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Detection of viral, bacterial, and protozoan pathogens and microbial source tracking markers in paired large- and small-volume water samples

When sampling for waterborne microbes, researchers may need to diverge from recommended sample volumes due to logistical constraints, novel targets, or challenging matrices, with little guidance about the potential impact on results. In field studies, we measured bacteria, viruses, and protozoa (15 quantitative polymerase chain reaction assays) in paired large- and small-volume samples to evaluate method performance and relevant factors. Concordance between methods was low. Large-volume ultrafiltration yielded more detections than small-volume sampling, especially for pathogens in groundwater. Greater microbial concentrations were associated with more frequent detections in small-volume samples and greater concordance between paired samples. Large-volume samples appeared to be more susceptible to diminished sensitivity from complex sample matrices. In laboratory studies, recovery of microbes was poorer for large- than small-volume methods, although large-volume methods more reliably detected low-concentration targets. Large-volume samples were less stable than small-volume samples during storage. Overall, large-volume sampling was superior for detecting pathogens but may underestimate concentrations; small-volume sampling was more prone to false negatives but was adequate when concentrations were relatively high, like we observed for microbial source tracking in surface waters.

Wisconsin

Apatite geo-thermochronology and geochemistry constrain Oligocene-Miocene growth and geodynamics of the northeastern Tibetan Plateau

Understanding the geodynamics of plateau evolution requires examining the spatial and temporal aspects of mountain building in the northeastern Tibetan Plateau, which are still under debate. Here we integrate apatite geo-thermochronological and geochemical data from the Oligocene-Miocene succession of the Xunhua Basin to elucidate the evolution of the regional topography. The results suggest sediment provenance changes, at ca. 28, 20 and 12 Ma, indicating topographic growth of the West Qinling, Laji Shan, and Jishi Shan source areas, respectively. Our findings reveal Oligocene-Miocene stepwise deformation and middle Miocene stress reorganization within the northeastern Tibetan Plateau. We attribute this to Oligocene lithospheric foundering beneath the south-central Tibetan Plateau and the middle Miocene initiation of sinistral strike-slip faults due to the underthrusting of India and North China. This study highlights the roles of lithospheric removal and continental underthrusting in plateau growth, and the value of multi-proxy apatite analyses in provenance studies.

Northeastern Tibetan Plateau

Petrography and mineralogy of selected pre-Middle Jurassic basement rocks beneath the Atlantic and Gulf Coastal Plains in Florida

Florida is covered by flat-lying sedimentary strata of the Atlantic and Gulf Coastal Plains. These strata have accumulated since Middle Jurassic time. The pre-Middle Jurassic, or basement, rocks that underlie the Coastal Plain in Florida are known only from drill cores and cuttings recovered from a relatively small number of boreholes. This data report presents petrographic observations and the results of X-ray diffraction analyses of basement rocks from 18 boreholes across Florida in support of the identification, discrimination, and correlation of units for a subcrop geologic map of pre-Middle Jurassic rocks composing Florida’s sub-Coastal Plain geology.

Florida

Colored shaded-relief bathymetric and acoustic-backscatter maps of Jenkinson Lake with orthomosaic of the Sly Park Creek and Hazel Creek area, California

The Caldor Fire was ignited on August 14, 2021, and burned almost 222,000 acres (898 square kilometers) in forested terrain of the central and western Sierra Nevada, California. During the subsequent two months, the fire burned nearly all of Sly Park Creek watershed in El Dorado County. The El Dorado Irrigation District manages the water supply for the area using storage in Jenkinson Lake, a 1.6-kilometer- (1.0-mile-) wide and 3.6-kilometer- (2.2-mile-) long reservoir, located south of the town of Pollock Pines. Several weeks after the fire, the U.S. Geological Survey began investigations into post-fire landscape responses, including sediment yield, by measuring new sediment deposition in Jenkinson Lake. This study focused on the collection and processing of bathymetric and acoustic-backscatter data, as well as onshore aerial imagery in and around Jenkinson Lake, to support wildfire science after the Caldor Fire. A colored shaded-relief bathymetric map (sheet 1) and an acoustic backscatter map (sheet 2) show the lake floor morphology and backscatter intensities.

California

Identifying transportation data and system needs for a Federal lands transportation data platform

Executive Summary Modern transportation and land-use planning efforts include information from many sources to address topics such as safety, efficiency, commercial, and social needs. This wide breadth of topics provides opportunities for collaboration and development of common tools for diverse users. In many cases, different information systems provide the spatial data and geographic content necessary for transportation and land-use planners to consider multiple lines of evidence. The Federal Highway Administration Office of Federal Lands Highway (FLH) and Federal Land Management Agency partners use detailed spatial and quantitative data to inform transportation decisions. However, logistic challenges to data sharing exist because data are often managed by separate agencies; data-exchange frameworks and interagency data agreements are insufficient; and consistency from aggregated data requires maintenance, coordination, and supporting infrastructure. The FLH and U.S. Geological Survey collaboratively examined (1) use and availability of spatial data for transportation planning and (2) a possible mechanism to use more shared and consistent data in a common planning environment. The goals of this collaborative effort were to describe data needs from the perspective of planners and to identify opportunities for shared data resources. Results presented here focus on two workshops and a subsequent investigation of data and tools available from partner agencies. The objectives of this report are to (1) describe information used in transportation planning with geographic data; (2) identify spatially explicit data that inform transportation plans and could be shared among all partners; and (3) describe current platforms, planning and administrative opportunities, and potential barriers to developing an integrated planning tool. Key information and data needs were identified in three major classes: system, user, and influential factors. System data are parts of the transportation network and information about the condition of individual segments and the network. User data provide details about the function of the system and insights into potential needs; for example, user trips between source and destinations inform road and network demands that can lead to congestion and safety issues (in the future, user data might also include scenarios and projections based on land-use plans). Influential data represent social and environmental factors that influence transit demands and network conditions. These factors could be popular locations or seasonal events that influence demand and congestion; wildlife habitat or migration intersections that affect safety and management priorities; or geologic features that influence hazards, maintenance, and safety. Responses described here provide specific information for web-tool design and give a framework for interagency communication and cooperation to address specific information needs for integrated planning. Existing web-mapping and web-services, and the data that inform them, are also described. Commonly, these data are created and published by one agency, and the core users are outside of that agency; for example, threatened species distributions are published by the U.S. Fish and Wildlife Service for consideration by planners in advance of National Environmental Policy Act (42 U.S.C. 4321 et seq.) evaluation. This report is provided to inform FLH leaders and Federal Land Management Agency partners by articulating user needs and requirements for integrated planning tool(s). Programmers creating a secure web-based data-sharing platform (with data-viewing, -analysis and -download functions) can use the information presented here to organize data and user interfaces. This integrated perspective can help FLH and Federal Land Management Agency partners develop transportation networks that better serve the needs of people in local communities and across States and the Nation.

Open-File Report

Integrating detrital magnetite geochemistry and (U-Th)/He chronometry as a sediment provenance tool in geologic and metallogenic terranes

Magnetite is ubiquitous in porphyry Cu systems and in sediment sourcing both barren and mineralized regions, with potential as an indicator mineral in concealed and coarsely-mapped terranes. We develop and test a workflow for integrated geochemistry and (U–Th)/He (He) dating for inferring detrital magnetite (DMt) provenance in these settings. The ca. 70 Ma Taurus porphyry Cu–Mo(–Au) district in eastern interior Alaska serves as a test case. DMt from streams draining porphyry-related mineralization was characterized by geochemistry and mineral inclusion and microstructure observations, complemented by similar data for potential porphyry and host rock sources. Principal component analysis and clustering of DMt geochemical data resolve multiple populations in our samples geochemically and texturally compatible with derivation from metamorphic, porphyry-related hydrothermal, and igneous sources. Hydrothermal magnetite comprises ∼16–50% of DMt nearest porphyry mineralization but diminishes to ∼4% ∼15 km downstream. Subsampled grains within populations yield ∼160–110 Ma, ∼70 Ma, ∼55 Ma, and ∼20 Ma magnetite He date modes. Combined with provenance, He dates capture Early Cretaceous regional exhumation of metamorphic host rock and Late Cretaceous porphyry Cu mineralization. DMt grains showing partial hematite replacement yield ca. 55–20 Ma dates regardless of source, overlapping regional warm/wet climatic intervals. We interpret Cenozoic dates to reflect exhumation to near-surface oxidizing conditions and(or) supergene weathering. Magnetite is thus a promising target phase for (1) tracking the spatiotemporal distribution of porphyry systems, and (2) linking the formation and exhumation of these systems to a regional geologic history, both in Alaska and globally.

Alaska, Yukon

Engineering and risk research—A strategic vision for extending USGS earthquake science to risk assessment and mitigation

As a part of the U.S. Geological Survey (USGS) Natural Hazards Mission Area, the Engineering and Risk Project (ERP) of the Geologic Hazards Science Center conducts civil engineering research to extend natural hazards science to risk assessments. The ERP includes predominantly, but not exclusively, staff funded by the USGS Earthquake Hazards Program. A major focus of the ERP is to deliver actionable information to decisionmakers that helps promote the safety, security, and economic well-being of the Nation. The report discusses briefly the ERP’s evolution and scope, its organization structure, describes key products and deliverables, their efforts to engage with external partners, and its strategy and vision in conducting range of engineering and risk research. The research topics outlined in this report, as developed by the ERP, may be used to facilitate project planning activities during the next 10 years and serve as a longer-term planning resource for the USGS Earthquake Hazards Program and Geologic Hazards Science Center.

Circular

Earthquake relocations delineate discrete a fault network and deformation corridor throughout Southeast Alaska and Southwest Yukon

Deformation in southeastern Alaska and southwest Yukon is governed by the subduction and translation of the Pacific-Yakutat plates relative to the North American plate in the St. Elias region. Despite notable historical seismicity and major regional faults, studies of the region between the Fairweather and Denali faults are complicated by glacial coverage and the remote setting. In the last decade, significant improvements have been made to the density of regional broadband seismometer networks. We relocate more than 5,000 earthquakes between 2010 and 2021 in the region of southeastern Alaska and southwestern Yukon utilizing these improved seismic networks. With reductions in catalog uncertainty, particularly in depth, we quantify the thickness of the seismogenic layer in the crust throughout the region and locate seismicity on a shallow network of upper-crustal faults. Relocated earthquakes, combined with an updated focal-mechanism catalog, permit estimating and classifying motion of active faults. This includes mapping the Totschunda-Fairweather “Connector” fault, which plays an important role in explaining regional deformation, and identifying new faults like the Kathleen Lake fault. We draw similarities between our seismic observations and simplified conceptual models of regional tectonics, which describe a dominant transpressional regime and localized slip partitioning. Our results support a hypothesis where current deformation is taking place on a well-defined and evolved network of shallow faults in the corridor between the Totschunda-Fairweather “Connector” and Denali faults.

Alaska, Yukon

Water-quality assessment of south-central Texas: Occurrence and distribution of volatile organic compounds in surface water and ground water, 1983-94, and implications for future monitoring

The study area of the South-Central Texas study unit of the National Water-Quality Assessment Program comprises the Edwards aquifer in the San Antonio region and its catchment area. The first phase of the assessment includes evaluation of existing water-quality data for surface water and ground water, including volatile organic compounds, to determine the scope of planned monitoring. Most analyses of volatile organic compounds in surface water are from the National Pollutant Discharge Elimination System sites in San Antonio, Texas. Nine volatile organic compounds were detected at the six sites. The three compounds with the most detections at National Pollutant Discharge Elimination System sites are 1,2,4-trimethylbenzene, toluene, and xylene. Analysis of volatile organic compounds in ground water was limited to Edwards aquifer wells. Twenty-eight volatile organic compounds were detected in samples from 89 wells. The five most commonly detected compounds in samples from wells, in descending order, are tetrachloroethene, trichloroethene, bromoform, chloroform, and dibromochloromethane. Detections of volatile organic compounds in surface water and ground water within the South-Central Texas study area are limited to site-specific sources associated with development; therefore, planned monitoring for possible detections of volatile organic compounds as part of the National Water-Quality Assessment Program will emphasize areas of expanding population and development. Monitoring of volatile organic compounds is planned at National Pollutant Discharge Elimination System sites, at basic fixed surface-water sites, and in the ground-water study-unit surveys.

Texas

Groundwater dependency and hydroclimatic influences on riparian and upland vegetation productivity, Upper San Pedro, Arizona, United States

In arid and semi-arid regions, groundwater sustains vegetation through subsurface water access, yet the responses of groundwater-dependent ecosystems (GDEs) to changing hydroclimate and groundwater availability are relatively understudied. This study investigates seasonal and spatial patterns in vegetation greenness using Landsat Enhanced Vegetation Index (EVI) values across riparian and upland zones in the semi-arid Upper San Pedro (USP) watershed, southern Arizona, which experiences a bimodal precipitation regime. We paired 25 years (2000–2024) of EVI and depth to groundwater (DTG) data from 89 wells and climate metrics (precipitation and vapour pressure deficit) to quantify the sensitivity of vegetation to subsurface moisture as well as atmospheric moisture supply and demand. Vegetation at wells near the USP riparian area showed strong associations between EVI and DTG anomalies during the monsoon season, indicating sustained groundwater use even during this wet period when summer precipitation is abundant. In contrast, upland vegetation that lacked access to groundwater showed minimal sensitivity in EVI to DTG and was generally less responsive to vapour pressure deficit. Interestingly, the riparian GDEs were not decoupled from precipitation and climate variability. These results underscore the importance of groundwater for maintaining riparian productivity and highlight the utility of remote sensing in identifying vegetation-climate-groundwater linkages across heterogeneous dryland landscapes.

Arizona

Groundwater tracing used to delineate recharge areas and map karst groundwater pathways for subterranean streams at Oregon Caves National Monument and Preserve

Oregon Caves National Monument and Preserve in southwestern Oregon is a 4,554-​acre area managed by the National Park Service that is home to several cave systems, including Oregon Caves, which is the longest cave in Oregon, with 3.03 miles of mapped passages. Because of the interconnected nature of karst hydrologic systems, it is critical to understand the areas that can influence water quality and quantity in karst environments. Toward this goal, dye tracing was conducted by the U.S. Geological Survey from 2021 to 2024 to better understand the pathways that karst groundwater follows at Oregon Caves National Monument and Preserve and to delineate recharge areas for two caves, Oregon Caves and Cave Next Door. During the project, eight dye injections were conducted, delineating a 0.51-​square-​mile recharge area for Oregon Caves and a 0.69-​square-​mile recharge area for Cave Next Door. Additionally, the study helped to identify three resurgences associated with Oregon Caves that were previously unknown and showed that the recharge areas for the two caves were distinct from one another. The dye traces also illuminated some unique recharge characteristics of the karst at Oregon Caves, including a high variance in karst groundwater velocities, retention within the karst aquifers, and a significant diffuse-​flow component.

Oregon

Groundwater and surface-water interactions in the Waihe‘e-Kahalu‘u watershed, O‘ahu, Hawai‘i—Analysis of historical data and numerical groundwater-model simulations

The Waihe‘e-Kahaluʻu watershed and surrounding areas lie in a dike-impounded groundwater setting of the Ko‘olau Range, O‘ahu, Hawai‘i, where groundwater withdrawal from wells and tunnels have resulted in reductions in streamflow. Resource managers and surface-water users seek information that can be used to balance the needs of competing uses of groundwater and streamflow in the watershed. This study assesses the effects of four groundwater developments in the Waihe‘e-Kahalu‘u watershed—Kahaluu Tunnel, Waihee Tunnel, Kahaluu Well, and Waihee Incline Wells—on Kahalu‘u and Waihe‘e Streams. Analyses of historical streamflow, withdrawal, and rainfall data indicate that base flow (the component of streamflow that is supplied from groundwater discharge) in Kahalu‘u and Waihe‘e Streams decreased in response to withdrawals from wells and tunnels within and outside the watershed. Groundwater-model simulations indicate that shutdown of selected tunnels and wells in the Waihe‘e-Kahaluʻu watershed will result in increases of groundwater discharge, but not all of the increase will occur in streams within the watershed; increases will also occur in streams outside the basin, the ocean, and tunnels other than those that were shut down. The analysis of historical data and model simulations is consistent in showing that the effects of withdrawal changes on streams are not constrained by the topographic boundaries of watersheds. Stream base flows in the Waihe‘e-Kahalu‘u watershed are subject to a complex interaction of multiple withdrawals from wells and tunnels installed at various times within and outside the watershed. The correspondence between withdrawals and base-flow changes is consistent with the conceptual model and understanding of the connection between groundwater and streamflow in the dike-impounded groundwater setting of the Waihe‘e-Kahalu‘u watershed and the Ko‘olau Range.

Hawaii

Geochemistry of and radioactivity in ground water of the Highland Rim and Central Basin aquifer systems, Hickman and Maury counties, Tennessee

A reconnaissance of the geochemistry of and radioactivity in ground water from the Highland Rim and Central Basin aquifer systems in Hickman and Maury Counties, Tennessee, was conducted in 1989. Water in both aquifer systems typically is of the calcium or calcium magnesium bicarbonate type, but concentrations of calcium, magnesium, sodium, potassium, chloride, and sulfate are greater in water of the Central Basin system; differences in the concentrations are statistically significant. Dissolution of calcite, magnesium-calcite, dolomite, and gypsum are the primary geochemical processes controlling ground-water chemistry in both aquifer systems. Saturation-state calculations using the computer code WATEQF indicated that ground water from the Central Basin system is more saturated with respect to calcite, dolomite, and gypsum than water from the Highland Rim system. Geochemical environments within each aquifer system are somewhat different with respect to dissolution of magnesium-bearing minerals. Water samples from the Highland Rim system had a fairly constant calcium to magnesium molar ratio, implying congruent dissolution of magnesium-bearing minerals, whereas water samples from the Central Basin system had highly variable ratios, implying either incongruent dissolution or heterogeneity in soluble constituents of the aquifer matrix. Concentrations of radionuclides in water were low and not greatly different between aquifer systems. Median gross alpha activities were 0.54 picocuries per liter in water from each system; median gross beta activities were 1.1 and 2.3 picocuries per liter in water from the Highland Rim and Central Basin systems, respectively. Radon-222 concentrations were 559 and 422 picocuries per liter, respectively. Concentrations of gross alpha and radium in all samples were substantially less than Tennessee’s maximum permissible levels for community water-supply systems. The data indicated no relations between concentrations of dissolved radionuclides (uranium, radium-226, radium-228, radon-222, gross alpha, and gross beta) and any key indicators of water chemistry, except in water from the Highland Rim system, in which radon-222 was moderately related to pH and weakly related to dissolved magnesium. The only relation among radiochemical constituents indicated by the data was between radium-226 and gross alpha activity; this relation was indicated for water from both aquifer systems.

Tennessee

Developing international standards and guidelines for disseminating and validating simulated ground motions

We are leading an effort to develop international standards and guidelines for curating, disseminating, and validating simulated ground-motion data. This effort is organized as a working group within the Consortium of Organizations for Strong Motion Observation Systems (COSMOS). In 2022 we held online workshops on 7 and 8 June and 20 October. The first workshop focused on curating and disseminating simulated ground-motion data. The second workshop focused on validating simulated ground-motions for engineering applications. About 100 people participated in each of the workshops with strong representation from North America, Europe, and western Asia. In the coming year, we intend to form a technical committee to draft the international guidelines and standards while continuing to engage stakeholders from across the globe through online and in-person meetings. The key points from the workshops include: (1) Numerous groups are generating simulated earthquake ground motions and making them openly available; however there is very little coordination among groups to provide consistent interfaces for searching and retrieving data; (2) Standardizing interfaces for metadata and data access should consider agile approaches that can adapt to changing capabilities and user needs while building upon existing efforts; (3) A distributed architecture is preferred by most participants to allow institutions to host and manage their own data while broadcasting their holdings to a combined catalog; (4) Validation of ground-motion simulations applies to the entire workflow for simulating earthquake ground-motions, including the rupture model, seismic velocity model, and seismic wave propagation software; (5) Metrics to evaluate the validation are application dependent; more research is needed to tie structural response characteristics to ground-motion characteristics; and (6) Validation results should provide a clear, transparent, and quantitative assessment of the simulated ground motions.

Conference Paper

Decadal trends and occurrence of geogenic constituents and mixtures in groundwater across the continental United States

Worldwide, about 50% of the population is served by groundwater-sourced drinking water. Numerous groundwater quality assessments have found that geogenic constituents are among the most common contaminants in drinking-water aquifers. Documenting changing groundwater quality is a crucial aspect of water availability assessments. We assess trends and occurrence of geogenic constituent concentrations in groundwater across the continental United States using 3 decades of data from the U.S. Geological Survey’s National Water Quality Network. Thousands of groundwater wells were grouped into agricultural, urban, or domestic supply network types. Although most networks and constituents had no statistically significant change in concentration, many had increasing concentration trends, elevated concentrations, or both. Lithium, sodium, radium, sulfate, and uranium had increasing trends in more than 10% of the study networks. Urban and domestic well networks had increasing lithium and sodium trends more often than agricultural networks. Manganese most commonly increased in domestic well networks; uranium more commonly increased in agricultural and urban networks. Elevated concentration mixtures were widespread, and mixture complexities appeared to increase over time. Our results indicate that more than 2.3 million domestic-well users may be affected by elevated concentrations of one or more geogenic constituents.

continental United States

Reference 1D seismic velocity models for volcano monitoring and imaging: Methods, models, and applications

Seismic velocity models of the crust are an integral part of earthquake monitoring systems at volcanoes. 1D models that vary only in depth are typically used for real‐time hypocenter determination and serve as critical reference models for detailed 3D imaging studies and geomechanical modeling. Such models are usually computed using seismic tomographic methods that rely on P ‐ and S ‐wave arrival‐time picks from numerous earthquakes recorded at receivers around the volcano. Traditional linearized tomographic methods that jointly invert for source locations, velocity structure, and station corrections depend critically on having reasonable starting values for the unknown parameters, are susceptible to local misfit minima and divergence, and often do not provide adequate uncertainty information. These issues are often exacerbated by sparse seismic networks, inadequate distributions of seismicity, and/or poor data quality common at volcanoes. In contrast, modern probabilistic global search methods avoid these issues only at the cost of increased computation time. In this article, we review both approaches and present example applications and comparisons at several volcanoes in the United States, including Mount Hood (Oregon), Mount St. Helens (Washington), the Island of Hawai’i, and Mount Cleveland (Alaska). We provide guidance on the proper usage of these methods as relevant to challenges specific to volcano monitoring and imaging. Finally, we survey‐published 1D P ‐wave velocity models from around the world and use them to derive a generic stratovolcano velocity model, which serves as a useful reference model for comparison and when local velocity information is sparse.

Seismological Research Letters

Cultural benefits knowledge and social learning in Elwha River dam removal and ecosystem decision-making

In a retrospective case study of the seminal Elwha River dam removal in Washington State, USA, we explore pathways through which ecosystem services (ES) knowledge can inform environmental decision-making. We specifically investigate how knowledge of cultural benefits linked to the Elwha River ecosystem was made available. Through interviews and historical document review we identify diverse forms of cultural benefits knowledge (i.e., how individuals or groups know the contributions of an ecosystem to their identities, experiences, and capabilities), including both knowledge in the form of practices – embodied or enacted forms of knowledge, and knowledge in the form of products – quantitative or written documentation. Recognizing and learning from the diverse forms in which benefits knowledges are conveyed can support more accurate and equitable consideration of the diverse values, well-beings, and human-nature relationships linked to ecosystems. With this case study, we illuminate pathways for meaningful consideration of multiple knowledge forms, and the plural ecosystem values they convey, with relevance for environmental decision processes in the Puget Sound and beyond.

Washington