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Geological, hydrological, and biological issues related to the proposed development of a park at the confluence of the Los Angeles River and the Arroyo Seco, Los Angeles County, California

A new park is being considered for the confluence of the Los Angeles River and the Arroyo Seco in Los Angeles County, California. Components of the park development may include creation of a temporary lake on the Los Angeles River, removal of channel lining along part of the Arroyo Seco, restoration of native plants, creation of walking paths, and building of facilities such as a boat ramp and a visitor center. This report, prepared in cooperation with the Mountains Recreation and Conservancy Authority, delineates the geological, hydrological, and biological issues that may have an impact on the park development or result from development at the confluence, and identifies a set a tasks to help address these science issues. Geologic issues of concern relate to surface faulting, earthquake ground motions, liquefaction, landsliding, and induced seismicity. Hydrologic issues of concern relate to the hydraulics and water quality of both surface water and ground water. Biological issues of concern include colonization-extinction dynamics, wildlife corridors, wildlife reintroduction, non-native species, ecotoxicology, and restoration of local habitat and ecology. Potential tasks include (1) basic data collection and follow-up monitoring, and (2) statistical and probabilistic analyses and simulation modeling of the seismic, hydraulic, and ecological processes that may have the greatest impact on the park. The science issues and associated tasks delineated for the proposed confluence park will also have transfer value for river restoration in other urban settings.

Scientific Investigations Report

Quality of surface water at selected sites in the Suwannee River basin, Florida, April 1978 to December 1979

This report presents the results of analyses of water-quality samples collected from 13 surface-water sites in the Suwannee River basin in Florida from April 1978 to December 1979. The U.S. Geological Survey, in a cooperative investigative program with the Suwannee River Authority, has sampled a network of nine water-quality monitoring stations since 1968 to detect short- and long-term changes in surface-water quality in the Suwannee River. Two additional stations, Camp Branch near Genoa and Rocky Creek near Houston, were established in October 1978. In addition to this 11-station network, Deep Creek and Robinson Creek near Suwannee Valley, which originate in the Osceola National Forest and have been supported since April 1976 through a cooperative agreement with the U.S. Bureau of Land Management, have been included in this report. The analyses of samples collected routinely included: nutrients, total organic carbon, and 5-day biological oxygen demand, bimonthly; trace metals, annually. The array of constituents sampled was expanded in October 1978 at three of the original nine stations to provide quality-of-water information for streams draining an industrial area: Rocky Creek near Belmont, Hunter Creek near Belmont, and Swift Creek at Facil. Data collected at these three sites now include: major chemical constituents, six times per year; radium-226, two times per year; and trace metals, one time per year. These constituents are determined in addition to nutrients, total organic carbon, and biological oxygen demand which continue to be collected six times per year. All results of analyses of the water-quality samples collected from April 1978 to December 1979 remained within, or near, previously measured ranges and water-quality fluctuations were similar to those noted from data collected since 1970.

Florida

Water-quality, bed-sediment, and biological data (October 2003 through September 2004) and statistical summaries of data for streams in the Upper Clark Fork basin, Montana

Water, bed sediment, and biota were sampled in streams from Butte to below Missoula as part of a program, conducted in cooperation with the U.S. Environmental Protection Agency, to characterize aquatic resources in the upper Clark Fork basin of western Montana. Sampling sites were located on the Clark Fork, five major tributaries, and three smaller tributaries. Water-quality samples were collected periodically at 17 sites during October 2003 through September 2004 (water year 2004). Bed-sediment and biological samples were collected one time in August 2004. The primary constituents analyzed were trace elements associated with tailings from historical mining and smelting activities. This report summarizes the results of water-quality, bed-sediment, and biota samples collected in water year 2004 and provides statistical summaries of data collected since 1985. Water-quality data for samples collected periodically from streams include concentrations of selected major ions, trace elements, and suspended sediment. Daily values of suspended-sediment concentration and suspended-sediment discharge were determined for three sites. Bed-sediment data include trace-element concentrations in the fine-grained and bulk fractions. Biological data include trace-element concentrations in whole-body tissue of aquatic benthic insects. Quality-assurance data are reported for analytical results of water, bed sediment, and biota. Statistical summaries of water-quality, bed-sediment, and biological data are provided for the period of record since 1985 for each site.

Montana

Lakes of Oregon, Volume 2: Benton, Lincoln, and Polk Counties

An inventory of lakes and reservoirs of Oregon is essential for a complete evaluation of the total surface-water supply of the State and to provide a basis for answering questions about Oregon's lakes. Much of the information on lakes and reservoirs previously collected by Federal and State agencies has never been published. These data were compiled and used as a basis for collecting additional information. This report provides information for use by city, county, and State planning groups as well as for sportsmen, tourists, and others interested in preserving the recreational value of Oregon's lakes. Because of the large number of lakes and reservoirs in Oregon, a single report covering the State would be bulky. Therefore, the lake information is being published in several volumes on a county or multicounty basis. Volume .1, published in 1973, covered Clatsop, Columbia, and Tillamook Counties. Benton, Lincoln, and Polk Counties were selected for this report. (See fig. 1.) In addition to office compilation of existing data, most lakes were also visited. Visits were made in late summer or early fall when lakes were most accessible and when water temperature and biological activity are at a maximum. Some lakes previously studied by other Federal or State agencies and included in this report were not visited during the study.

Oregon

Hydrogeochemical studies of historical mining areas in the Humboldt River basin and adjacent areas, northern Nevada

The study area comprises the Humboldt River Basin and adjacent areas, with emphasis on mining areas relatively close to the Humboldt River. The basin comprises about 16,840 mi2 or 10,800,000 acres. The mineral resources of the Humboldt Basin have been investigated by many scientists over the past 100 years, but only recently has our knowledge of regional geology and mine geology been applied to the understanding and evaluation of mining effects on water and environmental quality. The investigations reported here apply some of the techniques and perspectives developed in the Abandoned Mine Lands Initiative (AMLI) of the U.S. Geological Survey (USGS), a program of integrated geological-hydrological-biological-chemical studies underway in the Upper Animas River watershed in Colorado and the Boulder River watershed in, Montana. The goal of my studies of sites and districts is to determine the character of mining-related contamination that is actively or potentially a threat to water quality and to estimate the potential for natural attenuation of that contamination. These geology-based studies and recommendations differ in matters of emphasis and data collection from the biology-based assessments that are the cornerstone of environmental regulations.

Scientific Investigations Report

A bibliography of references to avian cholera

Mrs. Wilson has made a genuine effort to include in this bibliography every significant reference to avian cholera since Louis Pasteur's articles appeared in 1880, although she recognizes the likelihood that a few have been overlooked. New listings have been added throughout 1978, but comprehensive coverage of the literature cannot be claimed beyond June of that year. Textbook accounts, because they are generally summaries of work published elsewhere, are excluded. Papers dealing primarily with the biology of Pasteurella multocida , as opposed to the disease it induces in birds, are also excluded, unless they report information of diagnostic usefulness. Short abstracts are not included unless the journals in which they are published are more widely available than those in which the complete articles appear or they are English summaries of foreign language articles. In compiling this bibliography, Mrs. Wilson has made extensive use of Biological Abstracts, the Pesticide Documentation Bulletin, and printouts generated by Bibliographic Retrieval Services, Inc. The "Literature Cited" sections of textbooks and journal articles pertinent to the subject were sources of many additional references. Regardless of the origin of the citation, its accuracy was confirmed by comparison with the original publication, except in those few instances (marked with an asterisk) when the journal was not on the shelves of the libraries accessible to us. The author will be grateful to users of the bibliography who point out errors or omissions. Wayne I. Jensen Microbiologist In Charge

Special Scientific Report - Wildlife

Lakes of Oregon, Volume 4: Clackamas County

An inventory of lakes and reservoirs of Oregon is essential for a complete evaluation of the total surface-water supply of the State and to provide a basis for answering questions about Oregon's lakes. Much of the information on lakes and reservoirs previously collected by Federal and State agencies has never been published. Those data were compiled and used as a basis for collecting additional information. This report provides information for use by city, county, and State planning groups as well as for sportsmen, tourists, and others interested in preserving the recreational value of Oregon's lakes. Because of the large number of lakes and reservoirs in Oregon, a single report covering the State would be bulky. Therefore, the lake information is being issued in several volumes on a county or multicounty basis. Volume 1, released in 1973, covered Clatsop, Columbia, and Tillamook Counties; volume 2 (1974 included Benton, Lincoln, and Polk Counties; and volume 3 (1975) included Hood River, Multnomah, Washington, and Yamhill Counties. Clackamas County was selected for volume 4. (See figure 1.) In addition to office compilation of existing data, each lake was visited. Most visits were made in summer or early fall when lakes were most accessible and when water temperature and biological activity were near maximum.

Oregon

Some engineering geology problems at Mammoth Cave National Park, Kentucky

The U.S. Geological Survey, at the request of the rational Park Service, participated in a field symposium May 22-26, 1967, at Mammoth Cave National Park, Kentucky. This symposium, held by the National Park Service, was to determine the applicability of the Wilderness Act of 1964 to underground and surface portions of the Park (W. Drew Chick, Jr., written communication, 1967). Scientific evidence bearing on the relationships between human surface activities and natural underground openings was examined and discussed at the symposium. This report discusses relations between various types of surface activities and physical damage to the cave openings and features. Additional interpretive material is taken from the literature and from limited laboratory information. Possible hydrologic and biologic effects are not considered here, but were investigated by other members of the symposium. Hydrologic effects are discussed in companion report by Robert V. Cushman of the Geological Survey.

Kentucky

Mercury bioaccumulation studies in the National Water-Quality Assessment Program--biological data from New York and South Carolina, 2005-2009

The U.S. Geological Survey National Water-Quality Assessment Program conducted a multidisciplinary study from 2005–09 to investigate the bioaccumulation of mercury in streams from two contrasting environmental settings. Study areas were located in the central Adirondack Mountains region of New York and the Inner Coastal Plain of South Carolina. Fish, macroinvertebrates, periphyton (attached algae and associated material), detritus, and terrestrial leaf litter were collected. Fish were analyzed for total mercury; macroinvertebrates, periphyton, and terrestrial leaf litter were analyzed for total mercury and methylmercury; and select samples of fish, macroinvertebrates, periphyton, detritus, and terrestrial leaf litter were analyzed for stable isotopes of carbon (δ13C) and nitrogen (δ15N). This report presents methodology and data on total mercury, methylmercury, stable isotopes, and other ecologically relevant measurements in biological tissues.

New York, South Carolina

Multi-region assessment of chemical mixture exposures and predicted cumulative effects in USA wadeable urban/agriculture-gradient streams

Chemical-contaminant mixtures are widely reported in large stream reaches in urban/agriculture-developed watersheds, but mixture compositions and aggregate biological effects are less well understood in corresponding smaller headwaters , which comprise most of stream length, riparian connectivity, and spatial biodiversity. During 2014–2017, the U.S. Geological Survey (USGS) measured 389 unique organic analytes (pharmaceutical, pesticide, organic wastewater indicators) in 305 headwater streams within four contiguous United States (US) regions. Potential aquatic biological effects were evaluated for estimated maximum and median exposure conditions using multiple lines of evidence, including occurrence/concentrations of designed-bioactive pesticides and pharmaceuticals and cumulative risk screening based on vertebrate-centric ToxCast™ exposure-response data and on invertebrate and nonvascular plant aquatic life benchmarks. Mixed-contaminant exposures were ubiquitous and varied, with 78% (304) of analytes detected at least once and cumulative maximum concentrations up to more than 156,000 ng/L. Designed bioactives represented 83% of detected analytes. Contaminant summary metrics correlated strong-positive (rho (ρ): 0.569–0.719) to multiple watershed-development metrics, only weak-positive to point-source discharges (ρ: 0.225–353), and moderate- to strong-negative with multiple instream invertebrate metrics (ρ: −0.373 to −0.652). Risk screening indicated common exposures with high probability of vertebrate-centric molecular effects and of acute toxicity to invertebrates, respectively. The results confirm exposures to broad and diverse contaminant mixtures and provide convincing multiple lines of evidence that chemical contaminants contribute substantially to adverse multi-stressor effects in headwater-stream communities.

Science of the Total Environment

Influence of exchange flow between the channel and hyporheic zone on nitrate production in a small mountain stream

Variation in local exchange of flows between the channel and hyporheic zone produced temporally shifting concentration gradients of dissolved oxygen, nitrate, and ammonium in subsurface waters of a small, gravel-cobble bed stream. Channel water advected laterally supplied dissolved oxygen, and groundwater supplied ammonium to support hyporheic nitrification. Nitrate production was highest in sediment slurries from aerobic hyporheic sites, was absent at nearly anoxic sites, and was stopped by nitrification inhibitors (chlorate and nitrapyrin). Ammonium amendment to sediment slurries only slightly enhanced nitrate production indicating that sorption competed with biota for available substrate. Nitrate concentration increased from 75–130 μg N/L during 9 d of ammonium amendment to a hyporheic subsurface flow. Ammonium concentration rose slowly relative to a sulfate tracer initially, and declined slowly after cutoff as ammonium desorbed. Nitrate levels remained elevated for 6 d after cutoff as desorbed ammonium became biotically available. Interactions between the channel's hydrology, lithology, and biology such as we observed in nitrate production are probably more common than reported. However, the magnitude of the resulting nutrient flux will depend on factors which determine the depth and lateral extension of suitable hyporheic habitat.

California

Protocols for collection of streamflow, water-quality, streambed-sediment, periphyton, macroinvertebrate, fish, and habitat data to describe stream quality for the Hydrobiological Monitoring Program, Equus Beds Aquifer Storage and Recovery Program, city of Wichita, Kansas

The city of Wichita, Kansas uses the Equus Beds aquifer, one of two sources, for municipal water supply. To meet future water needs, plans for artificial recharge of the aquifer have been implemented in several phases. Phase I of the Equus Beds Aquifer Storage and Recovery (ASR) Program began with injection of water from the Little Arkansas River into the aquifer for storage and subsequent recovery in 2006. Construction of a river intake structure and surface-water treatment plant began as implementation of Phase II of the Equus Beds ASR Program in 2010. An important aspect of the ASR Program is the monitoring of water quality and the effects of recharge activities on stream conditions. Physical, chemical, and biological data provide the basis for an integrated assessment of stream quality. This report describes protocols for collecting streamflow, water-quality, streambed-sediment, periphyton, macroinvertebrate, fish, and habitat data as part of the city of Wichita's hydrobiological monitoring program (HBMP). Following consistent and reliable methods for data collection and processing is imperative for the long-term success of the monitoring program.

Kansas

Fish assemblage composition and mapped mesohabitat features over a range of streamflows in the Middle Rio Grande, New Mexico, winter 2011-12, summer 2012

This report documents differences in the mapped spatial extents and physical characteristics of in-channel fish habitat evaluated at the mesohabitat scale during winter 2011–12 (moderate streamflow) and summer 2012 (low streamflow) at 15 sites on the Middle Rio Grande in New Mexico starting about 3 kilometers downstream from Cochiti Dam and ending about 40 kilometers upstream from Elephant Butte Reservoir. The results of mesohabitat mapping, physical characterization, and fish assemblage surveys are summarized from the data that were collected. The report also presents general comparisons of physical mesohabitat data, such as wetted area and substrate type, and biological mesohabitat data, which included fish assemblage composition, species richness, Rio Grande silvery minnow relative abundance, and Rio Grande silvery minnow catch per unit effort.

New Mexico

Water resources data--Illinois, water year 2003

This annual Water-Data Report for Illinois contains current water year (Oct. 1, 2003, to Sept. 30, 2004) and historical data of discharge, stage, water quality and biology of streams; stage of lakes and reservoirs; levels and quality of ground water; and records of precipitation, air temperature, dew point, solar radiation, and wind speed. The current year's (2004) data provided in this report include (1) discharge for 177 surface-water gaging stations and for 10 crest-stage partial-record stations; (2) stage for 27 surface-water gaging stations; (3) stage for 8 reservoirs; (4) water-quality records for 7 surface-water stations; (5) sediment-discharge records for 16 surface-water stations; (6) water-level records for 14 ground-water wells; (7) precipitation records for 50 rain gages; (8) records of air temperature, dew point, solar radiation and wind speed for 1 meteorological station; and (9) biological records for 6 sample sites. Also included are miscellaneous data collected at various sites not in the systematic data-collection network. Data were collected and compiled as a part of the National Water Information System (NWIS) maintained by the U.S. Geological Survey in cooperation with Federal, State, and local agencies.

Water Data Report

Water Resources Data for Illinois - Water Year 2005 (Includes Historical Data)

This annual Water-Data Report for Illinois contains current water year (Oct. 1, 2004, to Sept. 30, 2005) and historical data of discharge, stage, water quality and biology of streams; stage of lakes and reservoirs; levels and quality of ground water; and records of precipitation, air temperature, dew point, solar radiation, and wind speed. The current year's (2005) data provided in this report include (1) discharge for 182 surface-water gaging stations and for 9 crest-stage partial-record stations; (2) stage for 33 surface-water gaging stations; (3) water-quality records for 10 surface-water stations; (4) sediment-discharge records for 14 surface-water stations; (5) water-level records for 98 ground-water wells; (6) water-quality records for 17 ground-water wells; (7) precipitation records for 48 rain gages; (8) records of air temperature, dew point, solar radiation and wind speed for 1 meteorological station; and (9) biological records for 6 sample sites. Also included are miscellaneous data collected at various sites not in the systematic data-collection network. Data were collected and compiled as a part of the National Water Information System (NWIS) maintained by the U.S. Geological Survey in cooperation with Federal, State, and local agencies.

Water Data Report

Lakes of Oregon, Volume 1: Clatsop, Columbia, and Tillamook Counties

An inventory of lakes and reservoirs in Oregon has been needed for many years. Records have long been collected throughout the State to assess the quantity and quality of water from streams, but few data have been collected on water stored in Oregon's lakes and reservoirs. Such data are essential for a complete evaluation of the total surface-water supply of the State and to provide a basis for answering questions about Oregon's lakes. Much of the information on lakes and reservoirs previously collected by Federal and State agencies has never been published. These data were compiled and used as a basis for collecting additional information. This report provides information for use by city, county, and State planning groups as well as for sportsmen, tourists, and others interested in preserving the recreational value of Oregon's lakes. Because of the large number of lakes and reservoirs in Oregon, a single report covering the State would be bulky. Therefore, the best approach seemed to be to publish several volumes on a county or multicounty basis, and Clatsop, Columbia, and Tillamook Counties were selected for the first report. (See fig. 1.) In addition to office compilation of existing data, most lakes were visited at least once. Visits were made in late summer or early fall when lakes were most accessible and when water temperature and biological activity are at a maximum. Some lakes previously studied by other Federal or State agencies and included in this report were not visited during the study.

Oregon

Thiamine Deficiency Complex Workshop final report: November 6-7, 2008, Ann Arbor, MI

Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.

Research Status Report