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At least 397 records · Page 22Linked to original sources
USGS2016

Experimental infection of six North American fish species with the North Carolina strain of spring Viremia of Carp Virus

Spring viremia of carp virus (SVCV) is a rhabdoviral pathogen associated with disease outbreaks in cultured and wild fish worldwide. Common carp ( Cyprinus carpio carp ), and koi ( C. carpio koi ) suffer the highest mortalities from SVCV infections, while other cyprinid fish species have varying susceptibility. Although salmonid fish typically are considered refractory to infection by SVCV, there have been a few reports suggesting infection has occurred in rainbow trout ( Oncorhynchus mykiss ). There have been no reports of Percid fish being infected with SVCV. Since the first North American outbreak of SVCV at a North Carolina koi farm in 2002 there have been eight subsequent detections or outbreaks of SVCV among fish species from the families of Cyprinidae and Centrarchidae within the US and Canada. Thus, this exotic virus is considered a potential threat to native and cultured fish populations in North America. We performed multiple experimental challenges with fish species from three families ( Salmonidae , Cyprinidae , and Percidae ) to identify the potential risk associated with SVCV exposure of resident fish populations in North America. Three salmonid species, rainbow and steelhead trout ( Oncorhynchus mykiss ), Chinook salmon ( O. tshawytscha ), and sockeye salmon ( O. nerka ), were challenged by immersion or injection with the North Carolina SVCV isolate. Two cyprinid species, koi and fathead minnow ( Pimephales promelas ) and one percid species, yellow perch ( Perca flavescens ) were also challenged. Koi were highly susceptible to SVCV up to 11 months of age and fathead minnows had chronic disease expression with moderate mortality (29%). SVCV also induced moderate mortalities (33%) in yellow perch fry. Virus challenged salmonid fish had cumulative percent mortalities ranging from 0 to 100%, with sockeye salmon fry being the most vulnerable. A sub-sample of mortalities and survivors were screened for virus by plaque assay and reverse transcription polymerase chain reaction. In general, all mortalities tested positive for SVCV with high viral titers while survivors had variable persistence of SVCV with overall lower virus titers. Our SVCV challenges of multiple North American fish species suggested that host age is a key factor in determining disease outcome. Other factors, such as fish broodstock, virus strain, water temperature, and rearing conditions in association with the intrinsic level of species susceptibility may also impact infection dynamics. This is the first report of SVCV infecting a species (yellow perch) in the family Percidae and that sockeye salmon fry can suffer similarly high mortalities as the primary SVCV host species.

Aquaculture↗
USGS2023

Characterization of maternal immunity following vaccination of broodstock against IHNV or Flavobacterium psychrophilum in rainbow trout (Oncorhynchus mykiss)

Infectious hematopoietic necrosis (IHN) is a significant viral disease affecting salmonids, whereas Flavobacterium psychrophilum (Fp), the causative agent of bacterial coldwater disease (BCWD), remains one of the most significant bacterial pathogens of salmonids. We explored maternal immunity in the context of IHN and BCWD management in rainbow trout ( Oncorhynchus mykiss ) aquaculture. Two experimental trials were conducted where different groups of female broodstock were immunized prior to spawning with an IHNV DNA vaccine or a live attenuated F. psychrophilum (Fp B.17-ILM) vaccine alone, or in combination. Progeny were challenged with either a low or high dose of IHNV at 13 days post hatch (dph) and 32 dph or challenged with F. psychrophilum at 13 dph. Mortality following a low-dose IHNV challenge at 13 dph was significantly lower in progeny from vaccinated broodstock vs. unvaccinated broodstock, but no significant differences were observed at 32 dph. Mortality due to BCWD was also significantly reduced in 13 dph fry that originated from broodstock immunized with the Fp B.17-ILM vaccine. After vaccination broodstock developed specific or neutralizing antibodies respectively to F. psychrophilum and IHNV; however, antibody titers in eggs and fry were undetectable. In the eggs and fry mRNA transcripts of the complement components C3 and C5 were detected at much higher levels in progeny from vaccinated broodstock and showed a significantly increased and rapid response post-challenge compared with unvaccinated broodstock. After challenges pro-inflammatory cytokine expression was immediately and considerably elevated in the fry from vaccinated broodstock vs. unvaccinated broodstock, whereas adaptive immune genes were elevated to a lesser degree. Results suggest that maternal transfer of innate and adaptive factors at the transcript level occurred because development of lymphomyeloid organs is not complete in such young fry. In addition to documenting maternally derived immunity in teleosts, this study demonstrates that broodstock vaccination can confer some degree of protection to progeny against viral and bacterial pathogens.

Fish and Shellfish Immunology↗
USGS2019

Reimagining the potential of Earth observations for ecosystem service assessments

The benefits nature provides to people, called ecosystem services, are increasingly recognized and accounted for in assessments of infrastructure development, agricultural management , conservation prioritization, and sustainable sourcing. These assessments are often limited by data, however, a gap with tremendous potential to be filled through Earth observations (EO), which produce a variety of data across spatial and temporal extents and resolutions. Despite widespread recognition of this potential, in practice few ecosystem service studies use EO. Here, we identify challenges and opportunities to using EO in ecosystem service modeling and assessment. Some challenges are technical, related to data awareness, processing, and access. These challenges require systematic investment in model platforms and data management. Other challenges are more conceptual but still systemic; they are byproducts of the structure of existing ecosystem service models and addressing them requires scientific investment in solutions and tools applicable to a wide range of models and approaches. We also highlight new ways in which EO can be leveraged for ecosystem service assessments, identifying promising new areas of research. More widespread use of EO for ecosystem service assessment will only be achieved if all of these types of challenges are addressed. This will require non-traditional funding and partnering opportunities from private and public agencies to promote data exploration, sharing, and archiving. Investing in this integration will be reflected in better and more accurate ecosystem service assessments worldwide.

Science of the Total Environment↗
USGS1979

Immersion vaccination of sockeye salmon (Oncorhynchus nerka) with two pathogenic strains of Vibrio anguillarum

Sockeye salmon ( Oncorhynchus nerka ) were immersion-vaccinated in suspensions containing 5 × 10 7 , 5 × 10 6 , 5 × 10 5 , or 5 × 10 4 bacteria/mL of bivalent or monovalent, formalin-killed Vibrio anguillarum , Types I and II. The fish were split into two lots and held for 54 d. At that time one lot was challenged with living, virulent V . anguillarum , Type I, and one with living, virulent V . anguillarum , Type II. Immunization with bivalent bacterin effectively protected the fish from vibriosis, but monovalent vaccine was effective only against the homologous challenge. Immunization with the highest concentration of Type I monovalent bacterin resulted in 0% Type I and 58% Type II challenge mortality. Immunization with the highest concentration of Type II monovalent bacterin resulted in 41% Type I and 0% Type II challenge mortality. Immunization with the highest concentration of bivalent Type I/Type II bacterin resulted in 2% mortality in both challenges. Protective bacterins were effective at concentrations down to 5 × 10 5 bacteria/mL. Key words : immersion vaccination, bivalent vaccines, Vibrio anguillarum , vibriosis.

Journal of the Fisheries Research Board of Canada↗
USGS2026

Harmonization of aggregated freshwater biotic data to support continental and global assessment

Biodiversity loss and conservation are increasingly coming into focus in global policy fora, requiring information and assessments at wider spatial and temporal scales than previously considered. However, the monitoring framework required to support such data collection and assessment is lacking in many countries and is not harmonized across countries, hampering these efforts. Aggregation of existing freshwater data offers a solution to the problem of assessing status and trends of ecosystems and biodiversity at large spatial scales in the absence of nationally coordinated monitoring efforts. Analysis of aggregated data from different sources, collected using different protocols and with varying levels of metadata and supporting data, can be challenging and requires decisions regarding data comparability. In this paper, we identify the challenges inherent in harmonizing aggregated freshwater data for analysis, including general concerns related to research goals, spatial and temporal scale, sample selection, sampling effort, and site integrity. We also discuss the challenges related to measured parameters, sampled habitats, sample collection and processing methods, and data integrity for phytoplankton, benthic algae, macrophytes, zooplankton, benthic macroinvertebrates, fish, and supporting variables such as water and sediment chemistry. We provide a workflow to evaluate each of these challenges and make decisions about how best to work with the data. Finally, we review a case study from a large-scale analysis of freshwater data from the circumpolar Arctic region that exemplifies the encountered challenges and the chosen solutions. Through the description of the case study, we provide practical solutions to support aggregation and analysis of existing freshwater data. As global conversations about biodiversity status and trends continue, the demand for large-scale analyses of data from different sources will only grow. In the absence of globally harmonized monitoring, we are faced with the need to ensure comparability of data, making expert judgements where needed to support sound conclusions.

PLOS Water↗
USGS2022

Use case development for earth monitoring, analysis, and prediction (EarthMAP)—A road map for future integrated predictive science at the U.S. Geological Survey

Executive Summary The U.S. Geological Survey (USGS) 21st-century science strategy 2020–30 promotes a bureau-wide strategy to develop and deliver an integrated, predictive science capability that works at the scales and timelines needed to inform societally relevant resource management and protection and public safety and environmental health decisions (U.S. Geological Survey, 2021). This is the overarching goal of the USGS Earth Monitoring, Analysis, and Prediction (EarthMAP) vision, which consists of three components: (1) integrated data and information, (2) integrated predictive science, and (3) actionable information—all designed and delivered to respond to user needs. To launch this vision and help shape the design and implementation of integrated predictive science, the USGS Regional Offices each developed a set of use cases (hereafter Use Cases)—short descriptions of potential science applications that could clearly address high priority decision-making needs of our stakeholders and that align with an integrated science focus. Use Cases are not actionable science planning documents, nor stand-alone scholarly works, but should be considered as innovative, next-generation science ideas that can be considered as potential components of science plans still under development. The goal of Use Case development was to (1) identify and characterize existing USGS scientific capacities and expertise that can support science goals and products, (2) identify opportunities to leverage current capacities for next-generation science, and (3) foster engagement across the entire Bureau to further refine the USGS strategy for EarthMAP and integrated predictive science. The Use Case development effort documented in this report was coordinated by the Use Case Development Team (UCDT), consisting of representatives from each region. The UCDT undertook five tasks: (1) develop a unified approach to engage bureau scientists consistently across all regions in aspirational thinking about what can be accomplished; (2) work with the regions and their Science Centers to generate an initial set of Use Cases, authored directly by scientists; (3) characterize, summarize, and document the initial set of Use Case submissions from authors to illuminate bureau-level demand for integrated science; (4) compare existing and needed capacities from the Use Case descriptions with preliminary results of the EarthMAP Capacity Assessment (Keisman and others, 2021); and (5) describe lessons learned from the Use Case development process and provide recommendations to inform future efforts to generate integrated science activities. This report outlines the approach the UCDT developed to solicit Use Cases from the regions and summarizes the high-level qualitative findings from this first-round effort. The UCDT received 36 Use Cases from the regions and identified potential points of convergence and commonalities considered useful in making connections among the participating scientists. The Southwest (SW) Region and the Rocky Mountain (RM) Region asked scientists to give special consideration to Use Cases with applicability to the Colorado River Basin, and seven of the Use Cases specifically named that geographic area as a focus. Coastal hazards and coastal resilience were identified in Use Cases from the Alaska (AK), Northeast (NE), and Southeast (SE) Regions. Aspects of wildfire and post-wildfire response were part of Uses Cases from AK, RM, and SW Regions. The greatest convergence of Use Case themes was related to conservation of public lands and waters, which is a powerful linkage lending strength to future collaborative efforts. The most common type of stakeholder decisions that would be informed by the Use Case science applications were related to adaptation, mitigation, and response (for example, how to increase the resilience of coastal communities to climate-related stressors and how to prevent or respond to harmful algal blooms). Other common types of decisions included water and land management decisions (including operational water management decisions such as reservoir operations and land use planning in the sagebrush biome), decisions about how to manage and conserve habitats and species, and risk management decisions (such as managing the post-wildfire flood risks). These decision types are not exclusive because many Use Cases cross categories. Use Case authors identified existing and needed science and technology capabilities required for Use Case implementation, which were then aligned to capabilities assessed in the EarthMAP Capacity Assessment (Keisman and others, 2021). Strong alignment was found for data and information integration approaches, modeling and prediction approaches, and capabilities related to delivery of actionable information. A majority of Use Cases indicated insufficient current capacity for needed data collection methods, data integration, and modeling and prediction approaches, whereas only 25 percent indicated insufficient capacity for actionable information delivery. Overall, many Use Case capacity demand gaps could potentially be met by existing bureau-wide capacity. In addition, nearly half of the Use Cases could potentially be implemented within 3 years if funding, capabilities, and personnel impediments were removed and science priorities were realigned. Several challenges emerged during the Use Case development process. The first challenge was developing an approach that was flexible enough to accommodate regional differences in planning and implementation, while also ensuring enough guidance to promote meaningful summary analyses. The UCDT encountered a strong demand for continuous communication and education to improve overall understanding of the integrated predictive science strategy. Another challenge was managing expectations about EarthMAP activities as a design effort that was not aligned to an immediate funding opportunity. Connecting the Use Cases to stakeholder needs without the opportunity for direct stakeholder engagement was also challenging. The last notable challenge was in obtaining consistent interpretation and characterization of the qualitative data housed in the narrative descriptions of Use Cases, written in different styles. Overall, the 36 Use Cases can serve as components of a road map for advancing integrated monitoring and predictive science throughout the USGS by revealing opportunities to (1) encourage cross-region initiatives that address shared interests in common themes by integrating similar Use Cases and through direct involvement of stakeholders in identifying needs and designing effective responses, (2) leverage the Use Cases to target investments that are aligned with the Bureau and Department of the Interior (DOI) priorities, (3) connect Use Cases and the results of the companion EarthMAP Capacity Assessment (Keisman and others, 2021) to identify potential priorities for capacity building investments, and (4) raise awareness of common integrated and interdisciplinary science interests within and across the regions through Use Case and Capacity Assessment summary outreach activities.

Open-File Report↗
USGS2005

Efficacy of an infectious hematopoietic necrosis (IHN) virus DNA vaccine in Chinook Oncorhynchus tshawytscha and sockeye O. nerka salmon

The level of protective immunity was determined for Chinook Oncorhynchus tshawytscha and sockeye/kokanee salmon (anadromous and landlocked) O. nerka following intramuscular vaccination with a DNA vaccine against the aquatic rhabdovirus, infectious hematopoietic necrosis virus (IHNV). A DNA vaccine containing the glycoprotein gene of IHNV protected Chinook and sockeye/kokanee salmon against waterborne or injection challenge with IHNV, and relative percent survival (RPS) values of 23 to 86% were obtained under a variety of lethal challenge conditions. Although this is significant protection, it is less than RPS values obtained in previous studies with rainbow trout (O. mykiss). In addition to the variability in the severity of the challenge and inherent host susceptibility differences, it appears that use of a cross-genogroup challenge virus strain may lead to reduced efficacy of the DNA vaccine. Neutralizing antibody titers were detected in both Chinook and sockeye that had been vaccinated with 1.0 and 0.1 ??g doses of the DNA vaccine, and vaccinated fish responded to viral challenges with higher antibody titers than mock-vaccinated control fish. ?? Inter-Research 2005.

Diseases of Aquatic Organisms↗
USGS2019

Monitoring boreal avian populations: How can we estimate trends and trajectories from noisy data?

Substantial effort has been dedicated to developing reliable monitoring schemes for North American bird populations, but our ability to monitor bird populations in the boreal forest remains limited because of the sparsity of long-term data sets, particularly in northerly regions. Given the importance of the boreal forest for many migratory birds, we set out to (1) summarize the main challenges associated with monitoring avian populations, (2) describe the available statistical tools for population monitoring and their applications, and (3) identify future directions to overcome current challenges in monitoring bird populations in the boreal forest. Defining and delineating populations of interest and identifying the drivers that affect those populations present the greatest current challenges. This is because migratory birds may be affected by many population-limiting processes at different stages of their annual life cycles. These factors are often hierarchically structured and can influence populations at the local, regional, or continental scales. Some of the challenges associated with delineating populations and identifying population drivers can be addressed via the plethora of sampling and analytic methods available to examine population change over time. Choosing the proper analytic methods depends on the goals of the study and the nature of the data such as single or multiple populations, repeated occurrence or count-based surveys, or demographic rates. Recent advances in hierarchical and integrated population models make these analytic approaches some of the most promising avenues for the development of future methods. However, these tools require large data sets, and acquiring sufficient data on bird populations and potential explanatory variables is difficult in the boreal forest. If the current challenges to monitoring birds in the boreal forest are to be overcome, serious effort should be dedicated to integrating existing data and making them accessible. Enhancing survey effort through multispecies surveys will also play an important role. Implementing spatially balanced sampling plans with a rotating panel design could balance the trade-offs between spatial versus temporal replication at an affordable cost. Improving the accessibility of environmental covariates that are spatially and temporally explicit would also enable development of mechanistic population models that improve our understanding of migratory bird population dynamics. Finally, given that long-term monitoring programs can take many decades before delivering reliable population trends and that organizational priorities often change over time, we suggest that collaborative efforts will help ensure the long-term survival of new monitoring programs.

Avian Conservation and Ecology↗
USGS2001

Susceptibility of the Siberian polecat to subcutaneous and oral Yersinia pestis exposure

To determine if the Siberian polecat ( Mustela eversmannii ) represents a suitable model for the study of plague pathogenesis and prevention in the black-footed ferret ( Mustela nigripes ), polecats were exposed to 10 3 , 10 7 , or 10 10 Yersinia pestis organisms by subcutaneous injection; an additional group was exposed to Y. pestis via ingestion of a plague-killed mouse. Plague killed 88% of polecats exposed to Y. pestis (71% mortality in the 10 3 group, 100% mortality in the 10 7 and 10 10 groups, and 83% mortality in the mouse-fed group). Within the challenged group, mean day of death post-challenge ranged from 3.6 to 7.6 days; all polecats died on or before day 12 post-challenge. Animals receiving the lowest parenteral dose survived significantly longer than those receiving higher parenteral doses. Within challenged animals, mean survival time was lower in those presenting with significant weight loss by day 3, lethargy, and low fecal output; time to onset of lethargy and other signs was also related to risk of dying and/or plague dose. Six polecats developed serum antibody titers to the Y. pestis F1 protein. Three seropositive polecats survived the initial challenge and a subsequent exposure to a plague-killed mouse, while two seropositive animals later died. This study confirms that the Siberian polecat is susceptible to plague and suggests that this species will offer an appropriate surrogate for black-footed ferrets in future plague studies and related vaccine trials.

Journal of Wildlife Diseases↗
USGS2010

Considering native and exotic terrestrial reptiles in island invasive species eradication programmes in the Tropical Pacific

Most island restoration projects with reptiles, either as direct beneficiaries of conservation or as indicators of recovery responses, have been on temperate or xeric islands. There have been decades of research, particularly on temperate islands in New Zealand, on the responses of native reptiles to mammal eradications but very few studies in tropical insular systems. Recent increases in restoration projects involving feral mammal eradications in the tropical Pacific have led to several specific challenges related to native and invasive reptiles. This paper reviews these challenges and discusses some potential solutions to them. The first challenge is that the tropical Pacific herpetofauna is still being discovered, described and understood. There is thus incomplete knowledge of how eradication activities may affect these faunas and the potential risks facing critical populations of these species from these eradication actions. The long term benefit of the removal of invasives is beneficial, but the possible short term impacts to small populations on small islands might be significant. The second challenge is that protocols for monitoring the responses of these species are not well documented but are often different from those used in temperate or xeric habitats. Lizard monitoring techniques used in the tropical Pacific are discussed. The third challenge involves invasive reptiles already in the tropical Pacific, some of which could easily spread accidentally through eradication and monitoring operations. The species posing the greatest threats in this respect are reviewed, and recommendations for biosecurity concerning these taxa are made.

Conference Paper↗
USGS2021

Managing wildlife at landscape scales

Managing wildlife populations on a landscape is not a new concept to the field of wildlife management. However, a variety of barriers exist to effectively manage wildlife species at landscape scales. For example, competing management objectives for the same population can occur in parts of two adjoining states and 3-4 agencies within a single state may be charged with managing the habitat on which that population depends at varying spatial scales. Moreover, most state and federal agencies have different mandates and implement management actions out of offices that have static administrative or jurisdictional boundaries. Hence, implementing management actions across relatively large spatial extents can be difficult because one manager or one agency field office may have little or no input on the management of habitats or populations for which they do not have administrative responsibility. In contrast, landscape ecologists often focus on actions that ignore those same logistical hurdles. Landscape ecologists and wildlife managers should be aware of such barriers and incorporate these unique challenges and constraints into their research questions, proposed management actions, and policies. Our goal is to identify challenges, constraints, and opportunities to managing wildlife populations at a landscape scale and describe how resource agencies and landscape ecologists can work collaboratively to overcome challenges and constraints. We also explore the potential management challenges created by continuing to manage wildlife populations and habitats based on local-scale approaches to management and decision making. Finally, we provide a case study using the greater sage-grouse as an example of challenges and constraints to managing a species at a landscape scale.

Book chapter↗
USGS2022

Evaluation of Francisella orientalis ΔpdpA as a live attenuated vaccine against piscine Francisellosis in Nile tilapia

Francisella orientalis is an important bacterial pathogen of marine and freshwater fish with worldwide distribution. Fish francisellosis is a severe subacute to chronic granulomatous disease, with high mortalities and high infectivity rates in cultured and wild fish. To date, there is no approved vaccine for this disease. In this study, we evaluated the efficacy of a defined F. orientalis pathogenicity determinant protein A ( pdpA ) mutant (Δ pdpA ) as a live attenuated immersion vaccine against subsequent immersion challenge with the wild-type organism. Immunized Nile tilapia Oreochromis niloticus were protected (45% relative percent survival) from the lethal challenges and presented significantly lower mortality than nonvaccinated and challenged treatments. Although serum IgM was significantly higher in immunized fish, similar bacterial loads were detected in vaccinated and nonvaccinated survivors. In conclusion, although the F. orientalis Δ pdpA is attenuated and effectively stimulated an adaptive immune response, the low relative percent survival and high bacterial persistence in survivors of immunized and challenged treatments indicates low suitability of Δ pdpA as a mucosal vaccine for tilapia under conditions used in this study.

Journal of Aquatic Animal Health↗
USGS2026

Genomic selection for low salinity tolerance in the eastern oyster Crassostrea virginica in Louisiana and Chesapeake Bay populations

The use of genomic selection (GS) to improve traits of interest in aquaculture species is growing with the availability of genomic resources for those species. The eastern oyster , Crassostrea virginica , is a major aquaculture product and keystone species along the U.S. mid-Atlantic and Gulf coasts. Populations and production of C. virginica are threatened by several environmental stressors, and in certain coastal regions, episodic low salinity conditions have contributed to mass mortality events. Here we examined the potential for genomic selection to improve tolerance to extreme low salinity (≤ 2) in eastern oysters and report the evaluation of GS models for C. virginica from two regions- Louisiana and Chesapeake Bay. Tissue samples from both mortalities and survivors of the lab-based salinity challenges (salinity 2, 28 °C) were genotyped on the 66 K C. virginica SNP array. We performed a genome wide association study (GWAS) for both challenges and then evaluated the effects of several different parameters on GS prediction accuracy, including model type (GBLUP, Bayesian, and weighted), data filtering, Bayesian modelling parameters, and trait encoding (Gaussian, ordinal, and censored). GWAS revealed a significant region on chromosome 1 in the Chesapeake animals while the Louisiana animals showed only a few significantly associated loci. GS model type had no significant impact on prediction accuracy in the Chesapeake animals, but a large impact in the Louisiana animals. Likewise, prediction accuracy remained consistent in the Chesapeake Bay challenge with as few as 5000 markers, while accuracy in the Louisiana challenge began to decline with fewer than 25,000 markers. This likely reflects the lower relatedness among the Louisiana individuals due to unintended wild overset. Overall, with moderate prediction accuracies (∼0.45–0.55) in both regions, GS shows the potential to improve low salinity tolerance in eastern oysters. This will be beneficial to selective breeding programs and restoration efforts in regions where this trait improves oyster survival.

Louisiana, Maryland, Virginia↗
USGS2007

Effects of hexazinone and atrazine on the physiology and endocrinology of smolt development in Atlantic salmon

Exposure to hexazinone (HEX) and atrazine (ATZ), highly mobile and widely used herbicides along rivers in the United States, is potentially harmful to Atlantic salmon, which have been listed as an endangered species. To determine the effects of these contaminants on smolt development, juvenile Atlantic salmon were exposed under flow-through conditions to 100 μg l −1 HEX, 10 and 100 μg l −1 ATZ in fresh water (FW) for 21 days at 10 °C beginning in mid-April. Twelve fish per treatment were sampled in FW, following a 24 h seawater (SW) challenge and after growth for 3 months in SW. Exposure to 100 μg l −1 HEX or 10 μg l −1 ATZ caused no mortalities of smolts in FW or after SW challenge, while 9% of the fish exposed to 100 μg l −1 ATZ died during exposure. Fish exposed to 100 μg l −1 ATZ reduced feeding after 10 days of exposure and had an impaired growth rate in FW and during the first month in SW; compensatory growth occurred in the second and third month in SW. HEX and ATZ at 10 μg l −1 exposure had no effect on plasma levels of cortisol, growth hormone (GH), insulin growth factor I (IGF-I), thyroxine (T 4 ) and plasma 3,5,3′-triiodo- l -thyronine (T 3 ), Cl − , Mg 2+ , Na + , Ca 2+ in FW or after SW challenge. FW smolts exposed to 100 μg l −1 ATZ had decreased plasma Cl − , Mg 2+ , Na + and Ca 2+ ions and increased cortisol. No effect on plasma levels of GH, IGF-I, T 4 or T 3 was found in FW smolts exposed to 100 μg l −1 ATZ. Following SW challenge, fish previously exposed to 100 μg l −1 ATZ had significant increases in hematocrit, plasma cortisol, Cl − , Mg 2+ , Na + , Ca 2+ and a decrease in T 4 and T 3 . It is concluded that under the conditions imposed in this study, HEX does not affect salinity tolerance of Atlantic salmon smolts, while ATZ causes ionoregulatory, growth and endocrine disturbance.

Aquatic Toxicology↗
USGS2015

Markov decision processes in natural resources management: observability and uncertainty

The breadth and complexity of stochastic decision processes in natural resources presents a challenge to analysts who need to understand and use these approaches. The objective of this paper is to describe a class of decision processes that are germane to natural resources conservation and management, namely Markov decision processes, and to discuss applications and computing algorithms under different conditions of observability and uncertainty. A number of important similarities are developed in the framing and evaluation of different decision processes, which can be useful in their applications in natural resources management. The challenges attendant to partial observability are highlighted, and possible approaches for dealing with it are discussed.

Ecological Modelling↗
USGS2010

Early viral replication and induced or constitutive immunity in rainbow trout families with differential resistance to Infectious hematopoietic necrosis virus (IHNV)

The main objective of this study was to assess correlates of innate resistance in rainbow trout full-sibling families that differ in susceptibility to Infectious hematopoietic necrosis virus (IHNV). As part of a commercial breeding program, full-sibling families were challenged with IHNV by waterborne exposure at the 1 g size to determine susceptibility to IHNV. Progeny from select families (N = 7 families) that varied in susceptibility (ranging from 32 to 90% cumulative percent mortality (CPM)) were challenged again at the 10 g size by intra-peritoneal injection and overall mortality, early viral replication and immune responses were evaluated. Mortality challenges included 20–40 fish per family while viral replication and immune response studies included 6 fish per family at each time point (24, 48 and 72 h post-infection (hpi)). CPM at the 1 g size was significantly correlated with CPM at the 10 g size, indicating that inherent resistance was a stable trait irrespective of size. In the larger fish, viral load was measured by quantitative reverse-transcriptase PCR in the anterior kidney and was a significant predictor of family disease outcome at 48 hpi. Type I interferon (IFN) transcript levels were significantly correlated with an individual's viral load at 48 and 72 hpi, while type II IFN gene expression was significantly correlated with an individual's viral load at 24 and 48 hpi. Mean family type I but not type II IFN gene expression was weakly associated with susceptibility at 72 hpi. There was no association between mean family susceptibility and the constitutive expression of a range of innate immune genes (e.g. type I and II IFN pathway genes, cytokine and viral recognition receptor genes). The majority of survivors from the challenge had detectable serum neutralizing antibody titers but no trend was observed among families. This result suggests that even the most resistant families experienced sufficient levels of viral replication to trigger specific immunity. In summary, disease outcome for each family was determined very early in the infection process and resistance was associated with lower early viral replication.

Fish and Shellfish Immunology↗
USGS2023

Stakeholder attitudes and perspectives on wildlife disease surveillance as a component of a One Health approach in Thailand

Coordinated wildlife disease surveillance (WDS) can help professionals across disciplines effectively safeguard human, animal, and environmental health. The aims of this study were to understand how WDS in Thailand is utilized, valued, and can be improved within a One Health framework. An online questionnaire was distributed to 183 professionals (55.7% response rate) across Thailand working in wildlife, marine animal, livestock, domestic animal, zoo animal, environmental, and public health sectors. Twelve semi-structured interviews with key professionals were then performed. Three-quarters of survey respondents reported using WDS data and information. Sectors agreed upon ranking disease control (76.5% of respondents) as the most beneficial outcome of WDS, while fostering new ideas through collaboration was valued by few participants (2.0%). Accessing data collected by ones own sector was identified as the most challenging (50%) yet least difficult to improve (88.3%). Having legal authority to conduct WDS was the second most frequently identified challenge. Interviewees explained that legal documentation required for crossinstitutional collaborations posed a barrier to efficient communication and use of human resources. Survey respondents identified allocation of human resources (75.5%), adequate budget (71.6%), and having a clear communication system between sectors (71.6%) as highest priority areas for improvement to WDS in Thailand. Authorization from administrative officials and support from local community members were identified as challenges during in-person interviews. Future outreach should be directed towards these groups. As 42.9% of marine health professionals had difficulty knowing whom to contact in other sectors and 28.4% of survey respondents indicated that communication with marine health professionals was not applicable to their work, connecting the marine sector with other sectors may be prioritized. This study identifies priorities for addressing current challenges in the establishment of a general WDS system and information management system in Thailand while presenting a model for such evaluation in other regions.

One Health Newsletter↗
USGS2003

Recombinant raccoon pox vaccine protects mice against lethal plague

Using a raccoon poxvirus (RCN) expression system, we have developed new recombinant vaccines that can protect mice against lethal plague infection. We tested the effects of a translation enhancer (EMCV-IRES) in combination with a secretory (tPA) signal or secretory (tPA) and membrane anchoring (CHV-gG) signals on in vitro antigen expression of F1 antigen in tissue culture and the induction of antibody responses and protection against Yersinia pestis challenge in mice. The RCN vector successfully expressed the F1 protein of Y. pestis in vitro. In addition, the level of expression was increased by the insertion of the EMCV-IRES and combinations of this and the secretory signal or secretory and anchoring signals. These recombinant viruses generated protective immune responses that resulted in survival of 80% of vaccinated mice upon challenge with Y. pestis . Of the RCN-based vaccines we tested, the RCN-IRES-tPA-YpF1 recombinant construct was the most efficacious. Mice vaccinated with this construct withstood challenge with as many as 1.5 million colony forming units of Y. pestis (7.7×10 4 LD 50 ). Interestingly, vaccination with F1 fused to the anchoring signal (RCN-IRES-tPA-YpF1-gG) elicited significant anti-F1 antibody titers, but failed to protect mice from plague challenge. Our studies demonstrate, in vitro and in vivo, the potential importance of the EMCV-IRES and secretory signals in vaccine design. These molecular tools provide a new approach for improving the efficacy of vaccines. In addition, these novel recombinant vaccines could have human, veterinary, and wildlife applications in the prevention of plague.

Vaccine↗