USGS Science⌕ Search

SEARCH · USGS Science

Results for “Fisheries Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 379 records · Page 21Linked to original sources
USGS2020

Walleye growth declines following zebra mussel and Bythotrephes invasion

Invasive species represent a threat to aquatic ecosystems globally; however, impacts can be heterogenous across systems. Documented impacts of invasive zebra mussels ( Dreissena polymorpha ) and spiny water fleas ( Bythotrephes cederströmii ; hereafter Bythotrephes ) on native fishes are variable and context dependent across locations and time periods. Here, we use a hierarchical Bayesian analysis of a 35-year dataset on two fish species from 9 lakes to demonstrate that early life growth of ecologically important fishes are influenced by these aquatic invasive species. Walleye ( Sander vitreus ) in their first year of life grew more slowly in the presence of either invader after correcting for temperature (measured by degree days), and were on average 12 or 14% smaller at the end of their first summer following invasion by Bythotrephes or zebra mussels, respectively. Yellow perch ( Perca flavescens ) growth was less affected by invasion. Yellow perch on average grew more slowly in their first year of life following invasion by zebra mussels, although this effect was not statistically distinguishable from zero. Early life growth of both walleye and yellow perch was less tightly coupled to degree days in invaded systems, as demonstrated by increased variance surrounding the degree day-length relationship. Smaller first-year size is related to walleye survival and recruitment to later life stages and has important implications for lake food webs and fisheries management. Future research quantifying effects of zebra mussels and Bythotrephes on other population-level processes and across a wider gradient of lake types is needed to understand the mechanisms driving observed changes in walleye growth.

Minnesota↗
USGS2021

A global perspective on the influence of the COVID-19 pandemic on freshwater fish biodiversity

The COVID-19 global pandemic and resulting effects on the economy and society (e.g., sheltering-in-place, alterations in transportation, changes in consumer behaviour, loss of employment) have yielded some benefits and risks to biodiversity. Here, we considered the ways the COVID-19 pandemic has influenced (or may influence) freshwater fish biodiversity (e.g., richness, abundance). In many cases, we could only consider potential impacts using documented examples (often from the media) of likely changes, because anecdotal observations are still emerging and data-driven studies are yet to be completed or even undertaken. We evaluated the potential for the pandemic to either mitigate or amplify widely acknowledged, pre-existing threats to freshwater fish biodiversity (i.e., invasive species, pollution, fragmentation, flow alteration, habitat loss and alteration, climate change, exploitation). Indeed, we identified examples spanning the extremes of positive and negative outcomes for almost all known threats. We also considered the pandemic's impact on freshwater fisheries demand, assessment, research, compliance monitoring, and management interventions (e.g., restoration), with disruptions being experienced in all domains. Importantly, we provide a forward-looking synthesis that considers the potential mechanisms and pathways by which the consequences of the pandemic may positively and negatively impact freshwater fishes over the longer term. We conclude with a candid assessment of the current management and policy responses and the extent to which they ensure freshwater fish populations and biodiversity are conserved for human and aquatic ecosystem benefits in perpetuity.

Biological Conservation↗
USGS2020

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Yellow perch, Perca flavescens , is an ecologically and economically important species native to a large portion of the northern United States and southern Canada and is also a promising candidate species for aquaculture. However, no yellow perch reference genome has been available to facilitate improvements in both fisheries and aquaculture management practices. By combining Oxford Nanopore Technologies long-reads, 10X Genomics Illumina short linked reads and a chromosome contact map produced with Hi-C, we generated a high-continuity chromosome-scale yellow perch genome assembly of 877.4 Mb. It contains, in agreement with the known diploid chromosome yellow perch count, 24 chromosome-size scaffolds covering 98.8% of the complete assembly (N50 = 37.4 Mb, L50 = 11). We also provide a first characterization of the yellow perch sex determination locus that contains a male-specific duplicate of the anti-Mullerian hormone type II receptor gene ( amhr2by ) inserted at the proximal end of the Y chromosome (chromosome 9). Using this sex-specific information, we developed a simple PCR genotyping assay which accurately differentiates XY genetic males ( amhr2by + ) from XX genetic females ( amhr2by − ). Our high-quality genome assembly is an important genomic resource for future studies on yellow perch ecology, toxicology, fisheries and aquaculture research. In addition, characterization of the amhr2by gene as a candidate sex-determining gene in yellow perch provides a new example of the recurrent implication of the transforming growth factor beta pathway in fish sex determination, and highlights gene duplication as an important genomic mechanism for the emergence of new master sex determination genes.

Molecular Ecology Resources↗
USGS1981

Submarine topography and physiography of lower Cook Inlet, Alaska

The submarine topography of lower Cook Inlet, Alaska, is complex because the bathymetric aspects and water depths change rapidly over short distances. The folded upper Tertiary subbottom was eroded during the first of five major Quaternary glacial advances over the inlet, and later fluvial, fluvioglacial, glacial, and marine erosional and depositional processes shaped the bottom to its present configuration. Most of lower Cook Inlet has a relative smooth topography showing small local highs and lows, and slopes with gradients generally ranging from less than a degree to locally about 5°. Around the southwestern Kenai Peninsula and the Barren and Kodiak Islands, strong faulting with vertical movement has added to the complexity of bottom topography. Less complex, nonfaulted areas occur near Kalgin Island and south Kachemak Bay and around Augustine Island. To facilitate description of lower Cook Inlet the estuarine body is divided into three large regions, northern and central, southern, and eastern; and these regions are divided into smaller physiographic areas on the basis of submarine topographic characteristics and 20-m depth zonations. Each area is named by combining the geographic name of a nearby place or feature on land with a common term for a marine physiographic feature -- trough, platform, ramp, slope, plateau. Local highs and deeps having lees than 5-m relief, which can be important to fisheries and specific research or economic studies, are not named, mentioned in text, or shown on the figures.

Alaska↗
USGS2015

Precision of hard structures used to estimate age of mountain Whitefish ( Prosopium williamsoni )

The mountain whitefish ( Prosopium williamsoni ) is a widely distributed salmonid in western North America that has decreased in abundance over portions of its distribution due to anthropogenic disturbances. In this investigation, we examined precision of age estimates derived from scales, pectoral fin rays, and sagittal otoliths from 167 mountain whitefish. Otoliths and pectoral fin rays were mounted in epoxy and cross-sectioned before examination. Scales were pressed onto acetate slides and resulting impressions were examined. Between-reader precision (i.e., between 2 readers), between-reader variability, and reader confidence ratings were compared among hard structures. Coefficient of variation (CV) in age estimates was lowest and percentage of exact agreement (PA-0) was highest for scales (CV = 5.9; PA-0 = 70%) compared to pectoral fin rays (CV =11.0; PA-0 = 58%) and otoliths (CV = 12.3; PA-0 = 55%). Median confidence ratings were significantly different ( P ≤ 0.05) among all structures, with scales having the highest median confidence. Reader confidence decreased with fish age for scales and pectoral fin rays, but reader confidence increased with fish age for otoliths. In general, age estimates were more precise and reader confidence was higher for scales compared to pectoral fin rays and otoliths. This research will help fisheries biologists in selecting the most appropriate hard structure to use for future age and growth studies on mountain whitefish. In turn, selection of the most precise hard structure will lead to better estimates of dynamic rate functions.

Western North American Naturalist↗
USGS1975

The determination, assessment, and design of "in-stream value" studies for the northern Great Plains region

An extensive literature review was conducted to determine the discharge requirements of various components of a warm water fishery. Where exact hydrologic parameters were not measured directly in individual studies, they were estimated from inferred statements and knowledge of hydrologic variables leading to certain instream conditions. From this information it was possible to determine which components of the stream community would be most seriously affected by reduced discharges. In addition, a number of different methods used in the recommendation of minimum streamflows was reviewed. These methods were evaluated for their reliability and ease of use. It was concluded that a method for recommending minimum discharges should not sacrifice reliability for expediency. A methodology is proposed for the recommendation of minimum discharges for a warm water fishery. This method utilizes field measurements of critical stream areas and biological criteria determined from the used of indicator species. For large rivers, migration and spawning requirements are analyzed using the paddlefish ( Polyodon spathula ) as the indicator species. For smaller rivers, the suggested indicator species is the sauger ( Stizostedion canadense ). Rearing flows are determined on the basis of stream productivity by analyzing macroinvertebrate habits, and on the basis of fish habitat typing. The indicator species for determining adequate fish habitat is the stonecat ( Notorus flavus ). A number of variables were identified which might require a greater amount of in-stream flow than the fishery, per se. These variables included streamflow needs for riparian and other sub-irrigated vegetation, water quality parameters, anchor ice formation, and the relationship between discharge and sediment yield. Information concerning these variables is insufficient at this time to determine whether a variable will "over-ride" the streamflow requirement for the fishery itself. Further research is needed in these areas, and several investigative methods for conducting such research are proposed.

Great Plains↗
USGS2013

Current status, issues and applications of GIS to inland fisheries

This chapter is concerned with GIS applications made to inland fisheries. These include fisheries in freshwater rivers, lakes and reservoirs. Although these GIS applications have increased rapidly since the late 1980s, this area of fish production receives less attention than either aquaculture or marine fisheries. This is probably because inland fisheries are often practised in remote areas, at a semi-subsistence level, or are recreational in many developed countries, and data on most aspects of the fisheries are scattered, fragmented and frequently unsuited for use as inputs to GIS. The GIS-based inland fisheries work has concentrated on mapping the distribution and abundance of fish species and mapping and modelling habitats in rivers, reservoirs and lakes, and relating the two. Much of the material included in the chapter on inland fisheries comes from either Fisher and Rahel (2004) or from the series of symposium proceedings published by the Fishery-Aquatic GIS Research Group (Nishida and Caton, 2010).

Book chapter↗
USGS1989

Acid rain publications by the U.S. Fish and Wildlife Service, 1979-1989

Pollution of aquatic and terrestrial ecosystems has been a concern to society since the burning of fossil fuels began in the industrial revolution. In the past decade or so, this concern has been heightened by evidence that chemical transformation in the atmosphere of combustion by-products and subsequent long-range transport can cause environmental damage in remote areas. The extent of this damage and the rates of ecological recovery were largely unknown. "Acid rain" became the environmental issue of the 1980's. To address the increasing concerns of the public, in 1980 the Federal government initiated a 10-year interagency research program to develop information that could be used by the President and the Congress in making decisions for emission controls. The U.S. Fish and Wildlife Service has been an active participant in acid precipitation research. The Service provided support to a number of scientific conferences and forums, including the Action Seminar on Acid Precipitation held in Toronto, Canada, in 1979, an international symposium on Acidic Precipitation and Fishery Impacts in Northeastern North America in 1981, and a symposium on Acidic Precipitation and Atmospheric Deposition: A Western Perspective in 1982. These meetings as well as the growing involvement with the government's National Acidic Precipitation Assessment Program placed the Service in the lead in research on the biological effects of acidic deposition. Research projects have encompassed water chemistry, aquatic invertebrates, amphibians, fish, and waterfowl. Water quality surveys have been conducted to help determine the extent of acid precipitation effects in the northeast, Middle Atlantic, and Rocky Mountain regions. In addition to lake and stream studies, research in wetland and some terrestrial habitats has also been conducted. Specific projects have addressed important sport species such as brook trout (Salvelinus fontinalis), Atlantic salmon (Salmo salar), and striped bass (Morone saxatilis). Trace metal accumulation in fish has been investigated and a symposium sponsored on related work. U.S> Fish and Wildlife Service scientists serve as advisors and participants in research being conducted by industry, nonprofit groups, State and other Federal agencies. Researcher have worked closely with colleagues in Canada, England, Norway, Scotland, the Soviet Union, and Sweden to gain additional understanding of the problem. In 1982, the Service implemented a mitigation research program to provide resource managers with information to help them protect sensitive ecosystems, and rehabilitation methods for resources already affected by acidification. An international workshop was convened to outline the research needs. Several conferences were organized to develop appropriate field and laboratory procedures. Scientists with the mitigation research program are evaluating the ecological effects of liming (addition of base material) surface waters and surrounding watershed to provide buffering against acidic inputs. Through long-term cooperative project with States and other organizations, investigations are studying possible abatement methods for regions most affected by acidic deposition. To date, more than 200 reports the describe these studies have been published. These products include conference proceedings, journal articles, and in-house scientific publications. An education poster describing the effects of acid rain on aquatic ecosystems was developed and distributed to individuals, conservations and State organizations, and the public education system. This annotated bibliography lists current publications by Service authors, cooperators, or contractors on acid rain and related quality. Entire are arranged alphabetically by author surname. For further information about the research program, contact the U.S. Fish and Wildlife Service, Acid Precipitation Section, National Fishery Research Center -- Leetown, Box 700, Kearneysville, WV 25430.

Biological Report↗
USGS1986

Strategies for reducing risks from introductions of aquatic organisms: The federal perspective

The Lacey Act of 1900 and subsequent amendments have provided the basis for existing federal regulations on species introductions. The 1981 version repealed the Black Bass Act and corrected certain insufficiencies in the original Lacey and Black Bass Acts. A 1977 executive order instructs federal agencies, to the extent permitted by law, to restrict the introductions of exotic species into federally owned or controlled lands and waters. The National Environmental Policy Act of 1969 and the Endangered Species Act of 1973 indirectly relate to the stocking of exotic fish. The first requires each federal agency to prepare an environmental impact statement if a proposed action, such as a species introduction, may significantly affect the environment. The second regulation prohibits the importation of endangered or threatened animals, and specific exotic fishes could be in one of these categories. The U.S. Fish and Wildlife Service, as part of the Department of Interior's charge, initiated a program in 1977 at Gainesville, Florida, to conduct and coordinate research on non-native fish introduced or considered for stocking into United States waters. Construction of a fishery laboratory and other research facilities began in 1984 and are scheduled for completion in 1987.

Fisheries↗
USGS1970

About nutria and their control

Wild animals are generally classed as beneficial or pest species, depending on the variable interests of man. Those that provide him with earnings, recreation, or enjoyment are considered beneficial; those that compete with him for food, or ruin his possessions or environment, are quickly dubbed pests. But all men do not have the same interests or the same environment, so many animals attain both a beneficial and a pest status. The wild nutria in the United States is one of these animals with a dual nature. It is most numerous in the Gulf States, particularly in Louisiana and Texas, where the sale of nutria fur and meat in some years is a several-million-dollar industry. Although it is a valuable resource, it sometimes causes so much agricultural damage that it is also classified as a pest. In the late 1950's, nutria damage to sugarcane and rice became so acute that the people of Louisiana and Texas asked the Federal Government for help. Research on the problem was assigned to the Division of Wildlife Research, Bureau of Sport Fisheries and Wildlife, which is responsible, among other things, for developing methods to control damage by wild animals. The Division's Denver Wildlife Research Center established field stations at Houma, Louisiana, and Beaumont, Texas, and in 1963 work was begun under congressional appropriation to fulfill this public request. The goal of the Houma and Beaumont stations was to develop a sound, scientific solution to the problem of controlling nutria damage. IT WAS NOT A PROGRAM OF ERADICATION. Because of the involvement of the fur and meat industry, the beneficial aspects of nutria had to be continuously recognized when potential methods of control were evaluated. Especially sought were workable control procedures that could be readily used by laymen. These would have to be relatively selective for nutria and safe for humans, domestic animals, and other wildlife. In 1967, four years after our studies were begun, we had found methods to solve the current and immediately foreseeable problems of nutria damage. This report presents much of the information we gathered during this four-year period about nutria and how to control them. Because it is meant primarily for the general public, it omits the specific references to the scientific literature that pepper most technical reports, but it does present background information on the history, biology, and behavior of nutria, particularly those in the Gulf Coast Region. The control methods presented, when used as directed, are safe and effective and provide solutions for most situations, including those where people want to alleviate nutria damage without killing the nutria. Though we were pleased with these results, research still continues, directed toward discovering new and better methods of control that will solve any future problem with nutria.

Resource Publication↗
USGS2000

The Cooperative Wildlife Research Unit and wildlife education: Historic development, future challenges

In 1932, J. N. 'Ding' Darling proposed a 3-year tripartite arrangement between the Iowa Fish and Game Commission, Iowa State University, and himself to establish the first Cooperative Wildlife Research Unit. Three years later, the Cooperative Wildlife Research Unit Program was broadened to include 9 land-grant colleges representing recognized ecoregions in the United States. In 1960, the Units were given statutory recognition by Public Law 86-686 that also included provision for establishing Cooperative Fishery Units. The Cooperative Research Unit idea has evolved to 39 Units in 2000. Today, the main cooperators of the Unit program are the land-grant university, the state fish and game or conservation agency, the U.S. Geological Survey, and the Wildlife Management Institute. The Cooperative Units mission, as stated in Public Law 86-686, remains: 'To facilitate cooperation between the Federal Government, colleges and universities, and private organizations for cooperative unit programs of research and education relating to fish and wildlife and for other purposes.' Graduate research and education continue to be the program's primary missions. In any given year >600 graduate and post-graduate students are involved. Post-graduate employment of Unit-afffiliated students is >90%. Perhaps the primary benefit to the education process is the Units' formal connection to the state cooperator and to their federal agency that might not otherwise be available to university faculty and students. Units are conduits to state and federal funding for research projects conducted by university faculty and students. The CRU program is well positioned to educate a multitalented, ethnically diverse cadre of graduate students who will be prepared not only for their first professional job but also for their career by having been instilled with a desire for life-long professional accomplishment.

Wildlife Society Bulletin↗
USGS2025

U.S. Geological Survey Cooperative Research Units Program—A hawk’s view of 2024

Introduction The U.S. Geological Survey Cooperative Fish and Wildlife Research Units (USGS CRU) program was established in 1935 and codified by Congress in 1960 to enhance graduate education in wildlife and fisheries sciences and to facilitate research and technical assistance among natural resource agencies and universities on fisheries and wildlife management topics of mutual concern. The success of the CRU program lies in its cooperative approach. State and Federal fish and wildlife agencies determine where focused, science-based studies for wildlife and natural resource management for societal benefit are needed. The CRU scientists conduct applied research to contribute results to inform and aid partners in determining best practices for managing resources. Each Unit is a unique partnership among the U.S. Geological Survey, a host university, one or more State agencies, the Wildlife Management Institute, and the U.S. Fish and Wildlife Service.

Fact Sheet↗
USGS2009

Determining the efficacy of microsatellite DNA-based mixed-stock analysis of Lake Michigan’s lake whitefish commercial fishery

Management of commercially exploited fish should be conducted at the stock level. If a mixed stock fishery exists, a comprehensive mixed stock analysis is required for stock-based management. The lake whitefish Coregonus clupeaformis comprises the primary commercial fishery across the Great Lakes. Recent research resolved that six genetic stocks of lake whitefish were present in Lake Michigan, and long-term tagging data indicate that Lake Michigan's lake whitefish commercial fishery is a mixed stock fishery. The objective of this research was to determine the usefulness of microsatellite data for conducting comprehensive mixed stock analyses of the Lake Michigan lake whitefish commercial fishery. We used the individual assignment method as implemented in the program ONCOR to determine the accuracy level at which microsatellite data can reliably identify component populations or stocks. Self-assignment of lake whitefish to their population and stock of origin ranged from > 96% to 100%. Evaluation of genetic stock discreteness indicated a moderately high degree of correct assignment (average = 75%); simulations indicated supplementing baseline data by ∼ 50 to 100 individuals could increase accuracy by up to 4.5%. Simulated mixed stock commercial harvests with known stock composition showed a high degree of correct proportional assignment between observed and predicted harvest values. These data suggest that a comprehensive mixed stock analysis of Lake Michigan's lake whitefish commercial fishery is viable and would provide valuable information for improving management.

Michigan, Wisconsin↗
USGS1988

Persistent toxic substances and the health of fish communities in the Great Lakes

The role, if any, of toxic substances in bringing about changes in the productivity and status of fishery resources, is not well understood. At the 'Workshops on Persistent Toxic Substances and the Health of the Aquatic Community,' the Fish Biota Discussion Subgroup considered the issue of toxic substances by responding to the three questions addressed to it by the Workshop Organizing Committee as described earlier in the introduction to these proceedings. In responding to these questions, the Subgroup members took into account the earlier, formal presentations made during the Symposium, the published literature applicable to the subject area, and personal knowledge gained from research on Great Lakes fisheries or containments. The major discussions, conclusions, and recommendations of the Subgroup summarized here were developed during these deliberations and are presented under the major headings of the questions asked of the Subgroup.

Book chapter↗
USGS2025

Sustaining Namāēw (Lake Sturgeon): Partner-led climate adaptation for Indigenous fisheries in the Laurentian Great Lakes

Namāēw (Menominee; Lake Sturgeon Acipenser fulvescens ) have long supported Indigenous culture and food sovereignty but have declined by over 80% in the Laurentian Great Lakes, exacerbating their sensitivity to climate change. Following interest from Indigenous leaders, we initiated a partnership-driven effort to (1) assess climate effects and (2) develop potential adaptation options for Namāēw using a participatory, transdisciplinary approach that combines multiple ways of knowing. Through a literature review and nine semistructured conversations with officials from Indigenous Nations and organizations in the Great Lakes, we identified central themes including access, culture, and fish persistence. Other concerns included habitat, food web shifts, and water quality. Prominent adaptation themes involved population assessments, stocking, regulations, habitat restoration, interagency coordination, and cultural advocacy. These findings underscore the importance of partnership-driven research to support Indigenous fisheries through knowledge coproduction and equitable adaptation. Our approach provides a model to inform stewardship planning for fisheries that are facing global change.

Laurentian Great Lakes↗
USGS2009

Maintaining the competitiveness of the American Fisheries Society journals: An assessment based on influence and cost-effectiveness

Recent changes in the landscape of scientific publishing prompted the Publications Overview Committee of the American Fisheries Society (AFS) to review the Society's portfolio of scientific journals. We evaluated journals based on metrics in two categories: (1) citation-based measures of the influence of a journal on the scientific literature, and (2) measures of the cost-effectiveness of a journal (citation rate adjusted for subscription cost). Over the long-term, we found that ecology journals had far stronger citation-based influence than fisheries and aquatic sciences journals, and that journals publishing primarily basic research had stronger influence than journals publishing applied research (including four AFS journals and Fisheries magazine). In evaluating the current status of fisheries and aquatic sciences journals, we found that metrics of influence and cost-effectiveness provided considerably different portrayals of journals relative to their peers. In terms of citation-based influence, we found that the AFS journal Transactions of the American Fisheries Society (TAFS) and Fisheries magazine were competitive with highly regarded peer fisheries journals, but that North American Journal of Aquaculture (NAJA) and Journal of Aquatic Animal Health (JAAH) were less influential than their peers. The citation-based influence of North American Journal of Fisheries Management (NAJFM) was intermediate between TAFS/Fisheries and NAJA/JAAH . For journals like NAJFM and NAJA , we expect that much of the scientific influence on policy and management is not captured by citations in the primary literature, and alternative methods of evaluation may be needed. All of the AFS journals ranked highly with regard to cost-effectiveness because their subscription costs are low, and these rankings are in accordance with membership needs and the strategic mission of AFS to provide broad and timely dissemination of scientific information. We conclude by suggesting ways to increase the influence of AFS journals without compromising their accessibility and affordability, and offer advice about methods and frequency for future journal evaluations.

Fisheries↗