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USGS2026

High and dry: The persistence of diverse coastal marsh communities depends on available upland area and connection to surrounding waters

Sea-level-rise and alterations to natural hydrology have contributed to coastal land loss. To combat coastal land loss and maintain the ecosystem services provided by marshes, marsh creation has been broadly implemented. Marsh creation projects can be performed in conjunction with the construction of elevated terrestrial ridges that seek to mimic historic delta-formed distributary ridges. Ridges and similar elevated structures, such as those surrounding created marshes, offer the opportunity to sample the ecotones between low marsh and upland areas within a small area. We sampled marsh assemblages on elevation gradients at eight sites in the Louisiana coastal zone. We identified nine marsh communities based on co-occurrence of taxa and abiotic conditions (soil salinity, percent time inundated, soil percent moisture, soil bulk density, and soil pH) with a two-step process of hierarchical clustering and random forest classification. Inundation time and salinity were identified as the most important conditions related to community composition. We used future estimates of coastal elevations based on local relative sea-level-rise estimates to make predictions of community change up to 50 years into the future. Our predictions, meant to serve as generalizations for the coastal region, indicate a near total loss of high-elevation salt marsh communities at the sites sampled. Elevation variation supports diverse marsh communities when water is allowed to flow as in a natural marsh. Hydrology regulates inundation, and by extension, salinity. Evaluating hydrologic exchange can be incorporated into decisions regarding future marsh creation to support marsh health and persistence.

Louisiana↗
USGS2026

Assessing working lands as habitat for disturbance-dependent birds using autonomous recording units

Introduction Working lands can provide habitat for declining disturbance-dependent birds, such as Bachman's Sparrow ( Peucaea aestivalis ) and Northern Bobwhite ( Colinus virginianus ), but it remains unclear whether restoration following intensive land use (e.g. surface mining) yields habitat comparable to less intensive land uses (e.g. timber production). Objectives We evaluated effects of land use both in working lands (recently replanted surface mine reclamation site and recently replanted timber production site) and reference sites explicitly managed for wildlife (recently restored young pine savanna and mature pine savanna) and understory vegetation characteristics on relative abundance of disturbance-dependent birds within upland pine ( Pinus spp.) communities in southeastern Georgia, United States. We hypothesized that the mine reclamation site would support similar bird species but in lower relative abundances than other land uses. Methods We conducted daily acoustic surveys using autonomous recording units (ARUs) and measured vegetation surveys once per point from May to June 2024. We used Royle-Nichols models, an adapted occupancy model, to estimate relative abundance for eight bird species. Results Land use influenced relative abundance for all species and explained more variation in relative abundance than measured understory vegetation characteristics. The mining reclamation site supported most disturbance-dependent species and, in some cases, equal or higher relative abundances, particularly for Northern Bobwhite and Common Nighthawk ( Chordeiles minor ). Responses across timber production and savanna sites varied by species. Vegetation effects were generally weaker and species-specific, suggesting that land use history and associated habitat legacies play an important role in structuring these bird communities. Conclusion Working lands, including reclaimed mines, can provide habitat for disturbance-dependent birds, and ARUs are effective for evaluating these patterns across land uses.

Restoration Ecology↗
USGS2011

Integrating science and resource management in Tampa Bay, Florida

Tampa Bay is recognized internationally for its remarkable progress towards recovery since it was pronounced "dead" in the late 1970s. Due to significant efforts by local governments, industries and private citizens throughout the watershed, water clarity in Tampa Bay is now equal to what it was in 1950, when population in the watershed was less than one-quarter of what it is today. Seagrass extent has increased by more than 8,000 acres since the mid-1980s, and fish and wildlife populations are increasing. Central to this successful turn-around has been the Tampa Bay resource management community's long-term commitment to development and implementation of strong science-based management strategies. Research institutions and agencies, including Eckerd College, the Florida Wildlife Commission Fish and Wildlife Research Institute, Mote Marine Laboratory, National Oceanic and Atmospheric Administration, the Southwest Florida Water Management District, University of South Florida, U.S. Environmental Protection Agency, U.S. Geological Survey, local and State governments, and private companies contribute significantly to the scientific basis of our understanding of Tampa Bay's structure and ecological function. Resource management agencies, including the Tampa Bay Regional Planning Council's Agency on Bay Management, the Southwest Florida Water Management District's Surface Water Improvement and Management Program, and the Tampa Bay Estuary Program, depend upon this scientific basis to develop and implement regional adaptive management programs. The importance of integrating science with management has become fully recognized by scientists and managers throughout the region, State and Nation. Scientific studies conducted in Tampa Bay over the past 10–15 years are increasingly diverse and complex, and resource management programs reflect our increased knowledge of geology, hydrology and hydrodynamics, ecology and restoration techniques. However, a synthesis of this research and its integration into resource management has not been prepared for Tampa Bay since the mid-1980s. The need for an up-to-date synthesis of Tampa Bay science and management has resulted in the production of this document. The U.S. Geological Survey recently completed a 5-year Tampa Bay Integrated Science Study, and the Tampa Bay Estuary Program updated the Comprehensive Conservation and Management Plan for Tampa Bay in 2006. These efforts build upon results of the many research and management studies and programs summarized here.

Florida↗
USGS2002

Modeling Fish Population and Biomass on the Everglades Landscape (ALFISH)

ALFISH is a model created under the Across Trophic Level System Simulation (ATLSS) Program of the U.S. Geological Survey (USGS). Its purpose is to describe fish functional groups in freshwater marshes of the greater Everglades area of southern Florida. In particular, it is intended to assess the spatial pattern of fish densities through time across freshwater marshes. This model has the capability of providing a dynamic measure of the spatially explicit food resources available to wading birds. ALFISH simulates two functional groups - large and small fish - where the larger fish can prey on the smaller fish. Both functional groups are size-structured. The marsh landscape is modeled as 500-m x 500-m spatial cells on a grid across southern Florida. The ATLSS High Resolution Hydrology model is used to provide water levels in the spatial cells on 5-day intervals. Fish populations spread across the marsh during flooded conditions and either retreat into refugia (alligator ponds), move to other spatial cells, or die if their cell dries out. ALFISH has been applied to the evaluation of alternative water regulation scenarios under the Central and South Florida Comprehensive Project Review Study. The objective of this Review Study has been to compare alternative methods for restoring historical ecological conditions in southern Florida. ALFISH has provided information on which hydrological scenarios are most likely to increase fish biomass and its availability to wading bird populations. The model also provides the opportunity for stakeholders with interests in particular subregions of the landscape to contrast the effects of alternative hydrologic plans on the availability of fish biomass in these subregions. As a demographic model, ALFISH also keeps track of the history of the effects of dry, normal, and wet hydrologic conditions on fish population size structure.

Florida↗
USGS2006

Sedimentation and Occurrence and Trends of Selected Chemical Constituents in Bottom Sediment, Empire Lake, Cherokee County, Kansas, 1905-2005

For about 100 years (1850-1950), the Tri-State Mining District in parts of southeast Kansas, southwest Missouri, and northeast Oklahoma was one of the primary sources of lead and zinc ore in the world. The mining activity in the Tri-State District has resulted in substantial historical and ongoing input of cadmium, lead, and zinc to the environment including Empire Lake in Cherokee County, southeast Kansas. The environmental contamination caused by the decades of mining activity resulted in southeast Cherokee County being listed on the U.S. Environmental Protection Agency's National Priority List as a superfund hazardous waste site in 1983. To provide some of the information needed to support efforts to restore the ecological health of Empire Lake, a 2-year study was begun by the U.S. Geological Survey in cooperation with the U.S. Fish and Wildlife Service and the Kansas Department of Health and Environment. A combination of sediment-thickness mapping and bottom-sediment coring was used to investigate sediment deposition and the occurrence of cadmium, lead, zinc, and other selected constituents in the bottom sediment of Empire Lake. The total estimated volume and mass of bottom sediment in Empire Lake were 44 million cubic feet and 2,400 million pounds, respectively. Most of the bottom sediment was located in the main body and the Shoal Creek arm of the reservoir. Minimal sedimentation was evident in the Spring River arm of the reservoir. The total mass of cadmium, lead, and zinc in the bottom sediment of Empire Lake was estimated to be 78,000 pounds, 650,000 pounds, and 12 million pounds, respectively. In the bottom sediment of Empire Lake, cadmium concentrations ranged from 7.3 to 76 mg/kg (milligrams per kilogram) with an overall median concentration of 29 mg/kg. Compared to an estimated background concentration of 0.4 mg/kg, the historical mining activity increased the median cadmium concentration by about 7,200 percent. Lead concentrations ranged from 100 to 950 mg/kg with an overall median concentration of 270 mg/kg. Compared to an estimated background concentration of 33 mg/kg, the median lead concentration was increased by about 720 percent as a result of mining activities. The range in zinc concentrations was 1,300 to 13,000 mg/kg with an overall median concentration of 4,900 mg/kg. Compared to an estimated background concentration of 92 mg/kg, the median zinc concentration was increased by about 5,200 percent. Within Empire Lake, the largest sediment concentrations of cadmium, lead, and zinc were measured in the main body of the reservoir. Within the Spring River arm of the reservoir, increased concentrations in the downstream direction likely were the result of tributary inflow from Short Creek, which drains an area that has been substantially affected by historical lead and zinc mining. Compared to nonenforceable sediment-quality guidelines, all Empire Lake sediment samples (representing 21 coring sites) had cadmium concentrations that exceeded the probable-effects guideline (4.98 mg/kg), which represents the concentration above which toxic biological effects usually or frequently occur. With one exception, cadmium concentrations exceeded the probable-effects guideline by about 180 to about 1,400 percent. With one exception, all sediment samples had lead concentrations that exceeded the probable-effects guideline (128 mg/kg) by about 10 to about 640 percent. All sediment samples had zinc concentrations that exceeded the probable-effects guideline (459 mg/kg) by about 180 to about 2,700 percent. Overall, cadmium, lead, and zinc concentrations in the bottom sediment of Empire Lake have decreased over time following the end of lead and zinc mining in the area. However, the concentrations in the most recently deposited bottom sediment (determined for 4 of 21 coring sites) still exceeded the probable-effects guideline by about 440 to 640 percent for cadmium, about 40 to 80 percent for lead, and about 580

Scientific Investigations Report↗
USGS2018

Developing a framework for evaluating tallgrass prairie reconstruction methods and management

The thousands of hectares of prairie reconstructed each year in the tallgrass prairie biome can provide a valuable resource for evaluation of seed mixes, planting methods, and post-planting management if methods used and resulting characteristics of the prairies are recorded and compiled in a publicly accessible database. The objective of this study was to evaluate the use of such data to understand the outcomes of reconstructions over a 10-year period at two U.S. Fish and Wildlife Service refuges. Variables included number of species planted, seed source (combine-harvest or combine-harvest plus hand-collected), fire history, and planting method and season. In 2015 we surveyed vegetation on 81 reconstructions and calculated proportion of planted species observed; introduced species richness; native species richness, evenness and diversity; and mean coefficient of conservatism. We conducted exploratory analyses to learn how implied communities based on seed mix compared with observed vegetation; which seeding or management variables were influential in the outcome of the reconstructions; and consistency of responses between the two refuges. Insights from this analysis include: 1) proportion of planted species observed in 2015 declined as planted richness increased, but lack of data on seeding rate per species limited conclusions about value of added species; 2) differing responses to seeding and management between the two refuges suggest the importance of geographic variability that could be addressed using a public database; and 3) variables such as fire history are difficult to quantify consistently and should be carefully evaluated in the context of a public data repository.

Ecological Restoration↗
USGS2018

Prairie reconstruction unpredictability and complexity: What is the rate of reconstruction failures?

The outcomes of prairie reconstructions are subject to both unpredictability and complexity. Prairie, tallgrass, and mixed grass reconstruction is defined as the planting of a native herbaceous seed mixture composed of multiple prairie species (10 or more) in an area where the land has been heavily cultivated or anthropogenically disturbed. Because of the unpredictability and complexity inherent in reconstructions, some outcomes end up being failures dominated by exotic species. We propose that these failures follow a fat-tailed distribution as found in other complex systems. Fat-tailed distributions follow the Pareto principle, where 80% of the time reconstructions work as expected but 20% of the time they are surprising and far from the typical response. Therefore, we suggest managers be informed that reconstruction failures follow fat-tailed distributions as opposed to assuming reconstructions are simple and predictable with few failures. Once managers realize failures are inherent in reconstructions, resources can be allocated to more effective methods of dealing with failures rather than working to perfect the predictability of reconstructions. We suggest implementing adaptive management, especially where unpredictability is high, as a way to learn from failures. Combining learning from adaptive management with a reconstruction design process, in which goals and constraints are iteratively adjusted, can be a way to deal with failures and develop better outcomes.

Ecological Restoration↗
USGS2024

Effect of invasive plant removal on the density of Peromyscus sonoriensis (western deer mice) in Point Reyes National Seashore, California, USA.

Non-native plants can affect communities through direct competition, and by providing refuge to seed predators, creating apparent competition with native plants. Ammophila arenaria (European beachgrass) has been introduced to coastal dune habitats throughout the western United States where it forms dense monocultures, stabilizes dunes, and alters abiotic and biotic conditions. The dominance of European beachgrass has been linked to declines of Lupinus tidestromii (Tidestrom’s lupine), an herb endemic to coastal dune communities in central and northern California. Peromyscus sonoriensis (western deer mice), a native seed predator, use beachgrass as refuge from predators. Tidestrom’s lupine plants near European beachgrass stands experience greater predation pressure from deer mice. At Point Reyes National Seashore, California, USA (PRNS), mechanical removal, manual pulling, and herbicide treatment have been used to reduce the density of European beachgrass near Tidestrom’s lupine populations. We trapped deer mice at five sites in PRNS that experienced different management regimes and used spatially-explicit capture-recapture models to estimate deer mouse density as a function of site and habitat treatment. We found that deer mouse density was lowest in areas where European beachgrass was mechanically removed and in herbicide-treated foredunes, and highest in areas highly invaded by European beachgrass and Carpobrotus spp. (iceplant). The density of deer mice increased from 2021 to 2022 at every site except one that underwent extensive mechanical removal of European beachgrass from 2010-2011. This study shows enduring effects of European beachgrass removal on the density of a native seed predator and highlights the importance of habitat management for conservation of Tidestrom’s lupine.

California↗
USGS2006

Small clusters of fast-growing trees enhance forest structure on restored bottomland sites

Despite the diversity of trees in bottomland forests, restoration on bottomland sites is often initiated by planting only a few species of slow-growing, hard mast?producing trees. Although successful at establishing trees, these young forests are slow to develop vertical structure, which is a key predictor of forest bird colonization. Furthermore, when natural seed sources are few, restored sites may be depauperate in woody species. To increase richness of woody species, maximum tree height, and total stem density, I supplemented traditional plantings on each of 40 bottomland restoration sites by planting 96 Eastern cottonwood (Populus deltoides) and American sycamore (Platanus occidentalis) in eight clusters of 12 trees. First year survival of cottonwood stem cuttings (25%) and sycamore seedlings (47%) was poor, but survival increased when afforded protection from competition with weeds. After five growing seasons, 165 of these 320 supplemental tree clusters had at least one surviving tree. Vegetation surrounding surviving clusters of supplemental trees harbored a greater number of woody species, increased stem density, and greater maximum tree height than was found on paired restoration sites without supplemental trees. These increases were primarily accounted for by the supplemental trees.

Restoration Ecology↗