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Formulating the American Geophysical Union's Scientific Integrity and Professional Ethics Policy: Challenges and lessons learned
Creating an ethics policy for a large, diverse geosciences organization is a challenge, especially in the midst of the current contentious dialogue in the media related to such issues as climate change, sustaining natural resources, and responding to natural hazards. In 2011, the American Geophysical Union (AGU) took on this challenge, creating an Ethics Task Force to update their ethics policies to better support their new Strategic Plan and respond to the changing scientific research environment. Dialogue with AGU members and others during the course of creating the new policy unveiled some of the following issues to be addressed. Scientific results and individual scientists are coming under intense political and public scrutiny, with the efficacy of the science being questioned. In some cases, scientists are asked to take sides and/or provide opinions on issues beyond their research, impacting their objectivity. Pressure related to competition for funding and the need to publish high quality and quantities of papers has led to recent high-profile plagiarism, data fabrication, and conflict of interest cases. The complexities of a continuously advancing digital environment for conducting, reviewing, and publishing science has raised concerns over the ease of plagiarism, fabrication, falsification, inappropriate peer review, and the need for better accessibility of data and methods. Finally, students and scientists need consistent education and encouragement on the importance of ethics and integrity in scientific research. The new AGU Scientific Integrity and Ethics Policy tries to address these issues and provides an inspirational code of conduct to encourage a responsible, positive, open, honest scientific research environment.
Forecasting urban growth across the United States-Mexico border
The sister-city area of Nogales, Arizona, and Nogales, Sonora, Mexico, is known collectively as Ambos (both) Nogales. This area was historically one city and was administratively divided by the Gadsden Purchase in 1853. These arid-lands have limited and sensitive natural resources. Environmental planning can support sustainable development to accommodate the predicted influx of population. The objective of this research is to quantify the amount of predicted urban growth for the Ambos Nogales watershed to support future planning for sustainable development. Two modeling regimes are explored. Our goal is to identify possible growth patterns associated with the twin-city area as a whole and with the two cities modeled as separate entities. We analyzed the cross-border watershed using regression analysis from satellite images from 1975, 1983, 1996, and 2002 and created urban area classifications. We used these classifications as input to the urban growth model, SLEUTH, to simulate likely patterns of development and define projected conversion probabilities. Model results indicate that the two cities are undergoing very different patterns of change and identify locations of expected growth based on historical development. Growth in Nogales, Arizona is stagnant while the urban area in Nogales, Sonora is exploding. This paper demonstrates an application that portrays how future binational urban growth could develop and affect the environment. This research also provides locations of potential growth for use in city planning.
Toward linking maize chemistry to archaeological agricultural sites in the North American Southwest
Maize (Zea mays L.) was the staple domestic food crop for Ancestral Pueblo people throughout the northern American Southwest. It is thought to have been the basic food of the inhabitants of Chaco Canyon. New Mexico, a location that was a major centre of Ancestral Pueblo building and population during the 11th and early 12th centuries AD. Modern heirloom varieties of Native American corn have been difficult to grow in experimental fields in Chaco Canyon. Given an abundance of apparent storage structures in Chacoan buildings, it is possible that some corn recovered from archaeological contexts, was imported from surrounding areas. The ultimate goal of this research is to determine whether the corn in Chaco Canyon was grown locally or imported. This paper establishes the feasibility of a method to accomplish this goal. This study reports the results of using inductively coupled plasma-mass spectrometric (ICP-MS) instrumentation to determine chemical constituents of experimental fields and modern heirloom varieties of Native American corn. Analysis of 19 elements is adequate to differentiate soil and corn from three field areas. These results are promising: however, a number of problems, including post-depositional alterations in maize, remain to be solved. ?? 2001 Academic Press.
Prospects for reconstructing paleoenvironmental conditions from organic compounds in polar snow and ice
Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.
Targeted stock identification using multilocus genotype 'familyprinting'
We present an approach to stock identification of small, targeted populations that uses multilocus microsatellite genotypes of individual mating adults to uniquely identify first- and second-generation offspring in a mixture. We call the approach ‘familyprinting’; unlike DNA fingerprinting where tissue samples of individuals are matched, offspring from various families are assigned to pairs of parents or sets of four grandparents with known genotypes. The basic unit of identification is the family, but families can be nested within a variety of stock units ranging from naturally reproducing groups of fish in a small tributary or pond from which mating adults can be sampled to large or small collections of families produced in hatcheries and stocked in specific locations. We show that, with as few as seven alleles per locus using four loci without error, first-generation offspring can be uniquely assigned to the correct family. For second-generation applications in a hatchery more alleles per locus (10) and loci (10) are required for correct assignment of all offspring to the correct set of grandparents. Using microsatellite DNA variation from an Atlantic salmon ( Salmo solar ) restoration river (Connecticut River, USA), we also show that this population contains sufficient genetic diversity in sea-run returns for 100% correct first-generation assignment and 97% correct second-generation assignment using 14 loci. We are currently using first- and second-generation familyprinting in this population with the ultimate goal of identifying stocking tributary. In addition to within-river familyprinting, there also appears to be sufficient genetic diversity within and between Atlantic salmon populations for identification of ‘familyprinted’ fish in a mixture of multiple populations. We also suggest that second-generation familyprinting with multiple populations may also provide a tool for examining stock structure. Familyprinting with microsatellite DNA markers is a viable method for identification of offspring of randomly mating adults from small, targeted stocks and should provide a useful addition to current mixed stock analyses with genetic markers.
TopoLens: Building a cyberGIS community data service for enhancing the usability of high-resolution National Topographic datasets
Geospatial data, often embedded with geographic references, are important to many application and science domains, and represent a major type of big data. The increased volume and diversity of geospatial data have caused serious usability issues for researchers in various scientific domains, which call for innovative cyberGIS solutions. To address these issues, this paper describes a cyberGIS community data service framework to facilitate geospatial big data access, processing, and sharing based on a hybrid supercomputer architecture. Through the collaboration between the CyberGIS Center at the University of Illinois at Urbana-Champaign (UIUC) and the U.S. Geological Survey (USGS), a community data service for accessing, customizing, and sharing digital elevation model (DEM) and its derived datasets from the 10-meter national elevation dataset, namely TopoLens, is created to demonstrate the workflow integration of geospatial big data sources, computation, analysis needed for customizing the original dataset for end user needs, and a friendly online user environment. TopoLens provides online access to precomputed and on-demand computed high-resolution elevation data by exploiting the ROGER supercomputer. The usability of this prototype service has been acknowledged in community evaluation.
Data dictionary and formatting standard for dissemination of geotechnical data
A pilot system for archiving and web dissemination of geotechnical data collected and stored by various agencies is currently under development. Part of the scope of this project, sponsored by the Consortium of Organizations for Strong-Motion Observation Systems (COSMOS) and by the Pacific Earthquake Engineering Research Center (PEER) Lifelines Program, is the development of a data dictionary and formatting standard. This paper presents the data model along with the basic structure of the data dictionary tables for this pilot system.
Fabricating data: How substituting values for nondetects can ruin results, and what can be done about it
The most commonly used method in environmental chemistry to deal with values below detection limits is to substitute a fraction of the detection limit for each nondetect. Two decades of research has shown that this fabrication of values produces poor estimates of statistics, and commonly obscures patterns and trends in the data. Papers using substitution may conclude that significant differences, correlations, and regression relationships do not exist, when in fact they do. The reverse may also be true. Fortunately, good alternative methods for dealing with nondetects already exist, and are summarized here with references to original sources. Substituting values for nondetects should be used rarely, and should generally be considered unacceptable in scientific research. There are better ways.
Global change and threats to waterbirds in the Asian flyways
Avian migration represents one of nature’s most spectacular phenomena, providing critical ecological services and acting as an indicator of environmental change. Flyways are geographical ranges through which migrating bird species move, and the flyway concept has been used to identify countries that share species to highlight their collective responsibility for conservation. Of the nine recognized global waterbird flyways, the Central Asian Flyway (CAF) and the East Asian–Australasian Flyway (EAAF) are among the most important areas in Eurasia, supporting millions of waterbirds across a vast network of habitats. We proposed this special issue in Avian Research entitled “Global Change and Threats to Waterbirds in the Asian Flyways” to synthesize recent findings from 12 papers covering a wide range of topics. The CAF stretches from the Siberian tundra through Central Asia including Mongolia, the Qinghai-Tibet Plateau, the Trans-Caucasus, and the Himalayas, extending south to the Indian subcontinent and parts of the Middle East. The EAAF spans eastern Siberia and Alaska to Southeast Asia, Australia, and New Zealand, including China, Japan, the Korean Peninsula, and the Russian Far East. These two flyways include 47 countries comprising critical wetlands, river basins, and coastal areas, which are vital breeding, stopover, and wintering grounds for waterbirds. Seasonal migration in these flyways is fundamentally influenced by climate and weather conditions, land cover dynamics, and anthropogenic activities, and contributes significantly to ecological processes such as pest control, nutrient cycling, and organism dispersal. However, migratory waterbirds and their habitats are undergoing enormous challenges. Changes in climate, habitat availability and connectivity, and human activities are altering the phenology, distribution, population dynamics, and health of the migratory bird populations. As migratory waterbirds travel across international boundaries, understanding their movements and responses to environmental change requires collaborative, cross-border research efforts that promote knowledge sharing and interdisciplinary approaches.
Measurement of flow under ice covers in North America
A substantial proportion of natural streams in the United States and Canada are affected by ice cover during the winter. To substantiate the currently used procedures for measuring streamflow during the winter, the U.S. Geological Survey (USGS) and Water Survey of Canada (WSC) began independent, coordinated programs for research and development related to the measurement of streamflow under an ice cover. Detailed measurements of vertical velocity profiles under ice covers in field settings were collected by each agency in accordance with standardized guidelines. The data were then compiled into a joint database. This paper presents a description of the two measurement programs, describes the structure and format of the joint database, and provides preliminary summaries of the data. Ongoing research efforts by the USGS and WSC are described briefly to give examples of the use of the joint database.
The Nitrogen Footprint Tool network: A multi-institution program to reduce nitrogen pollution
Anthropogenic sources of reactive nitrogen have local and global impacts on air and water quality and detrimental effects on human and ecosystem health. This paper uses the nitrogen footprint tool (NFT) to determine the amount of nitrogen (N) released as a result of institutional consumption. The sectors accounted for include food (consumption and upstream production), energy, transportation, fertilizer, research animals, and agricultural research. The NFT is then used for scenario analysis to manage and track reductions, which are driven by the consumption behaviors of both the institution itself and its constituent individuals. In this paper, the first seven completed institution nitrogen footprint results are presented. The institution NFT network aims to develop footprints for many institutions to encourage widespread upper-level management strategies that will create significant reductions in reactive nitrogen released to the environment. Energy use and food purchases are the two largest sectors contributing to institution nitrogen footprints. Ongoing efforts by institutions to reduce greenhouse gas emissions also help to reduce the nitrogen footprint, but the impact of food production on nitrogen pollution has not been directly addressed by the higher-ed sustainability community. The NFT Network found that institutions could reduce their nitrogen footprints by optimizing food purchasing to reduce consumption of animal products and minimize food waste, as well as reducing dependence on fossil fuels for energy.
Interbasin groundwater flow in south central Nevada: A further comment on the discussion between Davisson et. al.. [1999a, 1999b] and Thomas [1999]
In their response to the comments by Thomas [1999], Davisson et al. [1999a] dismiss a large set of potentiometric measurements pertinent to an understanding of the hydrogeology of Yucca and Frenchman Flats in southcentral Nevada. This commentary is submitted to demonstrate, first, that their dismissal of this data set is unfounded and, second, that these potentiometric data call into question the central thesis of the original paper by Davisson et al. [1999b].
Atlas of relations between climatic parameters and distributions of important trees and shrubs in North America
This atlas explores the continental-scale relations between the geographic ranges of woody plant species and climate in North America. A 25-km equal-area grid of modern climatic and bioclimatic parameters was constructed from instrumental weather records. The geographic distributions of selected tree and shrub species were digitized, and the presence or absence of each species was determined for each cell on the 25-km grid, thus providing a basis for comparing climatic data and species distributions. The relations between climate and plant distributions are explored in graphical and tabular form. The results of this effort are primarily intended for use in biogeographic, paleoclimatic, and global-change research.
The value of closed-circuit rebreathers for biological research
Closed-circuit rebreathers have been used for underwater biological research since the late 1960s, but have only started to gain broader application within scientific diving organizations within the past two decades. Rebreathers offer certain specific advantages for such research, especially for research involving behavior and surveys that depend on unobtrusive observers or for a stealthy approach to wildlife for capture and tagging, research that benefits from extended durations underwater, and operations requiring access to relatively deep (>50 m) environments (especially in remote locations). Although many institutions have been slow to adopt rebreather technology within their diving programs, recent developments in rebreather technology that improve safety, standardize training requirements, and reduce costs of equipment and maintenance, will likely result in a trend of increasing utilization of rebreathers for underwater biological research.
Origins and philosophy of building a temporal database to examine human transformation processes
The U.S. Geological Survey (USGS), in partnership with the University of Maryland Baltimore County, is using historical maps and satellite images to map human-induced land transformations for the Baltimore-Washington metropolitan area. This work builds on an earlier effort that documented the historical urban development for the San Francisco Bay area. That effort used a geographic information system to compile a database that provided a visual and historical perspective of the urban growth experienced in the Bay area between 1850 and 1990. Historical overviews of urban development can be used to provide insights into the future. The Bay area work was inspired by the desire to draw upon the USGS's rich 100-year topographic map, and 20-year Landsat satellite data archives. A methodology was developed to combine the information from a variety of sources into an integrated, multi-scale, and multi-resolution dataset. Temporal urban mapping is used to examine past landscapes by incorporating historic maps, census statistics, and commerce records to generate a progressive geo-referenced representation of the past changes in the region. Contemporary analysis focuses on the use of remotely sensed data, existing digital land use data, digital census information, and a variety of Earth science infrastructure data, such as Digital Line Graphs, Digital Elevation Models, and key ancillary demographic information. The resulting database of temporal urban demographic changes provides an ideal source of test data and information for both urban geographers and global change research scientists.
Global environmental databases from CEOS agencies
The Committee on Earth Observation Satellites (CEOS) is an international organization charged with coordinating international civil spaceborne missions designed to observe and study planet Earth. Comprising 44 space agencies and other national and international organizations, CEOS is recognized as the major international forum for the coordination of Earth observation satellite programs and for the interaction of these programs with users of satellite data worldwide. CEOS was created in 1984 in response to a recommendation from the Economic Summit of Industrialized Nations Working Group on Growth, Technology, and Employment’s Panel of Experts on Satellite Remote Sensing. This group recognized the multidisciplinary nature of satellite Earth observation and the value of coordination across all proposed missions. The CEOS members collect, maintain, apply, and make available data from space missions that encompass the atmospheric, terrestrial, and oceanographic fields. Collectively, these members possess petabytes of Earth observation data critical to understanding the Earth environment. Uses include monitoring oil slicks, evaluating human-induced changes to the atmosphere, determining mineral exploration areas, assessing the environmental effects of volcanic eruptions, measuring the growth of urban areas, determining where landscapes have changed because of urban growth trends, improving the efficiency of fishing as a world food stock, monitoring pest infestation, managing crop production, predicting climate and weather, and numerous other applications vital to industry, national infrastructures, and the world as a whole. The vast amount of satellite obtained, environmental data the CEOS members possess represents a fertile resource for researchers worldwide to exploit.
UZIG USGS research: Advances through interdisciplinary interaction
B Because vadose zone research relates to diverse disciplines, applications, and modes of research, collaboration across traditional operational and topical divisions is especially likely to yield major advances in understanding. The Unsaturated Zone Interest Group (UZIG) is an informal organization sponsored by the USGS to encourage and support interdisciplinary collaboration in vadose or unsaturated zone hydrologic research across organizational boundaries. It includes both USGS and non-USGS scientists. Formed in 1987, the UZIG operates to promote communication, especially through periodic meetings with presentations, discussions, and field trips. The 10th meeting of the UZIG at Los Alamos, NM, in August 2007 was jointly sponsored by the USGS and Los Alamos National Laboratory. Presentations at this meeting served as the initial basis for selecting papers for this special section of Vadose Zone Journal , the purpose of which is to present noteworthy cutting-edge unsaturated zone research promoted by, facilitated by, or presented in connection with the UZIG.