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Fulfilling a paradoxical mandate: can the Environmental Water Account ensure the reliability of freshwater exports from the Sacramento-San Joaquin Delta and simultaneously protect delta smelt (Hypomesus transpacificus) from excessive entrainment?

The San Francisco Estuary (SFE) is often defined by its extremes. It is considered one of the most urbanized estuaries in the world (Conomos 1979, Nichols et al. 1986), and one of the most invaded estuaries in the United States, with hundreds of aquatic nonindigenous species established throughout the system (Cohen and Carlton 1995, Dill and Cordone 1997, Kimmerer and Orsi 1996). It is also one of the most managed estuaries, particularly in relation to freshwater inflow, water circulation, and water quality (Jassby and Powell 1994, CSWRCB 1995, Arthur et al. 1996, Kimmerer 2002). Despite this high level of disturbance, the SFE is one of the most valuable natural resources in the western United States (CALFED 2000). The SFE provides important habitat for numerous native plant and animal species, many of special concern, as well as several species with sport and commercial value (CALFED 2000). Conserving and restoring estuarine habitat and natural resources is a pressing and complex challenge for the responsible government agencies because human water needs continue to increase in concert with continuing urbanization of the watershed.

Interagency Ecological Program Newsletter

Natural resource condition assessment: Channel Islands National Park

The Natural Resource Condition Assessment (NRCA) Program aims to provide documentation about the current conditions of important Park natural resources through a spatially explicit, multidisciplinary synthesis of existing scientific data and knowledge. Findings from the NRCA will help Channel Islands National Park (CINP) managers to develop near-term management priorities. The central objectives of this assessment were to evaluate the current conditions and trends of key Park resources, identify important knowledge gaps, and determine key stressors and threats. Because a recent report provided an assessment of marine resources (Engle 2006), which constitute 50% of the park, this NRCA focused on terrestrial resources. For this NRCA, CINP resource managers identified that the greatest Park need was to know whether or not vegetation (primarily woody vegetation) is recovering on the Channel Islands and how this may be influencing recovery of the native terrestrial vertebrates. To address this, the CINP NRCA team evaluated the condition of island vegetation and vertebrate communities using both: 1) already available, summarized information from reports, theses, and journal articles and 2) new analyses of recently available, existing data collected on the islands. Descriptions of specific methods used to analyze available data by the NRCA team are provided within the assessment sections in Chapter 4 of this report. The Team used the Vital Signs indicators as identified by Fancy et al. (2009) for monitoring the condition of Natural Resources in U.S. National Parks. Using this framework, the focal study resource components were the five CINP islands, because these are the bio-geophysical resources of greatest interest to the CINP. Each of the islands has its own unique history of human impacts, ecological conditions, restoration efforts, and natural resource monitoring. The Team evaluated island scrub recovery by assessing changes over time in two metrics: 1) vegetation community structure (species composition, cover, and spatial extent), and 2) vertebrate abundance, relative to the reference condition of each island. The reference conditions for this NRCA were the particular island’s ecological state prior to European settlement or ranching, which represent the ecological state to which the NPS desires the park return. For each metric, the Team determined the Reference Conditions/Values, Current Condition, Trend, and Recovery Potential (based on a review of the literature and from the NRCA team’s analysis of newly available data), Threats and Stressors, Data Gaps, Overall Condition. A qualitative statement of overall current condition was created for each metric, after all data and literature relevant to the measures (i.e., vegetation and vertebrates) of each resource component (i.e., island) were reviewed and evaluated. All information gathered for this NRCA is available and managed by CINP, so that the compilation of resources would be available not only for the assessment team, but will be provided for future Park reference. Chapter 1 of this NRCA provides a descriptive background of NRCAs. Chapter 2 provides Park-wide natural resource background information, while Chapter 3 describes the overall methodological approach used in this assessment. Chapter 4 provides a detailed assessment of each island’s condition, which is then summarized Park-wide and for each island in Chapter 5. Based on both vegetation recovery and vertebrate population abundances, our assessment found Santa Cruz Island (SCI), Santa Rosa Island (SRI), San Miguel Island (SMI), and Anacapa Island (AI) to be, overall, in moderate condition and slowly recovering following the removal of non-native herbivores. The condition of Santa Barbara Island (SBI) is poor and remains in a state that is not likely to improve without assisted recovery by the Park. All islands have exhibited some level of native vegetation recovery, with most of the observed natural recovery occurring on SCI, SRI, SMI, and AI; very little recovery has occurred at present on SBI. Vegetation recovery is uneven across each island and largely limited to mesic areas, such as north-facing slopes. Areas that will likely require some assisted recovery efforts are those that are: at risk of erosion, isolated, lacking native seed banks, and plagued with high competition of non-native grasses and other invasives. Some plant communities, such as exposed upland vegetation on SRI, also have lower natural recovery potential and will likely require assisted recovery. The overall condition of the Park’s terrestrial island vertebrate species generally appears to be good and improving, with high potential for further recovery to reach pre-ranching era reference conditions. This is particularly true for vertebrates on SCI, SRI, and SMI. Although there are limited data for AI, the data that are available suggest that vertebrates on that island are in good condition and improving as well. However, the condition of SBI vertebrates is only moderate, with natural recovery potential being low, with many landbird species’ populations currently declining, extinct, or not improving. An overarching theme across the Park’s terrestrial island vertebrate populations is that many of them are in good condition because the particular animals are habitat generalists, so their population dynamics are not strongly tied to habitat conditions. However, those landbirds associated with riparian vegetation are not showing signs of recovery across the Park islands, and riparian areas appear to be one of the habitats with limited natural recovery potential on the islands. Overwhelmingly, the most critical data gap that emerged from our analysis was the lack of current vegetation maps for most of the islands (AI, SCI, SRI, SMI). The lack of this information made it difficult to assess spatial changes in island vegetation over time, and to relate those changes to observed changes in vertebrate species abundances. Therefore, we were limited in our spatial assessment of vegetation recovery for AI, SCI, SRI, and SMI, and were only able to relate the current vegetation with island landbird analysis for SBI. Another common theme across islands was the lack of information on best techniques for shrub reintroduction and recovery, and the success of invasive species removal and re-vegetation efforts. Abundance, distribution, and habitat affinities of reptiles and amphibians are poorly known for AI, SCI, SRI, and SMI, making it difficult to assess their population condition and trends, and their potential responses to shrub recovery. Mammal and landbird populations are reasonably well-sampled across most of the islands, but data are lacking for most vertebrates from AI, especially West and Middle AI where no vertebrate sampling occurs. The population status, cause of declines, and recovery needs are lacking for several landbird species across multiple islands, including loggerhead shrikes ( Lanius ludovicianus ssp.) on SCI and SRI, and Santa Cruz Island rufous crowned sparrows ( Aimophila ruficeps obscura ) on AI. Additionally, island song sparrows ( Melospiza melodia graminea ) remain extirpated on SBI and data are needed for assessing their recovery potential on the island. The potentially major threats facing the islands’ flora and fauna today are: areas of continued erosion, potential new non-native introductions, and climate change. The Park islands have already experienced warming over the last several decades due to human-induced climate change, and are projected to experience continued warming. These increasing stresses imposed by climate change may slow and inhibit natural recovery potentials for island fauna, and especially flora.

California

Matching seed to site by climate similarity: techniques to prioritize plant materials development and use in restoration

Land management agencies are increasing the use of native plant materials for vegetation treatments to restore ecosystem function and maintain natural ecological integrity. This shift toward the use of natives has highlighted a need to increase the diversity of materials available. A key problem is agreeing on how many, and which, new accessions should be developed. Here we describe new methods that address this problem. Our methods use climate data to calculate a climate similarity index between two points in a defined extent. This index can be used to predict relative performance of available accessions at a target site. In addition, the index can be used in combination with standard cluster analysis algorithms to quantify and maximize climate coverage (mean climate similarity), given a modeled range extent and a specified number of accessions. We demonstrate the utility of this latter feature by applying it to the extents of 11 western North American species with proven or potential use in restoration. First, a species-specific seed transfer map can be readily generated for a species by predicting performance for accessions currently available; this map can be readily updated to accommodate new accessions. Next, the increase in climate coverage achieved by adding successive accessions can be explored, yielding information that managers can use to balance ecological and economic considerations in determining how many accessions to develop. This approach identifies sampling sites, referred to as climate centers, which contribute unique, complementary, climate coverage to accessions on hand, thus providing explicit sampling guidance for both germplasm preservation and research. We examine how these and other features of our approach add to existing methods used to guide plant materials development and use. Finally, we discuss how these new methods provide a framework that could be used to coordinate native plant materials development, evaluation, and use across agencies, regions, and research groups.

Ecological Applications

Controlling the spread of invasive species while sampling

Invasive species have a substantial impact on natural resource management. The economic cost of invasive species to people in the United States is an estimated US$137 billion annually (Pimental et al. 2000). The environmental cost is much greater and usually incalculable (Pimental et al. 2005). Nearly half of the plant and animal species federally listed in the United States' Endangered Species Act are threatened or endangered primarily as a consequence of invasive species that directly prey on native species or outcompete them for limited resources (Wilcove et al. 1998; Pimental et al. 2005) The result is reduced population numbers and, sometimes, local extinction of native plants and animals (Pimental at al. 2005). Such environmental damage is often irreparable. As natural resource managers, it is our responsibility to manage and conserve valuable natural resources. However, if our focus is limited to specific projects and tasks at hand, we may overlook the broader ramifications of our actions and unintentionally contribute to the invasive species problem. This chapter focuses on measures that should be taken to present, minimize, or control the spread of invasive species in the routine work we do as natural resource professionals. Inadvertently transporting potentially harmful organisms undermines our purposed as natural resource professionals. It is imperative that we understand that pathways that we create and strive to eliminate (when possible) or minimize the potential damage that may result from our actions. A combination of technologies, education, codes of conduct, and government overshot, as recommended by the Ecological Society of America, can prevent invasive species introductions from pathways that already exist (Lodge et al. 2006). In the long run, a purposeful prevention strategy for stopping unintentional species introductions will promote responsible natural resource management and will help us to achieve agency goals.

Book chapter

Effects of a drawdown on plant communities in a freshwater impoundment at Lacassine National Wildlife Refuge, Louisiana

Disturbance is an important natural process in the creation and maintenance of wetlands. Water depth manipulation and prescribed fire are two types of disturbance commonly used by humans to influence vegetation succession and composition in wetlands with the intention of improving wildlife habitat value. A 6,475-hectare (ha) impoundment was constructed in 1943 on Lacassine National Wildlife Refuge in southwest Louisiana to create freshwater wetlands as wintering waterfowl habitat. Ten years after construction of the impoundment, called Lacassine pool, was completed, refuge staff began expressing concerns about increasing emergent vegetation cover, organic matter accumulation, and decreasing area of open water within the pool. Because the presence of permanent standing water impedes actions that can address these concerns, a small impoundment within the pool where it was possible to manipulate water depth was created. The 283-ha subimpoundment called Unit D was constructed in 1989. Water was pumped from Unit D in 1990, and the unit was permanently reflooded about 3 years later. Four prescribed fires were applied during the drawdown. A study was initiated in 1990 to investigate the effect of the experimental drawdown on vegetation and soils in Unit D. Four plant community types were described, and cores were collected to measure the depth of the soil organic layer. A second study of Unit D was conducted in 1997, 4 years after the unit was reflooded, by using the same plots and similar sampling methods. This report presents an analysis and synthesis of the data from the two studies and provides an evaluation of the impact of the management techniques applied. We found that plant community characteristics often differed among the four communities and varied with time. Species richness increased in two of the communities, and total aboveground biomass increased in all four during the drawdown. These changes, however, did not persist when Unit D was reflooded; by 1997, species richness and aboveground biomass were equivalent to values before the drawdown. The change in waterfowl food value of the plant communities during the drawdown varied; it did not change in two communities, increased in one, and decreased in one. A consistent pattern noted was that waterfowl food value was higher in communities that contained open water than in those dominated by emergent plants, both soon after the drawdown was initiated in Unit D and 4 years after reflooding. A reduction in depth of the soil organic layer became apparent 20 months after drawdown was initiated, and this reduction persisted in 1997, 4 years after reflooding. A separate 2003 study on soil characteristics in Lacassine pool found that the depth to the clay layer was lower in Unit D than in the rest of the pool. We were not able to establish a cause-and-effect relation between any changes noted and the fact water levels in the unit were drawn down because the initial study in 1990 did not include control plots. Changes in vegetation and soil organic layer depth identified in Unit D may have occurred in the surrounding Lacassine pool habitat as well. Similarly, we were unable to form any conclusions about the effect of the prescribed fire treatments because there was no information on which plots were burned. Because of the known relation between anaerobic soil conditions and reduced decomposition of organic matter, however, it is likely that the drawdown in Unit D resulted in an increased decomposition rate and a reduction in the depth of the soil organic layer.

Louisiana

Use of restored riparian habitat by the endangered least Bell's vireo (Vireo bellii pusillus)

A primary objective of riparian restoration in California is the creation of habitat for endangered species. Four restoration sites in San Diego County were monitored between 1989 and 1993 and evaluated for their suitability as nesting habitat for Vireo bellii pusillus (Least Bell's Vireo), a state and federally endangered obligate riparian breeder. Vegetation structure at each site was quantified annually and compared to a model of canopy architecture derived from Least Bell's Vireo territories in natural habitat. Vireo use of restored habitat was documented through systematic surveys and nest monitoring. By 1993, only one site in its entirety met the habitat suitability criteria of the model, but portions of each site during all years did so. Differences between sites in the time required to develop suitable habitat—well-developed layered vegetation from the ground to under 8m in height)—were attributable largely to variation in annual rainfall. Vireos visited restoration sites to forage as early as the first growing season, but they did not establish territories or nest there until at least part of the site supported suitable habitat as determined from the model. Placement of territories and nests coincided with patches of dense vegetation characteristic of natural nesting areas. Occupation of restored sites was accelerated by the presence of adjacent mature riparian habitat, which afforded birds nest sites and/or foraging habitat lacking in the planted vegetation. Vireos nesting in restored habitat achieved success comparable to that of vireos nesting in surrounding natural habitat, and there was no evidence that productivity was reduced in created areas. These findings indicate that creating nesting habitat for this target species is feasible and suggest that the critical components of vireo nesting habitat have been captured in both the design and quantitative assessment of restoration sites.

Restoration Ecology

Atlantic white cedar plantings in St. Tammany Parish, Louisiana, and the Bogue Chitto National Wildlife Refuge, Mississippi

Populations of Atlantic white cedar (Chamaecyparis thyoides (L.) B.S.P.) growing at the extreme western range of the species are in danger of being lost, and information on the ecology of these populations is limited. Seeds and seedlings ("wildlings") were collected near Vancleave, MS. The wildlings were transplanted to bay-head sites on Bogue Chitto National Wildlife Refuge where canopy gaps had been created in early 1989. Seeds were germinated, grown in a greenhouse, and transplanted a year later to three locations within a slash pine plantation: a bedded and fertilized site, the margin of a cypress pond, and a wet gap, in St. Tammany Parish, Lousiana. These plantings were established to study survival and growth in different habitat types, to compare seedlings grown from seed versus transplanted wildlings, and to attempt to generate some interest in planting Atlantic white-cedar in the extreme western portion of its natural range. Overall seedling survival averaged 94 percent after five growing seasons, although significant differences were detected among sites. Mean height per site in 1994 was significantly greater at the bedded and fertilized site (233 centimeters), and lowest at the slash pine site (91 centimeters). Growth at the cypress pond site was intermediate (158 centimeters). Wildlings at the bay-head sites had lower survival rates (75 and 64 percent), but average heights for the two sites were similar to those of the seedlings (265 and 165 centimeters). These results show that plantings involving either local seed or wildlings are viable choices for regenerating Atlantic white-cedar in southern Mississippi and eastern Louisiana.

Louisiana; Mississippi

Coefficients of conservatism for the vascular flora of the Dakotas and adjacent grasslands

Floristic quality assessment can be used to identity natural areas, to facilitate comparisons among different sites, to provide long-term monitoring of natural area quality, and to evaluate habitat management and restoration efforts. To facilitate the use of floristic quality assessment in North Dakota, South Dakota (excluding the Black Hills), and adjacent grasslands, we developed a species list and assigned coefficients of conservatism (C values; range 0 to 10) to each plant species in the region's flora. The C values we assigned represented our collective knowledge of the patterns of occurrence of each plant species in the Dakotas and our confidence that a particular taxon is natural-area dependent. Because state boundaries usually do not follow ecological boundaries, the C values we assigned should be equally valid in nearby areas with the same vegetation types. Of the 1,584 taxa we recognized in this effort, 275 (17%) were determined to be nonnative to the region. We assigned C values of 4 or higher to 77% of our taxa, and the entire native flora had a mean C value (C) of 6.l. A floristic quality index (FQI) can be calculated to rank sites in order of their floristic quality. By applying the coefficients of conservatism supplied here and calculating C and FQI, an effective means of evaluating the quality of plant communities can be obtained. Additionally, by repeating plant surveys and calculations of C and FQI over time, temporal changes in floristic quality can be identified.

North Dakota, South Dakota

Contribution of natural history collection data to biodiversity assessment in national parks

There has been mounting interest in the use of museum and herbaria collections to assess biodiversity; information is often difficult to locate and access, however, and few recommendations are available for effectively using natural history collections. As part of an effort to inventory vertebrates and vascular plants in U.S. national parks, we searched manually and by computer for specimens originating within or adjacent to 14 parks throughout the northeastern United States. We compared the number of specimens located to collection size to determine whether there was any effect on detection rate of specimens. We evaluated the importance of park characteristics (e.g., age since establishment, size, theme [natural vs. cultural]) for influencing the number of specimens found in a collection. We located >31,000 specimens and compiled associated records (hereafter referred to as specimens) from 78 collections; >9000 specimens were park-significant, originating either within park boundaries or in the local township where the park was located. We found >2000 specimens by means of manual searches, which cost $0.001–0.15 per specimen searched and $0.81–151.95 per specimen found. Collection effort appeared relatively uniform between 1890 and 1980, with low periods corresponding to significant sociopolitical events. Detection rates for specimens were inversely related to collection size. Although specimens were most often located in collections within the region of interest, specimens can be found anywhere, particularly in large collections international in scope, suggesting that global searches will be necessary to evaluate historical biodiversity. Park characteristics indicated that more collecting effort occurred within or adjacent to larger parks established for natural resources than in smaller historical sites. Because many institutions have not yet established electronic databases for collections, manual searches can be useful for retrieving specimens. Our results show that thorough, systematic searching of natural history collections for park-significant specimens can provide a historical perspective on biodiversity for park managers.

Conservation Biology

Short-term disruption of a leafy spurge (Euphorbia esula) biocontrol program following herbicide application

Integrated pest management (IPM) for invasive plant species is being advocated by researchers and implemented by land managers, but few studies have evaluated the success of IPM programs in natural areas. We assessed the relative effects of components of an IPM program for leafy spurge (Euphorbia esula), an invasive plant, at Theodore Roosevelt National Park, North Dakota. Effects of herbicides on leafy spurge abundance and on dynamics of flea beetles (Aphthona spp.) used to control leafy spurge were evaluated over three field seasons following herbicide application. We monitored leafy spurge-infested plots with established flea beetle populations that had received picloram plus 2,4-D in September 1997 or 1998, imazapic in September 1998, versus those with no chemical treatment. Mature stem counts did not differ significantly between treated and untreated plots in 2001, suggesting that leafy spurge stands had recovered from herbicide treatment. Flea beetles were less abundant on plots with a history of herbicide treatment. Structural equation models indicated that in 2000 negative correlations between relative abundances of the two flea beetle species were greater on plots that had received herbicide treatments than on those that had not, but by 2001 no differences were apparent between treated and untreated plots. These results suggest that the most effective component of IPM for leafy spurge at this site is biological control. All herbicide effects we observed were short-lived, but the increased negative correlation between flea beetle relative abundances during 2000 implies that herbicide application may have temporarily disrupted an effective biological control program at this site. ?? 2006 Elsevier Inc. All rights reserved.

Biological Control

Next-generation technologies unlock new possibilities to track rangeland productivity and quantify multi-scale conservation outcomes

Historically, relying on plot-level inventories impeded our ability to quantify large-scale change in plant biomass, a key indicator of conservation practice outcomes in rangeland systems. Recent technological advances enable assessment at scales appropriate to inform management by providing spatially comprehensive estimates of productivity that are partitioned by plant functional group across all contiguous US rangelands. We partnered with the Sage Grouse and Lesser Prairie-Chicken Initiatives and the Nebraska Natural Legacy Project to demonstrate the ability of these new datasets to quantify multi-scale changes and heterogeneity in plant biomass following mechanical tree removal, prescribed fire, and prescribed grazing. In Oregon's sagebrush steppe, for example, juniper tree removal resulted in a 21% increase in one pasture's productivity and an 18% decline in another. In Nebraska's Loess Canyons, perennial grass productivity initially declined 80% at sites invaded by trees that were prescriptively burned, but then fully recovered post-fire, representing a 492% increase from nadir. In Kansas' Shortgrass Prairie, plant biomass increased 4-fold (966,809 kg/ha) in pastures that were prescriptively grazed, with gains highly dependent upon precipitation as evidenced by sensitivity of remotely sensed estimates (SD ± 951,308 kg/ha). Our results emphasize that next-generation remote sensing datasets empower land managers to move beyond simplistic control versus treatment study designs to explore nuances in plant biomass in unprecedented ways. The products of new remote sensing technologies also accelerate adaptive management and help communicate wildlife and livestock forage benefits from management to diverse stakeholders.

Kansas, Nebraska, Oregon

Vascular plant and vertebrate species richness in national parks of the eastern United States

Given the estimates that species diversity is diminishing at 50-100 times the normal rate, it is critical that we be able to evaluate changes in species richness in order to make informed decisions for conserving species diversity. In this study, we examined the potential of vascular plant species richness to be used as a surrogate for vertebrate species richness in the classes of amphibians, reptiles, birds, and mammals. Vascular plants, as primary producers, represent the biotic starting point for ecological community structure and are the logical place to start for understanding vertebrate species associations. We used data collected by the United States (US) National Park Service (NPS) on species presence within parks in the eastern US to estimate simple linear regressions between plant species richness and vertebrate richness. Because environmental factors may also influence species diversity, we performed simple linear regressions of species richness versus natural logarithm of park area, park latitude, mean annual precipitation, mean annual temperature, and human population density surrounding the parks. We then combined plant species richness and environmental variables in multiple regressions to determine the variables that remained as significant predictors of vertebrate species richness. As expected, we detected significant relationships between plant species richness and amphibian, bird, and mammal species richness. In some cases, plant species richness was predicted by park area alone. Species richness of mammals was only related to plant species richness. Reptile species richness, on the other hand, was related to plant species richness, park latitude and annual precipitation, while amphibian species richness was related to park latitude, park area, and plant species richness. Thus, plant species richness predicted species richness of different vertebrate groups to varying degrees and should not be used exclusively as a surrogate for vertebrate species richness. Plant species richness should be included with other variables such as area and climate when considering strategies to manage and conserve species in US National Parks. It is not always appropriate to draw conclusions about analyses of taxonomic surrogates from one area to another. Two patterns evident from the linear regressions were the increase in species richness with the increase of park area and with increase of vascular plant species richness. To test whether there were differences in these patterns among networks, we used analysis of covariance (ANCOVA). Differences among networks were detected only in bird species richness versus plant species richness and for all taxa except mammals for vertebrate species richness versus park area. Some of these results may be due to small sample size among networks, and therefore, low statistical power. Other factors that could have contributed to these results were differences in average park area and habitat heterogeneity among networks, latitudinal gradients, low variation in mean annual precipitation, and different use of vegetation by migratory species. Based on these results we recommend that management of biodiversity be approached from local and site specific criteria rather than applying management directives derived from other regions of the US. It is also recommended that analyses similar to those presented here be conducted for all national parks, once data become available for all networks in the US, to gain a better understanding of how vascular plant species richness, area, and vertebrate species richness are related in the US.

Natural Resource Technical Report NPS/NCR/NCRO/NRT

Vascular Plant and Vertebrate Inventory of Saguaro National Park, Tucson Mountain District

This report summarizes the results of the first comprehensive inventory of plants and vertebrates at the Tucson Mountain District (TMD) of Saguaro National Park, Arizona. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at the district to document the presence of species within its boundaries. Park staff also carried out extensive infrared-triggered camera work for medium and large mammals from 2002-2005 and results from that effort are reported here. Our spatial sampling design for all taxa employed a combination of random and nonrandom survey sites. Survey effort was greatest for medium and large mammals and herpetofauna. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the district. We also provide an overview of previous survey efforts in the district. We use data from our inventory and other surveys to compile species lists and to assess inventory completeness. The survey effort for herpetofauna, birds, and medium and large mammals was the most comprehensive ever undertaken in the district. We recorded a total of 320 plant and vertebrate species, including 21 species not previously found in the district (Table 1). Based on a review of our inventory and past research at the district, there have been a total of 723 species of plants and vertebrates found there. We believe inventories for most taxonomic groups are nearly complete. Based on our surveys, we believe the native plant and vertebrate community compositions of the district are relatively intact, though some species loss has occurred and threats are increasing, particularly to herpetofauna and larger mammals. Of particular note is the relatively small number of non-native species and their low abundance in the district, which is in contrast to many nearby natural areas. Rapidly expanding development on the west, north, and east sides of the district is cause for concern that the park continue its commitment to environmental restoration, which is largely responsible for reducing the threats posed by non-native plants. With continued maintenance of natural processes and the ecological structure of the park's biodiversity, the park will become an increasingly important place to both the general public and the scientific community. This report supersedes results reported in Powell et al. (2002, 2003).

Open-File Report

Neural network-based nonlinear model predictive control vs. linear quadratic gaussian control

One problem with the application of neural networks to the multivariable control of mineral and extractive processes is determining whether and how to use them. The objective of this investigation was to compare neural network control to more conventional strategies and to determine if there are any advantages in using neural network control in terms of set-point tracking, rise time, settling time, disturbance rejection and other criteria. The procedure involved developing neural network controllers using both historical plant data and simulation models. Various control patterns were tried, including both inverse and direct neural network plant models. These were compared to state space controllers that are, by nature, linear. For grinding and leaching circuits, a nonlinear neural network-based model predictive control strategy was superior to a state space-based linear quadratic gaussian controller. The investigation pointed out the importance of incorporating state space into neural networks by making them recurrent, i.e., feeding certain output state variables into input nodes in the neural network. It was concluded that neural network controllers can have better disturbance rejection, set-point tracking, rise time, settling time and lower set-point overshoot, and it was also concluded that neural network controllers can be more reliable and easy to implement in complex, multivariable plants.

Mining, Metallurgy & Exploration (MME)

The role of natural history collections in documenting species declines

Efforts to document the decline of extant populations require a historical record of previous occurrences. Natural history museums contain such information for most regions of the world, at least at a coarse spatial scale. Museum collections have been successfully used to analyse declines in a wide range of plants and animals, at spatial scales ranging from single localities to large biotic and political regions. Natural history museum collections, when properly analysed, can be an invaluable tool in documenting changes in biodiversity during the past century.

Trends in Ecology and Evolution

The geochemist’s involvement with the pollution problem

The geochemist can contribute much information of value toward assessing the effect of environment, including inorganic pollution, on health. The average composition of rocks, soils, plants, and water and also the increments of inorganic substances that can be expected in geologic environments of high-metal content are essential for comparison with metal contents of these components of the environment in areas contaminated by various types of inorganic air and water pollution. Background levels of lead, zinc, nickel, chromium, copper, and manganese in soils and in four classes of vegetation have been estimated from collections that were made in remote areas presumed to be free from inorganic contamination. The trace-metal content of soils and plants varies widely in different geologic provinces of the United States; in those areas of high natural mineralization, additions of metals from man-made pollution may compound a possible hazard. Results of sampling in urban areas show that contamination of vegetation by gasoline lead can be expected for at least 1000 ft back from transportation lanes, and that the lead burden is increasing greatly with time. Ore-treatment plants can also be a source of air contamination for several miles downwind and several thousand feet in other directions. Soils of naturally high metal content in a mining district may be further contaminated with both major and minor elements from smelting operations. Recent studies show that volatile elements are released directly to the air from ore deposits in place. Concentrations of mercury, for instance, may be as much as 20 times background for several hundred feet in altitude over ore deposits in which mercury occurs as a relatively minor constituent. The source of inorganic pollution in surface drainage and also in ground water is commonly geologic, as rivers may be contaminated from coal and metal deposits in place and also from mining and smelting operations. More information of the type illustrated should be accumulated and made available to scientists who are working in environmental health, and, in particular, to those involved in the pollution problem. Only by these means can we provide a scientific basis for the enactment of realistic and effective legislation for pollution control.

Book chapter

Zinc hazards to plants and animals with emphasis on fishery and wildlife resources

Ecological and toxicological aspects of zinc in the environment are reviewed with emphasis on natural resources. Subtopics include sources and uses; chemical and biochemical properties; carcinogenicity, mutagenicity, teratogenicity; background concentrations in biological and nonbiological compartments; effects of zinc deficiency; toxic and sublethal effects on terrestrial plants and invertebrates, aquatic organisms, birds, and mammals; and recommendations for the protection of sensitive resources.

Book chapter

Borehole geophysical logs at Naval Weapons Industrial Reserve Plant, Dallas, Texas

A shallow alluvial aquifer at the Naval Weapons Industrial Reserve Plant near Dallas, Texas, has been contaminated by organic solvents used in the fabrication and assembly of aircraft and aircraft parts. Natural gamma-ray and electromagnetic-induction borehole geophysical logs were obtained from 162 poly vinyl-chloride-cased wells at the plant and were integrated with existing lithologic data to improve site characterization of the subsurface alluvium. Software was developed for filtering and classifying the log data and for processing, analyzing, and creating graphical output of the digital data. The alluvium consists of mostly fine-grained low-permeability sediments; however for this study, the alluvium was classified into low, intermediate, and high clay-content sediments on the basis of the gamma-ray logs. The low clay-content sediments were interpreted as being relatively permeable, whereas the high clay-content sediments were interpreted as being relatively impermeable. Simple statistics were used to identify zones of potentially contaminated sediments on the basis of the gamma-ray log classifications and the electromagnetic-induction log conductivity data.

Texas