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Aspergillosis (Avian) case definition for wildlife

Diagnostic laboratories receive carcasses and samples for diagnostic evaluation and pathogen/toxin detection. Case definitions bring clarity and consistency to the evaluation process. Their use within and between organizations allows more uniform reporting of diseases and etiologic agents. The intent of a case definition is to provide scientifically based criteria for determining: (a) if an individual carcass has a specific disease and degree of confidence in that diagnosis and (b) if there is evidence of a pathogen or toxin in a carcass or sample (for example, swab, tissue sample, skin scraping, blood/serum sample, environmental sample, or other). This case definition is specific to aspergillosis and applies to all avian species.

Techniques and Methods

Geospatial PDF map of the compilation of GIS data for the mineral industries and related infrastructure of Africa

Introduction In 2021, the U.S. Geological Survey's (USGS) National Minerals Information Center (NMIC) completed the project titled "Compilation of geospatial data for the mineral industries and related infrastructure of Africa." This project aimed to leverage the expertise and capabilities of the NMIC to collect, synthesize, and interpret geospatial data to inform on the extractive resources of the African region and expand the NMIC's understanding on the impact of mineral industry of African nations in the global economy. The African region, which comprises the independent nations that make up the African continent and its associated islands and dependencies, consists of a total of 58 mineral producing countries. The primary objective of this effort was to create a fully attributed Geographic Information System (GIS) portraying existing mining infrastructure, resources, and development capacity across Africa along with the related infrastructure capable of supporting current (for the reference year 2018) and future extractive industry operations in the region. The compiled GIS geodatabase with supporting documentation including comprehensive metadata was published as a USGS data release titled "Compilation of Geospatial Data (GIS) for the Mineral Industries and Related Infrastructure of Africa." This georeferenced portable document format (GeoPDF) map sheet presents a new geographic information product containing a partial representation of the GIS data. This GeoPDF map provides a visual comparison of the distribution of mineral industry and related infrastructure GIS data, which contributes to a deeper understanding of the intersections and complexities of the extractive industries within Africa.

Open-File Report

Geologic framework and Holocene sand thickness offshore of Seven Mile Island, New Jersey

The U.S. Geological Survey assessed the Quaternary evolution of Seven Mile Island, New Jersey, to quantify coastal sediment availability, which is crucial for establishing sediment budgets, understanding sediment dispersal, and managing coastlines. This report presents preliminary interpretations of seismic profiles, maps of Holocene sand thickness from the shoreline to 2 kilometers offshore, and tables quantifying the volume of available sediment along the coastal margin based on data collected during 2021 and 2022. The results reveal spatial variability in the thickness and cross-shore extent of Holocene sand. The study area was separated into northern, central, and southern zones by using underlying stratigraphy and geomorphic features. The characteristics and spatial extent of the Holocene sand deposit indicate that hydrodynamic processes contribute to its spatial variability. Northern Seven Mile Island contains the thickest deposits of Holocene sand that were formed by sediment bypass around the Townsends Inlet ebb-tidal delta. Specifically, swash bars have welded to the updrift end of Seven Mile Island and have formed thick deposits of Holocene sand that thicken landward and taper seaward. Despite their thickness, these deposits have the smallest cross-shore extent; therefore, northern Seven Mile Island has the smallest volume of Holocene sand of the three geomorphic zones. Central Seven Mile Island has the thinnest Holocene sand deposits because this section of the barrier island is outside the influence of ebb-tidal deltas. Southern Seven Mile Island has the greatest volumes of Holocene sand because of increased accommodation and deposition adjacent to the Hereford Inlet ebb-tidal delta. Even though tidal inlets exert variable influence on the three geomorphic zones, sediment is distributed fairly uniformly within each geomorphic zone; each of the three zones contains 31.05–36.48 percent of the volume of available Holocene sand.

New Jersey

Using public participatory geographic information systems (PPGIS) to explore uses and values for Mojave Trails National Monument, California

Many people ascribe a variety of values to public lands and waters, but some values are more difficult to assess and quantify than others. Public participatory geographic information systems (PPGIS) are tools that have been used to help quantify and map the public’s diverse values for a landscape. This work describes the first known Office of Management and Budget–approved use of PPGIS by a Department of the Interior bureau. The U.S. Geological Survey developed an internet-based application to aid in gathering PPGIS data, called Values Mapping for Planning in Regional Ecosystems (VaMPIRE). Further, this work describes the first pilot of the VaMPIRE application in coordination with the Bureau of Land Management to collect spatial data and other survey data regarding the public’s uses of and values for locations within Mojave Trails National Monument. We emailed the link to the VaMPIRE application to an interested party email list in 2024 with 207 valid emails and received 74 responses; we also received 47 responses from members of an off-roading social media group. Of the list of 16 value options, recreation was the most popular value for the monument, followed by wilderness and inspirational. Over 1,000 points were placed throughout the monument, indicating locations people use or value, with the locations spread throughout the entire monument. Additionally, most survey respondents stated their ability to receive benefits in locations they mapped would not change in response to a hypothetical scenario related to recreational facility development. This report describes exploratory results from the first use of the VaMPIRE tool in Mojave Trails National Monument and includes reflections on how the process went and considerations for future use of VaMPIRE.

California

Preliminary geologic map of the Southern Santa Rosa Mountains and Borrego Badlands, San Diego County, Southern California

This investigation delineates the geologic framework of an area of 75 square kilometers (km 2 ) located west of the Salton Sea in southern California (fig. 1, on sheet 1). The study area encompasses the south flank of the Santa Rosa Mountains and the eastern part of the Borrego Badlands (sheet 1). In this study area, regionally important stratigraphic and structural elements collectively inform the late Cenozoic geologic evolution of the Anza-Borrego sector of the Salton Trough province. Critical stratigraphic and structural elements in the map area include the following: The well exposed sequence of late Cenozoic, nonmarine sedimentary rocks that filled the Anza-Borrego subbasin (fig. 1) of the Salton Trough; A tectonic boundary that—in the southern Santa Rosa Mountains—separates the sedimentary strata from underlying crystalline rocks of Peninsular Ranges type. This tectonic boundary, named the West Salton Detachment Fault System by Axen and Fletcher (1998), is projected to underlie all late Cenozoic sedimentary strata in the Anza-Borrego subbasin of the Salton Trough; A variety of transpressional, transtensional, and strike-slip structures that have deformed the late Cenozoic sedimentary strata and collectively guided syntectonic and posttectonic depositional events within the Anza-Borrego subbasin of the Salton Trough; and The southeasternmost surface expression of the Clark Fault, a major strand of the dextral San Jacinto Fault Zone. Geologic mapping and analysis for this investigation focused on clarifying geologic relations among these four stratigraphic and structural aspects in the map area.

California

Reconstructing the Quaternary depositional history using geologic mapping and three-dimensional modeling of the subsurface near Fort Morgan, northeastern Colorado

Centered on Fort Morgan, Colorado, this study is intended to build from previous work by adding a three-dimensional (3D) view of the subsurface to better understand the depositional history of Quaternary deposits. A 1:100,000 scale geologic map was made by combining previous geologic maps, regional soil maps, and recent field investigations. In addition to the geologic mapping, drill hole lithologic data from water wells and oil and gas exploration were compiled and lithologic units simplified to best represent the stratigraphy of the Quaternary deposits. From these subsurface data, a 3D subsurface model was constructed, trimmed at the surface by a digital elevation model, and a bedrock surface foundation gridded from drill hole data was added. The surface of the 3D model was then compared visually to the surficial geologic map. Cross sections were constructed from the 3D model and compared to site-specific drilling that was done as part of this project. Finally, the model was examined in detail to reconstruct the depositional history of the subsurface alluvial and eolian units. Alluvial and fluvial drainage basins exposed in the subsurface have a greater areal extent than the present-day narrow drainages. Older eolian sand in the subsurface tends to be interbedded with loess indicating coeval deposition. Holocene sand, both eroded from bedrock exposed at the surface north of the study area and reworked from the South Platte River, buries most of the interbedded older sand and loess.

Colorado

Water-quality assessment of south-central Texas: Occurrence and distribution of volatile organic compounds in surface water and ground water, 1983-94, and implications for future monitoring

The study area of the South-Central Texas study unit of the National Water-Quality Assessment Program comprises the Edwards aquifer in the San Antonio region and its catchment area. The first phase of the assessment includes evaluation of existing water-quality data for surface water and ground water, including volatile organic compounds, to determine the scope of planned monitoring. Most analyses of volatile organic compounds in surface water are from the National Pollutant Discharge Elimination System sites in San Antonio, Texas. Nine volatile organic compounds were detected at the six sites. The three compounds with the most detections at National Pollutant Discharge Elimination System sites are 1,2,4-trimethylbenzene, toluene, and xylene. Analysis of volatile organic compounds in ground water was limited to Edwards aquifer wells. Twenty-eight volatile organic compounds were detected in samples from 89 wells. The five most commonly detected compounds in samples from wells, in descending order, are tetrachloroethene, trichloroethene, bromoform, chloroform, and dibromochloromethane. Detections of volatile organic compounds in surface water and ground water within the South-Central Texas study area are limited to site-specific sources associated with development; therefore, planned monitoring for possible detections of volatile organic compounds as part of the National Water-Quality Assessment Program will emphasize areas of expanding population and development. Monitoring of volatile organic compounds is planned at National Pollutant Discharge Elimination System sites, at basic fixed surface-water sites, and in the ground-water study-unit surveys.

Texas

Spectral characteristics and mapping of lithium-rich playas in the Basin and Range Province, western United States

This report presents a comprehensive set of prospectivity maps for lithium in brines located within the playas of the Basin and Range Province of western United States. The prospectivity assessment is based on criteria established in the descriptive deposit model outlined in a previous U.S. Geological Survey report, with a focus on regional remote sensing methodologies. The playas within the study area have been systematically ranked according to several key factors, including size, the presence and abundance of source rocks, vegetation as an indicator of water availability, documented prospects, and data products derived from the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) sensor. Notably, the deposits in the playa of Clayton Valley make it stand out as the sole lithium brine-producing playa in the United States. The ASTER sensor provides optimal regional coverage, characterized by a 60-kilometer swath width and unique multispectral capabilities that are not available with other remote sensing instruments. This report and the accompanying maps are intended to serve as resources for further multidisciplinary assessments of lithium or other elements or commodities where prospectivity can be inferred from the presence of proxies such as alteration minerals.

Arizona, Baja California, California, Chihuahua, I

Agricultural return flow dynamics on a reach of the East River, Colorado, as assessed by mass balance

The U.S. Geological Survey, in cooperation with the Upper Gunnison River Water Conservancy District, studied historical streamflow in a reach of the East River, Colorado, to gain a preliminary understanding of return flow dynamics. Return flow is agricultural irrigation water that is not consumed by evapotranspiration and instead reaches streams by surface and subsurface flow paths. The study reach had a contributing area of 50 square miles and contained 5.23 square miles of pastures irrigated with water diverted from the East River and its tributaries. By comparing upstream inflows to downstream outflows, the net water balance of the study reach from 1994 to 2023 was assessed. Two general hydrologic conditions for the study reach were identified. One hydrologic condition was characterized by a net loss or consumption of water, termed here as general deficit. This general deficit condition extended about 16 years, from 1997 to 2012. During general deficit years, there was usually a notable net loss of streamflow from April through July, and a small net gain, possibly related to return flows, occurred in August about 75 days after the minimums for losses. The second hydrologic condition was characterized by a net gain of water, termed here as general surplus. This second condition extended about 10 years, from 2014 to 2023. During general surplus years, two separate transitions from net loss to net gain commonly occurred during June through August. Losses during general surplus years were smaller than losses during general deficit years, the respective gains were larger, and times between losses and gains were about 18 and 22 days. Differences between the two hydrologic conditions could reflect interactions among irrigation water, available capacity to store additional shallow groundwater, and streamflow. However, deciphering the causes for the shifts between the two general hydrologic conditions was beyond the scope of this report.

Colorado

Groundwater quality and groundwater levels in Dougherty County, Georgia, April 2020 through January 2023

The Upper Floridan aquifer is the uppermost reliable groundwater source in southwest Georgia. The aquifer lies on top of the Claiborne, Clayton, and Cretaceous aquifers, all of which exhibited water-level declines in the 1960s and 1970s. The U.S. Geological Survey has been working cooperatively with Albany Utilities to monitor groundwater quality and availability in these aquifers since 1977. Flow direction in the Upper Floridan aquifer is to the south and toward the Flint River. During the past 3 years, water levels varied above and below period-of-record median values. Water levels in the Upper Floridan aquifer were primarily above or at median levels during 2020 and 2021 and at or below median levels during 2022. Water levels in the Claiborne aquifer were above median levels, whereas water levels in the Clayton aquifer were at or below median levels, and in the Cretaceous aquifer system were close to median levels. During January 2021, eight wells were sampled for major ions, including nitrate plus nitrite as nitrogen (N). Nitrate plus nitrite as N concentrations ranged from 2.3 to 10.5 milligrams per liter (mg/L). During December 2021, seven wells were sampled for major ions, including nitrate plus nitrite as N. Nitrate plus nitrite as N concentrations ranged from 3.9 to 9.9 mg/L. During November 2022, eight wells were sampled for major ions, including nitrate plus nitrite as N. Nitrate plus nitrite as N concentrations ranged from 3.9 to 10.0 mg/L. Two wells were also sampled for per- and polyfluoroalkyl substances during November 2022.

Georgia

Evaluation of ground-water flow and hydrologic budget for Lake Five-O, a seepage lake in northwestern Florida

Temporal and spatial distributions of ground-water inflow to, and leakage from Lake Five-O, a softwater, seepage lake in northwestern Florida, were evaluated using hydrologic data and simulation models of the shallow ground-water system adjacent to the lake. The simulation models indicate that ground-water inflow to the lake and leakage from the lake to the ground-water system are the dominant components in the total inflow (precipitation plus ground-water inflow) and total outflow (evaporation plus leakage) budgets of Lake Five-O. Simlulated ground-water inflow and leakage were approximately 4 and 5 times larger than precipitation inputs and evaporative losses, respectively, during calendar years 1989-90. Exchanges of water between Lake Five-O and the ground-water system were consistently larger than atmospheric-lake exchanges. A consistent pattern of shallow ground-water inflow and deep leakage was also evident throughout the study period. The mean time of travel from ground-water that discharges at Lake Five-O (time from recharge at the water table to discharge at the lake) was estimated to be within a range of 3 to 6 years. Flow-path evaluations indicated that the intermediate confining unit probably has a negligible influence on the geochemistry of ground-water inflow to Lake Five-O. The hydrologic budgets and flow-path evaluations provide critical information for developing geochemical budgets for Lake Five-O and for improving the understanding of the relative importance of various processes that regulate the acid-neutralizing capacity of softwater seepage lakes in Florida.

Florida

Pesticides in surface water from three agricultural basins in south-central Georgia, 1993-97

Twenty-two of 43 pesticides analyzed were detected in 128 water samples collected from the Tucsawhatchee Creek, the Little River, and the Withlacoochee River. These streams drain agricultural basins in south-central Georgia and were sampled from March 1993 through June 1995. Herbicides were detected more frequently than insecticides. The most frequently detected herbicides were atrazine and metolachlor and the most frequently detected insecticide was carbaryl. Pesticide concentrations in the three streams were low and did not exceed U.S. Environmental Protection Agency drinking water standards. The maximum pesticide concentration was 2.6 mg/L (micrograms per liter) for propargite, a miticide detected in only one sample. The maximum concentrations of the remaining 21 pesticides were less than 0.25 mg/L. The median concentrations were equal to the method detection limit for all pesticides except atrazine (0.008 mg/L) and metolachlor (0.012 mg/L). The ratio of herbicide detections to nondetections was largest in the planting season, smaller in the harvest season and smallest in the fallow season for the three basins. The same pattern existed for the insecticide ratios in the Little River and the Withlacoochee River. Pairwise correlations between concentrations of atrazine and metolachlor, and four parameters (discharge, and concentrations of dissolved organic carbon, suspended organic carbon, and suspended sediment) were evaluated for each stream. The strongest correlations existed between metolachlor and mean daily discharge, and metolachlor and sediment in the Withlacoochee River. The only significant correlation for the Little River was between atrazine and suspended sediment.

Georgia

Continuous hydrologic simulation of runoff for the Middle Fork and South Fork of the Beargrass Creek basin in Jefferson County, Kentucky

The Hydrological Simulation Pro-gram-FORTRAN (HSPF) was applied to an urban drainage basin in Jefferson County, Ky to integrate the large amounts of information being collected on water quantity and quality into an analytical framework that could be used as a management and planning tool. Hydrologic response units were developed using geographic data and a K-means analysis to characterize important hydrologic and physical factors in the basin. The Hydrological Simulation Program FORTRAN Expert System (HSPEXP) was used to calibrate the model parameters for the Middle Fork Beargrass Creek Basin for 3 years (June 1, 1991, to May 31, 1994) of 5-minute streamflow and precipitation time series, and 3 years of hourly pan-evaporation time series. The calibrated model parameters were applied to the South Fork Beargrass Creek Basin for confirmation. The model confirmation results indicated that the model simulated the system within acceptable tolerances. The coefficient of determination and coefficient of model-fit efficiency between simulated and observed daily flows were 0.91 and 0.82, respectively, for model calibration and 0.88 and 0.77, respectively, for model confirmation. The model is most sensitive to estimates of the area of effective impervious land in the basin; the spatial distribution of rain-fall; and the lower-zone evapotranspiration, lower-zone nominal storage, and infiltration-capacity parameters during recession and low-flow periods. The error contribution from these sources varies with season and antecedent conditions.

Kentucky

Continuous monitoring and temporal variability of fluorescence of dissolved organic matter in karst groundwater of the Edwards aquifer, south-central Texas, 2019–24

Widespread urbanization on the Edwards aquifer recharge zone in south-central Texas has prompted the development of new approaches and tools for evaluating the current and future status of water quality in the San Antonio and Barton Springs segments of the Edwards aquifer. The U.S. Geological Survey, in cooperation with the San Antonio Water System and the City of Austin, applied continuous monitoring of fluorescence of dissolved organic matter (fDOM) to characterize the sources and transport of dissolved organic matter and associated constituents in the Edwards aquifer. Continuous fDOM time-series data were adjusted using empirically derived temperature, turbidity, and inner-filter-effect correction factors prior to analysis and interpretation. Fully corrected fDOM time-series data from the study sites were evaluated for short- and long-term temporal variability in fDOM in the context of the hydrologic and climatic conditions that occurred during the 5-year study period to understand vulnerability of the aquifer to potential contaminants in recharge. Study results indicate that fDOM is an effective proxy for dissolved organic carbon that, in turn, is indicative of the influx of recent surface water and associated contaminants, and thus, aquifer vulnerability to those contaminants. Although other continuously monitored water-quality parameters provide insights into changes in water quality in response to varying hydrologic conditions, the quantitative relation between fDOM and dissolved organic carbon directly indicates the timing and magnitude of pulses of organic constituents derived from the land surface, whereas other water-quality parameters do not.

Texas

The distribution of bromide in water in the Floridan aquifer system, Duval County, northeastern Florida

Although Duval County, Florida, has ample ground-water resources for public supply, the potential exists for a problem with excessive disinfectant by-products. These disinfectant by-products result from the treatment of raw water containing low concentrations of bromide and naturally occurring organic compounds. Because of this potential problem, the relation of bromide concentrations to aquifer tapped, well location and depth, and chemical characteristics of water in the Floridan aquifer system underlying Duval County were studied to determine if these relations could be applied to delineate water with low-bromide concentrations for future supplies. In 1992, water samples from 106 wells that tap the Floridan aquifer system were analyzed for bromide and major dissolved constituents. A comparison of bromide concentrations from the 1992 sampling with data from earlier studies (1979-80) indicates that higher bromide concentrations were detected during the earlier studies. The difference between the old and new data is probably because of a change in analytical methodology in the analysis of samples. Bromide concentrations exceeded the detection limit (0.10 milligrams per liter) in water from 28 of the 106 wells (26 percent) sampled in 1992. The maximum concentration was 0.56 milligrams per liter. There were no relations between bromide and major dissolved constituents, well depth, or aquifer tapped that would be useful for determining bromide concentrations. Areal patterns of bromide occurrence are not clearly defined, but areas with relatively high bromide concentrations tend to be located in a triangular area near the community of Sunbeam, Florida, and along the St. Johns River throughout Duval County.

Florida

Key minerals in energy transmission

The electrical grid relies on minerals with unique properties to transform, transmit, and convert electricity. Transmission needs are growing—to support the expansion of data centers and link diverse energy resources into the grid. This expansion will require greater quantities of minerals. Although some minerals are produced in the United States, the United States relies on imports for others. This infographic shows the key minerals that support energy transmission, and how reliant the United States is on imports for these minerals.

General Information Product

Using the D-Claw software package to model lahars in the Middle Fork Nooksack River drainage and beyond, Mount Baker, Washington

Lahars, or volcanic mudflows, are the most hazardous eruption-related phenomena that will affect communities living along rivers that originate on Mount Baker. In the past 15,000 years, the largest lahars from Mount Baker have affected the Middle Fork Nooksack River drainage and beyond. Here we use the physics-based D-Claw software package to model nine lahar scenarios that are initiated as water-saturated landslides between Sherman Crater and the Roman Wall on the Mount Baker edifice and flow down the Middle Fork Nooksack River. The scenarios range in volume from 1 to 260 million cubic meters and have an initial hydraulic permeability from 10 −12 to 10 −10 meters squared. Model output includes data such as flow depth, velocity, runout distance, area inundated, arrival time, and sediment concentration as well as information that allows scientists to calculate other important hydrologic characteristics such as lahar discharge. These data are important to officials who have the responsibility to plan for, or take mitigation measures against, future Mount Baker lahars. To check the validity of the D-Claw results, we compare the scenarios to known geologic information. We also compare D-Claw results with empirical models that have been used in the past to determine potential inundation areas, runout distances, and arrival times. These comparisons highlight similarities and differences between empirical and physics-based models. We also present D-Claw scenario-based animations to help scientists, officials, and lay people alike to visualize how future lahars could affect communities.

Washington