality guidelines for freshwater sediment were copper and zinc in sediment from Kii ponds C and D, and copper in sediment from Punamano north pond. Therefore, urban and agricultural runoff probably have contributed little in the way of harmful metals or organic compounds to the Refuge, although the potential for such contribution remains from periodic flooding of the ponds by ditch stormflows. Salinity was low throughout most Refuge waters, qualifying as fresh to slightly brackish and suitable for the environmental needs of Refuge fauna. Higher salinities have been observed in ditches during past periods of sugarcane cultivation and saltwater aquaculture, however. Resumption of saltwater aquaculture could raise ditch salinities if saltwater effluents are disposed directly into the ditches, as they were in the past.

Hawaii↗

USGS1999

Surface-water-quality assessment of the Yakima River basin, Washington: Overview of major findings, 1987-91

Surface-water-quality conditions were assessed in the Yakima River Basin, which drains 6,155 square miles of mostly forested, range, and agricultural land in Washington. The Yakima River Basin is one of the most intensively farmed and irrigated areas in the United States, and is often referred to as the “Nation’s Fruitbowl.” Natural and anthropogenic sources of contaminants and flow regulation control water-quality conditions throughout the basin. This report summarizes the spatial and temporal distribution, sources, and implications of the dissolved oxygen, water temperature, pH, suspended sediment, nutrient, organic compound (pesticide), trace element, fecal indicator bacteria, radionuclide, and aquatic ecology data collected during the 1987–91 water years. The Yakima River descends from a water surface altitude of 2,449 feet at the foot of Keechelus Dam to 340 feet at its mouth downstream from Horn Rapids Dam near Richland. The basin can be divided into three distinct river reaches on the basis of its physical characteristics. The upper reach, which drains the Kittitas Valley, has a high gradient, with an average streambed slope of 14 feet per mile (ft/mi) over the 74 miles from the foot of Keechelus Dam (river mile [RM] 214.5) to just upstream from Umtanum. The middle reach, which drains the Mid Valley, extends a distance of 33 miles from Umtanum (RM 140.4) to just upstream from Union Gap and also has a high gradient, with an average streambed slope of 11 ft/mi. The lower reach of the Yakima River drains the Lower Valley and has an average streambed slope of 7 ft/mi over the 107 miles from Union Gap (RM 107.2) to the mouth of the Yakima River. These reaches exhibited differences in water-quality conditions related to the differences in geologic sources of contaminants and land use. Compared with the rest of the basin, the Kittitas Valley and headwaters of the Naches River Subbasin had relatively low concentrations and loads of suspended sediment, nutrients, organic compounds, and fecal indicator bacteria. There were very few failures to meet the Washington State dissolved oxygen standard or exceedances of the water temperature and pH standards in this reach. In general, these areas are considered to be areas of lessdegraded water quality in the basin. The preTertiary metamorphic and intrusive rocks of the Cle Elum and Teanaway River Subbasins, however, were found to be significant geologic sources of antimony, arsenic, chromium, copper, mercury, nickel, selenium, and zinc. As a result, the arsenic, chromium, and nickel concentrations measured in the streambed sediment of the Kittitas Valley were 13 to 74 times higher than those measured in the Lower Valley. The Mid and Lower Valleys had similar water-quality conditions, governed by the intensive agricultural and irrigation activities, highly erosive landscapes, and flow regulation. Most of the failures to meet the Washington State standards for dissolved oxygen and exceedances of the standards for water temperature and pH occurred in the Mid and Lower Valleys. Agricultural drains in the Mid and Lower Valleys were found to be significant sources of nutrients, suspended sediment, pesticides, and fecal indicator bacteria. Downstream from the irrigation diversions near Union Gap, summertime streamflow in the Yakima River was drastically reduced to only a few hundred cubic feet per second. In the lower Yakima River, agricultural return flow typically accounts for as much as 80 percent of the main stem summertime flow near the downstream terminus of the basin. Therefore, the water-quality characteristics of the lower Yakima River resemble those of the agricultural drains. The highest fecal bacteria concentrations (35,000 colonies of Escherichia coli per 100 milliliters of water) were measured in the Granger/Sunnyside area, the location of most of the livestock in the basin. The east side area of the Lower Valley (area east of the Yakima River) was the predominant source area for suspended sediment and pesticides in the basin. This area had the largest acreage of irrigated land and generally received the largest application of pesticides. Owing to the highly erosive soils of the area, the suspended sediment load from the east side in June 1989 (320 kilograms per day) was five or more times larger than from any other area, and the loads of several of the more hydrophobic organic compounds were four or more times larger. An ecological assessment of the Yakima River Basin ranked physical, chemical, and biological conditions at impaired (degraded) sites against reference sites in an effort to understand how land use changes physical and chemical site characteristics and how biota respond to these changes. For this assessment, the basin was divided into four natural ecological categories: (1) Cascades ecoregion, (2) Eastern Cascades Slopes and Foothills ecoregion, (3) Columbia Basin ecoregion, and (4) large rivers. Each of these categories has a unique combination of climate and landscape features that produces a distinctive terrestrial vegetation assemblage. In the combined Cascades and Eastern Cascades site group, which had the fewest impaired sites, the metals index was the only physical and chemical index that indicated any impairment. The moderate levels of impairment noted in the invertebrate and algal communities were not, however, associated with metals, and may have been related to the effects of logging, although the intensity of logging was not directly quantified in this study. Sites in the Columbia Basin site group were all moderately or severely impaired with the exception of the two reference sites (Umtanum Creek and Satus Creek below Dry Creek), which showed no physical, chemical, or biological impairment. Three sites were heavily affected by agriculture (Granger Drain, Moxee Drain, and Spring Creek) and were listed as severely impaired by most of the physical, chemical, and biological condition indices. Agriculture was the primary cause of the impairment of biological communities in this site group. The primary physical and chemical indicators of agricultural effects were nutrients, pesticides, dissolved solids, and substrate embeddedness, which all tended to increase with agricultural intensity. The biological effects of agriculture were manifested by a decrease in the abundance and number of native species of fish and invertebrates, a shift in algal communities to species indicative of eutrophic conditions, and higher abundances. There was also an increase in the abundance and number of nonnative fish species due to the prevalence of fish that are largely tolerant of nutrient-rich conditions. Main stem (large river) sites downstream from the city of Yakima exhibited severe impairment of fish communities associated with high levels of pesticides in fish tissues and the presence of external anomalies on fish.

Washington↗