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At least 397 records · Page 22Linked to original sources
USGS2006

Instream flow characterization of Upper Salmon River basin streams, central Idaho, 2005

Anadromous fish populations in the Columbia River Basin have plummeted in the last 100 years. This severe decline led to Federal listing of Chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) stocks as endangered or threatened under the Endangered Species Act (ESA) in the 1990s. Historically, the upper Salmon River Basin (upstream of the confluence with the Pahsimeroi River) in Idaho provided migration corridors and significant habitat for these ESA-listed species, in addition to the ESA-listed bull trout (Salvelinus confluentus). Human development has modified the original streamflow conditions in many streams in the upper Salmon River Basin. Summer streamflow modifications resulting from irrigation practices, have directly affected quantity and quality of fish habitat and also have affected migration and (or) access to suitable spawning and rearing habitat for these fish. As a result of these ESA listings and Action 149 of the Federal Columbia River Power System Biological Opinion of 2000, the Bureau of Reclamation was tasked to conduct streamflow characterization studies in the upper Salmon River Basin to clearly define habitat requirements for effective species management and habitat restoration. These studies include collection of habitat and streamflow information for the Physical Habitat Simulation System (PHABSIM) model, a widely applied method to determine relations between habitat and discharge requirements for various fish species and life stages. Model simulation results can be used by resource managers to guide habitat restoration efforts by evaluating potential fish habitat and passage improvements by increasing or decreasing streamflow. In 2005, instream flow characterization studies were completed on Big Boulder, Challis, Bear, Mill, and Morgan Creeks. Continuous streamflow data were recorded upstream of all diversions on Big Boulder. Instantaneous measurements of discharge were also made at selected sites. In addition, natural summer streamflows were estimated for each study site using regional regression equations. This report describes PHABSIM modeling results for bull trout, Chinook salmon, and steelhead trout during summer streamflows. Habitat/discharge relations were summarized for adult and spawning life stages at each study site. In addition, streamflow needs for riffle dwelling invertebrate taxa (Ephemeroptera, Plecoptera, and Trichoptera) are presented. Adult fish passage and discharge relations were evaluated at specific transects that were identified as potential low-streamflow passage barriers at each study site. Continuous summer water temperature data for selected study sites were summarized and compared with Idaho Water Quality Standards and various water temperature requirements of targeted fish species. Results of these habitat studies can be used to prioritize and direct cost-effective actions to improve fish habitat for ESA-listed anadromous and native fish species in the basin. These actions may include acquiring water during critical low-flow periods by leasing or modifying irrigation delivery systems to minimize out-of-stream diversions.

Idaho↗
USGS2011

Crims Island-Restoration and monitoring of juvenile salmon rearing habitat in the Columbia River Estuary, Oregon, 2004-10

Under the 2004 Biological Opinion for operation of the Federal Columbia River Power System released by the National Marine Fisheries Service, the U.S. Army Corps of Engineers (USACE), the Bonneville Power Administration (BPA), and the Bureau of Reclamation (Reclamation) were directed to restore more than 4,047 hectares (10,000 acres) of tidal marsh in the Columbia River estuary by 2010. Restoration of Crims Island near Longview, Washington, restored 38.1 hectares of marsh and swamp in the tidal freshwater portion of the lower Columbia River. The goal of the restoration was to improve habitat for juveniles of Endangered Species Act (ESA)-listed salmon stocks and ESA-listed Columbian white-tailed deer. The U.S. Geological Survey (USGS) monitored and evaluated the fisheries and aquatic resources at Crims Island in 2004 prior to restoration (pre-restoration), which began in August 2004, and then post-restoration from 2006 to 2009. This report summarizes pre- and post-restoration monitoring data used by the USGS to evaluate project success. We evaluated project success by examining the interaction between juvenile salmon and a suite of broader ecological measures including sediments, plants, and invertebrates and their response to large-scale habitat alteration. The restoration action at Crims Island from August 2004 to September 2005 was to excavate a 0.6-meter layer of soil and dig channels in the interior of the island to remove reed canary grass and increase habitat area and tidal exchange. The excavation created 34.4 hectares of tidal emergent marsh where none previously existed and 3.7 hectares of intertidal and subtidal channels. Cattle that had grazed the island for more than 50 years were relocated. Soil excavated from the site was deposited in upland areas next to the tidal marsh to establish an upland forest. Excavation deepened and widened an existing T-shaped channel to increase tidal flow to the interior of the island. The western arm of the existing 'T-channel' was extended westward and connected to Bradbury Slough to create a second outlet to the main river. New intertidal channels were constructed from the existing 'T-channel' and tidal mudflats became inundated at high tide to increase rearing habitat for juvenile salmonids. The restoration action resulted in a 95-percent increase in available juvenile salmon rearing habitat. We collected juvenile salmon and other fishes at Crims Island and a nearby reference site using beach seines and fyke nets annually from March through August during all years. Benthic invertebrates were collected with sediment corers and drift invertebrates were collected with neuston nets. Juvenile salmon stomach contents were sampled using lavage. Vegetation and sediments characteristics were surveyed and we conducted a topographic/bathymetric survey using a RTK (real time kinematic) GPS (global positioning system). The fish assemblage at Crims Island, composed primarily of threespine stickleback (Gasterosteus aculeatus), non-native banded killifish (Fundulus diaphanus), peamouth chub (Mylocheilus caurinus), subyearling Chinook salmon (Oncorhynchus tshawytscha) (hereinafter referred to as subyearlings), and small numbers of juvenile chum salmon (Oncorhynchus keta), did not differ appreciably pre- and post-restoration. Subyearlings were the primary salmonid collected and were seasonally abundant from April through May during all years. The abundance of juvenile salmon declined seasonally as water temperature exceeded 20 degrees C in the Reference site by mid-June; however, subyearlings persisted at the Mainstem site and in subtidal channels of the Restoration site through the summer in water temperatures exceeding 22 degrees C. Residence times of subyearlings in Crims Island backwaters generally were short consisting of one or two tidal cycles. Median residence time was longer in the Restoration site than in the Reference site pre- and post-restoration. Small (mean = 55.7 millimeters) subyea

Scientific Investigations Report↗
USGS2023

Assessing arthropod diversity metrics derived from stream environmental DNA: Spatiotemporal variation and paired comparisons with manual sampling

Background Benthic invertebrate (BI) surveys have been widely used to characterize freshwater environmental quality but can be challenging to implement at desired spatial scales and frequency. Environmental DNA (eDNA) allows an alternative BI survey approach, one that can potentially be implemented more rapidly and cheaply than traditional methods. Methods We evaluated eDNA analogs of BI metrics in the Potomac River watershed of the eastern United States. We first compared arthropod diversity detected with primers targeting mitochondrial 16S (mt16S) and cytochrome c oxidase 1 (cox1 or COI) loci to that detected by manual surveys conducted in parallel. We then evaluated spatial and temporal variation in arthropod diversity metrics with repeated sampling in three focal parks. We also investigated technical factors such as filter type used to capture eDNA and PCR inhibition treatment. Results Our results indicate that genus-level assessment of eDNA compositions is achievable at both loci with modest technical noise, although database gaps remain substantial at mt16S for regional taxa. While the specific taxa identified by eDNA did not strongly overlap with paired manual surveys, some metrics derived from eDNA compositions were rank-correlated with previously derived biological indices of environmental quality. Repeated sampling revealed statistical differences between high- and low-quality sites based on taxonomic diversity, functional diversity, and tolerance scores weighted by taxon proportions in transformed counts. We conclude that eDNA compositions are efficient and informative of stream condition. Further development and validation of scoring schemes analogous to commonly used biological indices should allow increased application of the approach to management needs.

PeerJ↗
USGS2012

Time scales of change in chemical and biological parameters after engineered levee breaches adjacent to Upper Klamath and Agency Lakes, Oregon

Eight sampling trips were coordinated after engineered levee breaches hydrologically reconnected both Upper Klamath Lake and Agency Lake, Oregon, to adjacent wetlands. The reconnection, by a series of explosive blasts, was coordinated by The Nature Conservancy to reclaim wetlands that had for approximately seven decades been leveed for crop production. Sets of nonmetallic porewater profilers (U.S. Patent 8,051,727 B1; November 8, 2011; http://www.uspto.gov/web/patents/patog/ week45/OG/html/1372-2/US08051727-20111108.html.) were deployed during these trips in November 2007, June 2008, May 2009, July 2009, May 2010, August 2010, June 2011, and July 2011 (table 1). Deployments temporally spanned the annual cyanophyte bloom of Aphanizomenon flos-aquae and spatially involved three lake and four wetland sites. Spatial and temporal variation in solute benthic flux was determined by the field team, using the profilers, over an approximately 4-year period beginning 3 days after the levee breaches. The highest flux to the water column of dissolved organic carbon (DOC) was detected in the newly flooded wetland, contrasting negative or insignificant DOC fluxes at adjacent lake sites. Over the multiyear study, DOC benthic fluxes dissipated in the reconnected wetlands, converging to values similar to those for established wetlands and to the adjacent lake (table 2). In contrast to DOC, benthic sources of soluble reactive phosphorus, ammonium, dissolved iron and manganese from within the reconnected wetlands were consistently elevated (that is, significant in magnitude relative to riverine and established-wetland sources) indicating a multi-year time scale for certain chemical changes after the levee breaches (table 2). Colonization of the reconnected wetlands by aquatic benthic invertebrates during the study trended toward the assemblages in established wetlands, providing further evidence of a multiyear transition of this area to permanent aquatic habitat (table 3). Both the lake and wetland benthic environments substantively contribute to macro- and micronutrients in the water column. Wetland areas undergoing restoration, and those being used for water storage, function very differently relatively to the established wetland within the Upper Klamath Lake National Wildlife Refuge, adjacent Upper Klamath Lake. Developing long-term management strategies for water quality in the Upper Klamath Basin requires recognition of the multi-year time scales associated with restoring wetlands that provide natural, seasonal ecosystem function and services.

Oregon↗
USGS2006

The relationship between pH and community structure of invertebrates in streams of the Shenandoah National Park, Virginia

1. A replicated natural experiment was used to assess the influence of pH and low alkalinity on abundance and richness of invertebrate families in streams draining catchments that receive acid deposition. Individual streams were used as the unit of replication, allowing conclusions to refer to a class of streams rather than to particular streams. 2. We also controlled for several factors other than pH and alkalinity, including flow and temperature, that are recognized as determinants of invertebrate distribution. Samples were from indigenous rocks, standardized for size, surface area, and geology. 3. Repeated measures analyses of variance (ANOVA) revealed that invertebrate abundance and richness were significantly lower at pH 5.8 than at pH 7.1 for the total community. Thirty per cent of the forty‐seven families exhibited significantly lower abundance at pH 5.8; thirteen families were absent at pH 5.8. Differences were greatest for Ephemeroptera: species richness was significantly lower at pH 5.8, and 71% of the twenty‐four species were either absent (seven) or found in reduced abundance (ten) in the acidic streams. 4. Stream alkalinity is projected to continue to decrease with continued acid deposition in the Shenandoah National Park. Concurrent decreases in pH may lead to the absence or continued numerical decline of certain Ephemeroptera species in streams that acidify to less than pH 6.0 and/or 50μEql −1 alkalinity.

Virginia↗
USGS2005

Assessing mercury exposure and effects to American dippers in headwater streams near mining sites

To evaluate mercury (Hg) exposure and possible adverse effects of Hg on American dipper ( Cinclus mexicanus ) reproduction, we collected eggs and nestling feathers and the larval/nymph form of three Orders of aquatic macroinvertebrates (Ephemeroptera, Plecoptera and Trichoptera = EPT) important in their diet from three major headwater tributaries of the upper Willamette River, Oregon in 2002. The Coast Fork Willamette River is contaminated with Hg due to historical cinnabar (HgS) mining at the Black Butte Mine; the Row River is affected by past gold-mining operations located within the Bohemia Mining District, where Hg was used in the amalgamation process to recover gold; and the Middle Fork Willamette River is the reference area with no known mining. Methyl mercury (MeHg) concentrations (geometric mean) in composite EPT larvae (111.9 ng/g dry weight [dw] or 19.8 ng/g wet weight [ww]), dipper eggs (38.5 ng/g ww) and nestling feathers (1158 ng/g ww) collected from the Coast Fork Willamette were significantly higher than MeHg concentrations in EPT and dipper samples from other streams. Total mercury (THg) concentrations in surface sediments along the same Hg-impacted streams were investigated by others in 1999 (Row River tributaries) and 2002 (Coast Fork). The reported sediment THg concentrations paralleled our biological findings. Dipper breeding territories at higher elevations had fewer second clutches; however, dipper reproductive success along all streams (including the lower elevation and most Hg-contaminated Coast Fork), was judged excellent compared to other studies reviewed. Furthermore, MeHg concentrations in EPT samples from this study were well below dietary concentrations in other aquatic bird species, such as loons and ducks, reported to cause Hg-related reproductive problems. Our data suggest that either dipper feathers or EPT composites used to project MeHg concentrations in dipper feathers (with biomagnification factor of 10–20×) may be used, but with caution, to screen headwater streams for potential Hg-related effects on dippers. When actual feather concentrations or projected feather concentrations are equal to or lower than concentrations reported for the Coast Fork, dippers are expected to reproduce well (assuming adequate prey and suitable nest sites). When Hg concentrations are substantially higher, more detailed investigations may be required. Birds feeding almost exclusively on fish (e.g., osprey [ Pandion haliaetus ]) and usually found further downstream from the headwaters would not be adequately represented by dippers given the higher MeHg concentrations in fish resulting from biomagnification, compared to lower trophic level invertebrates.

Oregon↗
USGS2010

Assessing macroinvertebrate biodiversity in freshwater ecosystems: Advances and challenges in dna-based approaches

Assessing the biodiversity of macroinvertebrate fauna in freshwater ecosystems is an essential component of both basic ecological inquiry and applied ecological assessments. Aspects of taxonomic diversity and composition in freshwater communities are widely used to quantify water quality and measure the efficacy of remediation and restoration efforts. The accuracy and precision of biodiversity assessments based on standard morphological identifications are often limited by taxonomic resolution and sample size. Morphologically based identifications are laborious and costly, significantly constraining the sample sizes that can be processed. We suggest that the development of an assay platform based on DNA signatures will increase the precision and ease of quantifying biodiversity in freshwater ecosystems. Advances in this area will be particularly relevant for benthic and planktonic invertebrates, which are often monitored by regulatory agencies. Adopting a genetic assessment platform will alleviate some of the current limitations to biodiversity assessment strategies. We discuss the benefits and challenges associated with DNA-based assessments and the methods that are currently available. As recent advances in microarray and next-generation sequencing technologies will facilitate a transition to DNA-based assessment approaches, future research efforts should focus on methods for data collection, assay platform development, establishing linkages between DNA signatures and well-resolved taxonomies, and bioinformatics. ?? 2010 by The University of Chicago Press.

The Quarterly Review of Biology↗
USGS2022

New-generation pesticides are prevalent in California's Central Coast streams

Pesticides are widely recognized as important biological stressors in streams, especially in heavily developed urban and agricultural areas like the Central California Coast region. We assessed occurrence and potential toxicity of pesticides in small streams in the region using two analytical methods: a broad-spectrum (223 compounds) method in use since 2012 and a newly developed method for 30 additional new-generation fungicides and insecticides. At least one pesticide compound was identified in 83 of the 85 streams sampled. About one-half (48%) of the 253 pesticides measured were detected at least once and 27 were detected in 10% or more of samples. Three of the top 4, and 6 of the top 10 most frequently detected compounds (chlorantraniliprole, dinotefuran, boscalid, thiamethoxam, clothianidin and the fluopicolide degradate 2,6-dichlorobenzamide) were analyzed by the new method. Pesticide mixtures were common, with two or more pesticide compounds detected in 81% of samples and 10 or more in 32% of samples. The pesticide count at a site was relatively consistent over the 6-week study. Four sites with mixed land-use in the lower basin (<5 km from the sampling site) tended to have the highest pesticide counts and the highest concentrations. Potential toxicity (assessed by comparison to benchmarks) to invertebrates was much more common than potential toxicity to fish or plants and was associated with a wide array of insecticides. The common occurrence of new-generation pesticides highlights the need to continuously update analytical methods to keep pace with changing pesticide use for a fuller assessment of pesticide occurrence and effects on the environment.

California↗
USGS1989

Prairie basin wetlands of the Dakotas: a community profile

This description of prairie basin wetlands of the Dakotas is part of a series of community profiles on ecologically important wetlands of national significance. The shallow wetlands of the Dakotas form the bulk of the portion of the Prairie Pothole Region lying within the United States. This region is famous as the producer of at least half of North America's waterfowl and an unknown, but large, proportion of other prairie-dwelling marsh and aquatic birds.The wetlands described here lie in relatively small, shallow basins that vary greatly in their ability to maintain surface water, and in their water chemistry, which varies from fresh to hypersaline. These wetlands occur in a wide variety of hydrological settings, in an area where annual and seasonal precipitation varies greatly in form and amount. Thus the presence of surface water in these wetlands is largely unpredictable. Superimposed on these phenomena are the effects of a variety of land uses, including pasture, cultivation, mechanical forage removal, idle conditions and burning. All those factors greatly affect the plant and animal communities found in these basins.This profile covers lacustrine and palustrine basins with temporarily flooded, seasonally flooded, and semipermanently flooded water regimes. Basins with these water regimes compose about 90% of the basins in the Prairie Pothole Region of the Dakotas. This profile outlines the wetland subsystems, classes and subclasses that occur in these basins, and provides a useful reference to their geologic, climatic, hydrologic, and pedologic setting.Detailed information on the biotic environment of the wetlands dealt with in this profile will be useful to scientists and resource managers. Special recognition is paid to the macrophyte and invertebrate communities, which have dynamic qualities found in few other of the world's wetland ecosystems.The most noteworthy animal inhabitants of these basins are waterfowl, which are a resource of international concern. Because of the importance of this resource, much research on the habitat use and feeding ecology of breeding waterfowl has been conducted in the region. These topics receive special attention in this profile.The Prairie Pothole Region is a major world supplier of cereal grains. Consequently, wetlands in the region are often drained for crop production or otherwise cropped when water conditions permit. These practices degrade the value of wetlands for most species of wildlife and conflict with the aims of conservationists. The subject of human uses and impacts to prairie wetlands is thus an important part of this profile.

Biological Report↗
USGS2020

Diversity of diatoms, benthic macroinvertebrates, and fish varies in response to different environmental correlates in Arctic rivers across North America

Climate change poses a significant threat to Arctic freshwater biodiversity, but impacts depend upon the strength of organism response to climate‐related drivers. Currently, there is insufficient knowledge about Arctic freshwater biodiversity patterns to guide assessment, prediction, and management of biodiversity change. As part of the Circumpolar Biodiversity Monitoring Program's first freshwater assessment, we evaluated diversity of diatoms, benthic macroinvertebrates, and fish in North American Arctic rivers. Alpha diversity was assessed in relation to temperature, water chemistry, bedrock geology, and glaciation history to identify important environmental correlates. Biotic composition was compared among groups to evaluate response to environmental gradients. Macroinvertebrate α‐diversity declined strongly with increasing latitude from 48°N to 82°N, whereas diatom and fish diversity peaked around 70°N without a clear latitudinal decline. Macroinvertebrate diversity was significantly positively related to air temperature. Diatom diversity was related to bedrock geology and temperature, whereas fish diversity was related to glaciation history. Fish and macroinvertebrate assemblages differed between sites in western Canada, where invertebrate composition was more variable, and Alaska, where fish composition was more variable. In sites with both diatom and macroinvertebrate data, diatom composition was distinct in Alaska, where richness was highest in former glacial refugia. Macroinvertebrate composition was distinct in lowest‐latitude eastern and high‐latitude western Canadian sites where temperature was highest. Temperature, precipitation, geology, calcium, and substrate size were important environmental correlates for diatoms and macroinvertebrates, although the relative importance of each correlate differed. Diatom taxa were most strongly associated with water chemistry, whereas benthic invertebrate composition related most strongly to precipitation and temperature. This large‐scale study provides the most substantial integration and analysis of river diatom, macroinvertebrate, and fish data from the North American Arctic to date. Findings suggest that macroinvertebrates will show the strongest response to climate‐related shifts in temperature, whereas diatoms and fish are more likely to respond to climate‐induced shifts in nutrients and hydraulic connectivity. However, significant gaps in data coverage limited our ability to reliably evaluate spatial patterns and detect change. These gaps could be reduced by improving collaborative efforts between the U.S.A. and Canada to harmonise future monitoring.

Arctic↗
USGS2007

A low diversity, seasonal tropical landscape dominated by conifers and peltasperms: Early Permian Abo Formation, New Mexico

Walchian conifers (Walchia piniformis Sternberg, 1825) and peltasperms similar to Supaia thinnfeldioides White and cf. Supaia anomala White dominate floodplain deposits of a narrow stratigraphic interval of the middle Abo Formation, Lower Permian of central New Mexico. The plant fossils occur in thinly bedded units up to two meters thick, consisting of coarse siltstone to very fine sandstone with clay partings. Bedding is primarily tabular, thin, and bears rare ripple marks and trough cross beds. Bedding surfaces display mud cracks, raindrop imprints, horizontal and vertical burrows of invertebrates, and footprints of terrestrial vertebrates. These features indicate intermittent and generally unchannelized stream flow, with repeated exposure to air. Channels appear to have cannibalized one another on a slowly subsiding coastal plain. Conifers are dominant at three collecting sites and at three others Supaia dominates. Although each of these genera occurs in assemblages dominated by the other, there are no truly co-dominant assemblages. This pattern suggests alternative explanations. Landscapes could have consisted of a small-scale vegetational patchwork dominated almost monospecifically in any one patch, meaning that these plants could have coexisted across the landscape. On the other hand, conifer and supaioid dominance could have been temporally distinct, occurring during different episodes of sedimentation; although in the field there are no noticeable sedimentological differences between conifer-dominated and Supaia-dominated channel deposits, they may represent slightly different climatic regimes. The considerable morphological differences between conifers and Supaia suggest that the floristic patterns are not a taphonomic effect of the loss of a significant part of the original biodiversity. In general, the climate under which this vegetation developed appears to have been relatively warm and arid, based on the geology (pervasive red color [oxidation], calcrete in paleosols, and abundant mud cracks evidencing ephemeral flow in streams) and biology (low floristic diversity, xeromorphic plant physiognomies). ?? 2006 Elsevier B.V. All rights reserved.

Review of Palaeobotany and Palynology↗
USGS2008

Are hotspots of evolutionary potential adequately protected in southern California?

Reserves are often designed to protect rare habitats, or "typical" exemplars of ecoregions and geomorphic provinces. This approach focuses on current patterns of organismal and ecosystem-level biodiversity, but typically ignores the evolutionary processes that control the gain and loss of biodiversity at these and other levels (e.g., genetic, ecological). In order to include evolutionary processes in conservation planning efforts, their spatial components must first be identified and mapped. We describe a GIS-based approach for explicitly mapping patterns of genetic divergence and diversity for multiple species (a "multi-species genetic landscape"). Using this approach, we analyzed mitochondrial DNA datasets from 21 vertebrate and invertebrate species in southern California to identify areas with common phylogeographic breaks and high intrapopulation diversity. The result is an evolutionary framework for southern California within which patterns of genetic diversity can be analyzed in the context of historical processes, future evolutionary potential and current reserve design. Our multi-species genetic landscapes pinpoint six hotspots where interpopulation genetic divergence is consistently high, five evolutionary hotspots within which genetic connectivity is high, and three hotspots where intrapopulation genetic diversity is high. These 14 hotspots can be grouped into eight geographic areas, of which five largely are unprotected at this time. The multi-species genetic landscape approach may provide an avenue to readily incorporate measures of evolutionary process into GIS-based systematic conservation assessment and land-use planning.

Biological Conservation↗
USGS1973

A review of benthic faunal surveys in San Francisco Bay

During the past 60 years, considerable effort has been expended in studies of the relations of the biotic community and physicochemical characteristics of San Francisco Bay water. In very recent years these studies have emphasized the relations between the 'state of health' of bottom-living invertebrates (the benthos) and the levels of pollutants in the bay. Benthic organisms, generally sessile, are unable to escape deleterious environmental changes, and they reflect these changes in alterations of normal species composition of assemblages and species abundance. Data that expands understanding of these relations in urbanized areas such as San Francisco Bay are critical. Because of the implications of such data in control of water quality, the U.S. Geological Survey undertook a review of the results and major conclusions of San Francisco Bay benthic surveys. The size and species composition of faunal assemblages are largely controlled by the salinity of the water, the texture of the bottom sediments, and locally by wastes discharged into the bay. Efforts to describe the structure and function of benthic communities of the bay and to quantify the effects of waste discharge on them have been hampered by inconsistent and often faulty sampling methodology and species identification. Studies made show a lack of information on the normal life processes of the organisms concerned. The diversity index (a mathematical expression of the number of kinds of organisms present at a location), commonly used to describe the 'health' of the benthic community, has been employed without regard for the need for standardizing methodology and species identifications or for understanding natural biological processes that affect such mathematical indices. There are few reliable quantitative data on the distribution of benthic organisms in San Francisco Bay with which future assessments of the 'health' of the benthic community might be compared. Methods for study of the benthos must be standardized, identifications of species verified by trained taxonomists, and new field and laboratory studies undertaken before we can expect to obtain an accurate description of the benthic fauna and its relations with the environment.

Circular↗
USGS2019

Eradication of two non-native cichlid fishes in Miami, Florida (USA)

The proliferation of non-native fishes in Florida is a serious problem, and new species continue to be introduced to the state. Fishes in the Family Cichlidae have been especially successful colonizers of south Florida freshwater habitats. Herein we report a multi-agency effort to eradicate two non-native cichlid fishes in Miami, Florida (Bay Snook Petenia splendida and Blue Mbuna Labeotropheus fuelleborni). These fishes were removed before they were observed in the extensive, interconnected canal system through which they may have been able to expand throughout south Florida and access protected areas such as Everglades National Park. The study site, Pinecrest Gardens, is important because it contains remnant coastal cypress-strand habitat in an increasingly urbanized landscape that historically provided refuge to native amphidromous fishes and invertebrates. The project took considerable time (3.5 years), and we detail in this report how it evolved from a focus on isolating the non-native fishes and reducing their population sizes to an eradication. Gardens’ staff hydrologically isolated their ponds from nearby waterbodies by plugging a culvert with a solid gate. That provided the interagency team with more time to remove the potential threats. Compromises were made between fish management strategies and the Gardens’ priorities. Hurricane impacts helped shift priorities to more aggressive fish-management strategies. Cooperation among several federal and state agencies, as well as the Gardens, was key to the project’s success. We hope this effort may serve as a model for removing non-native species before they spread into ecosystems where eradication is not practical.

Florida↗
USGS1995

Effects of surface mining on the hydrology and biology in the Stony Fork basin, Fayette County, Pennsylvania, 1978-85

The effects of surface coal mining on the water quality, sediment discharge, and aquatic biology of streams in the Stony Fork Basin in southwestern Pennsylvania were studied from 1978 through 1985. Data were collected at five stream sites and one mine discharge site. Field data included streamflow, temperature, specific conductance, pH, acidity, and alkalinity. Laboratory analyses included sulfate, aluminum, iron, manganese, zinc, and selected trace elements. Annual streamflow at gaged sites was not substantially different, suggesting that mining did not affect the total volume of streamflow significantly. Comparisons of sediment yields of the upstream control site (site 5) to the downstream site (site 1) indicated that the sediment yield at site 5 was greatest in 1978, 1981-83, and 1985. The sediment yields at both sites in 1979-80 were about the same. Differences in the drainage area sizes and effective control of sediment in the mined areas may explain the lack of increased sediment yield at the downstream site. As mining became more extensive throughout the basin in 1979-80 and later, several water-quality effects were observed downstream. Generally, specific conductance, sulfate, manganese, aluminum, and zinc increased; pH and alkalinity decreased. Acidity and iron typically increased immediately downstream of mined areas. No trace-element concentrations exceeded maximum contaminant levels established by the U.S. Environmental Protection Agency. Surface mining in the Stony Fork Basin severely affected the stream invertebrate and fish populations. During 1977-84, the number of taxonomic groups of invertebrates at sites affected by mine drainage decreased by 45 to 71 percent; the number of fish species decreased by 81 to 88 percent.

Pennsylvania↗
USGS2011

Expansion of tubenose gobies Proterorhinus semilunaris into western Lake Erie and potential effects on native species

The Eurasian freshwater tubenose goby Proterorhinus semilunaris (formerly Proterorhinus marmoratus ) invaded the Laurentian Great Lakes in the 1990s, presumably via ballast water from transoceanic cargo ships. Tubenose gobies spread throughout Lake St. Clair, its tributaries, and the Detroit River system, and also are present in the Duluth-Superior harbor of Lake Superior. Using seines and bottom trawls, we collected 113 tubenose gobies between July 2007 and August 2009 at several locations in western Lake Erie. The number and range of sizes of specimens collected suggest that that tubenose gobies have become established and self-sustaining in the western basin of Lake Erie. Tubenose gobies reached maximum densities in sheltered areas with abundant macrophyte growth, which also is their common habitat in native northern Black Sea populations. The diet of tubenose gobies was almost exclusively invertebrates, suggesting dietary overlap with other benthic fishes, such as darters ( Etheostoma spp. and Percina sp.), madtoms ( Noturus spp.), and sculpins ( Cottus spp.). A single mitochondrial DNA haplotype was identified, which is the most common haplotype found in the original colonization area in the Lake St. Clair region, suggesting a founder effect. Tubenose gobies, like round gobies Neogobius melanostomus , have early life stages that drift owing to vertical migration, which probably allowed them to spread from areas of colonization. The Lake St. Clair-Lake Erie corridor appears to have served as an avenue for them to spread to the western basin of Lake Erie, and abundance of shallow macrophyte-rich habitats may be a key factor facilitating their further expansion within Lake Erie and the remainder of the Laurentian Great Lakes.

Biological Invasions↗
USGS2003

Geomorphology and fish assemblages in a Piedmont river basin, U.S.A.

1. We investigated linkages between fishes and fluvial geomorphology in 31 wadeable streams in the Etowah River basin in northern Georgia, U.S.A. Streams were stratified into three catchment sizes of approximately 15, 50 and 100 km 2 , and fishes and geomorphology were sampled at the reach scale (i.e. 20–40 times stream width). 2. Non-metric multidimensional scaling (NMDS) identified 85% of the among-site variation in fish assemblage structure and identified strong patterns in species composition across sites. Assemblages shifted from domination by centrarchids, and other pool species that spawn in fine sediments and have generalised food preferences, to darter-cyprinid-redhorse sucker complexes that inhabit riffles and runs, feed primarily on invertebrates, and spawn on coarser stream beds. 3. Richness and density were correlated with basin area, a measure of stream size, but species composition was best predicted (i.e. | r | between 0.60–0.82) by reach-level geomorphic variables (stream slope, bed texture, bed mobility and tractive force) that were unrelated to stream size. Stream slope was the dominant factor controlling stream habitat. Low slope streams had smaller bed particles, more fines in riffles, lower tractive force and greater bed mobility compared with high slope streams. 4. Our results contrast with the ‘River Continuum Concept’ which argues that stream assemblages vary predictably along stream size gradients. Our findings support the ‘Process Domains Concept’, which argues that local-scale geomorphic processes determine the stream habitat and disturbance regimes that influence stream communities.

Georgia↗
USGS1991

Influence of pycnocline topography and water-column structure on marine distributions of alcids (Aves: Alcidae) in Anadyr Strait, Northern Bering Sea, Alaska

Systematic ship-board surveys were used to simultaneously record seabird abundances and resolve coarse-scale (3 to 10 km) horizontal and fine-scale (1 to 10 m) vertical variability in water-column structure and bathymetry for portions of the coastal zone in Anadyr Strait near western St. Lawrence Island, northern Bering Sea, Alaska, during August and September 1987. Three plankton-feeding alcids, parakeet ( Cyclorrhynchus psittacula ), crested ( Aethia cristatella ) and least ( A. pusilla ) auklets, each exhibited distinct associations for different pycnocline characteristics. Least auklets were more abundant in mixed water, but they also occurred within stratified water where the pycnocline and upper-mixed layer were shallow (≤8 m) and thin (≤10 m), respectively. Low body mass (85 g), high buoyancy, and relatively poor diving ability may have restricted this auklet to areas where water-column strata nearly intersected the surface, or to areas from which strata were absent altogether due to strong vertical mixing. Parakeet and crested auklets, which are larger-bodied (ca. 260 g) planktivores with presumably greater diving ability, were more abundant in stratified water, and both species exhibited less specific affinities for water-column characteristic at intermediate and shallow levels. All three auklets avoided locations with strong pycnocline gradients (≤0.22 σ t m −1 ), a crude index of the strong, subsurface shear in water velocities characteristic of this region. Auklet distributions in Anadyr Strait were consistent with: (1) strata accessibility, as estimated from relationships between body mass and relative diving ability, (2) possible avoidance of strong subsurface water motions, and (3) habits and distributions of plankton prey. In contrast, largebodied (>450 g) alcids [i.e., common ( Uria aalge ) and thick-billed ( U. lomvia ) murres, pigeon guillemots ( Cephus columba ), tufted ( Fratercula cirrhata ), and horned ( F. corniculata ) puffins feeding on fish or benthic invertebrates] showed no consistent relationships with either the pycnocline or upper-mixed layers. All large alcids were more common in stratified than in vertically-mixed waters, but differences in abundance between mixing regimes were small or equivocal. The only measured variable with which all large alcids were associated was total water-column depth: murres, guillemots, and puffins each used areas with shallow sea floors and avoided areas with deeper sea floors. Failure of large alcids to discriminate among foraging areas in Anadyr Strait as a function of pycnocline topography and strength may be attributable to: (1) greater reliance on large pelagic and benthic prey not associated with the pycnocline; (2) higher body mass, lower buoyancy, and greater diving ability; (3) foraging over a uniquely shallow continental shelf where all vertical strata, including the sea floor, are potentially accessible from the ocean surface.

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