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Mineralogy and composition of the oceanic mantle

The mineralogy of the oceanic basalt source region is examined by testing whether a peridotite mineralogy can yield observed whole-rock and olivine compositions from (1) the Hawaiian Islands, our type example of a mantle plume, and (2) the Siqueiros Transform, which provides primitive samples of normal mid-ocean ridge basalt. New olivine compositional data from phase 2 of the Hawaii Scientific Drilling Project (HSDP2) show that higher Ni-in-olivine at the Hawaiian Islands is due to higher temperatures ( T ) of melt generation and processing (by c . 300°C) related to the Hawaiian mantle plume. D Ni is low at high T , so parental Hawaiian basalts are enriched in NiO. When Hawaiian (picritic) parental magmas are transported to shallow depths, olivine precipitation occurs at lower temperatures, where D Ni is high, leading to high Ni-in-olivine. Similarly, variations in Mn and Fe/Mn ratios in olivines are explained by contrasts in the temperatures of magma processing. Using the most mafic rocks to delimit Siqueiros and Hawaiian Co and Ni contents in parental magmas and mantle source compositions also shows that both suites can be derived from natural peridotites, but are inconsistent with partial melting of natural pyroxenites. Whole-rock compositions at Hawaii and Siqueiros are also matched by partial melting experiments conducted on peridotite bulk compositions. Hawaiian whole-rocks have elevated FeO contents compared with Siqueiros, which can be explained if Hawaiian parental magmas are generated from peridotite at 4–5 GPa, in contrast to pressures of slightly greater than 1 GPa for melt generation at Siqueiros; these pressures are consistent with olivine thermometry, as described in an earlier paper. SiO 2 -enriched Koolau compositions are reproduced if high-Fe Hawaiian parental magmas re-equilibrate at 1–1·5 GPa. Peridotite partial melts from experimental studies also reproduce the CaO and Al 2 O 3 contents of Hawaiian (and Siqueiros) whole-rocks. Hawaiian magmas have TiO 2 contents, however, that are enriched compared with melts from natural peridotites and magmas derived from the Siqueiros depleted mantle, and consequently may require an enriched source. TiO 2 is not the only element that is enriched relative to melts of natural peridotites. Moderately incompatible elements, such as Ti, Zr, Hf, Y, and Eu, and compatible elements, such as Yb and Lu, are all enriched at the Hawaiian Islands. Such enrichments can be explained by adding 5–10% mid-ocean ridge basalt (crust) to depleted mantle; when the major element composition of such a mixture is recast into mineral components, the result is a fertile peridotite mineralogy.

Hawai'i

Quantifying resilience

The biosphere is under unprecedented pressure, reflected in rapid changes in our global ecological, social, technological and economic systems. In many cases, ecological and social systems can adapt to these changes over time, but when a critical threshold is surpassed, a system under stress can undergo catastrophic change and reorganize into a different state. The concept of resilience, introduced more than 40 years ago in the ecological sciences, captures the behaviour of systems that can occur in alternative states. The original definition of resilience forwarded by Holling ( 1973 ) is still the most useful. It defines resilience as the amount of disturbance that a system can withstand before it shifts into an alternative stable state. The idea of alternative stable states has clear and profound implications for ecological management. Coral reefs, for example, are high-diversity systems that provide key ecosystem services such as fisheries and coastal protection. Human impacts are causing significant, ongoing reef degradation, and many reefs have shifted from coral- to algal-dominated states in response to anthropogenic pressures such as elevated water temperatures and overfishing. Understanding and differentiating between the factors that help maintain reefs in coral-dominated states vs. those that facilitate a shift to an undesired algal-dominated state is a critical step towards sound management and conservation of these, and other, important social–ecological systems. Resilience has gained popularity among both academicians and laypeople, as a term meant to describe a systems’ ability to withstand disturbance. Resilience has become a buzzword in the last decade, as shown by its increasing appearance in calls for research proposals and scientific citation data bases. The term resilience has in many cases lost the clarity of the original definition and in fact is frequently used in a manner in direct opposition to the original definition. Many current uses of the concept are loose and incorrect. The term is becoming increasingly used in a normative sense (Brand & Jax 2007 ), as if resilience were a desirable quality of systems. However, even systems in highly undesirable states, such as macro-algae dominated reefs, or city cores in poverty traps, may be highly resilient, which is to say they withstand attempts to transform them into different (desirable) states. Operationalizing the concept of resilience for application and management has been difficult. Misuse of the term can have significant negative impacts, because resilience is being used to help guide responses to natural disasters and to assess the sustainability of ecosystems and urban systems and has been driving international research priorities. Resilience has been argued to be a basic emergent property of systems, a process or a rate. We focus on the original concept as described by Holling, which is that of an emergent system property; when a system is in a desirable state and managers wish to enhance resilience, or when the system is in an undesirable state and managers wish to erode resilience and foster a transformation to an alternative state. Fostering or eroding resilience is a process. When a system is perturbed but resilience is not exceeded, then the recovery can be measured as a rate. Several frameworks to operationalize resilience have been proposed. A decade ago, a special feature focused on quantifying resilience was published in the journal Ecosystems (Carpenter, Westley & Turner 2005 ). The approach there was towards identifying surrogates of resilience, but few of the papers proposed quantifiable metrics. Consequently, many ecological resilience frameworks remain vague and difficult to quantify, a problem that this special feature aims to address. However, considerable progress has been made during the last decade (e.g. Pope, Allen & Angeler 2014 ). Although some argue that resilience is best kept as an unquantifiable, vague concept (Quinlan et al . 2016 ), to be useful for managers, there must be concrete guidance regarding how and what to manage and how to measure success (Garmestani, Allen & Benson 2013 ; Spears et al . 2015 ). Ideas such as ‘resilience thinking’ have utility in helping stakeholders conceptualize their systems, but provide little guidance on how to make resilience useful for ecosystem management, other than suggesting an ambiguous, Goldilocks approach of being just right (e.g. diverse, but not too diverse; connected, but not too connected). Here, we clarify some prominent resilience terms and concepts, introduce and synthesize the papers in this special feature on quantifying resilience and identify core unanswered questions related to resilience.

Journal of Applied Ecology

Effect of Drought on Streamflow and Stream-Water Quality in Colorado, July through September 2002

During 2002, Colorado experienced the State's worst drought since 1977. In 2003, the U.S. Geological Survey entered into cooperative agreement with the Colorado Department of Public Health and Environment to evaluate the general effects of drought on the water quality of streams in Colorado during summer 2002 by analyzing a water-quality data set obtained during summer 2002 in cooperation with a variety of State and local governments. Water samples were collected at 148 stream sites in Colorado and were measured or analyzed for field properties, major ions, nutrients, organic carbon, bacteria, and dissolved and total recoverable metals. Mean annual streamflow was analyzed at 134 sites in Colorado, and mean summer (July-September) streamflow for 2002 was determined for 146 sites for water years 1978-2002. Mean annual streamflow for 2002 had an average percentile of 29.4 and mean summer streamflow for 2002 had an average percentile of 7.6 relative to 1978-2002. These results indicate that streamflow in Colorado was substantially less than median streamflow for the period and that the effect of drought on streamflow was greater during summer 2002 than during water year 2002 (October 1, 2001, through September 30, 2002). Few measured constituent concentrations or values were elevated or depressed on a widespread basis during summer 2002. Specific conductance was elevated (in the upper quartile relative to historical data) in five of the seven basins that had sufficient data for characterization, indicating that specific conductance likely was affected by drought in those basins. Chloride concentrations were elevated in three of five basins with sufficient data and indicate that chloride concentration generally was affected by drought in those basins. Sulfate concentration was elevated in four of six basins with sufficient data. The widespread elevation of specific conductance and concentrations of chloride and sulfate indicates that salinity generally was affected by drought in Colorado streams during July-September 2002, likely because streamflow at most sites was dominated by base flow of ground water, which usually has substantially greater salinity compared to runoff from precipitation. Total-recoverable iron and manganese concentrations were depressed (in the lower quartile of historical data) in the Arkansas River Basin, which likely was due to reduced land-surface washoff of sediment containing oxyhydroxides of these metals. Of the 246 water samples collected at 148 sites during the summer of 2002, constituents in 115 exceeded Colorado water-quality standards. Constituents that exceeded water-quality standards were pH (all 9.0 standard unit exceedances; 9 samples), chloride (1 sample), sulfate (9 samples), dissolved ammonia (10 samples), dissolved nitrite nitrogen (3 samples), E. coli (Escherichia coli) bacteria (34 samples, 20 in Arkansas River Basin), fecal-coliform bacteria (18 samples, all in Arkansas River Basin), dissolved copper (1 sample), dissolved iron (3 samples), total-recoverable iron (3 samples), dissolved manganese (13 samples), dissolved selenium (10 samples), and dissolved zinc (1 sample). Of these 115 exceedances, historical data were sufficient to conclude that 21 probably were affected by drought, that 39 probably were not affected by drought, and that 55 were of indeterminate nature. Specific conductance indicates that the San Juan River Basin (average percentile 95.2) experienced the greatest effects of drought on water quality during summer 2002 compared to other basins in Colorado, followed by the Upper Colorado (90.0) and Dolores River (85.7) Basins. The South Platte River Basin (70.9) experienced the least effect of drought, and the Yampa and White River Basin group (73.7) had the second smallest effect. The Gunnison River (82.1) and Arkansas River (81.2) Basins had intermediate drought effects. The Rio Grande had insufficient data to rank the relative effect of drought on salinity.

Scientific Investigations Report

Recent scientific contributions by the U.S. Geological Survey in the San Francisco Bay and Sacramento–San Joaquin Delta Estuary

Introduction The San Francisco Bay and Sacramento–San Joaquin Delta Estuary (hereafter, Bay-Delta) is the largest estuary on the West Coast of the United States. The Bay-Delta covers more than 1,600 square miles and drains a watershed of more than 75,000 square miles, which is greater than 40 percent of California. The region surrounding the Bay-Delta is home to about 10 million people, and its habitats (fig. 1) support more than 800 plant and animal species. The waterways of the Bay-Delta are the central hub of California’s extensive freshwater delivery system, supplying water to more than 27 million Californians and 4 million acres of farmland in the Central Valley. The U.S. Geological Survey (USGS) is the primary science agency of the U.S. Department of the Interior, providing a broad range of Earth, water, biological, and mapping data and expertise to inform natural resource management across the country. This fact sheet focuses on research conducted by the USGS in the Bay-Delta region, mostly within the past 5 years. The fact sheet is organized across five major themes: water flow and water quality, fish and wildlife, wetland restoration, invasive species, and hazards. In each of these areas, the USGS works closely with Federal, State, and local agencies; academia; and non-governmental organizations to provide objective, evidence-based science. The data and knowledge gained from USGS research and monitoring are publicly available and are routinely used by agencies, including the U.S. Bureau of Reclamation, U.S. Army Corps of Engineers, U.S. Fish and Wildlife Service, California Department of Water Resources, California Department of Fish and Wildlife, California State Water Resources Control Board, Delta Stewardship Council, and many additional organizations and stakeholders to inform management of the Bay-Delta region and its resources.

California

Developing flood-inundation maps for Johnson Creek, Portland, Oregon

Digital flood-inundation maps were created for a 12.9‑mile reach of Johnson Creek by the U.S. Geological Survey (USGS). The flood-inundation maps depict estimates of water depth and areal extent of flooding from the mouth of Johnson Creek to just upstream of Southeast 174th Avenue in Portland, Oregon. Each flood-inundation map is based on a specific water level and associated streamflow at the USGS streamgage, Johnson Creek at Sycamore, Oregon (14211500), which is located near the upstream boundary of the maps. The maps produced by the USGS, and the forecasted flood hydrographs produced by National Weather Service River Forecast Center can be accessed through the USGS Flood Inundation Mapper Web site ( http://wimcloud.usgs.gov/apps/FIM/FloodInundationMapper.html ) . Water-surface elevations were computed for Johnson Creek using a combined one-dimensional and two‑dimensional unsteady hydraulic flow model. The model was calibrated using data collected from the flood of December 2015 (including the calculated streamflows at two USGS streamgages on Johnson Creek) and validated with data from the flood of January 2009. Results were typically within 0.6 foot (ft) of recorded or measured water-surface elevations from the December 2015 flood, and within 0.8 ft from the January 2009 flood. Output from the hydraulic model was used to create eight flood inundation maps ranging in stage from 9 to 16 ft. Boundary condition hydrographs were identical in shape to those from the December 2015 flood event, but were scaled up or down to produce the amount of streamflow corresponding to a specific water-surface elevation at the Sycamore streamgage (14211500). Sensitivity analyses using other hydrograph shapes, and a version of the model in which the peak flow is maintained for an extended period of time, showed minimal variation, except for overbank areas near the Foster Floodplain Natural Area. Simulated water-surface profiles were combined with light detection and ranging (lidar) data collected in 2014 to delineate water-surface extents for each of the eight modeled stages. The availability of flood-inundation maps in conjunction with real-time data from the USGS streamgages along Johnson Creek and forecasted hydrographs from the National Weather Service Northwest River Forecast Center will provide residents of the watershed and emergency management personnel with valuable information that may aid in flood response, including potential evacuations, road closures, and mitigation efforts. In addition, these maps may be used for post-flood recovery efforts.

Oregon

Hydrogeologic characteristics of Hourglass and New Years Cave Lakes at Jewel Cave National Monument, South Dakota, from water-level and water-chemistry data, 2015–21

Jewel Cave National Monument is in the western Black Hills of South Dakota and contains an extensive cave network, including various subterranean water bodies (cave lakes) that are believed to represent the regionally important Madison aquifer. Recent investigations have sought to improve understanding of hydrogeologic characteristics of cave lakes in Jewel Cave. The U.S. Geological Survey, in cooperation with the National Park Service, collected water-level and water-chemistry data within and near Jewel Cave to better understand groundwater interactions in Jewel Cave and to evaluate recharge characteristics of cave lakes. Continuous water-level data were collected at two cave lakes (Hourglass and New Years Lakes) from 2018 to 2021, and discrete measurements were collected by National Park Service staff from 2015 to 2021. Water samples were collected from one stream, one rain collector, three springs, and two cave lakes. The approach for this study included comparing water-level data collected from two cave lakes to historical climate data and using multivariate statistical analyses to evaluate water samples collected during this study and from previous investigations. This study builds on interpretations from previous investigations that collected similar datasets and performed similar analyses. Hydrographs of Hourglass and News Years Lakes from 2015 to 2021 demonstrated the variability of groundwater levels in Jewel Cave in response to dry and wet climate conditions. Hourglass Lake displayed small (up to 4.8 feet), gradual water-level changes, whereas New Years Lake displayed relatively large (up to at least 27.5 feet) and rapid water-level changes. Hourglass and New Years Lakes are about 0.4 mile apart at the land surface, and the water-level elevation between the lakes varied from 61 to 93.5 feet from 2016 to 2021. The proximity and relatively small elevation difference of Hourglass and New Years Lakes indicated different recharge sources and (or) mechanisms were responsible for hydrograph dissimilarities. Water-level changes at Hourglass Lake were similar to water-level changes at a well completed in the Madison aquifer about 9 miles south of Jewel Cave National Monument, which indicated Hourglass Lake may be recharged similar to the regional Madison aquifer along outcrops north of Jewel Cave. New Years Lake displayed almost no similarities to the well completed in the Madison aquifer—indicating a more direct connection to local recharge rather than solely from outcrops recharging the regional Madison aquifer. Results from multivariate statistical analyses of water-chemistry data were used to evaluate recharge observations from water-level data. The water chemistry of Hourglass Lake indicated its water was chemically more similar to precipitation than other groundwater sites sampled. A conceptual karst recharge model indicated that the dominant recharge source to Hourglass Lake was diffuse allogenic recharge from vertical movement of infiltrated precipitation through vertical or near-vertical fractures that extend through the Minnelusa Formation and unsaturated zone of the Madison Limestone. The water chemistry of New Years Lake was chemically similar to Hell Canyon Creek about 0.2 mile from New Years Lake at the land surface. Streamflow loss zones (concentrated allogenic recharge) along Hell Canyon Creek have not been mapped, but their presence in the Jewel Cave area has been speculated by previous investigations. A fault observed in the cave ceiling above New Years Lake by National Park Service staff could provide a natural conduit for direct recharge from Hell Canyon Creek to New Years Lake if the fault is extensive. Additional water-chemistry and water-level data, as well as streamflow data upstream and downstream of the potential streamflow loss zone along Hell Canyon Creek, are needed to prove the presence of this loss zone and discern further correlations between streamflow and water levels in New Years Lake. Observations from previous investigations and this study indicated recharge to Jewel Cave is complex and occurs on various timescales that are affected temporally by precipitation patterns and spatially by hydrologic connection with the overlying Minnelusa aquifer of the Minnelusa Formation.

South Dakota

Monitoring status and trends in genetic diversity for the Convention on Biological Diversity: An ongoing assessment of genetic indicators in nine countries

Recent scientific evidence shows that genetic diversity must be maintained, managed, and monitored to protect biodiversity and nature's contributions to people. Three genetic diversity indicators, two of which do not require DNA-based assessment, have been proposed for reporting to the Convention on Biological Diversity and other conservation and policy initiatives. These indicators allow an approximation of the status and trends of genetic diversity to inform policy, using existing demographic and geographic information. Application of these indicators has been initiated and here we describe ongoing efforts in calculating these indicators with examples. We specifically describe a project underway to apply these indicators in nine countries, provide example calculations, address concerns of policy makers and implementation challenges, and describe a roadmap for further development and deployment, incorporating feedback from the broader community. We also present guidance documents and data collection tools for calculating indicators. We demonstrate that Parties can successfully and cost-effectively report these genetic diversity indicators with existing biodiversity observation data, and, in doing so, better conserve the Earth's biodiversity.

Conservation Letters

Global geologic map of Europa

Discovered by Galileo Galilei more than 400 years ago and imaged in detail by the Voyager 2 Galileo spacecraft, Jupiter’s icy moon Europa has been a source of intrigue. A range of science investigations indicate that it contains the key ingredients for habitability, notably energy, chemistry, and liquid water. Europa’s surface is geologically complex and, based on the dearth of impact craters, interpreted to be as young as ~60 Ma. The array of geologic features that characterize the surface include extensive ridged plains, regions of broad disruption termed chaotic terrain, long, quasi-linear ridges that span thousands of kilometers, and bands as much as 60 kilometers wide and that extend 100s of kilometers. These features, along with other geophysical measurements, indicate the presence of a global briny liquid water ocean beneath the ice shell. It was not until the arrival of the Galileo spacecraft in 1995 that the true nature and level of complexity of the surface was revealed. Although image data returned by Galileo provided insight into the structure of a variety of regions, the entire satellite has yet to be observed at a regional scale (less than 250 meters per pixel) and the detailed geologic nature of much of its surface remains a mystery. Establishing the global context of the distribution and timing of Europan geologic units forms a basis to understand regional and local scale processes, serves as a tool for the planning of future missions, and most of all is essential to gaining insight into the potential habitability of this icy world.

Scientific Investigations Map

Land subsidence along the California Aqueduct in west-central San Joaquin Valley, California, 2003–10

Extensive groundwater withdrawal from the unconsolidated deposits in the San Joaquin Valley caused widespread aquifer-system compaction and resultant land subsidence from 1926 to 1970—locally exceeding 8.5 meters. The importation of surface water beginning in the early 1950s through the Delta-Mendota Canal and in the early 1970s through the California Aqueduct resulted in decreased groundwater pumping, recovery of water levels, and a reduced rate of compaction in some areas of the San Joaquin Valley. However, drought conditions during 1976–77, 1987–92, and drought conditions and operational reductions in surface-water deliveries during 2007–10 decreased surface-water availability, causing pumping to increase, water levels to decline, and renewed compaction. Land subsidence from this compaction has reduced freeboard and flow capacity of the California Aqueduct, Delta-Mendota Canal, and other canals that deliver irrigation water and transport floodwater. The U.S. Geological Survey, in cooperation with the California Department of Water Resources, assessed more recent land subsidence near a 145-kilometer reach of the California Aqueduct in the west-central part of the San Joaquin Valley as part of an effort to minimize future subsidence-related damages to the California Aqueduct. The location, magnitude, and stress regime of land-surface deformation during 2003–10 were determined by using data and analyses associated with extensometers, Global Positioning System surveys, Interferometric Synthetic Aperture Radar, spirit-leveling surveys, and groundwater wells. Comparison of continuous Global Positioning System, shallow-extensometer, and groundwater-level data indicated that most of the compaction in this area took place beneath the Corcoran Clay, the primary regional confining unit. The integration of measurements strengthens confidence in individual measurement methods and provides the information at spatial and temporal scales that water managers need to design and implement groundwater sustainability plans in compliance with California’s Sustainable Groundwater Management Act. Measurements of land-surface deformation during 2003–10 indicated that the parts of the California Aqueduct closest to the Coast Ranges in the west-central part of the San Joaquin Valley were fairly stable or minimally subsiding on an annual basis; some areas show seasonal periods of subsidence and uplift that resulted in little or no longer-term elevation loss. Many groundwater levels in these areas did not reach historical lows during 2003–10, indicating that deformation nearest the Coast Ranges was likely primarily elastic. Land-surface deformation measurements indicated that some parts of the California Aqueduct that traverse farther from the Coast Ranges toward the valley center subsided. Some parts of the California Aqueduct subsided locally, but generally the California Aqueduct is within part of a 12,000-square-kilometer area affected by 25 millimeters or more of subsidence during 2008–10, with maxima in Madera County, south of the town of El Nido near the San Joaquin River and the Eastside Bypass (540 millimeters), and in Tulare County, west of the town of Pixley (345 millimeters). Interferometric Synthetic Aperture Radar-derived subsidence maps for various periods during 2003–10 show that the area of maximum active subsidence (that is, the largest rates of subsidence) shifted from its historical (1926–70) location southwest of the town of Mendota to these areas nearer the valley center. Calculations indicated that the subsidence rate doubled in 2008 in parts of the study area. Water levels declined during 2007–10 in many shallow and deep wells in the most rapidly subsiding areas, where water levels in many deep wells reached their historical lows, indicating that subsidence measured during this period was largely inelastic. Continued groundwater-level and land-subsidence monitoring in the San Joaquin Valley is important because (1) operational- and drought-related reductions in surface-water deliveries since 1976 have resulted in increased groundwater pumping and associated water-level declines and land subsidence, (2) land use and associated pumping continue to change throughout the valley, and (3) subsidence management is stipulated in the Sustainable Groundwater Management Act. The availability of surface water remains uncertain; even during record-setting precipitation years, such as 2010–11, water deliveries fell short of requests and groundwater pumping was required to meet the irrigation demand. In some areas, the infrastructure is not available to supply surface water, and groundwater is the only source of water. Because of the expected continued demand for water and the limitations and uncertainty of surface-water supplies, groundwater pumping and associated land subsidence remains a concern. Spatially detailed information on land subsidence is needed to minimize future subsidence-related damages to the California Aqueduct and other infrastructure in the San Joaquin Valley, as well as alterations to natural resources such as stream gradients, water depths, and water temperatures. The integration of data on land-surface elevation, subsurface deformation, and water levels—particularly continuous measurements—enables the analysis of aquifer-system response to groundwater pumping, which in turn, enables estimation of the preconsolidation head and calculation of aquifer-system storage properties. This information can be used to improve numerical model simulations of groundwater flow and aquifer-system compaction and allow for consideration of land subsidence in the evaluation of water resource management alternatives and compliance with the Sustainable Groundwater Management Act.

California

Effects of noise from oil and gas development on ungulates and small mammals—A science synthesis to inform National Environmental Policy Act analyses

The U.S. Geological Survey is working with Federal land management agencies to develop a series of science syntheses to support environmental effects analyses that agencies conduct to comply with the National Environmental Policy Act (NEPA). This report synthesizes science information about the potential effects of noise from oil and gas development on North American ungulates and small mammals, including rodents and leporids. We conducted a structured search of published scientific literature to find information about noise levels produced during oil and gas development, methods for analyzing sound propagation, the effects of noise on ungulates and small mammals, and measures to reduce noise emissions. We organized the sections of this synthesis to align with standard elements of NEPA analyses. We found that oil and gas development is a common source of human-caused noise on public lands and includes noise sources such as heavy construction and drilling machinery, long-term production machinery, truck traffic, and aircraft. Common techniques for predicting potential noise include field data collection using a sound level meter, inference from previously published data, and sound propagation modeling. A substantial body of research shows that human-caused noise can affect wildlife health and behavior, with variation in sensitivity to noise among species. Studies have shown consistent, detectable effects of noise on ungulates, but the amount of literature on ungulates is very small, and additional research could improve our understanding of differences in effects among species, seasons, and individual indicators of fitness. Several species of small mammals are dependent on audible signals for predator detection and communication, and noise has been shown to affect their vigilance and foraging behavior. However, other studies have documented no effects to rodents in noisy areas, and the effects of noise on small mammals may differ by species and study system. Techniques suggested in the literature for reducing noise emissions include sound barriers, seasonal and daily timing restrictions, traffic control measures, and siting infrastructure to take advantage of natural sound barriers. Public land managers can use this report by incorporating it by reference in NEPA documentation, as supplemental information, or as a general reference for literature about the effects of noise from oil and gas development on ungulates and small mammals.

Scientific Investigations Report

Status of and changes in water quality monitored for the Idaho statewide surface-water-quality network, 1989—2002

The Idaho statewide surface-water-quality monitoring network consists of 56 sites that have been monitored from 1989 through 2002 to provide data to document status and changes in the quality of Idaho streams. Sampling at 33 sites has covered a wide range of flows and seasons that describe water-quality variations representing both natural conditions and human influences. Targeting additional high- or low-flow sampling would better describe conditions at 20 sites during hydrologic extremes. At the three spring site types, sampling covered the range of flow conditions from 1989 through 2002 well. However, high flows at these sites since 1989 were lower than historical high flows as a result of declining ground-water levels in the Snake River Plain. Summertime stream temperatures at 45 sites commonly exceeded 19 and 22 degrees Celsius, the Idaho maximum daily mean and daily maximum criteria, respectively, for the protection of coldwater aquatic life. Criteria exceedances in stream basins with minimal development suggest that such high temperatures may occur naturally in many Idaho streams. Suspended-sediment concentrations were generally higher in southern Idaho than in central and northern Idaho, and network data suggest that the turbidity criteria are most likely to be exceeded at sites in southern Idaho and other sections of the Columbia Plateaus geomorphic province. This is probably because this province has more fine-grained soils that are subject to erosion and disturbance by land uses than the Northern Rocky Mountains province of northern and central Idaho has. Although erodable soils are likely a cause of elevated turbidities, suspended-sediment concentrations were not strongly correlated with turbidities. Dissolved-solids and hardness concentrations were strongly correlated. This is probably because the limestones present in some basins are more soluble than the igneous rocks that predominate in others. Low hardness in streams of northern Idaho, where watersheds are underlain by resistant igneous rocks, enhances the toxicity of some trace elements to aquatic life in these streams. Only a few measurements of dissolved-oxygen concentrations at six sites were less than 6.0 milligrams per liter, the Idaho minimum criterion for protection of aquatic organisms. High supersaturations of dissolved oxygen at four sites suggest excessive photosynthetic activity by algal communities. Nighttime monitoring would help determine whether dissolved-oxygen concentrations at these sites might fall below the Idaho criterion. Data from four sites suggest that dissolved-oxygen concentrations may have decreased over time. The pH at 15 sites sometimes fell outside the range specified (6.5-9.0) for the protection of aquatic organisms in Idaho streams. Values exceeded 9.0 at 10 sites, probably because of excessive algal photosynthetic activity in waters where carbonate rocks are present. Values were sometimes less than 6.5 at five sites in areas of mountain bedrock geology where pH is likely to be naturally low. Mining activities also may contribute to low pH at some of these sites. Inorganic nitrogen and total phosphorus concentrations commonly exceeded those considered sufficient for supporting excess algal production (0.3 and 0.1 milligrams per liter, respectively). Data from a few sites suggest that nitrogen and(or) phosphorus concentrations might be changing over time. Low concentrations of nitrogen and phosphorus at six sites, most representing forested basins, might make them good candidates as reference sites that represent naturally occurring nutrient concentrations. Trace elements examined for this report were cadmium, copper, lead, mercury, selenium, and zinc. In water, many trace-element concentrations were below the minimum analytical reporting levels. Concentrations of cadmium, copper, lead, and zinc generally were highest in mined and other mineral-rich basins in northern Idaho. Concentrations of mercury were

Idaho

Synthesizing and analyzing long-term monitoring data: A greater sage-grouse case study

Long-term monitoring of natural resources is imperative for increasing the understanding of ecosystem processes, services, and how to manage those ecosystems to maintain or improve function. Challenges with using these data may occur because methods of monitoring changed over time, multiple organizations collect and manage data differently, and monetary resources fluctuate, affecting many aspects of data. Because many species respond to changes in habitat conditions and predator-prey relationships across different spatial scales that span management boundaries, greater efforts for collaborating are essential. We demonstrate the challenges and methods for standardizing greater sage-grouse ( Centrocercus urophasianus ) long-term monitoring data across the species range in the western United States to inform population modeling needs identified by the Western Association of Fish and Wildlife Agencies. We used automated and repeatable methods of standardizing data via custom open-source software ( grsg_lekdb ) to improve the scientific integrity of future sage-grouse population assessments within and among states. Data standardization included reconciling uses of different terminology and expunging unusable data, resulting in the removal of 26% of data records due to database insertion errors and modifications to >1 million values to correct formatting and typing errors. Our approaches maximized the inclusion of usable data and identified data that could inform detection probabilities, population trends, and monitoring guidelines. Using sage-grouse databases as an example, we identified the importance of data management and how quality assurance and quality control measures can improve the usefulness of these data for future research needs. Our methods of using informatics and concluding recommendations can support similar endeavors of flora and fauna monitoring programs, whether those efforts are to use existing data or support new monitoring programs.

Ecological Informatics

Fort Collins Science Center-Fiscal year 2009 science accomplishments

Public land and natural resource managers in the United States are confronted with increasingly complex decisions that have important ramifications for both ecological and human systems. The scientists and technical professionals at the U.S. Geological Survey Fort Collins Science Center?many of whom are at the forefront of their fields?possess a unique blend of ecological, socioeconomic, and technological expertise. Because of this diverse talent, Fort Collins Science Center staff are able to apply a systems approach to investigating complicated ecological problems in a way that helps answer critical management questions. In addition, the Fort Collins Science Center has a long record of working closely with the academic community through cooperative agreements and other collaborations. The Fort Collins Science Center is deeply engaged with other U.S. Geological Survey science centers and partners throughout the Department of the Interior. As a regular practice, we incorporate the expertise of these partners in providing a full complement of ?the right people? to effectively tackle the multifaceted research problems of today's resource-management world. In Fiscal Year 2009, the Fort Collins Science Center's scientific and technical professionals continued research vital to Department of the Interior's science and management needs. Fort Collins Science Center work also supported the science needs of other Federal and State agencies as well as non-government organizations. Specifically, Fort Collins Science Center research and technical assistance focused on client and partner needs and goals in the areas of biological information management and delivery, enterprise information, fisheries and aquatic systems, invasive species, status and trends of biological resources (including human dimensions), terrestrial ecosystems, and wildlife resources. In the process, Fort Collins Science Center science addressed natural-science information needs identified in the U.S. Geological Survey Science Strategy (http://www.usgs.gov/science_strategy), including understanding and predicting change in ecosystems, climate variability and change, energy development and land management, the role of the environment and wildlife in human health, freshwater ecosystems, data integration, and evolving technologies. Several science projects were expanded in Fiscal Year 2009 to meet these evolving needs.

Open-File Report

Water and the South Florida environment

Ecological problems are a major concern to Florida as well as to the Nation. National attention was focused on these problems in September 1968, when the Port Authority of Dade County began to con- struct a jetport for supersonic aircraft on a 39-square-mile tract 6 miles north of Everglades National Park and on the east edge of the Big Cypress Swamp. Conservation groups and citizens raised questions as to the effects of a regional jetport and the attendant satellite growth on the water resources and biological communities of the National Park. The Department of the Interior began studies to investigate the situation. One study, Leopold (1969), reported on the unfavorable ecological effects of the attendant satellite growth. Then Secretary of the Interior, Walter J. Hickel, directed the U.S. Geological Survey to study the water resources of the Big Cypress to determine which parts of the Big Cypress contribute the major part of the water necessary to maintain adequate water supplies for Everglades National Park. This was done in a report by Klein and others (1970). At about the same time, the Departments of interior and Transportation, the State of Florida, and the Dade County Port Authority con-curred in assigning to the Secretary of the Interior certain responsibilities for planning, developing, and coordinating an ecological study of south Florida. A primary objective of the ecological study is to provide information that will assist in the formulation of land-use policy consistent with the protection of the environment of Everglades National Park, the adjacent estuaries, and the public water supplies. The part of the investigation describing the surface-water and ground-water resources of south Florida was assigned to the Geological Survey. The quantity and quality of surface water and ground water and their interrelation with estuarine and marine waters are here considered. Also considered are the problems, present or future, related to the hydrologic environment that involve human, animal, and plant life. Changes taking place, apparent trends, and projections for the future are also considered, as well as alternatives for water management. The Geological Survey effort began in January 1971, when aerial photography and selected qualitative hydrologic data were obtained. However, most of the information upon which this report Is based was obtained by the Geological Survey in cooperative programs with several local, State, and Federal agencies since about 1940. The long-term support of the U.S. Army Corps of Engineers, the National Park Service, U.S. Navy, Florida Department of Natural Resources, Central and Southern Florida Flood Control District, Dade, Broward, Palm Beach and Collier Counties, Miami and Miami Beach, Ft. Lauderdale, Naples and others in the collection of data is gratefully acknowledged. A prolonged drought throughout south Florida from September 1970 to May 1971 accentuated the importance and timeliness of the study. The drought brought about a readvance of sea-water intrusion in many coastal areas, which necessitated restrictions on water use. The effect of drought on the regional water supply, continued population growth and increased water demands, and deterioration of the water quality in many of the canals and waterways of the urban areas accentuated the need for improved water management and land-use planning. As a result of the water crisis, the Governor of Florida called a special conference in September 1971. The conference, attended by foremost scientific and government personnel, proposed creation of an agency that would develop and implement comprehensive land and water-use plans for south Florida that would minimize environmental degradation.

Florida

Logs and scarp data from a paleoseismic investigation of the Surprise Valley fault zone, Modoc County, California

This report contains field and laboratory data from a paleoseismic study of the Surprise Valley fault zone near Cedarville, California. The 85-km-long Surprise Valley fault zone forms the western active margin of the Basin and Range province in northeastern California. The down-to-the-east normal fault is marked by Holocene fault scarps along most of its length, from Fort Bidwell on the north to near the southern end of Surprise Valley. We studied the central section of the fault to determine ages of paleoearthquakes and to better constrain late Quaternary slip rates, which we hope to compare to deformation rates derived from a recently established geodetic network in the region (Hammond and Thatcher, 2005; 2007). We excavated a trench in June 2005 across a prominent fault scarp on pluvial Lake Surprise deltaic sediments near the mouth of Cooks Canyon, 4 km north of Cedarville. This site was chosen because of the presence of a well-preserved fault scarp and its development on lacustrine deposits thought to be suitable for luminescence dating. We also logged a natural exposure of the fault in similar deltaic sediments near the mouth of Steamboat Canyon, 11 km south of Cedarville, to better understand the along-strike extent of surface ruptures. The purpose of this report is to present photomosaics, trench, drill hole, and stream exposure logs; scarp profiles; and fault slip, tephrochronologic, radiocarbon, luminescence, and unit description data obtained during this investigation. We do not attempt to use the data presented herein to construct a paleoseismic history of this part of the Surprise Valley fault zone; that history will be the subject of a future report.

California

Summary of Hydrologic Data for the Tuscarawas River Basin, Ohio, with an Annotated Bibliography

The Tuscarawas River Basin drains approximately 2,600 square miles in eastern Ohio and is home to 600,000 residents that rely on the water resources of the basin. This report summarizes the hydrologic conditions in the basin, describes over 400 publications related to the many factors that affect the groundwater and surface-water resources, and presents new water-quality information and a new water-level map designed to provide decisionmakers with information to assist in future data-collection efforts and land-use decisions. The Tuscarawas River is 130 miles long, and the drainage basin includes four major tributary basins and seven man-made reservoirs designed primarily for flood control. The basin lies within two physiographic provinces-the Glaciated Appalachian Plateaus to the north and the unglaciated Allegheny Plateaus to the south. Topography, soil types, surficial geology, and the overall hydrology of the basin were strongly affected by glaciation, which covered the northern one-third of the basin over 10,000 years ago. Within the glaciated region, unconsolidated glacial deposits, which are predominantly clay-rich till, overlie gently sloping Pennsylvanian-age sandstone, limestone, coal, and shale bedrock. Stream valleys throughout the basin are filled with sands and gravels derived from glacial outwash and alluvial processes. The southern two-thirds of the basin is characterized by similar bedrock units; however, till is absent and topographic relief is greater. The primary aquifers are sand- and gravel-filled valleys and sandstone bedrock. These sands and gravels are part of a complex system of aquifers that may exceed 400 feet in thickness and fill glacially incised valleys. Sand and gravel aquifers in this basin are capable of supporting sustained well yields exceeding 1,000 gallons per minute. Underlying sandstones within 300 feet of the surface also provide substantial quantities of water, with typical well yields of up to 100 gallons per minute. Although hydraulic connection between the sandstone bedrock and the sands and gravels in valleys is likely, it has not been assessed in the Tuscarawas River Basin. In 2001, the major land uses in the basin were approximately 40 percent forested, 39 percent agricultural, and 17 percent urban/residential. Between 1992 and 2001, forested land use decreased by 2 percent with correspondingly small increases in agricultural and urban land uses, but from 1980 to 2005, the 13-county area that encompasses the basin experienced a 7.1-percent increase in population. Higher population density and percentages of urban land use were typical of the northern, headwaters parts of the basin in and around the cities of Akron, Canton, and New Philadelphia; the southern area was rural. The basin receives approximately 38 inches of precipitation per year that exits the basin through evapotranspiration, streamflow, and groundwater withdrawals. Recharge to groundwater is estimated to range from 6 to 10 inches per year across the basin. In 2000, approximately 89 percent of the 116 million gallons per day of water used in the basin came from groundwater sources, whereas 11 percent came from surface-water sources. To examine directions of groundwater flow in the basin, a new dataset of water-level contours was developed by the Ohio Department of Natural Resources. The contours were compiled on a map that shows that groundwater flows from the uplands towards the valleys and that the water-level surface mimics surface topography; however, there are areas where data were too sparse to adequately map the water-level surface. Additionally, little is known about deep groundwater that may be flowing into the basin from outside the basin and groundwater interactions with surface-water bodies. Many previous reports as well as new data collected as part of this study show that water quality in the streams and aquifers in the Tuscarawas River Basin has been degraded by urban, suburban, and rural

Scientific Investigations Report

Estimates of tracer-based piston-flow ages of groundwater from selected sites: National Water-Quality Assessment Program, 2006-2010

Piston-flow age dates were interpreted from measured concentrations of environmental tracers from 812 National Water-Quality Assessment (NAWQA) Program groundwater sites from 27 Study Units across the United States. The tracers of interest include chlorofluorocarbons (CFCs), sulfur hexafluoride (SF 6 ), and tritium/helium-3 ( 3 H/ 3 He). Tracer data compiled for this analysis were collected from 2006 to 2010 from groundwater wells in NAWQA studies, including: * Land-Use Studies (LUS, shallow wells, usually monitoring wells, located in recharge areas under dominant land-use settings), * Major-Aquifer Studies (MAS, wells, usually domestic supply wells, located in principal aquifers and representing the shallow drinking water supply), * Flow System Studies (FSS, networks of clustered wells located along a flowpath extending from a recharge zone to a discharge zone, preferably a shallow stream) associated with Land-Use Studies, and * Reference wells (wells representing groundwater minimally impacted by anthropogenic activities) also associated with Land-Use Studies. Tracer data were evaluated using documented methods and are presented as aqueous concentrations, equivalent atmospheric concentrations (for CFCs and SF 6 ), and tracer-based piston-flow ages. Selected ancillary data, such as redox data, well-construction data, and major dissolved-gas (N 2 , O 2 , Ar, CH 4 , and CO 2 ) data, also are presented. Recharge temperature was inferred using climate data (approximated by mean annual air temperature plus 1°C [MAAT +1°C]) as well as major dissolved-gas data (N 2 -Ar-based) where available. The N 2 -Ar-based temperatures showed significantly more variation than the climate-based data, as well as the effects of denitrification and degassing resulting from reducing conditions. The N 2 -Ar-based temperatures were colder than the climate-based temperatures in networks where recharge was limited to the winter months when evapotranspiration was reduced. The tracer-based piston-flow ages compiled in this report are provided as a consistent means of reporting the tracer data. The tracer-based piston-flow ages may provide an initial interpretation of age in cases in which mixing is minimal and may aid in developing a basic conceptualization of groundwater age in an aquifer. These interpretations are based on the assumption that tracer transport is by advection only and that no mixing occurs. In addition, it is assumed that other uncertainties are minimized, including tracer degradation, sorption, contamination, or fractionation, and that terrigenic (natural) sources of tracers, and spatially variable atmospheric tracer concentrations are constrained.

Scientific Investigations Report

Advancing global marine biogeography research with open-source GIS software and cloud-computing

Across many scientific domains, the ability to aggregate disparate datasets enables more meaningful global analyses. Within marine biology, the Census of Marine Life served as the catalyst for such a global data aggregation effort. Under the Census framework, the Ocean Biogeographic Information System was established to coordinate an unprecedented aggregation of global marine biogeography data. The OBIS data system now contains 31.3 million observations, freely accessible through a geospatial portal. The challenges of storing, querying, disseminating, and mapping a global data collection of this complexity and magnitude are significant. In the face of declining performance and expanding feature requests, a redevelopment of the OBIS data system was undertaken. Following an Open Source philosophy, the OBIS technology stack was rebuilt using PostgreSQL, PostGIS, GeoServer and OpenLayers. This approach has markedly improved the performance and online user experience while maintaining a standards-compliant and interoperable framework. Due to the distributed nature of the project and increasing needs for storage, scalability and deployment flexibility, the entire hardware and software stack was built on a Cloud Computing environment. The flexibility of the platform, combined with the power of the application stack, enabled rapid re-development of the OBIS infrastructure, and ensured complete standards-compliance.

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