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At least 397 records · Page 22Linked to original sources
USGS1985

Population biology of bluegills, Lepomis macrochirus, in lotic habitats on the irrigated San Joaquin Valley floor

Rapid expansion of irrigated agriculture in the western United States has prompted concerns for aquatic resources. Although the impacts of irrigation activities on quality and quantity of river water are well documented (e.g., high turbidity from soil erosion, eutrophication from nutrient runoff, pesticide contamination, reduced dis- charge), their effects on fish populations are still poorly understood. We studied the food, growth, and relative weight (a measure of body condition) of bluegills, Lepo- mis macrochirus, in relation to environmental factors in reaches of the San Joaquin and Merced rivers that have been affected to varying degrees by irrigation return flows. Fry of bluegills ate mostly cladocerans and copepods; fingerlings and larger fish ate immature aquatic insects, terrestrial insects, amphipods, and mollusks. Bluegill stomachs were fuller and contained a higher diversity of forage taxa in habitats with low turbidity and conductivity, weak buffering capacity, and low nutrient levels; bluegills also ate a more diverse diet where the potential forage supply (benthic macroinvertebrates) was most diverse. Bluegills attained mean total lengths of about 42 mm at age I, 86 mm at age 11, 116 mm at age III, 153 mm at age IV, and 166 mm at age V. Mean relative weight ranged from 96-111. Growth rate and relative weight were not significantly correlated with environmental or dietary variables. On the basis of our study, we concluded that environmental degradation from irrigation activities affected the diet of bluegills primarily by modifying the food supply, but growth rate and body condition were not affected.

California↗
USGS1991

Metal bioavailability and toxicity to fish in low-alkalinity lakes: A critical review

Fish in low-alkalinity lakes having pH of 6·0–6·5 or less often have higher body or tissue burdens of mercury, cadmium, and lead than do fish in nearby lakes with higher pH. The greater bioaccumulation of these metals in such waters seems to result partly from the greater aqueous abundances of biologically available forms (CH 3 Hg + , Cd 2+ , and Pb 2+ ) at low pH. In addition, the low concentrations of aqueous calcium in low-alkalinity lakes increase the permeability of biological membranes to these metals, which in fish may cause greater uptake from both water and food. Fish exposed to aqueous inorganic aluminum in the laboratory and field accumulate the metal in and on the epithelial cells of the gills; however, there is little accumulation of aluminum in the blood or internal organs. In low-pH water, both sublethal and lethal toxicity of aluminum has been clearly demonstrated in both laboratory and field studies at environmental concentrations. In contrast, recently measured aqueous concentrations of total mercury, methylmercury, cadmium, and lead in low-alkalinity lakes are much lower than the aqueous concentrations known to cause acute or chronic toxicity in fish, although the vast majority of toxicological research has involved waters with much higher ionic strength than that in low-alkalinity lakes. Additional work with fish is needed to better assess (1) the toxicity of aqueous metals in low-alkalinity waters, and (2) the toxicological significance of dietary methylmercury and cadmium.

Environmental Pollution↗
USGS2021

Integrating environmental DNA results with diverse data sets to improve biosurveillance of river health

Autonomous, robotic environmental (e)DNA samplers now make it possible for biological observations to match the scale and quality of abiotic measurements collected by automated sensor networks. Merging these automated data streams may allow for improved insight into biotic responses to environmental change and stressors. Here, we merged eDNA data collected by robotic samplers installed at three U.S. Geological Survey (USGS) streamgages with gridded daily weather data, and daily water quality and quantity data into a cloud-hosted database. The eDNA targets were a rare fish parasite and a more common salmonid fish. We then used computationally expedient Bayesian hierarchical occupancy models to evaluate associations between abiotic conditions and eDNA detections and to simulate how uncertainty in result interpretation changes with the frequency of autonomous robotic eDNA sample collection. We developed scripts to automate data merging, cleaning and analysis steps into a chained-step, workflow. We found that inclusion of abiotic covariates only provided improved insight for the more common salmonid fish since its DNA was more frequently detected. Rare fish parasite DNA was infrequently detected, which caused occupancy parameter estimates and covariate associations to have high uncertainty. Our simulations found that collecting samples at least once per day resulted in more detections and less parameter uncertainty than less frequent sampling. Our occupancy and simulation results together demonstrate the advantages of robotic eDNA samplers and how these samples can be combined with easy to acquire, publicly available data to foster real-time biosurveillance and forecasting.

Idaho, Wyoming, Montana↗
USGS2006

A screening-level assessment of lead, cadmium, and zinc in fish and crayfish from northeastern Oklahoma, USA

The objective of this study was to evaluate potential human and ecological risks associated with metals in fish and crayfish from mining in the Tri-States Mining District (TSMD). Crayfish (Orconectes spp.) and fish of six frequently consumed species (common carp, Cyprinus carpio; channel catfish, Ictalurus punctatus; flathead catfish, Pylodictis olivaris; largemouth bass, Micropterus salmoides; spotted bass, M. punctulatus; and white crappie, Pomoxis annularis) were collected in 2001-2002 from the Oklahoma waters of the Spring River (SR) and Neosho River (NR), which drain the TSMD. Samples from a mining-contaminated site in eastern Missouri and from reference sites were also analyzed. Individual fish were prepared for human consumption in the manner used locally by Native Americans (headed, eviscerated, and scaled) and analyzed for lead, cadmium, and zinc. Whole crayfish were analyzed as composite samples of 5-60 animals. Metals concentrations were typically higher in samples from sites most heavily affected by mining and lowest in reference samples. Within the TSMD, most metals concentrations were higher at sites on the SR than on the NR and were typically highest in common carp and crayfish than in other taxa. Higher concentrations and greater risk were associated with fish and crayfish from heavily contaminated SR tributaries than the SR or NR mainstems. Based on the results of this and previous studies, the human consumption of carp and crayfish could be restricted based on current criteria for lead, cadmium, and zinc, and the consumption of channel catfish could be restricted due to lead. Metals concentrations were uniformly low in Micropterus spp. and crappie and would not warrant restriction, however. Some risk to carnivorous avian wildlife from lead and zinc in TSMD fish and invertebrates was also indicated, as was risk to the fish themselves. Overall, the wildlife assessment is consistent with previously reported biological effects attributed to metals from the TSMD. The results demonstrate the potential for adverse effects in fish, wildlife, and humans and indicate that further investigation of human health and ecological risks, to include additional exposure pathways and endpoints, is warranted. ?? Springer Science+Business Media B.V. 2006.

Environmental Geochemistry and Health↗
USGS2022

Failure to achieve recommended environmental flows coincides with declining fish populations: Long-term trends in regulated and unregulated rivers

Dams can be operated to mimic components of the natural flow regime to minimise impacts on downstream ecosystems. However, infrastructure, societal needs, water management, and catchment runoff constrain which and when flow regime attributes can be mimicked. We compared fish assemblage responses, including native and non-native species, over 2 decades of managed environmental flows to those in a river retaining a relatively unaltered flow regime. Both of these arid-land rivers are within the overallocated Colorado River basin and have experienced declines in catchment runoff over the past 20 years. We predicted that fish–flow relationships would be conserved across time and between managed and unmanaged rivers. Declines in flow in both rivers coincided with declines in some native fishes, and more native and non-native fish species exhibited declines in the managed river than in the unmanaged river. Our ability to detect previously documented native fish–flow relationships diminished in the managed river system because established environmental flow targets were not met due to water management, but we detected these fish–flow relationships in the unmanaged river. Our results suggest declining catchment runoff and increased consumptive water use could reduce the effectiveness of environmental flows that have lower priority in most years.

Freshwater Biology↗
USGS2007

Characterization of habitat and biological communities at fixed sites in the Great Salt Lake basins, Utah, Idaho, and Wyoming, water years 1999-2001

Habitat and biological communities were sampled at 10 sites in the Great Salt Lake Basins as part of the U.S. Geological Survey National Water-Quality Assessment program to assess the occurrence and distribution of biological organisms in relation to environmental conditions. Sites were distributed among the Bear River, Weber River, and Utah Lake/Jordan River basins and were selected to represent stream conditions in different land-use settings that are prominent within the basins, including agriculture, rangeland, urban, and forested. High-gradient streams had more diverse habitat conditions with larger substrates and more dynamic flow characteristics and were typically lower in discharge than low-gradient streams, which had a higher degree of siltation and lacked variability in geomorphic channel characteristics, which may account for differences in habitat. Habitat scores were higher at high-gradient sites with high percentages of forested land use within their basins. Sources and causes of stream habitat impairment included effects from channel modifications, siltation, and riparian land use. Effects of hydrologic modifications were evident at many sites. Algal sites where colder temperatures, less nutrient enrichment, and forest and rangeland uses dominated the basins contained communities that were more sensitive to organic pollution, siltation, dissolved oxygen, and salinity than sites that were warmer, had higher degrees of nutrient enrichment, and were affected by agriculture and urban land uses. Sites that had high inputs of solar radiation and generally were associated with agricultural land use supported the greatest number of algal species. Invertebrate samples collected from sites where riffles were the richest-targeted habitat differed in species composition and pollution tolerance from those collected at sites that did not have riffle habitat (nonriffle sites), where samples were collected in depositional areas, woody snags, or macrophyte beds. Invertebrate taxa richness, pollution tolerance, and trophic interactions at riffle and nonriffle sites responded differently to environmental variables. Fish communities were assessed in relation to the designated beneficial use for aquatic life for each site. Fish-community sites in basins where agriculture and urbanization were prevalent consistently had poorer conditions than sites with forest and rangeland uses. Warm temperatures appear to be limiting most native fish species, and more introduced, warm-water fish species were present at sites with warmer temperatures. Ranges of environmental conditions where native species were present or absent were identified. The farthest-upstream site in each of the three basins had better ecological condition overall, as indicated by the integrity of habitat and the presence of more sensitive algae, invertebrate, and fish species than were observed at sites downstream. The farthest-downstream site in each of the three basins showed the poorest ecological condition, with more tolerant organisms present, degraded habitat and water-quality conditions, and a high degree of effects from agriculture, grazing, and urbanization. Of the mid-basin sites, the site most affected by urbanization had more degraded biological condition than the agricultural indicator site of similar basin size.

Idaho, Utah, Wyoming↗
USGS2000

Organochlorine compounds in streambed sediment and in biological tissue from streams and their relations to land use, central Arizona

Streambed-sediment samples from 13 sites and biological-tissue samples from 11 sites in the Gila River Basin in central Arizona were analyzed for 32 organochlorine compounds in streambed sediment and 28 compounds in biological tissue during 1996 as part of the U.S. Geological Survey's National Water-Quality Assessment program. The objectives of the study were to determine the occurrence and distribution of organochlorine compounds and their relation to land use. Sampling sites were categorized on the basis of major land uses in the basin or the source of water in the stream. Because land uses were mixed or had changed over time, some land-use categories were combined. Sites were categorized as forest/rangeland (6), forest/urban (1), urban (4), or agricultural/urban (2). Thirteen organochlorine compounds were detected in streambed-sediment samples, and 10 were detected in tissue samples. The number of compounds found in streambed-sediment samples from individual sites ranged from 0 to 10, and the range for individual tissue samples was 0 to 7. Comparison of the number of detections in streambed-sediment samples to the number of detections in tissue samples from particular sites where both were sampled yielded five instances where more compounds were detected in streambed sediment, six instances where more compounds were detected in tissue, and five instances where the number of detections in streambed sediment and tissue were equal. The frequency of detection of particular compounds for sites where both streambed sediment and tissue were sampled resulted in five compounds being detected more frequently in streambed sediment, five more frequently in tissue, and three compounds that were equally frequent in streambed sediment and in tissue. Few contaminants were detected in samples from the forest/rangeland sites; greater numbers of compounds were detected at the urban sites and at the forest/urban site. The greatest number of compounds and the highest concentrations of many contaminants were detected at agriculture/urban sites. The compound detected most frequently in streambed-sediment and tissue samples was p,p'-DDE. Streambed-sediment guideline values for the protection of aquatic life for p,p'-DDE and total DDT were exceeded at both agricultural/urban sites, The streambed-sediment guideline value for the protection of aquatic life for total chlordane was exceeded at one agricultural/urban site, one urban site, and the forest/urban site. The streambed-sediment guideline value for the protection of aquatic life for total PCB’s was exceeded at one agricultural/urban site. Guideline values for the protection of fish-eating wildlife for total DDT and for toxaphene were exceeded only in samples from the two agricultural/urban sites. The guideline value for the protection of fish-eating wildlife for total PCB’s was equaled or exceeded in samples from two sites—one urban and one agricultural/urban site. Screening values established by the U.S. Environmental Protection Agency for the protection of human health for edible portions of fish were exceeded by total DDT and by toxaphene in fish-tissue samples from both agricultural/urban sites. The human-health criterion for total PCB’s was exceeded in two fish-tissue samples from an agricultural site and from an urban site. Tissue samples analyzed in this study were for whole fish, and thus, concentration data are not entirely comparable to the screening values of the U.S. Environmental Protection Agency. Because these exceedences were an order of magnitude above the criteria, however, it is possible that concentrations in the edible portions of fish from these locations could present a human- health risk. Analyses of samples of edible portions of fish from these locations would be needed to adequately assess the presence or absence of a human-health risk. The similarity of the results of this study to the results of other studies of organochlorine compounds in the environment suggests that there is a correlation between contaminants in sediment and biological-tissue samples and land uses. As with other studies of the occurrence and distribution of organochlorine contaminants in streambed sediments and biological tissue, this study shows that many organochlorine compounds continue to persist in the environment and thus could pose a threat to aquatic life, fish-eating wildlife, and possibly to humans who consume contaminated fish.

Arizona↗
USGS1999

Biological assessment of the lower Boise River, October 1995 through January 1998, Ada and Canyon Counties, Idaho

The lower Boise River, between Lucky Peak Dam and the mouth of the river near Parma, Idaho, is adversely affected by various land- and water-use activities. To assess the biotic integrity of the river and the effects of environmental perturbations on aquatic community structure, and to provide a baseline from which to identify future changes in habitat conditions, biological data were collected from October 1995 through January 1998 and evaluated using protocols developed for the U.S. Geological Survey National Water-Quality Assessment Program. Aquatic biological communities were sampled according to the following schedule: epilithic periphyton were collected in October 1995, October 1996, and August 1997; benthic macroinvertebrates were collected in October 1995, 1996, and 1997; and fish were collected in December 1996 and August 1997. Qualitative measurements of instream and riparian habitat indicated an overall decrease in instream habitat quality in a downstream direction. Embeddedness was high at all sites but was lower at the Eckert Road site than at the downstream sites near Middleton and Parma. Silt/sand substrate increased from 17 percent at the Eckert Road site to 49 percent near the mouth of the river. The Eckert Road site had a mix of geomorphic channel units (pool/riffle/run), whereas the Middleton and Parma sites were dominated by runs with very little pool or riffle habitat. Epilithic periphyton chlorophyll- a and ashfree dry weight values tended to increase downstream to the Middleton site and decrease from Middleton to the downstream sites near Caldwell and near Parma. Benthic index of biotic integrity (B-IBI) scores for macroinvertebrates collected in 1995, 1996, and 1997 were highest at the Eckert Road site and decreased at sites downstream. IBI scores for fish collected in 1996 were similar at the Glenwood Bridge and Middleton sites (17 and 16, respectively) and were indicative of a low to moderate level of disturbance. In contrast, the IBI score of 6 at the site near Parma was markedly lower and was indicative of more degraded conditions.

Idaho↗
USGS2002

Introduction

The Arctic National Wildlife Refuge in northeastern Alaska is one of 16 refuges in Alaska and 539 refuges nationwide within the National Wildlife Refuge System administered by the U.S. Fish and Wildlife Service. First established as the Arctic National Wildlife Range in 1960 by Public Land Order 2214, it initially had a three-fold purpose to preserve unique wildlife, wilderness, and recreation values on 8.9 million acres. In 1980, the Arctic National Wildlife Range was expanded to the southwest and renamed the Arctic National Wildlife Refuge (also called the Arctic Refuge in this report) when the U.S. Congress passed the Alaska National Interest Lands Conservation Act (ANILCA), Public Law 96-487 (94 Stat. 2371). This legislation also designated almost all of the original Arctic National Wildlife Range as wilderness, and it directed the Secretary of the Interior to conduct studies evaluating both the biological resources and the potential petroleum reserves of 1.5 million acres (titled the 1002 Area) on the coastal plain of the Arctic Refuge. In April 1982, the Arctic Refuge staff completed a report summarizing the then current state of knowledge on the fish, wildlife, and their habitats present on the coastal plain of the Arctic Refuge (U.S. Fish and Wildlife Service 1982). From 1982 to 1985, field investigations of biological resources of the 1002 Area were carried out by a number of investigators, and annual reports summarized the results (Garner and Reynolds 1983, 1984, 1985, 1986, 1987). These reports and other resources were used to prepare a Department of the Interior report to Congress: Arctic National Wildlife Refuge, Alaska Coastal Plain Resource Assessment - Report and Recommendation to the Congress of the United States and Final Environmental Impact Satement (Clough et al., 1987).

Alaska, Northwest Territories, Yukon Territory↗
USGS2004

Biological assessment of streams in the Indianapolis Metropolitan Area, Indiana, 1999-2001

During 1999?2001, benthic invertebrates and fish were sampled to describe biological communities in the White River and selected tributaries in the Indianapolis Metropolitan Area in Indiana. Twelve sites (six on the White River and six on tributaries) were sampled biannually for benthic invertebrates and annually for fish. The information complements water-chemistry data collected by the Indianapolis Department of Public Works in the study area. Evaluation of the habitat for sites in the study area was done, using a Qualitative Habitat Evaluation Index (QHEI) developed by the Ohio Environmental Protection Agency. The QHEI scores basin and habitat characteristics for each site, with a maximum possible score of 100. Higher scores indicate better habitat conditions for biotic communities. The QHEI scores for sites on the White River ranged from 55 at the Harding site to 71 at the Waverly site; scores on the tributaries ranged from 45 on Pogues Run to 82 on Williams Creek. A total of 151 taxa were identified from the benthic-invertebrate samples. The Ephemeroptera, Plecoptera, and Trichoptera (EPT) Index scores for sites on the White River ranged from 0 at the Harding site to 15 at the Nora site. The Nora site, which is upstream from Indianapolis, generally scored the highest of all White River sites. Sites in the immediate vicinity of Indianapolis scored the lowest and indicate a negative effect on benthic-invertebrate communities in that reach. EPT Index scores increased in the farthest downstream reaches, which indicate that water-quality conditions had improved in comparison to sites in Indianapolis. For the tributary sites, EPT Index values ranged from 0 at Pogues Run to 16 at Buck Creek. Tributary sites on Fall Creek, Pleasant Run, and Pogues Run consistently scored 7 or lower; sites on Buck Creek, Eagle Creek, and Williams Creek scored 7 or higher. Hilsenhoff Biotic Index (HBI) scores ranged from 4.9 (good) to 9.6 (very poor) for the White River sites and from 5.2 (good) to 8.0 (poor) for the tributary sites. The lowest scores among the White River sites were at the Nora site, indicating the best water-quality conditions were where the White River enters Marion County. The highest HBI scores were at the Morris and Harding sites, indicating the least-favorable water-quality conditions of all the White River sites. Of the tributary sites, HBI scores for Buck, Eagle, and Williams Creeks indicate fair water-quality conditions; HBI scores for Pleasant Run and Pogues Run were the highest, indicating relatively poor water-quality conditions. On the White River, the highest Invertebrate Community Index (ICI) scores, which indicate the best benthic-invertebrate conditions, were at the Nora site. Conditions were fair to poor in the downtown Indianapolis area; ICI scores indicate slight improvement in the downstream reaches of the study area. Of the tributary sites, Buck Creek was the only site with ICI scores indicating exceptional water quality. Williams Creek ICI scores indicate good water quality; the remaining tributary-site scores reflect fair conditions. A total of 74 species and 3 hybrids of fish were identified during the study period. The Cyprinidae (carps and minnows) was the largest group of fish identified and consisted of more than half of all fish collected. The most numerous species was the central stoneroller (Campostoma anomalum), which accounted for almost 25 percent of the fish identified. Two nonnative species, the koi carp (Cyprinus carpio) and the western mosquitofish (Gambusia affinis), and one species classified as an Indiana species of special concern, the northern studfish (Fundulus catenatus), also were collected during the study. Indiana Index of Biotic Integrity (IBI) and Ohio Index of Biotic Integrity scores were calculated to show the condition of the fish communities at each site. Results of the Indiana IBI calculations showed no apparent differences in scores among the Wh

Water-Resources Investigations Report↗
USGS2014

Photoperiod control of downstream movements of Atlantic salmon Salmo salar smolts

This study provides the first direct observations that photoperiod controls the initiation of downstream movement in Atlantic salmon Salmo salar smolts. Under simulated natural day length (LDN) conditions and seasonal increases in temperature, smolts increased their downstream movements five-fold for a period of 1 month in late spring. Under the same conditions, parr did not show changes in downstream movement behaviour. When given a shortened day length (10L:14D) beginning in late winter, smolts did not increase the number of downstream movements. An early increase in day length (16L:8D) in late winter resulted in earlier initiation and termination of downstream movements compared to the LDN group. Physiological status and behaviour were related but not completely coincident: gill Na + /K + -ATPase activity increased in all treatments and thyroid hormone was elevated prior to movement in 16L:8D treatment. The most parsimonious model describing downstream movement of smolts included synergistic effects of photoperiod treatment and temperature, indicating that peak movements occurred at colder temperatures in the 16L:8D treatment than in LDN, and temperature did not influence movement of smolts in the 10L:14D treatment. The complicated interactions of photoperiod and temperature are not surprising since many organisms have evolved to rely on correlations among environmental cues and windows of opportunity to time behaviours associated with life-history transitions. These complicated interactions, however, have serious implications for phenological adjustments and persistence of S . salar populations in response to climate change.

Journal of Fish Biology↗
USGS1989

Irrigation-induced contamination--How real a problem

The U.S. Department of the Interior has embarked on a series of reconnaissance‐level investigations throughout the western states to identify, evaluate, and respond to irrigation‐induced water quality problems. A series of water, sediment, and biological samples are being analyzed for 17 inorganic constituents and a number of pesticides. 19 studies in 13 states have been undertaken. Seven have been completed to date. Results of the seven studies that have been completed are presented and compared to baselines, standards, criteria, and other guidelines helpful for assessing the potential of observed constituent concentrations in water, bottom sediment, and biota, to result in physiological harm to fish, wildlife, or humans. These initial results indicate that a new environmental problem of major proportions does not exist, but that some localized problems of significant magnitude do exist and should be addressed.

Journal on Irrigation Drainage Engineering↗
USGS2000

Empirical assessment of fish introductions in a subtropical wetland: An evaluation of contrasting views

We summarized data from eight quantitative fish surveys conducted in southern Florida to evaluate the distribution and relative abundance of introduced fishes across a variety of habitats. These surveys encompassed marsh and canal habitats throughout most of the Everglades region, including the mangrove fringe of Florida Bay. Two studies provided systematically collected density information over a 20-year period, and documented the first local appearance of four introduced fishes based on their repeated absence in prior surveys. Those species displayed a pattern of rapid population growth followed by decline, then persistence at lower densities. Estuarine areas in the southern Everglades, characterized by natural tidal creeks surrounded by mangrove-dominated marshes, and canals held the largest introduced-fish populations. Introduced fishes were also common, at times exceeding 50% of the fish community, in solution holes that serve as dry-season refuges in short-hydroperiod rockland habitats of the eastern Everglades. Wet prairies and alligator ponds distant from canals generally held few individuals of introduced fishes. These patterns suggest that the introduced fishes in southern Florida at present may not be well-adapted to persist in freshwater marshes of the Everglades, possibly because of an interaction of periodic cold-temperature stress and hydrologic fluctuation. Our analyses indicated low densities of these fishes in central or northern Everglades wet-prairie communities, and, in the absence of experimental data, little evidence of biotic effects in this spatially extensive habitat. There is no guarantee that this condition will be maintained, especially under the cumulative effects of future invasions or environmental change.

Biological Invasions↗
USGS2014

Body morphology differs in wild juvenile Chinook salmon Oncorhynchus tshawytscha in the Willamette River, Oregon, USA

Body morphology of juvenile Chinook salmon Oncorhynchus tshawytscha in the upper Willamette River, Oregon, U.S.A., was analysed to determine if variation in body shape is correlated with migratory life-history tactics followed by juveniles. Body shape was compared between migrating juveniles that expressed different life-history tactics, i.e . autumn migrants and yearling smolts, and among parr sampled at three sites along a longitudinal river gradient. In the upper Willamette River, the expression of life-history tactics is associated with where juveniles rear in the basin with fish rearing in downstream locations generally completing ocean ward migrations earlier in life than fish rearing in upstream locations. The morphological differences that were apparent between autumn migrants and yearling smolts were similar to differences between parr rearing in downstream and upstream reaches, indicating that body morphology is correlated with life-history tactics. Autumn migrants and parr from downstream sampling sites had deeper bodies, shorter heads and deeper caudal peduncles compared with yearling smolts and parr from the upstream sampling site. This study did not distinguish between genetic and environmental effects on morphology; however, the results suggest that downstream movement of juveniles soon after emergence is associated with differentiation in morphology and with the expression of life-history variation.

Oregon↗
USGS2012

Urban development results in stressors that degrade stream ecosystems

In 2003, eighty-three percent of Americans lived in metropolitan areas, and considerable population increases are predicted within the next 50 years. Nowhere are the environmental changes associated with urban development more evident than in urban streams. Contaminants, habitat destruction, and increasing streamflow flashiness resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Every stream is connected downstream to other water bodies, and inputs of contaminants and (or) sediments to streams can cause degradation downstream with adverse effects on biological communities and on economically valuable resources, such as fisheries and tourism. Understanding how algal, invertebrate, and fish communities respond to physical and chemical stressors associated with urban development can provide important clues on how multiple stressors may be managed to protect stream health as a watershed becomes increasingly urbanized. This fact sheet highlights selected findings of a comprehensive assessment by the National Water-Quality Assessment Program of the U.S. Geological Survey (USGS) of the effects of urban development on stream ecosystems in nine metropolitan study areas.

Fact Sheet↗
USGS2013

Baseline assessment of physical characteristics, aquatic biota, and selected water-quality properties at the reach and mesohabitat scale for reaches of Big Cypress, Black Cypress, and Little Cypress Bayous, Big Cypress Basin, northeastern Texas, 2010–11

In 2010 and 2011, the U.S. Geological Survey (USGS), in cooperation with the Northeast Texas Municipal Water District and the Texas Commission on Environmental Quality, did a baseline assessment of physical characteristics and aquatic biota (fish and mussels) collected at the mesohabitat scale for reaches of Big Cypress, Black Cypress, and Little Cypress Bayous in the Big Cypress Basin in northeastern Texas, and measured selected water-quality properties in isolated pools in Black Cypress and Little Cypress. All of the data were collected in the context of prescribed environmental flows. The information acquired during the course of the study will support the long-term monitoring of biota in relation to environmental flow prescriptions for Big Cypress Bayou, Black Cypress Bayou, and Little Cypress Bayou. Data collection and analysis were done at mesohabitat- and reach-specific scales, where a mesohabitat is defined as a discrete area within a stream that exhibits unique depth, velocity, slope, substrate, and cover. Biological and physical characteristic data were collected from two sites on Big Cypress Bayou, and one site on both Black Cypress Bayou and Little Cypress Bayou. The upstream reach of Big Cypress Bayou (USGS station 07346015 Big Cypress Bayou at confluence of French Creek, Jefferson, Texas) is hereinafter referred to as the Big Cypress 02 site. The downstream site on Big Cypress Bayou (USGS station 07346017 Big Cypress Bayou near U.S. Highway 59 near Jefferson, Tex.) is hereinafter referred to as the Big Cypress 01 site and was sampled exclusively for mussels. The sites on Black Cypress Bayou (USGS station 07346044 Black Cypress Bayou near U.S. Highway 59 near Jefferson, Tex.) and Little Cypress Bayou (USGS station 07346071 Little Cypress Bayou near U.S. Highway 59 near Jefferson, Tex.) are hereinafter referred to as the Black Cypress and Little Cypress sites, respectively. A small range of streamflows was targeted for data collection, including a period of low flow during July and August 2010 and a period of very low flow during July 2011. This scenario accounts for variability in the abundance and distribution of fish and mussels and in the physical characteristics of mesohabitats present during different flow conditions. Mussels were not collected from the Little Cypress site. However, a quantitative survey of freshwater mussels was conducted at Big Cypress 01. Of the three reaches where physical habitat data were measured in 2010, Big Cypress 02 was both the widest and deepest, with a mean width of 62.2 feet (ft) and a mean depth of 5.5 ft in main-channel mesohabitats. Little Cypress was the second widest and deepest, with a mean width of 49.9 ft and a mean depth of 4.5 ft in main-channel mesohabitats. Black Cypress was by far the narrowest of the three reaches, with a mean width of 29.1 ft and a mean depth of 3.3 ft in main-channel mesohabitats but it had the highest mean velocity of 0.42 feet per second (ft/s). Appreciably more fish were collected from Big Cypress 02 (596) in summer 2010 compared to Black Cypress (273) or Little Cypress (359), but the total number of fish species collected among the three reaches was similar. Longear sunfish was the most abundant fish species collected from all three sites. The total number of fish species was largest in slow run mesohabitats at Big Cypress 02, fast runs at Black Cypress, and slow runs at Little Cypress. The catch-per-unit-effort of native minnows was largest in fast runs at Big Cypress 02. More species of native minnows, including the ironcolor and emerald shiner, were collected from Little Cypress relative to all other mesohabitats at all sites. Fifteen species and 182 individuals of freshwater mussels were collected, with 69.8 percent of the individual mussels collected from Big Cypress 02, 23.6 percent collected from Big Cypress 01, and 6.6 percent collected from Black Cypress. Big Cypress 01was the most species rich site with 13 species, and washboards were the most abundant species overall. Mussels were not collected from Little Cypress because there was no flow in this stream during the targeted sampling period in 2011. On July 30, 2010, when the estimated streamflow at the site (based on daily mean discharge measured at the upstream gage in conjunction with powerplant withdrawals) was 45 cubic feet per second (ft 3 /s), Big Cypress 02 had a mean width of 62.2 ft and a mean depth of 5.5 ft in main-channel mesohabitats. On July 27, 2011, when instantaneous streamflow at the site was 10 ft 3 /s, the mean width and mean depth in main-channel mesohabitats decreased to 49.6 ft and 3.1 ft, respectively. Mean velocity in 2010 (0.31 ft/s) was approximately twice as high as 2011 (0.17 ft/s) in main-channel mesohabitats. About 14 percent more fish were collected from Big Cypress 02 in 2010 relative to 2011, and about 18 percent fewer fish species were identified in 2011 at this site compared to 2010. Longear sunfish, which was the most abundant fish species collected in 2010, was second to western mosquitofish in 2011. In the absence of flow during fall 2011, the reach at Black Cypress was reduced to four isolated pools, and the reach at Little Cypress was reduced to three isolated pools. Dissolved oxygen, temperature, pH, and specific conductance data were collected from the pools because it was hypothesized that these conditions would be the most limiting with respect to aquatic life. Dissolved oxygen concentrations ranged from 0.58 milligrams per liter (mg/L) to 4.79 mg/L at Black Cypress and from 0.24 mg/L to 5.33 mg/L at Little Cypress; both sites exhibited a stratified pattern in dissolved oxygen concentrations along transect lines, but the pattern was less pronounced at Black Cypress.

Texas↗
USGS2000

Environmental factors influencing the distribution and salvage of young delta smelt: a comparison of factors occurring in 1996 and 1999

The delta smelt (Hypomesus transpacificus) is listed as a threatened species under both the Federal Endangered Species Act (FESA) and the California Endangered Species Act. Through formal consultation under Section 7 of the FESA, USBR and DWR received a Biological Opinion from the USFWS, which allows for the incidental take of delta smelt arising through operation of the Central Valley Project and the State Water Project. The incidental take of delta smelt is estimated as part of the ongoing CVP and SWP fish salvage operations. Salvage levels of young delta smelt have exceeded incidental take levels every spring and summer since 1994, except in the high spring outflow years of 1995 and 1998 (Nobriga and others 1999). These high salvage levels have resulted in changes to project operations, often leading to the curtailment of water exports. An extended period of high salvage and export curtailment in 1999 raised substantial concerns and numerous questions that remain unanswered.

Interagency Ecological Program Newsletter↗
USGS1999

Selected elements and organic chemicals in bed sediment and fish tissue of the Tualatin River basin, Oregon, 1992-96

A variety of elements and organic compounds have entered the environment as a result of human activities. Such substances find their way to aquatic sediments from direct discharges to waterways, atmospheric emissions, and runoff. Some of these chemicals are known to harm fish or wildlife, either by direct toxicity, by reducing viability, or by limiting reproductive success. In aquatic systems, sediments become the eventual sink for most of these chemicals. Analyzing the sediments provides a first step in a chemical inventory that can lead to an assessment of potential biological impacts (Kennicutt and others, 1994). Many elements (iron, aluminum, calcium, and others) enter the environment from the natural weathering of rock. Additional amounts of elements have been contributed by human activities such as mining, metals production and processing, fossil fuel combustion, municipal waste incineration, and transportationrelated sources. The environmental presence of some elements, such as lead and mercury, is almost entirely due to human activity. Lead is often associated with the use of leaded gasoline and from the manufacture and disposal of lead storage batteries. Mercury was used historically in a variety of industrial processes and as a pesticide. Nriagu and Pacyna (1998) concluded that human activity is the “most important element in the global biogeochemical cycling of the trace metals.” The number of organic compounds in existence and their total production has more than tripled in the last century. Many of these compounds enter the environment directly as pesticides; others are inadvertently discharged. Some organic compounds have natural sources. Three general classes of organic compounds will be discussed: organochlorine compounds, polyaromatic hydrocarbons, and phthalates. Almost all organochlorine compounds are manmade. Many are pesticides that were used widely in the 1950s–60s (DDT and chlordanes, for example). Use of most organochlorine pesticides was restricted or banned in the United States in the 1970s–80s. Polychlorinated biphenyls (PCBs) are also organochlorine compounds; they were used for a variety of applications, but most commonly as insulators in electrical transformers and other equipment. In general, organochlorine compounds degrade very slowly in the environment and therefore, are routinely found in environmental samples, despite the fact that they are no longer used in the United States. They are hydrophobic that is they do not dissolve readily in water and, in aquatic systems, are almost exclusively associated with sediments or tissue. Because these compounds cause a variety of adverse health effects in wildlife, the U.S. Environmental Protection Agency (USEPA) has listed many as priority pollutants. Organochlorine compounds also have been implicated as endocrine disrupters— chemicals that can interfere with the normal function of hormones. Polyaromatic hydrocarbons (PAHs) are found in sediments throughout the world (Hites and others, 1980). Their presence is thought to be primarily anthropogenic. PAHs occur naturally in petroleum products and also are produced during combustion. They enter the environment from fuel spills, tar coatings, coal and other fossil fuel usage, road dust, and from the atmospheric deposition of combustion products (Prahl and others, 1984; Wakeham and others, 1980). Urban areas often have high concentrations of PAHs because of transportation-related sources (vehicle exhaust, paving materials, and releases of fuel or oil). Natural sources, such as forest fires, may contribute small amounts of PAHs. Several PAHs are known carcinogens (benzo[a]pyrene, for example); 16 are listed as USEPA priority pollutants. Phthalate compounds are often associated with urban areas. They are used in a wide variety of industrial applications and in inks, adhesives, resins, and as plasticizers (chemicals that increase the flexibility of plastics). In aquatic systems, phthalates are found mostly in sediments where they degrade very slowly. Phthalates are thought to be endocrine disrupters; Jobling and others (1995) found that some phthalates were weakly estrogenic. USEPA considers some phthalates to be possible carcinogens. This report describes the results of a reconnaissance survey of elements and organic compounds found in bed sediment and fish tissue in streams of the Tualatin River Basin. The basin is in northwestern Oregon to the west of the Portland metropolitan area (fig. 1). The Tualatin River flows for about 80 miles, draining an area of about 712 square miles, before it enters the Willamette River. Land use in the basin changes from mostly forested in the headwaters, to mixed forest and agriculture, to predominately urban. The basin supports a growing population of more than 350,000 people, most of whom live in lower parts of the basin. Water quality in the Tualatin River and its tributaries is expected to be affected by the increasing urbanization of the basin.

Oregon↗