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At least 397 records · Page 22Linked to original sources

Bathymetric and Velocimetric Survey and Assessment of Habitat for Pallid Sturgeon on the Mississippi River in the Vicinity of the Proposed Interstate 70 Bridge at St. Louis, Missouri

A bathymetric and velocimetry survey was conducted on the Mississippi River in the vicinity of a proposed new bridge for Interstate 70 at St. Louis, Missouri. A multibeam echo sounder mapping system and an acoustic Doppler current profiler were used to obtain channel-bed elevations and vertically averaged and near-bed velocities for a 3,545-foot (1,080-meter) long reach of the Mississippi River approximately 1,935 feet (590 meters) wide from the Illinois to Missouri banks. Data from the 2009 survey were used to determine the conditions of the benthic habitat in the vicinity of the proposed Interstate 70 bridge. The channel-bed elevations ranged from approximately 346 feet (105.46 meters) to 370 feet (112.78 meters) above the North American Vertical Datum of 1988 in a majority of the channel except for the channel banks. Large dune features up to 12.5 feet (3.81 meters) high were present in the middle of the channel, and numerous smaller dunes and many ripples as smaller features were superimposed on the larger dunes. However, it is uncertain if the large dune features present in mid-channel are long-term features or an artifact of the seasonal flooding on the Mississippi River. A substantial scour depression was present on the right descending bank (Missouri side) near the downstream end of the study area, as well as other smaller scour holes near the instream barge mooring structures on the Missouri bank. The vertically averaged velocities acquired with the acoustic Doppler current profiler ranged from approximately 2 feet per second (0.61 meters per second) along the channel margins to approximately 7.0 feet per second (2.13 meters per second) in the main channel, with an average velocity of 5.5 feet per second (1.68 meters per second) in mid-channel. The orientation of the vertically averaged velocity vectors showed flow crossing from the Illinois bank to the Missouri bank from upstream to downstream in the study area, which was confirmed by the orientation of the large dune features in mid-channel and a shift in the channel thalweg from the Illinois bank to the Missouri bank. The near-bottom velocities acquired with the acoustic Doppler current profiler ranged from 0.3 to 7.0 feet per second (0.09 to 2.13 meters per second), and the effects of the large dune features were apparent in the more random scattering of the velocity vectors, the low velocities downstream from the dunes, and higher velocities near the crests of the dunes. Despite the considerable physical complexity of this site because of the arrangement of large sand dunes in the middle of the channel, existing studies do not document persistent use of these deep, fast, main-channel habitats by pallid sturgeon. Narrow channel-margin areas on both banks having relatively low velocity, high depth slope, and high velocity gradients are similar to adult migration habitats as documented on the Missouri River downstream from Kansas City, Missouri. Although the reach generally lacks features associated with sturgeon habitat selection on the Middle Mississippi River, the barge mooring areas on the right descending bank have topographic complexity and contain large woody debris and small patches of probable gravel-cobble substrate that may have positive habitat value for sturgeon or other species. Furthermore, telemetry studies have documented sturgeon migrating upstream and downstream through this reach as adults, and they probably drift downstream through this reach as free-embryo larvae. Successful upstream migration may depend on availability of areas with hydraulic complexity and relatively low velocities, as presently exist on the margins of the site. Additionally, complexity at the channel margin may provide areas where larvae settle out from drifting in the main current or may act to slow bulk drift rates. Construction of bridge piers close to the banks will likely alter hydraulics and sediment transport on the channel margins and may result in substanti

Scientific Investigations Report↗

Coastal circulation and sediment dynamics in Pelekane and Kawaihae Bays, Hawaii--measurements of waves, currents, temperature, salinity, turbidity, and geochronology: November 2010--March 2011

Coral reef communities on the Island of Hawaii have been heavily affected by the construction of Kawaihae Harbor in the 1950s and by subsequent changes in land use in the adjacent watershed. Sedimentation and other forms of land-based pollution have led to declines in water quality and coral reef health over the past two decades (Tissot, 1998). Erosion mitigation efforts are underway on land, and there is a need to evaluate the impact of these actions on the adjacent coastal ecosystem. The Kohala Center and Kohala Watershed Partnership was awarded $2.69 million from the National Oceanographic and Atmospheric Administration’s (NOAA) Restoration Center as part of the American Recovery and Reinvestment Act of 2009 to stabilize soil and improve land-use practices in the Pelekane Bay watershed. The grant allowed the Kohala Watershed Partnership to implement various upland watershed management activities to reduce land-based sources of pollution into Pelekane Bay. However, a number of questions must be answered in order to: (1) evaluate the effectiveness of the terrestrial watershed remediation efforts; (2) understand the potential of the local marine ecosystem to recover; and (3) understand the potential threat that existing mud deposits in the bay pose to adjacent, relatively pristine coral reef ecosystems. The goal of this experiment was to help address these questions and establish a framework to evaluate the success of the Kohala Watershed Partnership restoration efforts. This research program will also provide resource managers with information relevant to other watershed restoration efforts currently being planned in neighboring watersheds. This project involved an interdisciplinary team of coral reef biologists from the University of Hawaii Coral Reef Assessment and Monitoring Program, who focused on the impact of sedimentation on the biota of Pelekane Bay, and a team of geologists and oceanographers from the U.S. Geological Survey (USGS), who focused on the circulation and sediment dynamics in Pelekane and Kawaihae Bays. The initial findings from the USGS research program are described in this report. These measurements support the ongoing studies being conducted as part of the USGS Coastal and Marine Geology Program’s Pacific Coral Reef Project to better understand the effect of geologic and oceanographic processes on coral reef systems.

Hawai'i↗

Planetary dunes tell of otherworldly winds

Dune fields are common on beaches and in deserts—think of the imposing sand hills and sinuous ripples of the Sahara in Africa or the Karakum in Central Asia, for example—as well as underwater on the beds of rivers, lakes, and oceans. The varied shapes, sizes, and orientations of both modern dunes and those preserved in the geologic record tell of the conditions under which they formed, particularly the strengths and patterns of winds and ocean currents. This information offers us valuable windows into environments and climates at different places and at different times in Earth’s history.

Eos, American Geophysical Union↗

Biology, status, and management of the yellowstone cutthroat trout

Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri were historically distributed in the Yellowstone River drainage (Montana and Wyoming) and the Snake River drainage (Wyoming, Idaho, Utah, Nevada, and probably Washington). Individual populations evolved distinct life history characteristics in response to the diverse environments in which they were isolated after the last glaciation. Anthropogenic activities have resulted in a substantial decline (42% of the historical range is currently occupied; 28% is occupied by core [genetically unaltered] populations), but the number of extant populations, especially in headwater streams, has precluded listing of this taxon under the Endangered Species Act. Primary threats to persistence of Yellowstone cutthroat trout include (1) invasive species, resulting in hybridization, predation, disease, and interspecific competition; (2) habitat degradation from human activities such as agricultural practices, water diversions, grazing, dam construction, mineral extraction, grazing, timber harvest, and road construction; and (3) climate change, including an escalating risk of drought, wildfire, winter flooding, and rising temperatures. Extirpation of individual populations or assemblages has led to increasing isolation and fragmentation of remaining groups, which in turn raises susceptibility to the demographic influences of disturbance (both human and stochastic) and genetic factors. Primary conservation strategies include (1) preventing risks associated with invasive species by isolating populations of Yellowstone cutthroat trout and (2) connecting occupied habitats (where possible) to preserve metapopulation function and the expression of multiple life histories. Because persistence of isolated populations may be greater in the short term, current management is focused on isolating individual populations and restoring habitats; however, this approach implies that humans will act as dispersal agents if a population is extirpated because of stochastic events.

Idaho, Montana, Utah, Wyoming↗

Discharge and nutrient transport between lakes in a hydrologically complex area of Voyageurs National Park, Minnesota, 2010-2012

An acoustic Doppler velocity meter (ADVM) was deployed in the narrows between Namakan and Kabetogama Lakes in Voyageurs National Park, Minnesota, from November 3, 2010, through October 3, 2012. The ADVM can account for wind, seiche, and changing flow direction in hydrologically complex areas. The objectives were to (1) estimate discharge and document the direction of water flow, (2) assess whether specific conductance can be used to determine flow direction, and (3) document nutrient and chlorophyll a concentrations at the narrows. The discharge direction through the narrows was seasonal. Water generally flowed out of Kabetogama Lake and into Namakan Lake throughout the ice-covered season. During spring, water flow was generally from Namakan Lake to Kabetogama Lake. During the summer and fall, the water flowed in both directions, affected in part by wind. Water flowed into Namakan Lake 70% of water year 2011 and 56% of water year 2012. Nutrient and chlorophyll a concentrations were highest during the summer months when water-flow direction was unpredictable. The use of an ADVM was effective for assessing flow direction and provided flow direction under ice. The results indicated the eutrophic Kabetogama Lake may have a negative effect on the more pristine Namakan Lake. The results also provide data on the effects of the current water-level management plan and may help determine if adjustments are necessary to help protect the aquatic ecosystem of Voyageurs National Park.

Minnesota↗

Modeling the effects of tile drain placement on the hydrologic function of farmed prairie wetlands

The early 2000s saw large increases in agricultural tile drainage in the eastern Dakotas of North America. Agricultural practices that drain wetlands directly are sometimes limited by wetland protection programs. Little is known about the impacts of tile drainage beyond the delineated boundaries of wetlands in upland catchments that may be in agricultural production. A series of experiments were conducted using the well-published model WETLANDSCAPE that revealed the potential for wetlands to have significantly shortened surface water inundation periods and lower mean depths when tile is placed in certain locations beyond the wetland boundary. Under the soil conditions found in agricultural areas of South Dakota in North America, wetland hydroperiod was found to be more sensitive to the depth that drain tile is installed relative to the bottom of the wetland basin than to distance-based setbacks. Because tile drainage can change the hydrologic conditions of wetlands, even when deployed in upland catchments, tile drainage plans should be evaluated more closely for the potential impacts they might have on the ecological services that these wetlands currently provide. Future research should investigate further how drainage impacts are affected by climate variability and change.

Journal of the American Water Resources Associatio↗

Paleoproterozoic Mojave Province in northwestern Mexico? Isotopic and U-Pb zircon geochronologic studies of Precambrian and Cambrian crystalline and sedimentary rocks, Caborca, Sonora

Whole-rock Nd isotopic data and U-Pb zircon geochronology from Precambrian crystalline rocks in the Caborca area, northern Sonora, reveal that these rocks are most likely a segment of the Paleoproterozoic Mojave province. Supporting this conclusion are the observations that paragneiss from the > or =1.75 Ga Bamori Complex has a 2.4 Ga Nd model age and contains detrital zircons ranging in age from Paleoproterozoic (1.75 Ga) to Archean (3.2 Ga). Paragneisses with similar age and isotopic characteristics occur in the Mojave province in southern California. In addition, "A-type" granite exposed at the southern end of Cerro Rajon has ca 2.0 Ga Nd model age and a U-Pb zircon age of 1.71 Ga, which are similar to those of Paleoproterozoic granites in the Mojave province. Unlike the U.S. Mojave province, the Caborcan crust contains ca. 1.1 Ga granite (Aibo Granite), which our new Nd isotopic data suggest is largely the product of anatexis of the local Precambrian basement. Detrital zircons from Neoproterozoic to early Cambrian miogeoclinal arenites at Caborca show dominant populations ca. 1.7 Ga, ca. 1.4 Ga, and ca. 1.1 Ga, with subordinate Early Cambrian and Archean zircons. These zircons were likely derived predominately from North American crust to the east and northeast, and not from the underlying Caborcan basement. The general age and isotopic similarities between Mojave province basement and overlying miogeoclinal sedimentary rocks in Sonora and southern California is necessary, but not sufficient, proof of the hypothesis that Sonoran crust is allochthonous and was transported to its current position during the Mesozoic along the proposed Mojave-Sonora megashear. One viable alternative model is that the Caborcan Precambrian crust is an isolated, autochthonous segment of Mojave province crust that shares a similar, but not identical, Proterozoic geological history with Mojave province crust found in the southwest United States.

Sonora↗

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report↗

Observations of Interspecific amplexus between western North American ranid frogs and the introduced American bullfrog (Rana catesbeiana) and an hypothesis concerning breeding interference

Introduced American bullfrogs ( Rana catesbeiana ) come in contact with native amphibians on four continents and are well established in lowlands of western North America. To date, research on the effects of introduced bullfrogs on native frogs has focused on competition and predation, and is based largely on larval interactions. We present observations of interspecific amplexus between bullfrogs and two native ranid frogs ( R. aurora and R. pretiosa ) from six sites across the Pacific Northwest that imply that this interaction is more widespread than currently recognized. Our observations indicate that R. catesbeiana juveniles and subadults in this region are of appropriate size to elicit marked amplectic responses from males of both native species. Our literature review suggests that greater opportunity may exist for pairings between R. catesbeiana and native R. aurora or R. pretiosa than among syntopic native ranids in western North America. We hypothesize that interspecific amplexus with introduced R. catesbeiana could result in reproductive interference with negative demographic consequences in native ranid populations that have been reduced or altered by other stressors.

American Midland Naturalist↗

Demographic population model for American shad: will access to additional habitat upstream of dams increase population sizes?

American shad Alosa sapidissima are in decline in their native range, and modeling possible management scenarios could help guide their restoration. We developed a density-dependent, deterministic, stage-based matrix model to predict the population-level results of transporting American shad to suitable spawning habitat upstream of dams on the Roanoke River, North Carolina and Virginia. We used data on sonic-tagged adult American shad and oxytetracycline-marked American shad fry both above and below dams on the Roanoke River with information from other systems to estimate a starting population size and vital rates. We modeled the adult female population over 30 years under plausible scenarios of adult transport, effective fecundity (egg production), and survival of adults (i.e., to return to spawn the next year) and juveniles (from spawned egg to age 1). We also evaluated the potential effects of increased survival for adults and juveniles. The adult female population size in the Roanoke River was estimated to be 5,224. With no transport, the model predicted a slow population increase over the next 30 years. Predicted population increases were highest when survival was improved during the first year of life. Transport was predicted to benefit the population only if high rates of effective fecundity and juvenile survival could be achieved. Currently, transported adults and young are less likely to successfully out-migrate than individuals below the dams, and the estimated adult population size is much smaller than either of two assumed values of carrying capacity for the lower river; therefore, transport is not predicted to help restore the stock under present conditions. Research on survival rates, density-dependent processes, and the impacts of structures to increase out-migration success would improve evaluation of the potential benefits of access to additional spawning habitat for American shad.

North Carolina, Virginia↗

Conservation status of freshwater gastropods of Canada and the United States

This is the first American Fisheries Society conservation assessment of freshwater gastropods (snails) from Canada and the United States by the Gastropod Subcommittee (Endangered Species Committee). This review covers 703 species representing 16 families and 93 genera, of which 67 species are considered extinct, or possibly extinct, 278 are endangered, 102 are threatened, 73 are vulnerable, 157 are currently stable, and 26 species have uncertain taxonomic status. Of the entire fauna, 74% of gastropods are imperiled (vulnerable, threatened, endangered) or extinct, which exceeds imperilment levels in fishes (39%) and crayfishes (48%) but is similar to that of mussels (72%). Comparison of modern to background extinction rates reveals that gastropods have the highest modern extinction rate yet observed, 9,539 times greater than background rates. Gastropods are highly susceptible to habitat loss and degradation, particularly narrow endemics restricted to a single spring or short stream reaches. Compilation of this review was hampered by a paucity of current distributional information and taxonomic uncertainties. Although research on several fronts including basic biology, physiology, conservation strategies, life history, and ecology are needed, systematics and curation of museum collections and databases coupled with comprehensive status surveys (geographic limits, threat identification) are priorities.

Fisheries↗

Estimating indices of range shifts in birds using dynamic models when detection is imperfect

There is intense interest in basic and applied ecology about the effect of global change on current and future species distributions. Projections based on widely used static modeling methods implicitly assume that species are in equilibrium with the environment and that detection during surveys is perfect. We used multiseason correlated detection occupancy models, which avoid these assumptions, to relate climate data to distributional shifts of Louisiana Waterthrush in the North American Breeding Bird Survey (BBS) data. We summarized these shifts with indices of range size and position and compared them to the same indices obtained using more basic modeling approaches. Detection rates during point counts in BBS surveys were low, and models that ignored imperfect detection severely underestimated the proportion of area occupied and slightly overestimated mean latitude. Static models indicated Louisiana Waterthrush distribution was most closely associated with moderate temperatures, while dynamic occupancy models indicated that initial occupancy was associated with diurnal temperature ranges and colonization of sites was associated with moderate precipitation. Overall, the proportion of area occupied and mean latitude changed little during the 1997–2013 study period. Near-term forecasts of species distribution generated by dynamic models were more similar to subsequently observed distributions than forecasts from static models. Occupancy models incorporating a finite mixture model on detection – a new extension to correlated detection occupancy models – were better supported and may reduce bias associated with detection heterogeneity. We argue that replacing phenomenological static models with more mechanistic dynamic models can improve projections of future species distributions. In turn, better projections can improve biodiversity forecasts, management decisions, and understanding of global change biology.

Global Change Biology↗

Changes in driftwood delivery to the Canadian Arctic Archipelago: The hypothesis of postglacial oscillations of the transpolar drift

Driftwood appears to be absent in the Beaufort Gyre but abundant in parts of the Transpolar Drift (TPD), which crosses the Arctic Ocean from the Chukchi Sea to the vicinity of northeastern Greenland. Nearly 300 radiocarbon dates on Holocene driftwood from the Canadian Arctic Archipelago reveal two regions with contrasting histories of driftwood incursion: the region accessible to wood brought into Baffin Bay by the West Greenland Current and the rest of the archipelago, which receives wood from the Arctic Ocean. We hypothesize that when the TPD was deflected westward along northern Greenland, wood was delivered widely to the Canadian Arctic Archipelago; when the TPD exited entirely through Fram Strait via the East Greenland Current, little or no wood was delivered to most of the archipelago, but some continued into Baffin Bay via the West Greenland Current. A split TPD delivered wood to both regions. The regional driftwood incursion histories exhibit multiple maxima and minima that can be explained through this hypothesis. The Larix t o Picea ratio of wood arriving in the Canadian Arctic Archipelago has also changed through time. This may indicate varying contributions from Russian versus North American sources, which in turn may indicate variable mixing of wood en route. The inferred discharge paths of the TPD were apparently stable for intervals ranging from several millennia to centuries or perhaps only decades. The last major switch broadly correlates with the onset of Neoglaciation. Variations in the path and strength of the TPD may have important oceanographic and climatic consequences downstream in the North Atlantic Ocean.

Arctic↗

Estimation of potential maximum biomass of trout in Wyoming streams to assist management decisions

Fishery managers can benefit from knowledge of the potential maximum biomass (PMB) of trout in streams when making decisions on the allocation of resources to improve fisheries. Resources are most likely to be expended on streams with high PMB and with large differences between PMB and currently measured biomass. We developed and tested a model that uses four easily measured habitat variables to estimate PMB (upper 90th percentile of predicted mean biomass) of trout ( Oncorhynchus spp., Salmo trutta , and Salvelinus fontinalis ) in Wyoming streams. The habitat variables were proportion of cover, elevation, wetted width, and channel gradient. The PMB model was constructed from data on 166 stream reaches throughout Wyoming and validated on an independent data set of 50 stream reaches. Prediction of PMB in combination with estimation of current biomass and information on habitat quality can provide managers with insight into the extent to which management actions may enhance trout biomass.

Wyoming↗

Flow characteristics at U.S. Geological Survey streamgages in the conterminous United States

This dataset represents point locations and flow characteristics for current (as of November 20, 2001) and historical U.S. Geological Survey (USGS) streamgages in the conterminous United States. The flow characteristics were computed from the daily streamflow data recorded at each streamgage for the period of record. The attributes associated with each streamgage include: Station number Station name Station latitude (decimal degrees in North American Datum of 1983, NAD 83) Station longitude (decimal degrees in NAD 83) First date (year, month, day) of streamflow data Last date (year, month, day) of streamflow data Number of days of streamflow data Minimum and maximum daily flow for the period of record (cubic feet per second) Percentiles (1, 5, 10, 20, 25, 50, 75, 80, 90, 95, 99) of daily flow for the period of record (cubic feet per second) Average and standard deviation of daily flow for the period of record (cubic feet per second) Mean annual base-flow index (BFI: see supplemental information) computed for the period of record (fraction, ranging from 0 to 1) Year-to-year standard deviation of the annual base-flow index computed for the period of record (fraction) Number of years of data used to compute the base-flow index (years) Reported drainage area (square miles) Reported contributing drainage area (square miles) National Water Information System (NWIS)-Web page URL for streamgage Hydrologic Unit Code (HUC, 8 digit) Hydrologic landscape region (HLR) River Reach File 1 (RF1) segment identification number (E2RF1##) Station numbers, names, locations, and drainage areas were acquired through the National Water Information System (NWIS)-Web (http://water.usgs.gov/nwis) on November 20, 2001. The streamflow data used to compute flow characteristics were copied from the Water server (water.usgs.gov:/www/htdocs/nwisweb/data1/discharge/) on November 2, 2001. The missing value indicator for all attributes is -99. Some streamflow characteristics are missing for: (1) streamgages measuring flow subject to tidal effects, which cause flow to reverse directions, (2) streamgages with site information but no streamflow data at the time the data were retrieved, and (3) streamgages with record length too short to compute the base-flow index.

Open-File Report↗

Population trends from the North American Breeding Bird Survey

INTRODUCTION: Most Neotropical migrant birds are difficult to count accurately and are moderately common over large breeding distributions. Consequently, little historical information exists on their large-scale population changes, and most of this information is anecdotal. Surveys begun in this century such as Breeding Bird Censuses and Christmas Bird Counts have the potential to provide this information, but only the North American Breeding Bird Survey (BBS) achieves the extensive continental coverage necessary to document population changes for most Neotropical migrant birds. Conservationists and ecologists have begun to use BBS data to estimate population trends, but there is still widespread confusion over exactly what these data show regarding population changes. In this chapter, we review the current state of knowledge regarding population changes in Neotropical migrant birds and the methods used to analyze these changes. The primary emphasis is on the BBS (Robbins et al. 1986) because this survey provides the best available data for estimating trends of Neotropical migrants on a continental scale. To address questions about methods of analyzing survey data, we review and compare some alternative methods of analyzing BBS data. We also discuss the effectiveness of the BBS in sampling Neotropical migrant species, and review possibilities for use of alternative data sets to verify trends from the BBS.

Book chapter↗

Introduction: Paleozoic applications of sequence stratigraphy

Despite conceptual origins from studies of the Paleozoic strata of cratonic basins, sequence stratigraphy has largely been developed and applied to post-Paleozoic successions in extracratonic settings. The application of continental-margin sequence stratigraphic concepts to cratonic basinal successions is fraught with problems owing to slower rates of sediment accumulation, and consequently, a more coarsely defined temporal resolution. In addition, some important sequence stratigraphic components are rare or completely missing from cratonic areas. Common usage of genetic sequence stratigraphic terminology can coopt critical evaluation of depositional characters, and must be practiced with extreme caution in order to avoid 'model-driven' approaches to stratigraphic synthesis. The best available tests for evaluating current questions regarding the central role of eustasy in sequence stratigraphy may be through interregional and intercontinental comparisons of cratonic stratigraphic sequences.

Paleozoic sequence stratigraphy: views from the No↗

Site occupancy of focal shorebird species at Whiskey Island and Caminada Headland, Louisiana 2012–2020

Coastal restoration through island construction and augmentation is an increasingly common management method in the northern Gulf of Mexico, but evaluating the impacts to shorebird species is difficult. Shorebirds are mostly migratory and many aspects of their life history, including reproduction in some species, occur in other places. In addition, counts or observations of shorebirds made at any given time represent only a portion of the population and that proportion may change with site conditions such as time of day and weather. Dynamic occupancy models can account for imperfect detection and produce estimates of the proportion of area occupied over time as a way to track trends in bird utilization over time. In this chapter we report on occupancy trends for five focal shorebird species from Caminada Headland and Whiskey Island: American Oystercatcher ( Haematopus palliatus ), Piping Plover ( Charadrius melodus ), Red Knot ( Calidris canutus ), Snowy Plover ( Charadrius nivosus ), and Wilson’s Plover ( Charadrius wilsonia ). We examined up to nine years of surveys at the two sites to model long-term trends in occupancy rates from a period spanning before, during, and after restoration. Our objective was to determine if there was change in occupancy over time (trend) during the restoration period. Field sampling was conducted as described in Chapter 1 for the five focal species in this chapter. To create spatial units for occupancy analysis we used a grid of 53 unique cells at Caminada Headland and 26 unique cells at Whiskey Island. All observations of the species were located into spatial units using GIS and presence of each species in each cell was determined for each visit within a sampling season. Sampling seasons were defined for species as the period of time where they were most likely to be using the study area, and corresponded with wintering (August–May), breeding (April–August), or staging (March–October). We did not include covariates for initial occupancy or colonization and site survival because these were small sites with homogenous habitat. We did account for time of year within a season by treating survey date as a covariate of detection probability and allowed it to vary throughout the season. We tested for a trend in occupancy over time by determining if the estimated slope through the series of annual occupancy estimates was significantly different from 0. We conducted 153 total surveys at Caminada Headland from 11 January 2013 to 5 June 2019, and 213 total surveys at Whiskey Island from 7 August 2012 to 19 August 2020. The number of surveys per year varied by species and site and range from 6–23 per species annually at Caminada Headland and 11–28 per species annually at Whiskey Island. Occupancy trends were able to be assessed for all species at both sites, with the exception of the American Oystercatcher, which were only observed in sufficient numbers to estimate occupancy at Whiskey Island. We found a significant positive trend in occupancy from 0.325 to 0.741 for American Oystercatcher at Whiskey Island. There was no significant trend in Piping Plover occupancy at Caminada Headland where occupancy was consistently high (0.910 to 0.947). At Whiskey Island, Piping Plover occupancy estimates increased from 0.574 to 0.908 during the study period which was a significant increase. At Caminada Headland and Whiskey Island Red Knot occupancy varied from 0.482 to 0.891 and 0.350 to 0.742, respectively, but showed no significant trend over the study period. Snowy Plover occupancy at Caminada Headland increased significantly from 0.295 to 0.785 over the study period. Snowy Plover occupancy also increased significantly at Whiskey Island from 0.442 to 0.906. Wilson’s Plover occupancy declined slightly during the study period from 0.946 to 0.935 at Caminada Headland, and from 0.858 to 0.736 at Whiskey Island, but the decline was not significant at either site. We found no evidence that occupancy declined significantly for any of the species during the period prior to, during, and after restoration. We did find a significant increasing trend in occupancy for Snowy Plover at Caminada Headland and a significant increasing trend for American Oystercatcher, Piping Plover, and Snowy Plover at Whiskey Island. Our modeling results indicate that sampling such as this is sufficient for occupancy modeling and can provide a robust metric for comparison over time or among sites. In future research we plan to investigate the sample size needed to detect a trend. We are currently conducting a power analysis to determine the minimum amount of sampling necessary to have power to detect a trend based on the detection probabilities from this study.

Report↗