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A synergistic future for AI and ecology

Research in both ecology and AI strives for predictive understanding of complex systems, where nonlinearities arise from multidimensional interactions and feedbacks across multiple scales. After a century of independent, asynchronous advances in computational and ecological research, we foresee a critical need for intentional synergy to meet current societal challenges against the backdrop of global change. These challenges include understanding the unpredictability of systems-level phenomena and resilience dynamics on a rapidly changing planet. Here, we spotlight both the promise and the urgency of a convergence research paradigm between ecology and AI. Ecological systems are a challenge to fully and holistically model, even using the most prominent AI technique today: deep neural networks. Moreover, ecological systems have emergent and resilient behaviors that may inspire new, robust AI architectures and methodologies. We share examples of how challenges in ecological systems modeling would benefit from advances in AI techniques that are themselves inspired by the systems they seek to model. Both fields have inspired each other, albeit indirectly, in an evolution toward this convergence. We emphasize the need for more purposeful synergy to accelerate the understanding of ecological resilience whilst building the resilience currently lacking in modern AI systems, which have been shown to fail at times because of poor generalization in different contexts. Persistent epistemic barriers would benefit from attention in both disciplines. The implications of a successful convergence go beyond advancing ecological disciplines or achieving an artificial general intelligence—they are critical for both persisting and thriving in an uncertain future.

Proceedings of the National Academy of Sciences

A transdisciplinary approach to growing an applied science of cultural evolution for a sustainable future

Addressing sustainability challenges requires an integrative approach that bridges scientific research with practical application. The field of cultural evolution (CE) offers a perspective that may guide transitions and cultural transformations for a sustainable future. However, there have been few efforts to apply this field to sustainability challenges. This study explores how CE can inform sustainability practices through mechanisms of social learning, processes of cultural adaptation and conditions that promote cooperative governance. Through a two-phase research design—comprising online discussions with professionals from six domains, and an international workshop—we examined the perceived benefits, challenges and opportunities for applying CE in real-world contexts. Our findings indicate that professionals recognize CE’s potential to enhance knowledge dissemination, foster adaptation to social–ecological changes, improve governance structures and generate cooperation. However, barriers such as complex terminology, unfamiliarity with CE, the lack of clear, context-specific evidence of added value and competition with existing frameworks hinder its application. To overcome these challenges, we propose simplifying CE concepts, demonstrating its unique contributions, and continuing to foster co-production with practitioners to refine its applicability. This study is an initial step in building an applied science of CE that can support sustainability transformations across diverse domains.

Philosophical Transactions of the Royal Society B

Accuracy, accessibility, and institutional capacity shape the utility of habitat models for managing and conserving rare plants on western public lands

Public lands are often managed for multiple uses ranging from energy development to rare plant conservation. Habitat models can help land managers assess and mitigate potential effects of projects on rare plants, but it is unclear how models are currently being used. Our goal was to better understand how staff in the Bureau of Land Management currently use habitat models to inform their decisions, and perceived challenges and benefits associated with that use. We first examined litigation documents to determine whether the agency has been challenged on its use of data for rare plants and found no relevant legal challenges. Second, we analyzed model use in National Environmental Policy Act (NEPA) documents and found no clear citations of habitat models. Finally, we conducted interviews with agency staff who analyze potential effects of proposed actions on rare plants in NEPA documents. The primary challenges interviewees faced in using models related to data organization and access, model quality and accuracy, and institutional capacity. Interviewees believed models could be used more to inform decisions and actions to conserve rare plants and rare plant habitat on public lands and recommended improving staff access to models, creating models for additional species, and addressing staffing limitations.

Arizona, California, Colorado, New Mexico, Utah, W

In-Flight performance of MESSENGER's Mercury dual imaging system

The Mercury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) spacecraft, launched in August 2004 and planned for insertion into orbit around Mercury in 2011, has already completed two flybys of the innermost planet. The Mercury Dual Imaging System (MDIS) acquired nearly 2500 images from the first two flybys and viewed portions of Mercury's surface not viewed by Mariner 10 in 1974-1975. Mercury's proximity to the Sun and its slow rotation present challenges to the thermal design for a camera on an orbital mission around Mercury. In addition, strict limitations on spacecraft pointing and the highly elliptical orbit create challenges in attaining coverage at desired geometries and relatively uniform spatial resolution. The instrument designed to meet these challenges consists of dual imagers, a monochrome narrow-angle camera (NAC) with a 1.5?? field of view (FOV) and a multispectral wide-angle camera (WAC) with a 10.5?? FOV, co-aligned on a pivoting platform. The focal-plane electronics of each camera are identical and use a 1024??1024 charge-coupled device detector. The cameras are passively cooled but use diode heat pipes and phase-change-material thermal reservoirs to maintain the thermal configuration during the hot portions of the orbit. Here we present an overview of the instrument design and how the design meets its technical challenges. We also review results from the first two flybys, discuss the quality of MDIS data from the initial periods of data acquisition and how that compares with requirements, and summarize how in-flight tests are being used to improve the quality of the instrument calibration. ?? 2009 SPIE.

Conference Paper

Improving how science informs policy within the Ecosystem Approach

Science is fundamental to sound policies, particularly when it comes to implementing an Ecosystem Approach. Science can and should inform nearly all facets of an Ecosystem Approach, yet challenges remain to realizing this goal. To help identify and better understand these challenges we used a qualitative comparative case study approach to identify and characterize the challenges and successes of implementing a science-driven Ecosystem Approach in the Laurentian Great Lakes. These case studies include delisting of Areas of Concern, improving coastal resilience, and addressing declining offshore lake productivity. These case studies were selected because they provide a set of very different, yet complementary, cases for assessing implementation, as well as the factors influencing the science-policy exchange. Through this comparative study, we identified a diverse set of challenges and successes, that were both systemic and case specific. Emerging from this comparative assessment were principles and enabling conditions (e.g. scale, governance, shared goals) we believe are critical to consider when establishing or improving a science-driven Ecosystem Approach.

Aquatic Ecosystem Health & Management

Furunculosis in brook trout: Infection by contact exposure

In juvenile brook trout (Salvelinus fontinalis) challenged by applying about 10 9 virulent Aeromonas salmonicida cells to an abraded area along the lateral line, or held in aquarium water containing about 10 5 cells per milliliter, mortalities were 50 and 60%, respectively, within 7 days after exposure. Neither feeding the bacterium to the fish nor applying it directly to the gills caused systemic bacterial infection. Two consistent experimental challenges were developed for inducing furunculosis in juvenile brook trout: (1) 15‐min contact (bath) exposures of trout to about 10 6 A. salmonicida cells per milliliter of spring water, and (2) 60‐s dip exposures of the fish to 10 9 A. salmonicida cells per milliliter. These challenge procedures produced 70‐100% and 74‐88% mortality, respectively, within 14 days after exposure. Results obtained with a strain of brook trout from Owhi Lake, Washington, by the dip exposure method were affected by neither the age of the fish (up to 1 year) nor the source of the population. The challenge was also effective for Atlantic salmon (Salmo salar) but not for rainbow trout (S. gairdneri).

Progressive Fish-Culturist

Immersion and injection vaccination of salmonids against furunculosis with an avirulent strain of Aeromonas salmonicida

Replicate groups of brook trout (Salvelinus fontinalis) immunized by intraperitoneal injection of graded dilutions of an avirulent strain of Aeromonas salmonicida were protected from a virulent challenge. Mean mortality after challenge was 88% in control trout, 66% in trout immunized with 3 × 10 6 or 3 × 10 5 cells, and 39% in trout immunized with 3 × 10 4 to 3 × 10¹ cells. In brook trout challenged after immersion for 60 s in a culture containing 2.3 × 10 9 avirulent cells of A. salmonicida per milliliter, mortality was 44%, compared with 94% in controls. In Atlantic salmon (Salmo salar), similarly vaccinated by immersion, mortality was 12.5% after challenge compared with 87.5% in controls. In additional studies, mean mortality of Atlantic salmon vaccinated by immersion was 14%, whereas that of control salmon was 92%.

Progressive Fish-Culturist

Reversion to virulence and efficacy of an attenuated canarypox vaccine in Hawai'i 'Amakihi ( Hemignathus Virens )

Vaccines may be effective tools for protecting small populations of highly susceptible endangered, captive-reared, or translocated Hawaiian honeycreepers from introduced Avipoxvirus , but their efficacy has not been evaluated. An attenuated Canarypox vaccine that is genetically similar to one of two passerine Avipoxvirus isolates from Hawai‘i and distinct from Fowlpox was tested to evaluate whether Hawai‘i ‘Amakihi ( Hemignathus virens ) can be protected from wild isolates of Avipoxvirus from the Hawaiian Islands. Thirty-one (31) Hawai‘i ‘Amakihi were collected from high-elevation habitats on Mauna Kea Volcano, where pox transmission is rare, and randomly divided into two groups. One group was vaccinated with Poximune C®, whereas the other group received a sham vaccination with sterile water. Four of 15 (27%) vaccinated birds developed life-threatening disseminated lesions or lesions of unusually long duration, whereas one bird never developed a vaccine-associated lesion or “take.” After vaccine lesions healed, vaccinated birds were randomly divided into three groups of five and challenged with either a wild isolate of Fowlpox (FP) from Hawai‘i, a Hawai‘i ‘Amakihi isolate of a Canarypox-like virus (PV1), or a Hawai‘i ‘Amakihi isolate of a related, but distinct, passerine Avipoxvirus (PV2). Similarly, three random groups of five unvaccinated ‘Amakihi were challenged with the same virus isolates. Vaccinated and unvaccinated ‘Amakihi challenged with FP had transient infections with no clinical signs of infection. Mortality in vaccinated ‘Amakihi challenged with PV1 and PV2 ranged from 0% (0/5) for PV1 to 60% (3/5) for PV2. Mortality in unvaccinated ‘Amakihi ranged from 40% (2/5) for PV1 to 100% (5/5) for PV2. Although the vaccine provided some protection against PV1, both potential for vaccine reversion and low efficacy against PV2 preclude its use in captive or wild honeycreepers.

Hawaii

The ecology, restoration, and management of southeastern floodplain ecosystems: A synthesis

Floodplain ecosystems of the southeastern United States provide numerous services to society, but hydrologic and geomorphic alterations, agricultural practices, water quality and availability, and urban development continue to challenge restorationists and managers at multiple spatial and temporal scales. These challenges are further exacerbated by tremendous uncertainty regarding climate and land use patterns and natural variability in these systems. The symposium from which the papers in 2009 ensued was organized to provide a critical evaluation of current natural resource restoration and management practices to support the sustainability of floodplain ecosystem functions in the southeastern United States. In this paper we synthesize these concepts and evaluate restoration and conservation techniques in light of our understanding of these ecosystems. We also discuss current and future challenges and attempt to identify new approaches that may facilitate the long-term sustainability of southeastern floodplain systems. We conclude that integration of disciplines and approaches is necessary to meet the floodplain conservation challenges of the coming century. Integration will not only include purposeful dialogue between interdisciplinary natural resource professionals, but it also is necessary to sincerely engage the public about goals, objectives, and desirable outcomes of floodplain ecosystem restoration.

Southeastern Floodplain systems

Colorado River Basin Actionable and Strategic Integrated Science and Technology Project—Science strategy

The U.S. Geological Survey (USGS) conducts a wide variety of science that improves understanding of droughts and their effects on ecosystems and society. This work includes data collection and monitoring of aquatic and terrestrial systems; assessment and analysis of patterns, trends, drivers, and impacts of drought; development and application of predictive models; and delivery of information and decision-making tools to stakeholders. Stakeholders, which include Federal, Tribal, State, and local agencies, nongovernmental organizations, and others, use this information to anticipate, assess, react to, and mitigate drought conditions and impacts. There is no obvious near-term solution to reduce the frequency and severity of droughts or to mitigate drought impacts. Multidecadal drought is a “grand challenge” that benefits from integration of existing technolo­gies, data, knowledge, and models across related and dispa­rate disciplines, facilitated by new science and technology. In response, the USGS initiated a new integrated-science approach in the Colorado River Basin in 2020. The Colorado River Basin was specifically selected because of concerns about future drought and its consequences for the region. This document explains how the Colorado River Basin Actionable and Strategic Integrated Science and Technology (ASIST) project extends and enhances the science supported by USGS Mission Areas and Programs and articulates scientific gaps and stakeholder needs to identify and reduce drought risks. The approach seeks to answer complex Earth science questions developed in partner­ship with stakeholders about severe long-term drought. An inte­grated approach is required to tackle these complex questions, which any single science discipline cannot answer on its own. In addition to increased understanding of drought and drought effects in complex systems, the Colorado River Basin ASIST project was designed to improve efficiencies through rapid location of a broad array of data sources, assembly of model-ready multidisciplinary data, and delivery of actionable science to stakeholders at the speeds and scales needed for deci­sion making. The project team identified the following actions needed for USGS to implement and advance an integrated science approach in the Colorado River Basin: (1) engage with stakeholders to document their needs and iteratively co-produce science and science delivery tools to address these needs, (2) integrate monitoring and observation systems developed by USGS and other agencies that track droughts and their effects, (3) collect and provide analysis-ready data to support integrated applications, (4) integrate data and model connections to predict multiple drought impacts, (5) conduct multidisciplinary coor­dination to improve interpretations, (6) leverage the knowledge base across USGS to enhance decision making, and (7) support the development of new integrated science approaches and technologies that provide analysis and management tools that can be used to adapt to the effects of drought in the Colorado River Basin. Proposals for initial short-term use-case projects were solicited, a subset of which was selected for funding to test implementation of these actions. Additionally, the project organized and convened a series of science and technology collaboration workshops in the USGS focused on challenges that were identified and prioritized by the short-term use-case projects and during the initial stakeholder analysis. These work­shops were designed to bring together diverse perspectives to discuss science and technology challenges, stakeholder needs, capabilities, and knowledge gaps, with the goal of determin­ing how the USGS can address challenges, identify future opportunities for continued engagement between participants, and inform the next steps for the Colorado River Basin ASIST project. Continuing to collaboratively engage with a wide range of stakeholders using an integrated approach will provide a suitable foundation of data and tools to formulate actionable intelligence for predicting droughts and informing adaptation to the effects of long-term drought in a holistic, timely, and effective manner.

Arizona, California, Colorado, Nevada, New Mexico,

U.S. Geological Survey (USGS), Western Region: Coastal ecosystem responses to influences from land and sea, Coastal and Ocean Science

Sea otters and the nearshore ecosystems they inhabit-from highly urbanized California to relatively pristine Alaska-are the focus of a new multidisciplinary study by scientists with the U.S. Geological Survey (USGS) and a suite of international, academic and government collaborators. The Coastal Ecosystem Responses to Influences from Land and Sea project will investigate the many interacting variables that influence the health of coastal ecosystems along the Northeast Pacific shore. These ecosystems face unprecedented challenges, with threats arising from the adjacent oceans and lands. From the ocean, challenges include acidification, sea level rise, and warming. From the land, challenges include elevated biological, geological and chemical pollutants associated with burgeoning human populations along coastlines. The implications of these challenges for biological systems are only beginning to be explored. Comparing sea otter population status indicators from around the northeastern Pacific Rim, will begin the process of defining factors of coastal ecosystem health in this broad region.

Fact Sheet

Serious games experiment toward agent-based simulation

We evaluate the potential for serious games to be used as a scientifically based decision-support product that supports the United States Geological Survey’s (USGS) mission--to provide integrated, unbiased scientific information that can make a substantial contribution to societal well-being for a wide variety of complex environmental challenges. Serious or pedagogical games are an engaging way to educate decisionmakers and stakeholders about environmental challenges that are usefully informed by natural and social scientific information and knowledge and can be designed to promote interactive learning and exploration in the face of large uncertainties, divergent values, and complex situations. We developed two serious games that use challenging environmental-planning issues to demonstrate and investigate the potential contributions of serious games to inform regional-planning decisions. Delta Skelta is a game emulating long-term integrated environmental planning in the Sacramento-San Joaquin Delta, California, that incorporates natural hazards (flooding and earthquakes) and consequences for California water supplies amidst conflicting water interests. Age of Ecology is a game that simulates interactions between economic and ecologic processes, as well as natural hazards while implementing agent-based modeling. The content of these games spans the USGS science mission areas related to water, ecosystems, natural hazards, land use, and climate change. We describe the games, reflect on design and informational aspects, and comment on their potential usefulness. During the process of developing these games, we identified various design trade-offs involving factual information, strategic thinking, game-winning criteria, elements of fun, number and type of players, time horizon, and uncertainty. We evaluate the two games in terms of accomplishments and limitations. Overall, we demonstrated the potential for these games to usefully represent scientific information within challenging environmental and ecosystem-management contexts and to provide an interactive way of learning about the complexity of interactions between people and natural systems. Further progress on the use of pedagogical games to fulfill the USGS mission will require collaboration among scientists, game developers, educators, and stakeholders. We conclude that as the USGS positions itself to communicate and convey the results of multiple science strategies, including natural-resource security and sustainability, pedagogical game development and agent-based modeling offer a means to (1) establish interdisciplinary and collaborative teams with a focused integrated outcome; (2) contribute to the modeling of interaction, feedback, and adaptation of ecosystems; and (3) enable social learning through a broadly appealing and increasingly sophisticated medium.

Open-File Report

Technical note—Relative variability of selected turbidity standards and sensors in use by the U.S. Geological Survey

The challenges associated with field measurements of turbidity are well known and result primarily from differences in reported values that depend on instrument design and the resulting need for reporting units that are specific to those designs. A critical challenge for making comparable turbidity measurements is the selection and use of appropriate turbidity standards for sensor calibration. The accepted primary standards for turbidity measurements use formazin made from scratch; all others should relate back to readings obtained using standard formazin. However, because turbidity is a qualitative property of water, comparing standards is not as simple as it is for many chemical measurements. The U.S. Geological Survey “National Field Manual for the Collection of Water-Quality Data” currently allows for the use of two standards, formazin and polymer beads, for the calibration of field turbidimeters. Another challenge for making comparable turbidity measurements is selection of turbidity sensors. A turbidity sensor commonly used in the U.S. Geological Survey, the Yellow Springs Instruments (YSI) 6136, has been replaced by the manufacturer with the YSI EXO turbidity sensor. Both sensors operate on the same principles but have slight design differences that result in readings that are not directly comparable on a 1:1 basis. Differences in calibration standards and sensors are a cause of concern in ongoing studies that require switching calibration standards or sensor types, and for comparisons of data collected with sensors calibrated by using different calibration standards, different sensor types, or both. The objectives of this study were to evaluate the response of two YSI turbidity sensors in both formazin-based standards (StablCal) and polymer turbidity standards (in this case YSI brand; however, other brands are available) and to compare the performance of the YSI EXO and YSI 6136 turbidity sensors under similar laboratory and environmental (field) conditions. To quantify these differences, a series of laboratory and field side-by-side comparisons were conducted. Nine field comparisons of YSI EXO and YSI 6136 sensors were performed at site locations in Kansas and Virginia. Two field comparisons of StablCal and polymer calibration standards were performed in Kansas, both using YSI EXO turbidity sensors. Five laboratory comparisons between the YSI EXO and YSI 6136 turbidity sensors were performed, and seven laboratory comparisons between StablCal and polymer turbidity standards were performed using YSI EXO turbidity sensors. The results can help the USGS and others better understand how turbidity data can differ depending on the sensors and calibration standards used. Key findings and conclusions include the following— Regardless of the comparison, strong linear associations were typically found across all measures of turbidity under field and laboratory conditions, but linear associations were not necessarily 1:1 and varied by type of standard, type of sensor, and field and laboratory conditions. The mean relative percentage differences for all but a few comparisons were greater than 10 percent but less than 30 percent. However, differences were inconsistent across the laboratory and field conditions measured in this study, precluding the ability to formulate definitive statements of consistent directional bias depending on the type of standard or sensor used. Across all tests and a range of 0 to 1,000 formazin nephelometric units (FNU), no consistent bias between the YSI EXO and YSI 6136 turbidity sensors was observed, but either regression relations were near 1:1 or the YSI EXO turbidity readings were lower than those measured with the YSI 6136. Relative percentage differences typically exceeded the 10- and 30-percent benchmarks. However, most (about 95 percent) of the absolute differences between turbidity values measured with the YSI EXO and those measured with the YSI 6136 sensors were less than 20 FNU. In laboratory experiments, when turbidity was “constant,” the absolute difference between YSI EXO and YSI 6136-measured turbidity values ranged from near 0 FNU to nearly 400 FNU (over a range of 0 to 1,000 FNU). Substantial variability in turbidity measurements makes comparison between standards and sensor types challenging. Given the inherent variability in turbidity measurements and the lack of consistent bias between calibration standards or sensors, changing methods during an ongoing study would compromise the comparability of the data. The effect of changing methods ultimately depends on study objectives. If method changes are required, laboratory- and field-based comparisons across a range of conditions ideally would be conducted to determine whether site-specific biases can be identified.

Open-File Report

Capacity assessment for Earth Monitoring, Analysis, and Prediction (EarthMAP) and future integrated monitoring and predictive science at the U.S. Geological Survey

Executive Summary Managers of our Nation’s resources face unprecedented challenges driven by the convergence of increasing, competing societal demands and a changing climate that affects the stability, vulnerability, and predictability of those resources. To help meet these challenges, the scientific community must take advantage of all available technologies, data, and integrative Earth systems modeling capacity to better inform resource and risk management decisions. This is the overarching goal of the U.S. Geological Survey (USGS) Earth Monitoring, Analysis, and Prediction (EarthMAP) vision: “By 2030, the USGS will deliver well integrated observations and predictions of the future state of natural systems—water, ecosystems, energy, minerals, hazards—at regional and national scales, working primarily with federal, state, and academic partners to develop and operate the capability” (U.S. Geological Survey, 2021). Providing more integrated Earth systems science and actionable information to decision makers, stakeholders, and the public requires a better understanding of the depth and distribution of existing capacity (capabilities, tools, and techniques) across the Bureau. Identifying existing capacity is also a critical first step toward gap analysis and targeted investments to increase capacity over time. The USGS formed a Capacity Assessment Team (CAT) and charged it with (1) conducting a Request for Information (RFI) to identify existing USGS expertise and activities supportive of integrated and predictive science to inform decision making, (2) developing a strategy and proof-of-concept for a continuously updated capacity assessment capability, and (3) identifying lessons learned to inform development of best practices for future capacity assessment efforts. The RFI took the form of a survey, with content guided by the science and technology needs identified in a USGS report titled “Grand Challenges for Integrated U.S. Geological Survey Science—A Workshop Report” (Jenni and others, 2017). The 44-question survey provided respondents the ability to rate their level of experience with a suite of priority disciplines, analysis and modeling approaches, technologies, and stakeholder engagement strategies and to enter optional narrative text for supporting context. An introductory portion focused on general science capacity assessment, followed by three sections targeting capabilities related to the foundational components of EarthMAP: (1) data and information integration, (2) integrated predictive science, and (3) actionable information. The survey results provided a high-level snapshot of USGS capacity in the targeted areas. Respondents (1,035 individuals) represented approximately 13 percent of the USGS across all mission areas and regions. Seventy-four percent of the respondents held a science-focused position title and the remainder had position titles in information technology, computer science, management, administrative, or other (contractors, volunteers, emeritus, and unknown). To provide greater insight into respondent capabilities and activities, information from the U.S. Department of the Interior and USGS enterprise information systems were used to further characterize topical expertise and organizational associations of survey respondents. To address the ongoing need to assess the Bureau’s capacity to address integrated predictive science priorities, the CAT developed a software-based proof-of-concept called the Integrated Science Assessment Information Database (iSAID) for assembling various information sources together toward making the full extent of USGS capabilities and scientific assets available for routine capacity assessment. This proof-of-concept is intended to serve as a catalyst for further development. The process of implementing the EarthMAP capacity assessment survey, analyzing survey responses, and developing the proof-of-concept resulted in lessons learned, findings, and recommendations. Example scenarios throughout the report demonstrate how capacity assessment data can inform science planning. Three overarching findings and recommendations are: (1) Finding: Capacity is limited in some critical disciplines, skills, and technology applications, but “sufficient” depends on the question and the need relative to availability at a given point in time. Recommendation: Develop an on-demand capacity assessment framework that enables rapid identification and evaluation of existing and available expertise to support decision needs as they arise. (2) Finding: Institutional barriers and lack of awareness constrain the ability of USGS staff to adopt new technologies, collaborate across administrative boundaries, and deliver actionable information to stakeholders in a timely manner. However, these barriers are not universally experienced. Recommendation: Pursue more targeted inquiries to clarify which institutional barriers are obstructing the adoption of new technologies and approaches or the sharing of expertise and equipment across organizational and regional boundaries. These inquiries should inform USGS leadership, mission areas, and regions whether policies can be revised or whether a lack of understanding is creating perceived obstacles. Highlight cases when staff have successfully adopted new technologies and approaches to advance EarthMAP priorities and provide actionable information in a timely manner to spread awareness of how perceived obstacles can be navigated and overcome when appropriate. (3) Finding: Examples of people and projects integrating across disciplines and scales and applying advanced approaches to meet complex stakeholder needs exist. Such examples provide transfer value across the spectrum from approach to decision making. Many projects, already underway, appear to meet elements of the EarthMAP vision, and the USGS has people who can provide leadership in multiple types of specific integrated science efforts. Recommendation: Use these findings as a starting point for near-term strategic planning for integrated science. Highlight, incentivize, and build on existing interdisciplinary predictive science and information delivery activities across the USGS to advance toward further realization of an EarthMAP capacity. The CAT efforts to develop and assess existing USGS capacity to advance the EarthMAP vision revealed a fundamental challenge for not only this effort but any effort to assess existing capacity: A considerable amount of thought, time, and effort is required to survey and assess capabilities and tools available to support a given need, yet best results are still likely to provide an incomplete assessment. To better meet the frequent need to assess capabilities, tools, products, and projects that address an expressed strategic priority, the CAT proposes the concept of an on-demand capacity assessment framework supported by a software package that dynamically pulls and integrates information from existing USGS information systems and public domain registries. Although existing USGS enterprise information systems currently lack the structure, cross-system consistency, interoperability, and stability to support a continuously updated capacity assessment capability, we identify reasonable near-term steps to improve the utility of information gathered on expertise and project capacity and to improve the consistency and completeness of information and the ability of USGS systems to share that information. The ability to search and characterize this information will make future assessments of capacity faster, more complete, more efficient, and more targeted. This approach would grow the Bureau’s capacity knowledge over time, iteratively improving the ability to access, leverage, and synthesize existing capabilities and assets as well as identify and fill critical gaps. The greatest promise for developing integrated science could lie in linking across existing projects and expertise to create a multi-project capacity for addressing large, complex environmental issues.

Open-File Report

An international borderland of concern: Conservation of biodiversity in the Lower Rio Grande Valley

The Lower Rio Grande Valley (LRGV) of southern Texas is located on the United States-Mexico borderland and represents a 240-kilometer (150-mile) linear stretch that ends at the Gulf of Mexico. The LRGV represents a unique transition between temperate and tropical conditions and, as such, sustains an exceptionally high diversity of plants and animals—some of them found in few, or no other, places in the United States. Examples include Leopardus pardalis albescens (northern ocelot) and Falco femoralis septentrionalis (northern aplomado falcon)—both endangered in the United States and emblematic of the LRGV. The U.S. Fish and Wildlife Service (USFWS) manages three national wildlife refuges (Santa Ana, Lower Rio Grande Valley, and Laguna Atascosa) that together make up the South Texas Refuge Complex, which actively conserves biodiversity in about 76,006 hectares (187,815.5 acres) of native riparian and upland habitats in the LRGV. These diminished habitats harbor many rare, threatened, and endangered species. This report updates the widely used 1988 USFWS biological report titled “Tamaulipan Brushland of the Lower Rio Grande Valley of South Texas: Description, Human Impacts, and Management Options” by synthesizing nearly 400 peer-reviewed scientific publications that have resulted from biological and sociological research conducted specifically in the four Texas counties of the LRGV in the past nearly 30 years. This report has three goals: (1) synthesize scientific insights gained since 1988 related to the biology and management of the LRGV and its unique biota, focusing on flora and fauna of greatest conservation concern; (2) update ongoing challenges facing Federal and State agencies and organizations that focus on conservation or key natural resources in the LRGV; and (3) redefine conservation opportunities and land-acquisition strategies that are feasible and appropriate today, given the many new and expanding constraints that challenge conservation activities in the LRGV. The LRGV faces every contemporary conservation challenge of the 21st century, but ongoing human population growth and its associated demands, international border issues, and oil, gas, and alternative energy development dominate impacts that affect conservation in the LRGV. Continued careful syntheses of existing and future information collected in the LRGV are needed on many biological and sociological topics to guide conservation activities. Quick response will no doubt be necessary to face contemporary and difficult-to-predict challenges such as climate change, diminished water availability and quality, spread of invasive species, and habitat loss and fragmentation. Complexities of a guarded international borderland add pressure to small patches of native habitat that remain in many places of the LRGV, particularly along the Rio Grande. Large connected corridors of restored native habitat could be the best option to maintain, and even enhance, the exceptional biodiversity of the LRGV in the face of exceptional human demand.

Texas

A structured decision-making framework for managing cyanobacterial harmful algal blooms in New York State parks

Cyanobacteria are increasingly a global water-quality concern because of the potential for these organisms to develop into potentially harmful blooms that affect ecological, economic, and public health. Cyanobacterial harmful algal blooms (CyanoHABs) can lead to a decrease in water quality and affect many of the recreational and ecological benefits of parks that include lakes. The New York State Office of Parks, Recreation and Historic Preservation (OPRHP) is a State agency within the New York State Executive Department charged with the operation of State parks and historic sites. Many New York State parks include lakes or other freshwater bodies, which can be susceptible to CyanoHABs. The OPRHP faces difficult decisions regarding prevention of and response to CyanoHABs. The U.S. Geological Survey partnered with the OPRHP and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing CyanoHABs in OPRHP parks. Two parks, Moreau Lake State Park and Rockland Lake State Park, served as case studies to motivate and test the template. This report describes how the principles of structured decision making can be used to navigate the challenges associated with managing CyanoHABs in OPRHP parks. Management objectives and strategies for CyanoHABs in parks are described, strategies to evaluate consequences and manage tradeoffs are discussed, and potential challenges to the implementation of preferred alternatives are considered. General guidance is provided so the OPRHP can undertake the structured decision-making process for CyanoHABs in any of its parks. In addition, this report represents the first effort to create a strategy for applying decision analysis tools to the complex natural resource challenge of CyanoHAB mitigation and management. The case studies and template are intended to serve as an example that natural resource managers faced with CyanoHABs challenges can use to inform their decision-making processes.

New York

Evaluation of remote mapping techniques for earthquake-triggered landslide inventories in an urban subarctic environment: A case study of the 2018 Anchorage, Alaska Earthquake

Earthquake-induced landslide inventories can be generated using field observations but doing so can be challenging if the affected landscape is large or inaccessible after an earthquake. Remote sensing data can be used to help overcome these limitations. The effectiveness of remotely sensed data to produce landslide inventories, however, is dependent on a variety of factors, such as the extent of coverage, timing, and data quality, as well as environmental factors such as atmospheric interference (e.g., clouds, water vapor) or snow and vegetation cover. With these challenges in mind, we use a combination of field observations and remote sensing data from multispectral, light detection and ranging (lidar), and synthetic aperture radar (SAR) sensors to produce a ground failure inventory for the urban areas affected by the 2018 magnitude (M w ) 7.1 Anchorage, Alaska earthquake. The earthquake occurred during late November at high latitude (∼61°N), and the lack of sunlight, persistent cloud cover, and snow cover that occurred after the earthquake made remote mapping challenging for this event. Despite these challenges, 43 landslides were manually mapped and classified using a combination of the datasets mentioned previously. Using this manually compiled inventory, we investigate the individual performance and reliability of three remote sensing techniques in this environment not typically hospitable to remotely sensed mapping. We found that differencing pre- and post-event normalized difference vegetation index maps and lidar worked best for identifying soil slumps and rapid soil flows, but not as well for small soil slides, soil block slides and rock falls. The SAR-based methods did not work well for identifying any landslide types because of high noise levels likely related to snow. Some landslides, especially those that resulted in minor surface displacement, were identifiable only from the field observations. This work highlights the importance of the rapid collection of field observations and provides guidance for future mappers on which techniques, or combination of techniques, will be most effective at remotely mapping landslides in a subarctic and urban environment.

Alaska

Immunization of salmonids against Yersinia ruckeri: Significance of humoral immunity and cross protection between serotypes

Brook trout ( Salvelinus fontinalis ) were immunized with bacterins containing either Serotype 1 or 2 isolates of Yersinia ruckeri to determine the relative degree of cross-protection afforded when the fish were challenged with the homologous or heterologous serotype. While fish immunized with pH-lysed bacterins produced highly specific agglutinins that did not cross-react with antigens derived from a heterologous serotype of Y. ruckeri all fish were protected against experimental challenge, regardless of which serotype was used for bacterin production and experimental challenge. Other experiments indicated that brook trout injected intraperitoneally with highly specific antibodies could not be passively immunized against experimental challenge.

Journal of Wildlife Diseases