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USGS2020

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2017 and Spring 2018, Fourth Annual Report

To assess and track changes to the rocky subtidal communities surrounding San Nicolas Island, the U.S. Navy entered into an agreement with the U.S. Geological Survey (USGS) in 2014 to conduct an ecological monitoring program at several sites around the island. Four permanent sites—Nav Fac 100, West End, Dutch Harbor, and Daytona 100—were established. The sites were based on ones that had been monitored since 1980 by USGS and were combined or expanded for better comparability with monitoring programs conducted at the other California Channel Islands. At the sites, scientists from USGS and our cooperator, the University of California, Santa Cruz, measured bottom cover of algae and sessile invertebrate species in quadrats, counted and sized fish on swimming transects, and counted a suite of kelps and invertebrates on benthic band transects. Holdfast diameter and number of stipes of giant kelp ( Macrocystis pyrifera ) were recorded on these transects, and size data were collected for urchins, sea stars, and shelled mollusks. Bottom temperatures were recorded at hourly intervals by archival data loggers that were deployed at the sites. This report focuses primarily on data collected in fall 2017 and spring 2018 and makes comparisons with data collected in previous years, beginning in fall 2014. Nav Fac 100 is a site with a relatively low benthic profile, situated on the north side of San Nicolas Island. It was previously urchin dominated but underwent a dramatic decline in purple sea urchins in 2015 and 2016. Since then, macroalgae has become more prevalent as both annual brown algae, such as Dictyota, and perennials (for example, Cystoseira ) have become established. The invasive brown alga Sargassum horneri has also become established. West End, on the southwest side of the island, also lacks much bottom relief but has more crevice habitat associated with boulders. It remains dominated by kelps and red algae, but red algae have decreased recently. Dutch Harbor, on the south side, has many high relief rocky reefs and had the greatest fish and non-motile invertebrate densities. It remains the most stable of the sites. Daytona 100, on the southeast side, has moderate relief and has remained a patchwork of kelp and urchin dominated areas with moderate fish density. The main change at the sites during the last 4 years was the decline in urchin numbers at Nav Fac 100. There was storm-related mortality and subsequent recruitment in the M. pyrifera population at several of the sites in both 2016 and 2017. The winter of 2018, however, was relatively mild, with less destructive storm-related disturbance. The invasive brown alga S. horneri , first seen at San Nicolas Island at Nav Fac 100 in fall 2015, has become firmly established there during the last 2 sampling years. Finally, moderate increases were observed in purple urchin densities at all sites this spring. Long-term data are presented to illustrate trends and changes over the past three decades. Results indicate continued monitoring to evaluate ecosystem effects from perturbations owing to natural processes and anthropomorphic factors, including recovery of the sea otter population, changes in fisheries, invasive species and changing environmental conditions, could be valuable to inform managers’ decision-making.

California↗
USGS2012

February 2012 workshop jumpstarts the Mekong Fish Monitoring Network

The Mekong River in Southeast Asia travels through a basin rich in natural resources. The river originates on the northern slope of the world's tallest mountains, the Himalaya Range, and then drops elevation quickly through steep mountain gorges, tumbling out of China into Myanmar (Burma) and the Lao People's Democratic Republic (Lao PDR). The precipitous terrain of Lao PDR and Thailand generates interest in the river and its tributaries for hydropower development. The terrain, soils, water, and climate make it one of the world's most biologically rich regions. The Mekong's bounty is again on display in the Mekong River Delta, where rice production has successfully been increased to high levels making Vietnam second only to Thailand as the world's largest rice exporters. At least 800 fish species contribute to the natural resource bounty of the Mekong River and are the basis for one of the world's most productive fisheries that provide the primary protein source to more than 50 million people. Against this backdrop of rich natural resources, the U.S. Geological Survey (USGS) is working with the consulting firm FISHBIO, colleagues from the international Delta Research and Global Observation Network (DRAGON) Institute, and a broad contingent of Southeast Asian representatives and partners from abroad to increase knowledge of the Mekong River fisheries and to develop the capacity of permanent residents to investigate and understand these fisheries resources. With the Lower Mekong Basin (LMB) region facing the likelihood of significant environmental changes as a result of both human activities and global climate change, enhancing environmental understanding is critical. To encourage cooperation among the LMB scientists and managers in the study of the Mekong River's fisheries, FISHBIO and the USGS, with generous support from the U.S. State Department, hosted a workshop in Phnom Penh, Cambodia, in February 2012. Workshop participants were from Lao PDR, Thailand, Cambodia, and Vietnam. Representatives from the governments, universities, nongovernmental organizations, and the Mekong River Commission discussed current and potential methods and mechanisms of the Mekong Fish Monitoring Network. The goals of the workshop were to determine if the Network and associated databases were of interest and value to the LMB nations, to determine if future fisheries monitoring data would be comparable among the nations, and to establish methods and an organizational structure for collaborating on future monitoring and research. The participants in this international workshop agreed that the Network would be useful but would require additional funding to secure their full participation. The USGS and FISHBIO are collaboratively seeking additional funding to expand research participation and projects in all four LMB nations. If the Network can facilitate cooperation among many fisheries researchers in the LMB, the basin would become a model of cooperative international fishery studies and would increase the understanding of a river basin rich in natural resources.

Phnom Penh↗
USGS2013

Seventy-five years of science—The U.S. Geological Survey’s Western Fisheries Research Center

As of January 2010, 75 years have elapsed since Dr. Frederic Fish initiated the pioneering research program that would evolve into today’s Western Fisheries Research Center (WFRC). Fish began his research working alone in the basement of the recently opened Fisheries Biological Laboratory on Lake Union in Seattle, Washington. WFRC’s research began under the aegis of the U.S. Fish and Wildlife Service and ends its first 75 years as part of the U.S. Geological Survey with a staff of more than 150 biologists and support personnel and a heritage of fundamental research that has made important contributions to our understanding of the biology and ecology of the economically important fish and fish populations of the Nation. Although the current staff may rarely stop to think about it, WFRC’s antecedents extend many years into the past and are intimately involved with the history of fisheries conservation in the Western United States. Thus, WFRC Director Lyman Thorsteinson asked me to write the story of this laboratory “while there are still a few of you around who were here for some of the earlier years” to document the rich history and culture of WFRC by recognizing its many famous scientists and their achievements. This historyalso would help document WFRC’s research ‘footprint’ in the Western United States and its strategic directions. Center Director Thorsteinson concluded that WFRC’s heritage told by an emeritus scientist also would add a texture of legitimacy based on personal knowledge that will all-to-soon be lost to the WFRC and to the USGS. The WFRC story is important for the future as well as for historical reasons. It describes how we got to the place we are today by documenting the origin, original mission, and our evolving role in response to the constantly changing technical information requirements of new environmental legislation and organizational decision-making. The WFRC research program owes its existence to the policy requirements of Federal conservation legislation originating with the construction of Grand Coulee Dam in 1933. The research program was shaped by laws enacted in subsequent years such as the Federal Water Pollution Control Act (1972), National Environmental Policy Act (1973), Endangered Species Act (1974), and Northwest Power Planning Act (1980), to name only a few. The WFRC has not been constrained by direct management or regulatory responsibility for a particular fishery (such as providing sustainable catch limits data to a resource management structure). Thus, WFRC has been able to concentrate on scientific pursuits and information needs required by contemporary environmental legislation. Over the years, we have pioneered in several important areas of fisheries research including the diagnoses and control of diseases in economically important fish, effects of environmental alterations on the physiological quality and survival of Pacific salmon released from federal mitigation hatcheries, applications in biotelemetry, and the bioenergetics of predator-prey interactions in the Columbia River. The WFRC of today is a widely distributed organization in the Western United States. Knowledge of the historical connections and accomplishments of our predecessors is important beyond the sense of pride and unity it instills in the WFRC family of today. For example, a discerning reader will note the evolution of WFRC’s research from a single disciplinary focus (early era—hatchery disease problems), to multiple disciplines (middle to late era—species, populations, habitats; threatened and endangered species), to the present era (multidisciplinary and with increasing process focus). For the benefit of the current WFRC staff, more emphasis has been placed on the early years rather than on the present day because people are quite naturally more familiar with the recent past than with the research done during the first decades of WFRC’s existence. By every rational measure, the WFRC has evolved into a fisheries research organization well positioned to provide the biological information needed to support the continued conservation and management of our Nation’s living aquatic natural resources. The high standard of excellence that connects WFRC’s past to our present research program provides a firm foundation on which to base the work yet to be done. In another 75 years, WFRC will undoubtedly be a very different place than it is today, but its evolution will be forever rooted in the story of the research and of the people related here. More about the diverse fisheries research projects WFRC scientists are conducting today is available at WFRC’s website: http://wfrc.usgs.gov/.

Washington↗
USGS2016

Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California

We constructed a one-dimensional daily averaged water-temperature model to simulate Trinity River temperatures for 1980–2013. The purpose of this model is to assess effects of water-management actions on water temperature and to provide water temperature inputs for a salmon population dynamics model. Simulated meteorological data, observed streamflow data, and observed water temperatures were used as model inputs to simulate a continuous 34-year time series of historical daily mean water temperature at eight locations along 112.2 river miles from Lewiston Dam near Weaverville, California, downstream to the Klamath River confluence. To demonstrate the utility of the model to inform management actions, we simulated three management alternatives to assess the effects of bypass flow augmentation in a drought year, 1994, and compared those results to the simulated historical baseline, referred to as the “No Action” alternative scenario. Augmentation flows from the Lewiston Dam bypass consist of temperature-controlled releases capable of cooling downstream water temperatures in hot times of the year, which can reduce the probability of disease outbreaks in fish populations. Outputs from the Trinity River water-temperature model were then used as inputs to an existing water-temperature model of the Klamath River to evaluate the effect of augmentation flow releases on water temperatures in the lower Klamath River. We structured the Trinity River water-temperature model in River Basin Model-10 (RBM10), which uses a simple equilibrium flow model, assuming discharge in each river segment on each day is transmitted downstream instantaneously. The model uses a heat-budget formulation to quantify heat flux at the air-water interface. Inputs for the heat budget are calculated from daily mean meteorological data, including net shortwave solar radiation, net longwave atmospheric radiation, air temperature, wind speed, vapor pressure, and a psychrometric constant needed to calculate the Bowen ratio. The modeling domain was divided into eight reaches ranging in length from 8.8 to 20.6 miles, which were calibrated and validated separately with observed water temperature data collected irregularly from 1980 to 2013. Root mean square errors of observed and simulated water temperatures for the eight reaches ranged from 0.25 to 1.12 degrees Celsius (°C). Mean absolute errors ranged from 0.18 to 0.89 °C. For model validation, a k -fold cross-validation technique was used. Validation root mean square error and mean absolute error for the eight reaches ranged from 0.24 to 1.11 °C and from 0.18 to 0.89 °C, respectively. Augmentation scenarios were based on historical hydrological and meteorological data, combined with prescribed flow and temperature releases from Lewiston Dam provided by the Bureau of Reclamation. Water releases were scheduled to achieve targeted flows of 2,500, 2,800, and 3,200 cubic feet per second in the lower Klamath River from mid-August through late September, coinciding with the upstream migration of adult fall-run Chinook salmon ( Oncorhynchus tshawytscha ). Water temperatures simulated at river mile 5.7 on the Klamath River showed a 5 °C decrease from the No Action historical baseline, which was near or greater than 23 °C when augmentation began in mid-August. Thereafter, an approximate 1 °C difference among augmentation scenarios emerged, with the decrease in water temperature commensurate to the level of augmentation. All augmentation scenarios simulated water temperatures equal to or less than 21 °C from mid-August through late September. Water temperatures equal to or greater than 23 °C are of particular interest because of a thermal threshold known to inhibit upstream migration of salmon. When temperatures exceed this approximate 23 °C threshold, Chinook salmon are known to congregate in high densities in thermal refugias and show extended residence times, which can potentially trigger epizootic outbreaks such as of Ichthyophthirius multifiliis (“Ich”) and Flavobacterium columnare (“Columnaris”) that were the causative factors of the Klamath River fish kill in 2002. A model with the ability to simulate water temperatures in response to management actions at the basin scale is a valuable asset for water managers who must make decisions about how best to use limited water resources, which directly affect the state of fisheries in the Klamath Basin.

California↗
USGS2000

Hydrology, water quality, and nutrient loads to Lake Catherine and Channel Lake, near Antioch, Lake County, Illinois

From April 21, 1998, through April 30, 1999, the U.S. Geological Survey, in cooperation with the Fox Waterway Agency, conducted an investigation designed to characterize the hydrology, water quality, hydrologic budget, sediment budget, and nutrient budget of Lake Catherine and Channel Lake, Lake County, Illinois. These lakes are the northernmost lakes of the Fox Chain of Lakes. Lake Catherine and Channel Lake are divided into two basins by a submerged ridge but are continuous at the surface. The lakes are marginally to moderately eutrophic. Lake Catherine and Channel Lake have a combined volume of 7,098 acre-feet at a stage of about 736.5 feet above sea level. Lake Catherine and Channel Lake are subject to thermal stratification. Although most of the water in the lakes is well oxidized, nearly anoxic conditions were present at the bottom of Lake Catherine and Channel Lake during part of the summer in 1998. Water enters Lake Catherine and Channel Lake as inflow from surface water in the watershed (61.9 percent), inflow through the State Highway 173 bridge openings (20.7 percent), direct precipitation (8.2 percent), inflow from storm drains (7.2 percent), and inflow of ground water (2.0 percent). Water exits Lake Catherine and Channel Lake as outflow through the State Highway 173 bridge openings (87.8 percent), evaporation (7.2 percent), and as outflow to ground water (5.0 percent). About 5,200 pounds of phosphorus and 107,200 pounds of nitrogen compounds were added to the lakes during the period of investigation. Phosphorus compounds were derived from primarily internal regeneration (40.2 percent), inflow from surface water in the watershed (30.9 percent), inflow from storm drains (12.5 percent), and inflow through the State Highway 173 bridge openings (9.8 percent). Inflowing ground water, waterfowl excrement, precipitation, and atmospheric deposition of particulate matter account for 6.6 percent of the phosphorus load. Nitrogen was derived from inflow of surface water from within the watershed (52.9 percent), internal regeneration (19.5 percent), inflow through the State Highway 173 bridge openings (10.7 percent), precipitation (7 percent), and inflow from storm drains (6.5 percent). Inflowing ground water, waterfowl excrement, and atmospheric deposition of particulate matter account for about 3.4 percent of the nitrogen load. About 2,220 pounds of phosphorus and 52,300 pounds of nitrogen compounds are removed from the lakes, primarily through the openings at State Highway 173. Nitrate, nitrite, ammonia, and dissolved phosphorus are utilized by algae and aquatic macrophytes. Uptake of these nutrients by aquatic macrophytes and algae temporarily removes them from the water column but not from the lake basin. Because the amount of nutrients entering the lake greatly exceeds the amount leaving, the nutrients are concentrated in the sediments at the lake bottom, where the nutrients can be used by the rooted aquatic macrophytes (rooted aquatic plant large enough to be visible to the unaided eye) and released to the water column during reducing conditions. The buildup of nitrogen and phosphorus compounds in the lakes has the potential over time to stimulate algal and plant growth to nuisance levels that have the potential to affect the fishery and detract from the aesthetic quality of these lakes.

Water-Resources Investigations Report↗
USGS2000

Preliminary hydraulic analysis and implications for restoration of Noyes Slough, Fairbanks, Alaska

The present-day channels of the Chena River and Noyes Slough in downtown Fairbanks, Alaska, were formed as sloughs of the Tanana River, and part of the flow of the Tanana River occupied these waterways. Flow in these channels was reduced after the completion of Moose Creek Dike in 1945, and flow in the Chena River was affected by regulation from the Chena River Lakes Flood Control Project, which was completed in 1980. In 1981, flow in the Chena River was regulated for the first time by Moose Creek Dam, located about 20 miles upstream from Fairbanks. Constructed as part of the Chena River Lakes Flood Control Project, the dam was designed to reduce maximum flows to 12,000 cubic feet per second in downtown Fairbanks. Cross-section measurements made near the entrance to Noyes Slough show that the channel bed of the Chena River has been downcutting, thereby reducing the magnitude and duration of flow in the slough. Consequently the slough slowly is drying up. Residents of the community wish to restore flow in Noyes Slough to create a clean, flowing waterway during normal summer flows. The desire is to enhance the slough as a fishery and habitat for other wildlife and for recreational boating.

Alaska↗
USGS2003

Pop-up archival transmitting (PAT) tags: A method to investigate the migration and behavior of Pacific halibut ( Hippoglossus stenolepis ) in the Gulf of Alaska

Pop-up archival transmitting (PAT) tags provide a fisheries-independent method of collecting environmental preference data (depth and ambient water temperature) and migration distance. In this study, we evaluate the use of pop-up archival transmitting tags as a method to investigate demersal fish. We report the results from eight pop-up archival transmitting tagged Pacific halibut Hippoglossus stenolepis (from 107 to 165 cm FL) that were released in and around Resurrection Bay, Alaska. Commercial fishermen recovered three tags, while five tags transmitted data to Argos satellites. Horizontal migration was not consistent among fish as four Pacific halibut remained in the vicinity of release while the other four traveled up to 358 km from the release site. Vertical movement was not consistent among fish or over time; however, they spent most of their time at depths of 150 to 350 m. The minimum and maximum depths reached by any of the Pacific halibut were 2 m and 502 m, respectively. The fish preferred water temperatures of approximately 6°C, but experienced temperatures between 4.3 and 12.2°C. Light attenuation with depth prevented geolocation software and light sensing hardware from accurately estimating geoposition for the majority of days. The methods, adapted from investigations on large pelagic fish, proved to be effective for studying Pacific halibut in the northern Gulf of Alaska. PAT tags allowed us to obtain high accuracy locations of the fish at the end of the tag deployments as well as preliminary data to identify approximate seasonal locations and to characterize their depth and temperature characteristics. By using PAT tags, we will be able to ensure tag returns during the winter season (which is closed to fishing) and gain valuable biological information even if fish migrate large distances or to unexpected locations.

Alaska Fishery Research Bulletin↗
USGS2010

Effects of High-Flow Experiments from Glen Canyon Dam on Abundance, Growth, and Survival Rates of Early Life Stages of Rainbow Trout in the Lees Ferry Reach of the Colorado River

High-flow experiments (HFEs) from Glen Canyon Dam are primarily intended to conserve fine sediment and improve habitat conditions for native fish in the Colorado River as it flows through Grand Canyon National Park, Arizona. These experimental flows also have the potential to affect the rainbow trout (Oncorhynchus mykiss) population in the Lees Ferry tailwater reach immediately below the dam, which supports a highly valued recreational fishery and likely influences the abundance of rainbow trout in Grand Canyon. Understanding how flow regimes affect the survival and growth of juvenile rainbow trout is critical to interpreting trends in adult abundance. This study reports on the effects of HFEs in 2004 and 2008 on early life stages of rainbow trout in the Lees Ferry reach on the basis of monthly sampling of redds (egg nests) and the abundance of the age-0 trout (fertilization to about 1 to 2 months from emergence) and their growth during a 7-year period between 2003 and 2009. Multiple lines of evidence indicate that the March 2008 HFE resulted in a large increase in early survival rates of age-0 trout because of an improvement in habitat conditions. A stock-recruitment analysis demonstrated that age-0 abundance in July 2008 was more than fourfold higher than expected, given the number of viable eggs that produced these fish. A hatch-date analysis showed that early survival rates were much higher for cohorts that hatched about 1 month after the 2008 HFE (about April 15, 2008) relative to those fish that hatched before this date. These cohorts, fertilized after the 2008 HFE, would have emerged into a benthic invertebrate community that had recovered, and was possibly enhanced by, the HFE. Interannual differences in growth of age-0 trout, determined on the basis of otolith microstructure, support this hypothesis. Growth rates in the summer and fall of 2008 (0.44 mm/day) were virtually the same as in 2006 (0.46 mm/day), the highest recorded during 6 years, even though abundance was eightfold greater in 2008. We speculate that the 60-hour-long 2008 HFE (with peak magnitude about twice that of the annual peak flow during the previous 4 years) increased interstitial spaces in the gravel bed substrate and food availability or quality, leading to higher early survival of recently emerged trout and better growth of these fish through summer and fall. Abundance in 2009 was more than twofold higher than expected, given the estimated number of viable eggs deposited in that year, perhaps indicating that the effect of the 2008 HFE on early life stages was somewhat persistent. In a 3-week interval that spanned the November 2004 HFE, abundance of age-0 trout that were approximately 7 months old from hatch experienced about a threefold decline, compared to the approximately twofold decrease observed between November and December 2008. Abundance of age-0 trout that were approximately 10 months old from hatch was very similar across sampling trips that spanned the March 2008 HFE. It is uncertain whether the decline in abundance after the November 2004 HFE was the result of higher flow-induced mortality or higher flow-induced downstream dispersal. A focused monitoring effort in Marble Canyon (the reach immediately downstream of the Lees Ferry tailwater) before and after future HFEs is recommended to resolve this uncertainty. Relatively detailed monitoring of early life stages-such as the program described in this study-is essential to establish linkages between Glen Canyon Dam operations, or possibly other factors, and trends in the abundance of important nonnative and native fish populations living downstream within Grand Canyon National Park.

Open-File Report↗
USGS2012

Perils of correlating CUSUM-transformed variables to infer ecological relationships (Breton et al. 2006; Glibert 2010)

We comment on a nonstandard statistical treatment of time-series data first published by Breton et al. (2006) in Limnology and Oceanography and, more recently, used by Glibert (2010) in Reviews in Fisheries Science. In both papers, the authors make strong inferences about the underlying causes of population variability based on correlations between cumulative sum (CUSUM) transformations of organism abundances and environmental variables. Breton et al. (2006) reported correlations between CUSUM-transformed values of diatom biomass in Belgian coastal waters and the North Atlantic Oscillation, and between meteorological and hydrological variables. Each correlation of CUSUM-transformed variables was judged to be statistically significant. On the basis of these correlations, Breton et al. (2006) developed "the first evidence of synergy between climate and human-induced river-based nitrate inputs with respect to their effects on the magnitude of spring Phaeocystis colony blooms and their dominance over diatoms."

Limnology and Oceanography↗
USGS2009

Influence of a weak field of pulsed DC electricity on the behavior and incidence of injury in adult Steelhead and Pacific Lamprey

Predation by pinnipeds, such as California sea lions Zalophus californianus, Pacific harbor seals Phoca vitulina, and Stellar sea lions Eumetopias jubatus on adult Pacific salmon Oncorhynchus spp in the lower Columbia River has become a serious concern for fishery managers trying to conserve and restore runs of threatened and endangered fish. As a result, Smith-Root, Incorporated (SRI; Vancouver, Washington), manufacturers of electrofishing and closely-related equipment, proposed a project to evaluate the potential of an electrical barrier to deter marine mammals and reduce the amount of predation on adult salmonids (SRI 2007). The objectives of their work were to develop, deploy, and evaluate a passive, integrated sonar and electric barrier that would selectively inhibit the upstream movements of marine mammals and reduce predation, but would not injure pinnipeds or impact anadromous fish migrations. However, before such a device could be deployed in the field, concerns by regional fishery managers about the potential effects of such a device on the migratory behavior of Pacific salmon, steelhead O. mykiss, Pacific lampreys Entoshpenus tridentata, and white sturgeon Acipenser transmontanus, needed to be addressed. In this report, we describe the results of laboratory research designed to evaluate the effects of prototype electric barriers on adult steelhead and Pacific lampreys.

Report↗
USGS2022

Patterns of live baitfish use and release among recreational anglers in a regulated landscape

The release of live baitfish by anglers has been identified as a high-risk pathway for the introduction of aquatic invasive species due to the potential for invasive fish, invertebrates, or pathogens to be released simultaneously with the baitfish. Consequently, the release of live baitfish is illegal in many jurisdictions, but little is known about compliance rates or angler motivations for illegal release. To assess the incidence of live baitfish release in Minnesota, USA, a state with significant live baitfish use and substantial recreational fisheries, we administered a mail survey to a random sample of 4,000 anglers who held a 2018-2019 annual fishing license and received 671 completed responses. To mitigate potential recall bias, we also administered 345 intercept surveys at waterbody access sites around the state to ask anglers about their current day’s behaviors. A total of 481 (72%) of the mail survey respondents reported that they used live baitfish and of those, 99 (20%) reported that they release their leftover live baitfish into the water at least some of the time. Of the anglers surveyed at waterbody access sites, 59 (19%) were using live baitfish on the day they were surveyed and of those, 11 (18%) released their leftover baitfish into the water. The reasons anglers provided for releasing their baitfish included convenience and their mistaken understanding that released baitfish benefit the recipient ecosystem. The potential for invasive species introductions through baitfish releases is high given the reported rate of baitfish releases. However, there is also significant opportunity for management interventions aimed at changing perceptions and providing convenient disposal alternatives to illegal release to reduce the risk presented by this pathway.

Minnesota↗
USGS2012

Groundwater quality and simulation of sources of water to wells in the Marsh Creek valley at the U.S. Geological Survey Northern Appalachian Research Laboratory, Tioga County, Pennsylvania

This report provides a November 2010 snapshot of groundwater quality and an analysis of the sources of water to wells at the U.S. Geological Survey (USGS) Northern Appalachian Research Laboratory (NARL) near Wellsboro, Pennsylvania. The laboratory, which conducts fisheries research, currently (2011) withdraws 1,000 gallons per minute of high-quality groundwater from three wells completed in the glacial sand and gravel aquifer beneath the Marsh Creek valley; a fourth well that taps the same aquifer provides the potable supply for the facility. The study was conducted to document the source areas and quality of the water supply for this Department of Interior facility, which is surrounded by the ongoing development of natural gas from the Marcellus Shale. Groundwater samples were collected from the four wells used by the NARL and from two nearby domestic-supply wells. The domestic-supply wells withdraw groundwater from bedrock of the Catskill Formation. Samples were analyzed for major ions, nutrients, trace metals, radiochemicals, dissolved gases, and stable isotopes of oxygen and hydrogen in water and carbon in dissolved carbonate to document groundwater quality. Organic constituents (other than hydrocarbon gases) associated with hydraulic fracturing and other human activities were not analyzed as part of this assessment. Results show low concentrations of all constituents. Only radon, which ranged from 980 to 1,310 picocuries per liter, was somewhat elevated. These findings are consistent with the pristine nature of the aquifer in the Marsh Creek valley, which is the reason the laboratory was sited at this location. The sources of water and areas contributing recharge to wells were identified by the use of a previously documented MODFLOW groundwater-flow model for the following conditions: (1) withdrawals of 1,000 to 3,000 gallons per minute from the NARL wells, (2) average or dry hydrologic conditions, and (3) withdrawals of 1,000 gallons per minute from a new well 3,500 feet to the southwest that was drilled to provide water for Marcellus gas-well operations. Results of simulations indicate that during average hydrologic conditions, infiltration from Straight Run, a tributary to Marsh Creek, provides nearly all the water to the NARL wells. During dry conditions, the areas contributing recharge expand such that Asaph Run contributes about half of the water to the NARL wells when withdrawals are 1,000 or 2,000 gallons per minute. The addition of a simulated withdrawal of 1,000 gallons per minute from the nearby new well does not substantially affect the sources of water captured by the NARL wells. These results are subject to some limitations. The water-quality samples represent a snapshot of groundwater chemistry for only one hydrologic condition; the concentrations of some constituents may change temporally. In addition, samples were collected and analyzed for hydrocarbon gases, but not organic constituents associated with hydraulic fracturing; additional sampling for these constituents would provide a more complete water-quality baseline. The sources contributing water to the NARL wells and the new well were simulated by use of a simplified one-layer model of the glacial sand and gravel aquifer for steady-state conditions that in reality are never achieved. Steady-state simulations of dry hydrologic conditions show that it is possible for the NARL wells to capture water from Asaph Run; however, maps of simulated groundwater time-of-travel indicate that a dry period of unusually long duration would be required. A better analysis could be done by recalibrating the groundwater-flow model with a finite-difference grid having multiple layers, cells smaller than the 200-foot by 200-foot cells used in this study, and transient stress periods.

Pennsylvania↗
USGS2007

Otolith research for Puget Sound

Otoliths are hard structures located in the brain cavity of fish. These structures are formed by a buildup of calcium carbonate within a gelatinous matrix that produces light and dark bands similar to the growth rings in trees. The width of the bands corresponds to environmental factors such as temperature and food availability. As juvenile salmon encounter different environments in their migration to sea, they produce growth increments of varying widths and visible 'checks' corresponding to times of stress or change. The resulting pattern of band variations and check marks leave a record of fish growth and residence time in each habitat type. This information helps Puget Sound restoration by determining the importance of different habitats for the optimal health and management of different salmon populations. The USGS Western Fisheries Research Center (WFRC) provides otolith research findings directly to resource managers who put this information to work.

Washington↗
USGS1981

Submarine topography and physiography of lower Cook Inlet, Alaska

The submarine topography of lower Cook Inlet, Alaska, is complex because the bathymetric aspects and water depths change rapidly over short distances. The folded upper Tertiary subbottom was eroded during the first of five major Quaternary glacial advances over the inlet, and later fluvial, fluvioglacial, glacial, and marine erosional and depositional processes shaped the bottom to its present configuration. Most of lower Cook Inlet has a relative smooth topography showing small local highs and lows, and slopes with gradients generally ranging from less than a degree to locally about 5°. Around the southwestern Kenai Peninsula and the Barren and Kodiak Islands, strong faulting with vertical movement has added to the complexity of bottom topography. Less complex, nonfaulted areas occur near Kalgin Island and south Kachemak Bay and around Augustine Island. To facilitate description of lower Cook Inlet the estuarine body is divided into three large regions, northern and central, southern, and eastern; and these regions are divided into smaller physiographic areas on the basis of submarine topographic characteristics and 20-m depth zonations. Each area is named by combining the geographic name of a nearby place or feature on land with a common term for a marine physiographic feature -- trough, platform, ramp, slope, plateau. Local highs and deeps having lees than 5-m relief, which can be important to fisheries and specific research or economic studies, are not named, mentioned in text, or shown on the figures.

Alaska↗
USGS1941

Attwater's prairie-chicken-its life history and management

Attwater's prairie chicken, a characteristic bird of the Texas coastal prairie, is closely related to the now extinct heath-hen of northeastern North America. Once abundant in an area extending from the coastal tall-grass prairies of southwestern Louisiana and Texas west and south to near Port Isabel, it has decreased in numbers as man has exploited its habitat, until now it is threatened with the same fate as that of the heath-hen. Important factors limiting the numbers of the bird include excessive or persistent rainfall during the nesting season, heavy grazing, excessive pasture burning, agricultural operations, and overshooting. Management will usually involve protection from excessive killing, improvement of food and cover, and control of predators and of the kill by hunters. Responsibility for this rests with the landowner. Optimum prairie chicken range apparently consists of well-drained grassland, with some weeds or shrubs, the cover varying in density from light to heavy; and with surface water available in summer; diversification within the grassland type is essential. In the absence of ample refuges for the species, probably all other favorable factors together will fail to save Attwater's prairie chicken from extinction. This number continues the series of the North American Fauna issued by the Bureau of Biological Survey, of the United States Department of Agriculture, prior to its transfer and consolidation with the Bureau of Fisheries on June 30, 1940, to form the Fish and Wildlife Service, in the Department of the Interior.

North American Fauna↗
USGS2003

Conditions for growth and survival of bull trout in Beulah Reservoir, Oregon. Annual report 2002

The Bureau of Reclamation (BOR) constructed Agency Valley Dam on the North Fork of the Malheur River in 1934-35, creating Beulah Reservoir. The project is operated and maintained by the Vale Irrigation District for irrigation and downstream flood control. There is currently no formal agreement for a minimum pool level at Beulah Reservoir, but project operators of Agency Valley Dam and BOR are considering management alternatives. Although the project is not operated for fish and wildlife values, the reservoir supports a rainbow trout Oncorhynchus mykiss fishery and also seasonally harbors an adfluvial population of bull trout Salvelinus confluentus (Oregon Department of Fish and Wildlife [ODFW], unpublished data). Bull trout were listed by the USFWS as a threatened species throughout the Columbia and Klamath river basins in 1998, and Oregon has listed the North Fork Malheur River population “Of Special Concern”.

Oregon↗
USGS1989

Acid rain publications by the U.S. Fish and Wildlife Service, 1979-1989

Pollution of aquatic and terrestrial ecosystems has been a concern to society since the burning of fossil fuels began in the industrial revolution. In the past decade or so, this concern has been heightened by evidence that chemical transformation in the atmosphere of combustion by-products and subsequent long-range transport can cause environmental damage in remote areas. The extent of this damage and the rates of ecological recovery were largely unknown. "Acid rain" became the environmental issue of the 1980's. To address the increasing concerns of the public, in 1980 the Federal government initiated a 10-year interagency research program to develop information that could be used by the President and the Congress in making decisions for emission controls. The U.S. Fish and Wildlife Service has been an active participant in acid precipitation research. The Service provided support to a number of scientific conferences and forums, including the Action Seminar on Acid Precipitation held in Toronto, Canada, in 1979, an international symposium on Acidic Precipitation and Fishery Impacts in Northeastern North America in 1981, and a symposium on Acidic Precipitation and Atmospheric Deposition: A Western Perspective in 1982. These meetings as well as the growing involvement with the government's National Acidic Precipitation Assessment Program placed the Service in the lead in research on the biological effects of acidic deposition. Research projects have encompassed water chemistry, aquatic invertebrates, amphibians, fish, and waterfowl. Water quality surveys have been conducted to help determine the extent of acid precipitation effects in the northeast, Middle Atlantic, and Rocky Mountain regions. In addition to lake and stream studies, research in wetland and some terrestrial habitats has also been conducted. Specific projects have addressed important sport species such as brook trout (Salvelinus fontinalis), Atlantic salmon (Salmo salar), and striped bass (Morone saxatilis). Trace metal accumulation in fish has been investigated and a symposium sponsored on related work. U.S> Fish and Wildlife Service scientists serve as advisors and participants in research being conducted by industry, nonprofit groups, State and other Federal agencies. Researcher have worked closely with colleagues in Canada, England, Norway, Scotland, the Soviet Union, and Sweden to gain additional understanding of the problem. In 1982, the Service implemented a mitigation research program to provide resource managers with information to help them protect sensitive ecosystems, and rehabilitation methods for resources already affected by acidification. An international workshop was convened to outline the research needs. Several conferences were organized to develop appropriate field and laboratory procedures. Scientists with the mitigation research program are evaluating the ecological effects of liming (addition of base material) surface waters and surrounding watershed to provide buffering against acidic inputs. Through long-term cooperative project with States and other organizations, investigations are studying possible abatement methods for regions most affected by acidic deposition. To date, more than 200 reports the describe these studies have been published. These products include conference proceedings, journal articles, and in-house scientific publications. An education poster describing the effects of acid rain on aquatic ecosystems was developed and distributed to individuals, conservations and State organizations, and the public education system. This annotated bibliography lists current publications by Service authors, cooperators, or contractors on acid rain and related quality. Entire are arranged alphabetically by author surname. For further information about the research program, contact the U.S. Fish and Wildlife Service, Acid Precipitation Section, National Fishery Research Center -- Leetown, Box 700, Kearneysville, WV 25430.

Biological Report↗
USGS2023

Estimates of adult Lake Trout mortality from coded wire tags in a population with developing natural reproduction in southern Lake Michigan

Objective Overfishing and Sea Lamprey Petromyzon marinus predation led to extirpation of Lake Trout Salvelinus namaycush from Lake Michigan in the 1950s. Large populations of hatchery‐reared fish were developed by the 1970s, but natural reproduction was limited until the early 2000s when it began to increase in the southern main basin. Hypothesizing that the relatively low mortality of spawning‐aged fish contributed to this reproductive success, we estimated the total annual mortality rate for this population. Methods We used catch curves to estimate the total instantaneous mortality rate Z using coded wire tags, which provided definitive ages. We made separate estimates from fish collected in three on‐going surveys: a spring gill‐net survey, a fall gill‐net spawning survey, and a sport fishery survey. Result Our estimates of Z ± SE were 0.297 ± 0.019, 0.239 ± 0.009, and 0.205 ± 0.007 for the spring, spawning, and sport fishery surveys, respectively. We suggest that the mean Z ± SE of all survey estimates of 0.247 ± 0.027 would be a reasonable estimate for this population, which equates to a total annual mortality of 22 ± 3%. This estimate is in the low range of rates reported for the species and is in the same range as other populations in the Great Lakes with well‐established natural reproduction. Conclusion We concluded that these low total mortality rates contributed to the reproductive success in southern Lake Michigan through increasing spawning stock density and age structure and that previous estimates of another important population parameter, the instantaneous natural mortality rate M , were too high. Estimates of M ranged from 0.210 to 0.240 and were based on the Pauly equation, a growth‐ and temperature‐based estimator. We suggest maximum‐age‐based estimators of M are more appropriate for Lake Trout. Several alternative maximum‐age‐based estimators produced estimates for M of 0.132–0.058, all of which are more compatible with our estimate of Z .

Lake Michigan↗