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At least 415 records · Page 23Linked to original sources
USGS2015

Habitats of North American sea ducks.

Breeding, molting, fall and spring staging, and wintering habitats of the sea duck tribe Mergini are described based on geographic locations and distribution in North America, geomorphology, vegetation and soil types, and fresh water and marine characteristics. The dynamics of habitats are discussed in light of natural and anthropogenic events that shape areas important to sea ducks. Strategies for sea duck habitat management are outlined and recommendations for international collaboration to preserve key terrestrial and aquatic habitats are advanced. We follow the definition of habitat advanced by Odum (1971), which is the place or space where an organism lives. Weller (1999) emphasized that habitats for waterbirds required presence of sufficient resources (i.e., food, water, cover, space) for maintenance during a portion of their annual cycle. Habitats exploited by North American sea ducks are diverse, widespread across the continent and adjacent marine waters and until recently, most were only superficially known. A 15-year-long effort funded research on sea duck habitats through the Sea Duck Joint Venture and the Endangered or Threatened Species programs of the United States and Canada. Nevertheless, important gaps remain in our understanding of key elements required by some species during various life stages. Many significant habitats, especially staging and wintering sites, have been and continue to be destroyed or altered by anthropogenic activities. The goal of this chapter is to develop a comprehensive summary of marine, freshwater, and terrestrial habitats and their characteristics by considering sea duck species with similar needs as groups within the tribe Mergini. Additionally, we examine threats and changes to sea duck habitats from human-caused and natural events. Last, we evaluate conservation and management programs underway or available for maintenance and enhancement of habitats critical for sea ducks.

Book chapter↗
USGS2016

Evolution of viral virulence: empirical studies

The concept of virulence as a pathogen trait that can evolve in response to selection has led to a large body of virulence evolution theory developed in the 1980-1990s. Various aspects of this theory predict increased or decreased virulence in response to a complex array of selection pressures including mode of transmission, changes in host, mixed infection, vector-borne transmission, environmental changes, host vaccination, host resistance, and co-evolution of virus and host. A fundamental concept is prediction of trade-offs between the costs and benefits associated with higher virulence, leading to selection of optimal virulence levels. Through a combination of observational and experimental studies, including experimental evolution of viruses during serial passage, many of these predictions have now been explored in systems ranging from bacteriophage to viruses of plants, invertebrates, and vertebrate hosts. This chapter summarizes empirical studies of viral virulence evolution in numerous diverse systems, including the classic models myxomavirus in rabbits, Marek's disease virus in chickens, and HIV in humans. Collectively these studies support some aspects of virulence evolution theory, suggest modifications for other aspects, and show that predictions may apply in some virus:host interactions but not in others. Finally, we consider how virulence evolution theory applies to disease management in the field.

Book chapter↗
USGS1995

Ecology and conservation of the Marbled Murrelet in North America: An overview

Over the past decade, the Marbled Murrelet has become a focus of much controversy. It was listed as threatened in Washington, Oregon, and California by the U.S. Fish and Wildlife Service in February 1993. In order to aid the various agencies with management, the Marbled Murrelet Conservation Assessment was formed to bring together scientists, managers, and others to gather all the available data on this small seabird. This volume of research is the culmination of that effort. In this chapter, we integrate the results of the investigations and summaries on the past history, present status, and possible future of the species, based on the data presented in this volume and other published research. We also propose what we consider the most important research needs. Then, based on the findings of this volume, we suggest actions for management to help ensure the survival of the species.

Book chapter↗
USGS2005

Diseases of salamanders

Few diseases are reported in salamanders. Two notable exceptions are infections by Ranavirus and Ichthyophonus . Except for mortality events associated with ranaviruses in tiger salamanders ( Ambystoma tigrinum ) and spotted salamanders ( A. maculatum ), dieoffs of salamanders are rarely detected or reported. Diseases presented in this chapter are those encountered in free-living salamanders of the United States and Canada. A few additional diseases that are occasionally seen in captive and zoo animals have been reviewed by Green (2001). This chapter on Diseases of Salamanders will address five common infectious diseases of free-living larval and adult salamanders: Ranavirus (iridovims) infection, chytrid fungal infection, ichthyophoniasis, Clinostomum metacercaria , chiggers. Many helminthic parasites infect salamanders, but with few exceptions, these infections are unlikely to cause illness (morbidity) or death (mortality). Readers are referred to parasitology texts for a review of protozoan, helminthic and ectoparasitic organisms of amphibians (Flynn, 1973; Poynton and Whitaker, 2001).

Book chapter↗
USGS2016

Critical elements in sediment-hosted deposits (clastic-dominated Zn-Pb-Ag, Mississippi Valley-type Zn-Pb, sedimentary rock-hosted Stratiform Cu, and carbonate-hosted Polymetallic Deposits): A review: Chapter 12

Some sediment-hosted base metal deposits, specifically the clastic-dominated (CD) Zn-Pb deposits, carbonate-hosted Mississippi Valley-type (MVT) deposits, sedimentary-rock hosted stratiform copper deposits, and carbonate-hosted polymetallic (“Kipushi type”) deposits, are or have been important sources of critical elements including Co, Ga, Ge, and Re. The generally poor data concerning trace element concentrations in these types of sediment-hosted ores suggest that there may be economically important concentrations of critical elements yet to be recognized.

Book chapter↗
USGS2013

Photography applications

Photographic imaging is the oldest form of remote sensing used in coral reef studies. This chapter briefly explores the history of photography from the 1850s to the present, and delves into its application for coral reef research. The investigation focuses on both photographs collected from low-altitude fixed-wing and rotary aircraft, and those collected from space by astronauts. Different types of classification and analysis techniques are discussed, and several case studies are presented as examples of the broad use of photographs as a tool in coral reef research.

Book chapter↗
USGS2009

Symbiotic lifestyle expression by fungal endophytes and the adaptation of plants to stress: unraveling the complexities of intimacy

The fossil record indicates that fungal symbionts have been associated with plants since the Ordovician period (approximately 400 million years ago), when plants first became established on land (Pirozynski and Malloch, 1975; Redecker et al., 2000; Remy et al., 1994; Simon et al., 1993). Transitioning from aquatic to terrestrial habitats likely presented plants with new stresses, including periods of desiccation. Since symbiotic fungi are known to confer drought tolerance to plants (Bacon, 1993; Read and Camp, 1986), it has been suggested that fungal symbiosis was involved with or responsible for the establishment of land plants (Pirozynski and Malloch, 1975). Symbiosis was first defined by De Bary in 1879, and since that time, all plants in natural ecosystems have been found to be colonized with fungal and bacterial symbionts. It is clear that individual plants represent symbiotic communities with microorganisms associated in or on tissues below- and aboveground. There are two major classes of fungal symbionts associated with internal plant tissues: fungal endophytes that reside entirely within plants and may be associated with roots, stems leaves, or flowers; and mycorrhizal fungi that reside only in roots but extend out into the rhizosphere. In addition, fungal endophytes may be divided into two classes: (1) a relatively small number of fastidious species that are limited to a few monocot hosts (Clay and Schardl, 2002), and (2) a large number of tractable species with broad host ranges, including both monocots and eudicots (Stone et al., 2000). While significant resources and research have been invested in mycorrhizae and class 1 endophytes, comparatively little is known about class 2 endophytes, which may represent the largest group of fungal symbionts. This is partially because the symbiotic functionalities of class 2 endophytes have only recently been elucidated and shown to be responsible for the adaptation of some plants to high-stress environments (Redman et al., 1999, 2001, 2002a; Arnold et al., 2003; Dingle and McGee, 2003; Ernst et al., 2003). In this chapter, we focus on symbiotic interactions between class 2 endophytes and a variety of monocot and eudicot host species. Specifically, we will discuss the ability of endophytes to express more than one symbiotic lifestyle, fungal taxonomy vs. lifestyle expression, the adaptive nature of symbioses, mechanisms of symbiotically conferred stress tolerance, and the evolutionary implications of adaptive symbiosis. We will refer to class 2 endophytes as fungal endophytes throughout the text.

Book chapter↗
USGS2021

Economic geology and environmental characteristics of antimony deposits

Antimony is commonly listed as a critical mineral, particularly in the United States and European Union [1]. Its criticality, or supply risk, is derived from a combination of economic vulnerability, disruption potential of supply, and trade exposure [2].Disruption potential relates a country’s ability and willingness to supply a commodity. Commodities for which supply is concentrated in the fewest countries have the greatest potential for supply disruption, trade exposure, and economic vulnerability. In 2018, approximately 61% of the world production of antimony was mined from China, followed by Russia (20%) and Tajikistan (10%) [3] (Fig. 3.1). Several reviews of antimony as a critical mineral have been recently published [4, 5]. The uses of antimony can be divided into three main categories: metal products, non-metal uses, and flame retardants [5]. Most metallic antimony use is inlead-acid batteries. Antimony trioxide (Sb 2 O 3 ) combined with halogenated com-pounds is used as a fire retardant in plastics, fabrics, and other applications. Other non-metallic uses include as a catalyst for plastics, and in the glass industry. Emerging uses include data storage and novel photovoltaic cells. Recycling of batteries represents an important reuse of antimony, but other uses of antimony do not lend themselves to recycling. This chapter describes mineral deposit types that are primary sources of antimony, and environmental effects related to their mining. Antimony can be re-covered as either a primary commodity from some deposits or as a by product commodity from some gold or silver deposits. Environmental risks associated with antimony mining include those related to mining in general, such as the acid-generating potential of solid mine waste, and some issues specific to antimony, as described below.

Book chapter↗
USGS2015

Phylogenetics, phylogeography and population genetics of North American sea ducks (tribe: Mergini)

Many environments occupied by North American sea ducks are remote and difficult to access, and as a result, detailed information about life history characteristics that drive population dynamics within and across species is limited. Nevertheless, progress on this front during the past several decades has benefited by the application of genetic technologies, and for several species, these technologies have allowed for concomitant tracking of population trends and genetic diversity, delineation of populations, assessment of gene flow among metapopulations, and understanding of migratory connectivity between breeding and wintering grounds. This chapter provides an overview of phylogenetic, phylogeographic, and population genetics studies of North American sea duck species, many of which have sought to understand the major and minor genetic divisions within and among sea duck species, and most of which have been conducted with the understanding that the maintenance of genetic variation in wild sea duck populations is fundamental to the group’s long-term persistence.

Book chapter↗
USGS2009

Applications of stable isotopes for regional to national-scale water quality and environmental monitoring programs

Isotopes are a potentially powerful component of monitoring and assessment programs aimed at quantifying and mitigating alterations to environments from human activities. In particular, isotopic techniques have proved useful for tracing sources and sinks of various pollutants in large river basins, wetlands, and airsheds. Many of these studies have been conducted at the regional to national scale by building on existing large-scale water, air, and ecological monitoring programs managed by federal and state agencies, and demonstrate the usefulness of isotopes as a complement to standard chemical and hydrological mass balance methods. This chapter presents an overview of how nitrate, particulate organic matter, and water isotopes can be used to interpret spatial patterns and temporal changes in pollution sources, biogeochemical processes, and ecosystem function in watersheds, at the regional to national scale. Examples from several recent and ongoing studies are presented. From the insights developed using varied sampling strategies and isoscapes, we suggest guidelines for future studies in biologically active and human-impacted rivers.

Book chapter↗
USGS2009

Managing Pacific salmon escapements: The gaps between theory and reality

There are myriad challenges to estimating intrinsic production capacity for Pacific salmon populations that are heavily exploited and/or suffering from habitat alteration. Likewise, it is difficult to determine whether perceived decreases in production are due to harvest, habitat, or hatchery influences, natural variation, or some combination of all four. There are dramatic gaps between the true nature of the salmon spawner/recruit relationship and the theoretical basis for describing and understanding the relationship. Importantly, there are also extensive practical difficulties associated with gathering and interpreting accurate escapement and run-size information and applying it to population management. Paradoxically, certain aspects of salmon management may well be contributing to losses in abundance and biodiversity, including harvesting salmon in mixed population fisheries, grouping populations into management units subject to a common harvest rate, and fully exploiting all available hatchery fish at the expense of wild fish escapements. Information on U.S. Pacific salmon escapement goal-setting methods, escapement data collection methods and estimation types, and the degree to which stocks are subjected to mixed stock fisheries was summarized and categorized for 1,025 known management units consisting of 9,430 known populations. Using criteria developed in this study, only 1% of U.S. escapement goals are by methods rated as excellent. Escapement goals for 16% of management units were rated as good. Over 60% of escapement goals have been set by methods rated as either fair or poor and 22% of management units have no escapement goals at all. Of the 9,430 populations for which any information was available, 6,614 (70%) had sufficient information to categorize the method by which escapement data are collected. Of those, data collection methods were rated as excellent for 1%, good for 1%, fair for 2%, and poor for 52%. Escapement estimates are not made for 44% of populations. Escapement estimation type (quality of the data resulting from survey methods) was rated as excellent for <1%, good for 30%, fair for 3%, poor for 22%, and nonexistent for 45%. Numerous recommendations for improvements in escapement mangement are made in this chapter. In general, improvements are needed on theoretical escapement management techniques, escapement goal setting methods, and escapement and run size data quality. There is also a need to change managers' and harvesters' expectations to coincide with the natural variation and uncertainty in the abundance of salmon populations. All the recommendations are aimed at optimizing the number of spawners-healthy escapements ensure salmon sustainability by providing eggs for future production, nutrients to the system, and genetic diversity.

Book chapter↗
USGS1997

Imperiled mammalian fauna of aquatic ecosystems in the Southeast: A management perspective

Management of imperiled mammals associated with aquatic ecosystems in the southeastern United States ranges from almost no management for some species to intensive, high-profile programs for others. Aquatic mammals are notoriously difficult to census because they are often secretive, trap-wary, relatively rare, or have extensive movement patterns. As a result, conservation efforts aimed at these animals often have been greatly hampered by a general lack of comprehensive population data. Historically, certain high-profile, "flagship" species have been the primary beneficiaries of management efforts. One of the earliest examples involves beaver, Castor canadensis , which had been reduced to a low ebb due to unregulated harvest and were subsequently live-trapped by state game officials in the 1940s and repatriated throughout the southeastern states. The success of this restocking program has exceeded expectations, and today beaver numbers have reached what many consider to be nuisance proportions in most states. Similar restocking stories can be told for muskrats ( Ondatra zibethicus ) and, to a limited extent, for river otters ( Lutra canadensis ). Unfortunately, other imperiled species of lesser economic or recreational value have not been as fortunate. Efforts to conserve these lower-profile species have been minimal or conservation problems so immense that their complete recovery has been unsuccessful. Wilson (1992) suggested that 20 percent of all species on earth may be lost to extinction in the next four decades. If this disaster should occur, it would rival the greatest geological extinction episodes. Certainly, conservationists need to explore new methods for preserving mammalian diversity. In this chapter we will discuss the resource management history of aquatic mammals which are imperiled in the Southeast. In doing so we define an aquatic mammal as any mammal that is directly or indirectly associated with aquatic ecosystems. Imperiled mammals are any mammalian species, subspecies, or population listed as endangered, threatened, or of special concern on any state or federal list, and also includes mammals experiencing long-term population declines or significant range contractions.

Book chapter↗
USGS2016

Methods for exploring uncertainty in groundwater management predictions

Models of groundwater systems help to integrate knowledge about the natural and human system covering different spatial and temporal scales, often from multiple disciplines, in order to address a range of issues of concern to various stakeholders. A model is simply a tool to express what we think we know. Uncertainty, due to lack of knowledge or natural variability, means that there are always alternative models that may need to be considered. This chapter provides an overview of uncertainty in models and in the definition of a problem to model, highlights approaches to communicating and using predictions of uncertain outcomes and summarises commonly used methods to explore uncertainty in groundwater management predictions. It is intended to raise awareness of how alternative models and hence uncertainty can be explored in order to facilitate the integration of these techniques with groundwater management.

Book chapter↗
USGS2014

Aquatic ecosystems as indicators of status and trends in water quality

This chapter provides an introduction and overview of the use of aquatic ecosystems as indicators of water quality. The monitoring of biological communities (fish, algae, and invertebrates) as a means of assessing water quality conditions is emphasized along with ecotoxicological studies and measures of ecosystem function. Issues related to the design, implementation, and analysis of monitoring programs are reviewed and discussed with the objective of continually improving water quality conditions through adaptive management .

Book chapter↗
USGS1998

Fish and wildlife species as sentinels of environmental endocrine disruption

This chapter provides an overview of the history and criteria for use of captive and free-ranging fish and wildlife (amphibians, reptiles, birds, and mammals) species as sentinels of potential environmental endocrine disruption. Biochemical, behavioral, physiological, immunological, genetic, reproductive, developmental, and ecological correlates of endocrine disruption in these sentinels are presented and reviewed. In addition, data needs to promote better use of sentinel species in the assessment of endocrine disruption are discussed.

Book chapter↗
USGS2015

Implications of climate and land use change

This chapter relates ecosystem services to climate change and land use. The bulk of the chapter focuses on ecosystem services and steepland land use in the humid Neotropics &ndash; what is lost with land-cover changed, and what is gained with various types of restoration that are sustainable given private ownership. Many case studies are presented later in the white paper. The USGS contribution relates to climate change and the role of extreme weather events in land-use planning.

Book chapter↗
USGS2020

Metamorphosis and the impact of contaminants on ecological subsidies

Animals with complex life histories such as aquatic insects and amphibians link freshwater and terrestrial ecosystems when they transition from water to land during development. This transition requires metamorphosis from juvenile to adult life stages. Metamorphosis is a stressful and ecologically sensitive life history event. Exposure to contaminants during juvenile development (before or during metamorphosis) can disrupt the complex process of metamorphosis, thereby altering the flow of organisms from water to land. This chapter reviews how ecological stressors impact the timing and success of metamorphosis. Key ideas include: (1) metamorphosis is a key event in the movement of subsidies from water to land, (2) mortality during metamorphosis is enhanced in the presence of contaminants, and (3) juvenile responses to contaminants may not predict adult responses, due to death during metamorphosis. Metamorphosis is a critical life history stage that should be accounted for in ecotoxicological studies.

Book chapter↗
USGS2011

Fuel loads and fuel type mapping

Correct description of fuel properties is critical to improve fire danger assessment and fire behaviour modeling, since they guide both fire ignition and fire propagation. This chapter deals with properties of fuel that can be considered static in short periods of time: biomass loads, plant geometry, compactness, etc. Mapping these properties require a detail knowledge of vegetation vertical and horizontal structure. Several systems to classify the great diversity of vegetation characteristics in few fuel types are described, as well as methods for mapping them with special emphasis on those based on remote sensing images.

Series in Remote Sensing↗