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Determination of per- and polyfluoroalkyl substances in water by direct injection of matrix-modified centrifuge supernatant and liquid chromatography/tandem mass spectrometry with isotope dilution

A direct-injection liquid chromatography/tandem mass spectrometry method was developed to determine 34 per- and polyfluoroalkyl substances (PFAS), including selected branched isomers, in centrifuge supernatant of matrix-modified (amended with approximately 50 percent methanol) water samples. The method has been validated in reagent water, surface water, groundwater, and wastewater effluent. Other water types (for example, drinking water, untreated wastewater, and landfill leachate) have been analyzed by the method but not systematically validated. Recovery of isotope-dilution standards, added to each sample, may be used to assess method performance in nonvalidated matrices on a sample-by-sample basis. Using this method, PFAS concentrations were determined in the range of 2–2,000 nanograms per liter in water samples. This range can be extended by diluting concentrated samples. At circumneutral pH, most compounds are present in the environment in their ionized form, and data are reported as such (for example, perfluorooctanoic acid is referred to as “perfluorooctanoate” [PFOA], perfluorooctane sulfonic acid is referred to as “perfluorooctane sulfonate” [PFOS]). Sample preparation procedures were designed without the use of filtration and with minimum sample handling steps to mitigate procedural losses of target compounds due to sorption to surfaces. Further, isotope-dilution quantification allowed for the correction of bias that may result from procedural losses, matrix-induced signal suppression or enhancement, and other factors. Validation experiments to characterize bias and variability, method detection level, and holding time were done in four distinct water matrices—reagent water, surface water, treated wastewater effluent, and groundwater—at multiple concentration levels. Mean PFAS recoveries met data quality objectives of bias and variability studies in all four validation matrices except for two compounds with low and variable recovery in the reagent water matrix only. Isotope-dilution standards, treated as surrogate compounds, were analyzed in more than 1,500 customer-submitted environmental samples with aggregate recovery of 102.5±6.5 percent (mean±standard deviation). Maximum holding times for all target compounds in the four validation matrices were 28 days for refrigerated samples and 90 days for frozen samples.

Techniques and Methods

Ground-water flow in the surficial aquifer system and potential movement of contaminants from selected waste-disposal sites at Naval Station Mayport, Florida

Ground-water flow through the surficial aquifer system at Naval Station Mayport near Jacksonville, Florida, was simulated with a two-layer finite-difference model as part of an investigation conducted by the U.S. Geological Survey. The model was calibrated to 229 water-level measurements from 181 wells during three synoptic surveys (July 17, 1995; July 31, 1996; and October 24, 1996). A quantifiable understanding of ground-water flow through the surficial aquifer was needed to evaluate remedial-action alternatives under consideration by the Naval Station Mayport to control the possible movement of contaminants from sites on the station. Multi-well aquifer tests, single-well tests, and slug tests were conducted to estimate the hydraulic properties of the surficial aquifer system, which was divided into three geohydrologic units�an S-zone and an I-zone separated by a marsh-muck confining unit. The recharge rate was estimated to range from 4 to 15 inches per year (95 percent confidence limits), based on a chloride-ratio method. Most of the simulations following model calibration were based on a recharge rate of 8 inches per year to unirrigated pervious areas. The advective displacement of saline pore water during the last 200 years was simulated using a particle-tracking routine, MODPATH, applied to calibrated steady-state and transient models of the Mayport peninsula. The surficial aquifer system at Naval Station Mayport has been modified greatly by natural and anthropogenic forces so that the freshwater flow system is expanding and saltwater is being flushed from the system. A new MODFLOW package (VAR1) was written to simulate the temporal variation of hydraulic properties caused by construction activities at Naval Station Mayport. The transiently simulated saltwater distribution after 200 years of displacement described the chloride distribution in the I-zone (determined from measurements made during 1993 and 1996) better than the steady-state simulation. The advective movement of contaminants from selected sites within the solid waste management units to discharge points was simulated using MODPATH. Most of the particles were discharged to the nearest surface-water feature after traveling less than 1,000 feet in the ground-water system. Most areas within 1,000 feet of a surface-water feature or storm sewer had traveltimes of less than 50 years, based on an effective porosity of 40 percent. Contributing areas, traveltimes, and pathlines were identified for 224 wells at Naval Station Mayport under steady-state and transient conditions by back-tracking a particle from the midpoint of the wetted screen of each well. Traveltimes to contributing areas that ranged between 15 and 50 years, estimated by the steady-state model, differed most from the transient traveltime estimates. Estimates of traveltimes and pathlines based on steady-state model results typically were 10 to 20 years more and about twice as long as corresponding estimates from the transient model. The models differed because the steady-state model simulated 1996 conditions when Naval Station Mayport had more impervious surfaces than at any earlier time. The expansion of the impervious surfaces increased the average distance between contributing areas and observation wells.

Florida

Regionalization of low-flow characteristics of Tennessee streams

Procedures for estimating 3-day 2-year, 3-day 10-year, 3-day 20-year, and 7-day 10-year low flows at ungaged stream sites in Tennessee are based on surface geology and drainage area size. One set of equations applies to west Tennessee streams, and another set applies to central and east Tennessee streams. The equations do not apply to streams where flow is significantly altered by activities of man. Standard errors of estimate of equations for west Tennessee are 24 to 32% and for central and east Tennessee 31 to 35%. Streamflow recession indexes, in days/log cycle, are used to account for effects of geology of the drainage basin on low flow of streams. The indexes in Tennessee range from 32 days/log cycle for clay and shale to 350 days/log cycle for gravel and sand, indicating different aquifer characteristics of the geologic units that sustain streamflows during periods of no surface runoff. Streamflow recession rate depends primarily on transmissivity and storage characteristics of the aquifers, and the average distance from stream channels to basin divides. Geology and drainage basin size are the most significant variables affecting low flow in Tennessee streams according to regression analyses. (Author 's abstract)

Tennessee

Analyzing multi-year nitrate concentration evolution in Alabama aquatic systems using a machine learning model

Rising nitrate contamination in water systems poses significant risks to public health and ecosystem stability, necessitating advanced modeling to understand nitrate dynamics more accurately. This study applies the long short-term memory (LSTM) modeling to investigate the hydrologic and environmental factors influencing nitrate concentration dynamics in rivers and aquifers across the state of Alabama in the southeast of the United States. By integrating dynamic data such as streamflow and groundwater levels with static catchment attributes, the machine learning model identifies primary drivers of nitrate fluctuations, offering detailed insights into the complex interactions affecting multi-year nitrate concentrations in natural aquatic systems. In addition, a novel LSTM-based approach utilizes synthetic surface water nitrate data to predict groundwater nitrate levels, helping to address monitoring gaps in aquifers connected to these rivers. This method reveals potential correlations between surface water and groundwater nitrate dynamics, which is particularly meaningful given the lack of water quality observations in many aquifers. Field applications further show that, while the LSTM model effectively captures seasonal trends, limitations in representing extreme nitrate events suggest areas for further refinement. These findings contribute to data-driven water quality management, enhancing understanding of nitrate behavior in interconnected water systems.

Alabama

Surficial geology and Quaternary tectonics of the Madison Valley and fault zone, Madison, Gallatin, and Beaverhead Counties, southwest Montana

The north-northwest-striking Madison fault is approximately 95 kilometers in length, lying at the confluence of the northeastern Basin and Range province and the Yellowstone tectonic parabola. The fault zone consists primarily of west-dipping normal faults that have east-dipping antithetic faults, which create the Madison Valley graben and several northeast-trending intrabasin faults. The Madison fault and associated sections discussed herein refer to the main west-dipping, range-bounding fault along the eastern side of the valley. Detailed geologic mapping (1:12,000 scale) of the entire fault zone and fault scarp profiling (total of 102 profiles) of the Madison fault reveal greater late Quaternary paleoseismic activity towards the south, including at least three paleoevents along the southern part of the fault that postdate Pinedale glaciation. Early to middle Holocene alluvial fans have vertical surface offsets that average between 2.0 and 3.0 meters and define the characteristic single-event surface offset. Pinedale lateral moraines have vertical surface offsets as great as 12.0 meters. Late Pleistocene to Holocene multiple-event fault scarps show little evidence of beveling, suggesting short seismic recurrence intervals and potential late Pleistocene and Holocene temporal clustering. Long-term average tectonic activity rates indicate slip rates ranging from 0.18–0.6 millimeters per year. Based on a comparison of fault-scarp height versus maximum slope angle of known regression lines developed from other paleoseismic investigations, the most recent event ranges from 5–1 ka. The northern section of the fault zone is defined by multiple normal faults, which detached the hanging walls of Laramide thrust faults within the Paleozoic and Mesozoic strata. This resulted in the partitioning of extension along multiple preexisting structures and less displacement along individual normal fault strands. Structural controls on lateral propagation of individual paleoevents involve the position of lateral ramps along preexisting Laramide contractional faults. This resulted in greater displacement within the larger basement-cored structures along the southern section of the fault zone, where extension is accommodated by one inferred principal basement-involved normal fault. Inferred east-northeast trending, intrabasin, normal faults within the southern half of the fault zone have no late Pleistocene displacement.

Idaho, Montana, Wyoming

Enhanced hydrologic monitoring and characterization of groundwater drainage features

Groundwater drains to the land surface, generating the baseflow of streams, lakes, and wetlands. The hydrologic resilience of baseflow during prolonged dry periods and after disturbance can be assessed with evolving remote sensing analysis paired with localized monitoring of groundwater drainage features and creative model calibration strategies.

Nature Water

Investigation of land cover within wetland complexes at Dixie Meadows, Churchill County, Nevada, from October 2015 to January 2022

The U.S. Geological Survey investigated land cover at subannual time steps within six wetland areas in Dixie Valley, Churchill County, Nevada, from October 2015 to January 2022. As requested by the U.S. Fish and Wildlife Service, we used aerial photography and satellite remote sensing data to map surface water and other land cover types within the wetland complexes. We identified five land cover classes using the green normalized difference vegetation index (gNDVI) and its inverse relationship to the normalized difference water index (NDWI) within three U.S. Department of Agriculture National Agriculture Imagery Program aerial images (acquired in 2015, 2017, and 2019) and 110 European Space Agency Sentinel-2 satellite images (acquired 2015–2022). The relative wetness of soil conditions within each land cover class is estimated by comparison to previously published observations of relative conductivity measured by 79 field-based sensors within the wetlands from 2019 to 2021. We mapped the areal coverage of the five land cover classes for approximately 385 acres (1,559,000 square meters [m²]) comprising six individual wetland complexes as well as a larger 1,298- acre (5,254,000-m 2 ) area of interest inclusive of the wetland complexes and adjacent landscape. Land cover of open water (Class 5) primarily within ponds at one of the wetland complexes comprised 8,333 m 2 , on average, of the wetland complexes. Land cover of mixed shallow surface water, saturated soil, and vegetation (Class 4) comprised 111,723 m 2 on average of the wetland complexes. Land cover of dense green vegetation canopy cover (Class 3) that often (46 percent of observations) had underlying surface water or saturated soil conditions comprised 592,522 m 2 on average of the wetland complexes. The remaining areas of the wetland complexes not mapped as these three land cover types (Classes 2 and 1) had sparse vegetation or bare soil cover and commonly (greater than or equal to 67 percent of observations) had dry soil conditions. The investigation of land cover detailed in this report could inform future efforts to map land cover more precisely via higher resolution remote sensing or ground-based surveying or could be incorporated with other environmental monitoring data to characterize habitat and hydrology of the wetland complexes at Dixie Meadows.

Nevada

Arsenic and isotope concentrations in the lower Platte River valley of eastern Nebraska, early 1970s to 2023

The City of Lincoln, Nebraska, has been monitoring concentrations of arsenic in their source water and evaluating their options for treatment and removal since at least 2002. In 2022, the City of Lincoln, Nebr., with funding assistance from the Nebraska Water Sustainability Fund, began cooperating with the U.S. Geological Survey to examine arsenic concentrations in surface water and groundwater in the lower Platte River valley and the area around City of Lincoln Water System (LWS) well field. Arsenic data collected from the Platte River since 1974 were examined using the “weighted regression on time, discharge, and season” model, which compared the streamflow (also referred to as “discharge”), time of year, and season to estimate concentrations of arsenic. Annual mean arsenic concentrations modeled for more than 49 years at the Platte River at Louisville, Nebr., U.S. Geological Survey streamgage (station 06805500), indicated a significant increasing trend. Arsenic concentrations in the Platte River were seasonal, with the highest concentrations being observed during mid- to late summer. When seasonal patterns and streamflow were combined with arsenic concentrations in the Platte River during low streamflow conditions, groundwater contributions, which can have higher arsenic concentrations, make up a larger portion of the streamflow. Arsenic samples were collected from upstream rivers in 2022 and 2023 and were paired to analyze the arsenic contributions at the U.S. Geological Survey streamgage on the Platte River near Ashland, Nebr. (station 06801000), near the City of Lincoln well field. The arsenic concentrations from the streamgage on the Platte River near Ashland, Nebr., location, were higher than the U.S. Geological Survey streamgage on the Elkhorn River at Waterloo, Nebr. (station 06800500), and significantly lower than at the U.S. Geological Survey streamgage on the Platte River near Leshara, Nebr.(station 06796500), indicating that the Platte River usually contributes a higher concentration of arsenic than does the Elkhorn River as they join near Ashland, Nebr. During 1991–2023, six groundwater monitoring wells were analyzed to identify trends in arsenic concentrations. Two of the six wells had a positive trend during the 33-year period. One monitoring well did not reveal a long-term trend during this period but showed a trend during 2019–23, correlating to a period when the island in the middle of the Platte River was connected to the east bank of the river when manganese reducing conditions were present and groundwater levels were declining in the well. Across all wells the oxidation and reduction (redox) condition during the time of sampling was assessed. Mixed anoxic and (or) oxic redox condition was the most common redox process and the highest sampled arsenic concentrations in monitoring wells were observed in anoxic conditions driven by manganese reduction. Groundwater arsenic concentrations had seasonal variation around the City of Lincoln well field, with higher arsenic concentrations tending to be further south in comparison to samples collected further north. Isotope samples were collected and analyzed in surface water and groundwater around the LWS well field. The samples indicate that the proportion of surface water present in the LWS production wells can be higher in the spring and lower in the summer. With higher arsenic concentrations observed in the stream water during the summer period, the LWS source water can be affected by these elevated arsenic concentrations even though the proportion of surface water is lower.

Nebraska

Geohydrology of the Cross-Florida Barge Canal area, with special reference to the Ocala vicinity

The Cross-Florida Barge Canal route commences at Palatka on the St. Johns River, about 75 miles upstream from the Atlantic Ocean, and extends 110 miles southwestward across Peninsular Florida into deep water in the Gulf of Mexico near Yankeetown. The canal will be equipped with five locks, each 600 feet long and 84 feet wide, and the channel will be a minimum of 12 feet deep and 150 feet wide. From near Ocala northeastward, the canal channel will replace much of the natural channel of the Oklawaha River, and will be excavated into beds of the so-called shallow sand aquifer of Miocene age and younger, which overlies limestone of the Floridan aquifer. Westward from Ocala, most of the canal will be excavated below the potentiometric surface into limestone and dolomite of the Floridan aquifer. Water levels of Rodman, Eureka, and Inglis Pools will be controlled by dams and spillways with the limited exchange of water between the pools and the aquifers. The water levels in the Summit Pools will fluctuate with the natural changes in the ground-water level of the Floridan aquifer, although the stage of the pool will be controlled partly by the stage held in the Eureka Pool. A dynamic inflow-outflow relationship will exist between the Summit Pool and the Floridan aquifer. The Floridan aquifer in the canal area is 1,000 to 1,200 feet thick and consists of limestone and dolomite of middle Eocene Miocene age, including from older to younger, the Lake City, Avon Park, and Ocala limestones plus permeable sandy, dolomitic limestone in the lower part of the Hawthorn Formation. It is possible that most of the flow to the two major springs in the area occurs in the upper 100 feet or so of the aquifer in the Ocala Limestone. The aquifer is underlain by the Oldsmar limestone of early Eocene age and is overlain by sand, clayey sand, clay and shell beds of Miocene through Holocene age, in thickness from a few feet to 300 feet. The permeable beds overlying the Floridan aquifer constitute the shallow aquifer, while the poorly permeable ones act as confining beds where the Floridan aquifer is under artesian conditions. A north-south line drawn separating the head of Silver Springs on the west from the Oklawaha River on the east marks the approximate western limit of a continuous blanket of materials of Miocene-Pliocene(?) age covering the rocks of the Floridan aquifer. East of the line, much of the aquifer is under artesian conditions, particularly in the Oklawaha River valley, although in some areas east of the valley, direct recharge through thick permeable Miocene-Pliocene(?) sands occurs. West of the line, only scattered remnants of a once continuous Miocene-Pliocene(?) cover remain. Lack of the cover is a result of erosion on the crest and flank of the Ocala Uplift, a broad northwest-southeast trending anticlinal upwarp, the axis of which is crossed by the canal route in the Dunnellon area. Over most of this area the Floridan aquifer is unconfined and receives direct recharge through a cover of a few tens of feet of sand and clayey sand of Quaternary age. Tensional stresses during the structural evolution of the Ocala Uplift produced an intersecting system of fractures and normal faults in rocks of the Floridan aquifer. The fractures and faults are important controls for orientation of solution channels and, therefore, for development of ground-water circulation patterns. When the system surface streams, which once drained the Barge Canal area, eroded the poorly permeable Miocene-Pliocene(?) cover from the flanks of the Ocala Uplift, surface runoff was reduced and precipitation began to directly infiltrate the underlying limestones. Now only principal streams remain, such as the Oklawaha and Withlacoochee Rivers and a few short tributaries, while one of the most highly developed subsurface drainage systems in the world has evolved in cavernous limestone of the Floridan aquifer. Two of the larger freshwater springs in the world now discharge from the Floridan aquifer in the canal area. Silver Springs near Ocala discharges an average 531 mgd (million gallons per day) down the 4-mile long Silver River, which flows on poorly permeable beds to the Oklawaha River. Rainbow Springs near Dunnellon discharges on average 468 mgd from numerous orifices in the bed of the 5-mile-long Rainbow River, which flows into the Withlacoochee River. The heads of the springs have migrated to their present positions partly because of a tendency of ground-water levels to decline as permeability in the aquifer is increased due to removal of limestone by solution, and because of mechanical erosion of the limestone in the vicinity of the spring heads. Also, points of principal spring discharges have shifted in the past due to changes in ground-water levels in response to changes in sea level. The subsurface drainage system is continuing to evolve today, as evidenced in part by frequent occurrence of new sinkholes and by the presence of significant amounts of calcium bicarbonate in the spring waters. Rodman Pool, at the east end of the canal, is separated from the Floridan aquifer by poorly permeable materials. The pool's operating water level will be only a few feet above the potentiometric surface at the downstream end, and at or slightly below the potentiometric surface at the upstream end. Little exchange of water between the Rodman Pool and the Floridan aquifer is expected. Eureka Pool, just upstream from Rodman Pool, will also be separated from the Floridan aquifer by poorly permeable beds. However, the stage of the pool will be about 15 feet higher than the natural potentiometric surface at the pool's downstream end, and some seepage into the Floridan aquifer is anticipated through faults and leaky parts of the poorly permeable beds, with a consequent rise in ground-water levels in areas adjacent to the lower end of the pool. Possibilities for particulate contamination of the aquifer will tend to be minimized because of the filtering capacity of the materials through which water must pass to reach the aquifer, although the natural filter will not preclude movement into the aquifer of contaminants which might become dissolved in the pool waters. No significant interchange of water between the pool and the aquifer is expected at the upstream end of the Eureka Pool. Present construction plans indicate an operating stage for Eureka Pool which will range between 38 and 40 feet above mean sea level, although it is possible to dredge the pool deep enough to permit a range in stage of 36 to 40 feet. A backwater effect extending up Silver River from the Eureka Pool is expected to regulate the stage at the head of Silver Springs between 39 and 44 feet above mean sea level if the pool ranges between 36 and 40 feet. If Eureka Pool ranges only between 38 and 40 feet, the range of stage at the head of the springs should be about 41 to 44 feet above mean sea level. From Inglis Lock west, the canal will have direct connection with the Gulf, and canal stage will fluctuate with the Gulf tide. Since the canal stage will be slightly lower than the adjacent ground-water levels along much of the reach, there will be some ground-water inflow to the canal. No significant changes in the existing ground-water regime are expected in the vicinity of Inglis Pool, the first step up in the canal east of the Gulf. Existing ground-water and surface-water levels in the area will not change appreciable, and the natural stage and flow of Rainbow Springs, which will flow by way of Rainbow River into Inglis Pool, should not be affected by canal operations. A possible adverse effect of the canal on the Inglis Pool area could result if sea water is locked up from the Gulf through Inglis Lock. However, the high step of 25 feet at the lock, flushing action of continuous flow from Inglis Pool to the lower reaches of the Withlacoochee River, and use of possible preventive locking procedures should minimize the problem. The potential for adverse effects on the ground-water regime is greatest in the area of the Summit Pool. Through most of the length of the pool, the canal channel will be excavated into limestone of the Floridan aquifer to depths of 12 to 27 feet below the potentiometric surface. Changes that will take place in the ground-water flow system in the Silver Springs drainage area, once the canal is completed, were estimated by flow-net analysis. Variation in aquifer transmissivity was determined by calculating transmissivity in 25 different flow cells surrounding Silver Springs. Transmissivity in the 25 cells averages about 15,600,000 gpd/ft [2,090,000 ft2/day (feet squared)], but transmissivity in the six cells through which the Summit Pool passes ranges from 9,000,000 to 44,000,000 gpd/ft (1,210,000 to 5,900,000 ft2/day). Transmissivity was used to compute static stage of the Summit Pool under given ground-water level conditions. Had the canal existed in May 1968 and had the stage of Eureka Pool been held at 36 feet at the time, the static stage in Summit Pool would have been about 42.1 feet above mean sea level. Thus, a conceptual model of the changes in the potentiometric surface wrought by the finished canal was drawn, and zones of ground-water inflow and outflow were delineated. Most outflow from the Summit Pool to the aquifer should be limited to one 4-mile-long zone along the north side of the pool, about 5 miles south of Silver Springs. It is estimated that a water volume equivalent to about 8 percent of the daily flow of Silver Springs will enter the Summit Pool each day from the southern one-third of the Silver Springs drainage area. A like amount will reenter the aquifer at the main zone of outflow and move toward Silver Springs at an estimated average velocity of about 200 feet per day, if something close to the natural static stage of the pool is maintained by return pumpage of the lockage losses. At a velocity of 200 feet per day, water from the Summit Pool would discharge at Silver Springs about 140 days later. However, any estimate of velocity in the highly cavernous limestone aquifer in the area should be used with caution, because difficult to measure changes in porosity and thickness of major zones of flow may cause large variations in velocity. If all lockage losses are returned to the Summit Pool by pumping from Eureka Pool, no net loss from the Silver Springs drainage area, except for some evaporation from the water surface in the canal and possible leakage around locks, will result from canal operations. The zone of outflow from the Summit Pool to the aquifer will be in a natural potentiometric trough, and the zone of inflow will be in a potentiometric ridge area. The equilibrium water level in the pool will tend to be about 1 foot higher than the altitude of the lowest level in the pre-canal potentiometric trough, and about 2 feet lower than the highest level on the pre-canal potentiometric ridge. West of the Silver Springs drainage area just east of Dunnellon Lock, in the area of a local potentiometric high, the water level in the Summit Pool is expected to be about 15 feet below the natural potentiometric surface. In most areas 2 to 3 miles away from the Summit Pool, effects of the canal on the natural potentiometric surface should be slight. The stage of the Summit Pool, judging from the 36-year record for ground-water level changes and the anticipated indirect effect of the controlled stage in Eureka Pool, should have a maximum of about 10.5 feet with a maximum water level of about 51.5 feet above mean sea level and a minimum of about 41.0 feet above mean sea level. Of particular importance in the Summit Pool is an implementation of well planned construction and operational procedures designed to minimize risks of ground-water contamination.

Florida

Data gap analysis for estimation of agricultural return flows in the Upper Gunnison River Basin, Colorado

The Gunnison River and many tributaries in the Upper Gunnison River Basin provide water to irrigate agricultural crops. The application of irrigation water can recharge some aquifers locally by water percolating below the root zone and eventually flowing back to the stream or river through the subsurface. Diverting surface water for irrigation reduces streamflow during the irrigation season but can provide temporary storage of water and supplement streamflow after the snowmelt runoff season. Understanding the timing and quantity of agricultural return flows could help resource managers make informed decisions and adapt to potential changes in water management and availability that could affect irrigation practices. In 2024, the U.S. Geological Survey, in cooperation with the Upper Gunnison River Water Conservancy District, began a study to characterize agricultural return flows in the Upper Gunnison River Basin by using endmember mixing analysis and developing a groundwater model. Both approaches require data from multiple sources, but data gaps exist in the East River study reach and other reaches of interest (Ohio Creek, Tomichi Creek, and Cochetopa Creek). The East River Basin, which is the initial focus of the study, has fewer data gaps than the other basins. Data gaps could be addressed by installing additional surface water and groundwater monitoring sites, making regular streamflow measurements on tributaries, and completing tests to characterize local aquifer properties.

Colorado

Bathymetric and velocimetric surveys at highway bridges crossing the Missouri River between Kansas City and St. Louis, Missouri, May 19–26, 2021

Bathymetric and velocimetric data were collected by the U.S. Geological Survey, in cooperation with the Missouri Department of Transportation, near nine bridges at eight highway crossings of the Missouri River between Kansas City and St. Louis, Missouri, from May 19 to 26, 2021. A multibeam echosounder mapping system was used to obtain channel-bed elevations for river reaches about 1,640 to 1,840 feet (ft) longitudinally and generally extending laterally across the active channel from bank to bank during low to moderate flood-flow conditions. These surveys provided channel geometry and hydraulic conditions at the time of the surveys and provided characteristics of scour holes that may be useful in developing or verifying predictive guidelines or equations for computing potential scour depth. These data also may be useful to the Missouri Department of Transportation as a low to moderate flood-flow assessment of the bridges for stability and integrity issues with respect to bridge scour during floods. Bathymetric data were collected around every in-channel pier. Scour holes were present at most piers for which bathymetry could be obtained, except those on banks or surrounded by riprap. Occasionally, scour holes were minor and difficult to discern from nearby dunes and ripples. All the bridge sites in this study were previously surveyed and documented in previous studies. Comparisons between bathymetric surfaces from the previous surveys and those of the current (2021) study do not indicate any consistent correlation between channel-bed elevations and streamflow conditions. The average difference between the bathymetric surfaces varied from 1.59 ft higher to 0.95 ft lower in 2021 than 2017, which corresponds to a gain of 100,200 cubic yards and a loss of 55,800 cubic yards, respectively. The average difference between the bathymetric surfaces varied from 2.74 ft higher to 3.05 ft lower in 2021 than 2013, which corresponds to a gain of 111,500 cubic yards and a loss of 169,200 cubic yards, respectively. The average difference between the bathymetric surfaces varied from 4.52 ft higher to 1.38 ft lower in 2021 than 2011, which corresponds to a gain of 221,100 cubic yards and a loss of 90,300 cubic yards, respectively. The most substantial overall net gain was 221,100 cubic yards between 2011 and 2021 at structures L0550 and A4497 at Jefferson City (site 20). The large net gain likely results from a combination of the mitigation of the scour holes near pier 4 of both bridges and the substantially lower flow in 2021 than in 2011. Alternatively, the most substantial overall net loss was 169,200 cubic yards between 2013 and 2021 at structure A6288 at Hermann (site 21), despite comparable streamflows. Pier size, nose shape, and skew to approach flow had a substantial effect on the size of the scour hole observed at a given pier. Larger and deeper scour holes were present at piers with wide or blunt noses caused by exposed footings or caissons. When a pier was skewed to primary approach flow, the scour hole was generally deeper and larger than at a similar pier without skew; furthermore, the shape of the scour hole near skewed piers in this study generally was longer and deeper on the side with impinging flow. At structure A6288 at Hermann (site 21), the scour hole near pier 5 was difficult to discern from nearby dunes and ripples, whereas the upstream edge of the footing was visible at pier 4, which likely contributes to the larger scour hole near that pier; the top of the footing may blunt the horseshoe vortex at pier 5, but the exposed front of the footing may exacerbate the vortex at pier 4.

Missouri

Cnidarian–algal partnerships structure bacterial communities during strobilation in Cassiopea xamachana

Cnidarian–algal (Symbiodiniaceae) symbioses rely on complex interactions among the cnidarian host, algal symbionts, and associated bacterial communities. In the upside-down jellyfish Cassiopea xamachana , the polyp-to-medusa transition (strobilation) requires the establishment of symbiosis with Symbiodiniaceae algal partners, yet bacterial community dynamics during this developmental process remain unknown. Here, we experimentally induced symbiosis in aposymbiotic polyps using four algal treatments: xenic Symbiodinium microadriaticum (native symbiont), xenic Breviolum minutum , antibiotic-treated B. minutum , and a photosynthetically impaired B. minutum mutant. We combined 16S rRNA gene sequencing with measurements of photosynthetic efficiency, asexual budding, and algal surface N-glycan profiles to characterize holobiont assembly during symbiosis onset and strobilation. Algal treatment structured bacterial communities in both algal cultures and polyp tissues. Our analyses identified a set of amplicon sequence variants that consistently distinguished strobilating polyps from non-strobilating aposymbiotic and mutant polyps, in addition to potential bacterial biomarkers associated with successful metamorphosis. Strobilation was associated with the enrichment of bacterial communities putatively involved in sulfur and nitrogen cycling, whereas non-strobilating aposymbiotic and mutant polyps were characterized by opportunistic bacteria and increased community variability. Together, these results reveal coordinated changes in algal physiology, surface glycan profiles, and bacterial community structure associated with successful strobilation in C. xamachana and support a model in which tripartite host–alga–bacteria interactions influence cnidarian life stage transitions.

ISME Communications

Temperature

The “National Field Manual for the Collection of Water-Quality Data” (NFM) provides guidelines and procedures for U.S. Geological Survey (USGS) personnel who collect data used to assess the quality of the Nation’s surface-water and groundwater resources. This chapter, NFM A6.1, provides guidance and protocols for the measurement of temperature of air, of a surface-water body or in groundwater, which include the scientific basis of the measurement, selection and maintenance of equipment, calibration verification, troubleshooting, and procedures for measurement and reporting. It updates and supersedes USGS Techniques of Water-Resources Investigations, book 9, chapter A6.1, version 2.0, by Franceska D. Wilde. Temperature of air and water is routinely measured when water samples are collected, is often measured continually at USGS streamgages, and is a parameter regularly measured during laboratory and field experiments. The field method for measuring temperature described in this chapter is applicable to air and most natural waters. Before 2017, the NFM chapters were released in the USGS Techniques of Water-Resources Investigations series. Effective in 2018, new and revised NFM chapters are being released in the USGS Techniques and Methods series; this series change does not affect the content and format of the NFM. More information is in the general introduction to the NFM (USGS Techniques and Methods, book 9, chapter A0) at https://doi.org/10.3133/tm9A0 . The authoritative current versions of NFM chapters are available in the USGS Publications Warehouse at https://pubs.usgs.gov/ . Comments, questions, and suggestions related to the NFM can be addressed to nfm@usgs.gov .

Techniques and Methods

Three-dimensional geologic framework model of the Rio San Jose groundwater basin and adjacent areas, New Mexico

As part of a U.S. Geological Survey study in cooperation with the Bureau of Reclamation and the Pueblo of Acoma, New Mexico, and the Pueblo of Laguna, New Mexico, a digital three-dimensional geologic framework model was constructed for the Rio San Jose and its surface-water drainage basin in west-central New Mexico. This three-dimensional model defines the altitude, thickness, and extent of 18 geologic units for use in a regional numerical hydrologic model. The model included an undifferentiated Proterozoic basement layer, 13 consolidated Paleozoic and Mesozoic rock units, and 4 Cenozoic units. Model input data were compiled from published cross sections, well data, structure contour maps, selected geophysical data, and data derived from geologic maps and structural features in the study area. These data were used to construct faulted surfaces that represent the upper and lower subsurface geologic unit boundaries. The digital three-dimensional geologic framework model combines faults, the altitude of the tops of each geologic unit, and boundary lines depicting the subsurface extent of each geologic unit. The digital three-dimensional geologic model described in this report and the corresponding data release represents the generalized geometry of the subsurface geologic units; it reproduces with reasonable accuracy the input geologic data and is consistent with previously published subsurface conceptualizations of the region. The geologic framework model is at a scale and resolution appropriate for use as the foundation for a numerical hydrologic model of the study area.

New Mexico

Alternative approaches to dryland reclamation enhance vegetation cover and soil stability at a former uranium mine

Introduction Conventional reclamation methods to recover dryland ecosystems after mineral extraction often have low success. Alternative reclamation techniques may help overcome the many challenges to establishing persistent native vegetation and stable soils. Objectives Compare conventional reclamation approaches that focus primarily on soil stabilization to alternative approaches that may improve native ecosystem restoration at the Kanab North Mine in northern Arizona. Methods In a fully crossed experiment, conventional seed mix (native and non-native species) and seeding methods (drill-seeding) were compared to alternative practices, including a native-only seed mix, connectivity modifiers (ConMods) with hand seeding, and a biocrust inoculation. Restoration metrics like plant establishment, species composition, soil surface cover and stability, biocrust establishment, and near-surface wind-driven sediment were monitored over the first 5 years post-reclamation. Results While all restoration metrics improved with time, compared to traditional methods, ConMods increased total, graminoid, and native plant species cover, and the native-only seed mix increased woody, native, and perennial species cover. Biocrust inoculation increased late-successional biocrust development, but biocrusts only persisted over 5 years in combination with ConMods. Soil stability increased in all treatments, but both ConMods and biocrust inoculation increased stability compared to traditional practices. Conclusion Overall, alternative approaches to reclamation tested here (ConMods, native seed, and biocrust inoculation) were more effective than traditional practices at increasing total plant cover, facilitating biocrust establishment, and promoting soil stability after uranium mine reclamation.

Arizona

Where will the cat cross the road? Comparing camera and GPS-based models for identifying wildlife corridors

Designing effective wildlife corridors is a critical conservation challenge in fragmented landscapes. GPS-based step selection functions strongly predict dispersal corridors and connectivity, but GPS collaring can be expensive and invasive. Camera-based occupancy models are widely used for connectivity analyses but may involve trade-offs in data resolution. Despite widespread use of both approaches, few studies have directly compared them using concurrent datasets. We developed a stacked single-species, single-season occupancy model and a Circuitscape connectivity surface for mountain lions (Puma concolor) on Washington’s Olympic Peninsula, USA, and compared them with a connectivity surface from an existing integrated step selection function. Both models predicted mountain lion GPS locations well, with binned Spearman rank correlations of 1 for Circuitscape and 0.96 for the step selection function, though step selection better identified habitat use by dispersers. Connectivity predictions were moderately correlated across the landscape ( r = 0.26), but agreement was strongest in human-dominated areas most critical for corridor planning. We conclude that GPS-based approaches are advantageous when data collection is feasible and the focus is on dispersal or fine-scale movement. However, camera-based approaches may be preferable for multi-species monitoring, large spatial and temporal scales, noninvasive sampling, when resources are limited, or when fine-scale or dispersal-specific inference is not required.

Washington

Satellite imagery of the north-central Gulf of Mexico, June 1993-May 1997

This CD contains imagery collected by the Advanced Very High Resolution Radiometer (AVHRR) on the NOAA polar-orbiting weather satellites. The AVHRR provides almost daily coverage of a site at a resolution of approximately 1 km. The data types included are sea surface temperature (SST), water reflectance (REF), and a false-color infrared overview (FCI).

Alabama, Florida, Louisiana, Mississippi

A regional model comparison between MODPATH and MT3D of groundwater travel time distributions

Groundwater quality changes in wells and streams lag behind changes to land use due to groundwater travel times. Two contaminant transport methods were compared to assess differences in their simulated travel time distributions (TTDs) to streams and wells in the Wisconsin Central Sands. MODPATH simulates advective groundwater flow with particle tracking, while MT3D simulates age-mass using a finite difference solution without dispersion to allow for direct comparison of the two methods. MODPATH appropriately simulates groundwater TTDs from the water table to surface discharge but is subject to inaccuracies at weak-sink well cells due to the flow-model grid discretization and imprecise location of well discharge within well cells. MT3D better represents weak-sink well cells since it removes mass in proportion to the prescribed pumping rate, although travel time within well cells is neglected. Conversely, MT3D's treatment of surface water boundary cells is not as accurate as MODPATH because mass should be removed from the water table rather than the full cell volume. MT3D simulations of TTDs can also be confounded by the instantaneous vertical distribution of mass introduced throughout recharge cells instead of at the water table, which initiates mass along deeper flow paths. We evaluated 9 MODPATH and 13 MT3D implementations, generating differences in median travel times of up to 18 years. Both methods have strengths and weaknesses, with MT3D better representing weak-sink well cell behavior and MODPATH better representing surficial recharge and discharge. The effect of these characteristics on simulated TTDs, along with ideas for ameliorating method weaknesses, is discussed.

Wisconsin