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Geohydrology and water quality of the stratified-drift aquifers in Upper Buttermilk Creek and Danby Creek Valleys, Town of Danby, Tompkins County, New York

In 2006, the U.S. Geological Survey, in cooperation with the Town of Danby and the Tompkins County Planning Department, began a study of the stratified-drift aquifers in the upper Buttermilk Creek and Danby Creek valleys in the Town of Danby, Tompkins County, New York. In the northern part of the north-draining upper Buttermilk Creek valley, there is only one sand and gravel aquifer, a confined basal unit that overlies bedrock. In the southern part of upper Buttermilk Creek valley, there are as many as four sand and gravel aquifers, two are unconfined and two are confined. In the south-draining Danby Creek valley, there is an unconfined aquifer consisting of outwash and kame sand and gravel (deposited by glacial meltwaters during the late Pleistocene Epoch) and alluvial silt, sand, and gravel (deposited by streams during the Holocene Epoch). In addition, throughout the study area, there are several small local unconfined aquifers where large tributaries deposited alluvial fans in the valley. The principal sources of recharge to the unconfined aquifers in the study area include direct infiltration of precipitation (rain and snowmelt) at land surface, unchanneled surface runoff from adjacent hillsides that seeps into the aquifer along the edges of the valley, groundwater inflow from adjacent till and bedrock that enters the aquifer along the sides of the valley, and seepage loss from upland-tributary streams where they flow over their alluvial fans in the valley. The percentages of all sources of recharge to the contiguous unconfined aquifer in Danby Creek valley include 16 percent from precipitation that falls directly over the aquifer, 55 percent from unchanneled surface runoff and groundwater inflow from hillsides, and 29 percent from losing tributary streams that cross the aquifer. The total annual recharge to the contiguous unconfined aquifer is 2.56 cubic feet per second (604 million gallons per year). The principal sources of recharge to the confined aquifers include precipitation that falls directly on the surficial confining unit, which then slowly flows vertically downward through the fine-grained sediments and enters the confined aquifer, and groundwater inflow from till and bedrock that borders the aquifer along adjacent hillsides and at the bottom of the valley. In addition, there is substantial amounts of recharge to the confined aquifers where the confining units are locally absent (forming windows) and where parts of the confining units consist of sediments of low to moderate permeability (forming a semiconfining layer). In the northern part of the study area (upper Buttermilk Creek valley), groundwater in the stratified-drift aquifers discharges to (1) domestic and commercial wells; (2) Buttermilk Creek in the area near the northern town border, and (3) and a small unnamed stream in a ravine in Buttermilk State Park just north of the town border. In the southern part of the study area (Danby Creek valley), groundwater discharges (1) to domestic, commercial, and farm wells; (2) to Danby Creek; (3) to a large wetland in the central parts of Danby Creek valley; and (4) as losses because of plant uptake and evaporation. About 300 people depend on groundwater from the upper Buttermilk Creek and Danby Creek stratified-drift aquifer system. An unconfined surficial aquifer about 8,000 feet (ft) long and as much as 800 ft wide, with a saturated thickness of about 20 ft, occupies the lower (southeastern most) 8,000 ft of Danby Creek valley within the Town of Danby. However, because the aquifer is thin, the volume of water stored in the aquifer is small and the potential for induced recharge from Danby Creek during summer periods of low flow is also small, an array of wells would probably be needed to provide sustainable continuous amount of water to large water users such as municipalities and industries. Additional data and a groundwater flow model would be required to estimate sustainable withdrawal from the confined aquifers in upper Buttermilk Creek valley. Well data from water-well drillers through 2012 indicate that the confined aquifers in upper Buttermilk Creek valley are thin (typically about 10 feet thick) and the reported well-yield data suggest these aquifers may not be capable of supplying sufficient water to meet the needs of municipalities and industries. However, additional geohydrologic data leading to calibration of a groundwater flow model would be needed to properly evaluate the long-term (multiple years) potential yield of the confined aquifer system in upper Buttermilk Creek valley and of the unconfined aquifer in Danby Creek valley. During 2007–10, groundwater samples were collected from 13 wells including 7 wells that are completed in the confined sand and gravel aquifers, 1 well that is completed in the unconfined aquifer, and 5 wells that are completed in the bedrock aquifers. Calcium dominates the cation composition and bicarbonate dominates the anion composition in most groundwater. Water quality in the study area generally meets state and Federal drinking-water standards but concentrations of some constituents exceeded the standards. The standards that were exceeded include sodium (3 samples), dissolved solids (1 sample), iron (3 samples), manganese (8 samples), and arsenic (1 sample).

New York↗

A salt diapir-related Mississippi Valley-type deposit: The Bou Jaber Pb-Zn-Ba-F deposit, Tunisia: Fluid inclusion and isotope study

The Bou Jaber Ba-F-Pb-Zn deposit is located at the edge of the Bou Jaber Triassic salt diapir in the Tunisia Salt Diapir Province. The ores are unconformity and fault-controlled and occur as subvertical column-shaped bodies developed in dissolution-collapse breccias and in cavities within the Late Aptian platform carbonate rocks, which are covered unconformably by impermeable shales and marls of the Fahdene Formation (Late Albian–Cenomanian age). The host rock is hydrothermally altered to ankerite proximal to and within the ore bodies. Quartz, as fine-grained bipyramidal crystals, formed during hydrothermal alteration of the host rocks. The ore mineral assemblage is composed of barite, fluorite, sphalerite, and galena in decreasing abundance. The ore zones outline distinct depositional events: sphalerite-galena, barite-ankerite, and fluorite. Fluid inclusions, commonly oil-rich, have distinct fluid salinities and homogenization temperatures for each of these events: sphalerite-galena (17 to 24 wt% NaCl eq., and Th from 112 to 136 °C); ankerite-barite (11 to 17 wt% NaCl eq., and Th from 100 to 130 °C); fluorite (19 to 21 wt% NaCl eq., Th from 140 to 165 °C). The mean temperature of the ore fluids decreased from sphalerite (125 °C) to barite (115 °C) and increased during fluorite deposition (152 °C); then decreased to ∼110 °C during late calcite precipitation. Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) analyses of fluid inclusions in fluorite are metal rich (hundreds to thousands ppm Pb, Zn, Cu, Fe) but the inclusions in barite are deficient in Pb, Zn, Cu, Fe. Inclusions in fluorite have Cl/Br and Na/Br ratios of several thousand, consistent with dissolution of halite while the inclusions analysed in barite have values lower than seawater which are indicative of a Br-enriched brine derived from evaporation plus a component of halite dissolution. The salinity of the barite-hosted fluid inclusions is less than obtained simply by the evaporation of seawater to halite saturation and requires a dilution of more than two times by meteoric water. The higher K/Na values in fluid inclusions from barite suggest that the brines interacted with K-rich rocks in the basement or siliciclastic sediments in the basin. Carbonate gangue minerals (ankerite and calcite) have δ 13 C and δ 18 O values that are close to the carbonate host rock and indicate fluid equilibrium between carbonate host rocks and hydrothermal brines. The δ 34 S values for sphalerite and galena fall within a narrow range (1 to 10 ‰) with a bulk value of 7.5 ‰, indicating a homogeneous source of sulfur. The δ 34 S values of barite are also relatively homogeneous (22 ‰), with 6 ‰ higher than the δ 34 S of local and regional Triassic evaporites (15 ‰). The latter are believed to be the source of sulfate. Temperature of deposition together with sulfur isotope data indicate that the reduced sulfur in sulfides was derived through thermochemical sulfate reduction of Triassic sulfate via hydrocarbons produced probably from Late Cretaceous source rocks. The 87 Sr/ 86 Sr ratio in the Bou Jaber barite (0.709821 to 0.711408) together with the lead isotope values of Bou Jaber galena ( 206 Pb/ 204 Pb = 18.699 to 18.737; 207 Pb/ 204 Pb = 15.635 to 15.708 and 208 Pb/ 204 Pb = 38.321 to 38.947) show that metals were extracted from homogeneous crustal source(s). The tectonic setting of the Bou Jaber ore deposit, the carbonate nature of the host rocks, the epigenetic style of the mineralization and the mineral associations, together with sulfur and oxygen isotope data and fluid inclusion data show that the Bou Jaber lead-zinc mineralization has the major characteristics of a salt diapir-related Mississippi Valley-type (MVT) deposit with superimposed events of fluorite and of barite deposition. Field relations are consistent with mineral deposition during the Eocene–Miocene Alpine orogeny from multiple hydrothermal events: (1) Zn-Pb sulfides formed by mixing of two fluids: one fluid metal-rich but reduced sulfur-poor and a second fluid reduced sulfur-rich; (2) barite precipitation involved the influx of a meteoric water component that mixed with a barium-rich fluid; and (3) fluorite precipitated from a highly saline fluid with higher temperatures.

Mineralium Deposita↗

Arsenic, Boron, and Fluoride Concentrations in Ground Water in and Near Diabase Intrusions, Newark Basin, Southeastern Pennsylvania

During an investigation in 2000 by the U.S. Environmental Protection Agency (USEPA) of possible contaminant releases from an industrial facility on Congo Road near Gilbertsville in Berks and Montgomery Counties, southeastern Pennsylvania, concentrations of arsenic and fluoride above USEPA drinking-water standards of 10 ?g/L and 4 mg/L, respectively, and of boron above the USEPA health advisory level of 600 ?g/L were measured in ground water in an area along the northwestern edge of the Newark Basin. In 2003, the USEPA requested technical assistance from the U.S. Geological Survey (USGS) to help identify sources of arsenic, boron, and fluoride in the ground water in the Congo Road area, which included possible anthropogenic releases and naturally occurring mineralization in the local bedrock aquifer, and to identify other areas in the Newark Basin of southeastern Pennsylvania with similarly elevated concentrations of these constituents. The USGS reviewed available data and collected additional ground-water samples in the Congo Road area and four similar hydrogeologic settings. The Newark Basin is the largest of the 13 major exposed Mesozoic rift basins that stretch from Nova Scotia to South Carolina. Rocks in the Newark Basin include Triassic through Jurassic-age sedimentary sequences of sandstones and shales that were intruded by diabase. Mineral deposits of hydrothermal origin are associated with alteration zones bordering intrusions of diabase and also occur as strata-bound replacement deposits of copper and zinc in sedimentary rocks. The USGS review of data available in 2003 showed that water from about 10 percent of wells throughout the Newark Basin of southeastern Pennsylvania had concentrations of arsenic greater than the USEPA maximum contaminant level (MCL) of 10 ?g/L; the highest reported arsenic concentration was at about 70 ?g/L. Few data on boron were available, and the highest reported boron concentration in well-water samples was 60 ?g/L in contrast to concentrations over 5,000 ?g/L in the Congo Road area. Although concentrations of fluoride up to 4 mg/L were reported for a few well-water samples collected throughout the Newark Basin, about 90 percent of the samples had concentrations of 0.5 mg/L or less. The USGS sampled 58 wells primarily in 5 areas in the Newark Basin, southeastern Pennsylvania, from February 2004 through April 2005 to identify other possible areas of elevated arsenic, boron, and fluoride and to characterize the geochemical environment associated with elevated concentrations of these constituents. Sampled wells included 12 monitor wells at an industrial facility near Congo Road, 45 private-supply wells in Berks, Montgomery, and Bucks Counties, and 1 private-supply well near Dillsburg, York County, an area where elevated fluoride in ground water had been reported in the adjacent Gettysburg Basin. Wells were sampled in transects from the diabase through the adjacent hornfels and into the unaltered shales of the Brunswick Group. Field measurements were made of pH, temperature, dissolved oxygen concentration, and specific conductance. Samples were analyzed in the laboratory for major ions, nutrients, total organic carbon, dissolved and total concentrations of selected trace elements, and boron isotopic composition. Generally, the ground water from the 46 private-supply wells had relatively neutral to alkaline pH (ranging from 6.1 to 9.1) and moderate concentrations of dissolved oxygen. Most water samples were of the calcium-bicarbonate type. Concentrations of arsenic up to 60 ?g/L, boron up to 3,950 ?g/L, and fluoride up to 0.70 mg/L were measured. Drinking-water standards or health advisories (for constituents that do not have standards established) were exceeded most frequently (about 20 percent of samples) for arsenic and boron and less frequently (6 percent or less of samples) for total iron, manganese, sulfate, nitrate, lead, molybdenum, and strontium. In water from 12 monitor

Scientific Investigations Report↗

Hydrogeologic setting and simulation of groundwater flow near the Canterbury and Leadville Mine Drainage Tunnels, Leadville, Colorado

The Leadville mining district is historically one of the most heavily mined regions in the world producing large quantities of gold, silver, lead, zinc, copper, and manganese since the 1860s. A multidisciplinary investigation was conducted by the U.S. Geological Survey, in cooperation with the Colorado Department of Public Health and Environment, to characterize large-scale groundwater flow in a 13 square-kilometer region encompassing the Canterbury Tunnel and the Leadville Mine Drainage Tunnel near Leadville, Colorado. The primary objective of the investigation was to evaluate whether a substantial hydraulic connection is present between the Canterbury Tunnel and Leadville Mine Drainage Tunnel for current (2008) hydrologic conditions. Altitude in the Leadville area ranges from about 3,018 m (9,900 ft) along the Arkansas River valley to about 4,270 m (14,000 ft) along the Continental Divide east of Leadville, and the high altitude of the area results in a moderate subpolar climate. Winter precipitation as snow was about three times greater than summer precipitation as rain, and in general, both winter and summer precipitation were greatest at higher altitudes. Winter and summer precipitation have increased since 2002 coinciding with the observed water-level rise near the Leadville Mine Drainage Tunnel that began in 2003. The weather patterns and hydrology exhibit strong seasonality with an annual cycle of cold winters with large snowfall, followed by spring snowmelt, runoff, and recharge (high-flow) conditions, and then base-flow (low-flow) conditions in the fall prior to the next winter. Groundwater occurs in the Paleozoic and Precambrian fractured-rock aquifers and in a Quaternary alluvial aquifer along the East Fork Arkansas River, and groundwater levels also exhibit seasonal, although delayed, patterns in response to the annual hydrologic cycle. A three-dimensional digital representation of the extensively faulted bedrock was developed and a geophysical direct-current resistivity field survey was performed to evaluate the geologic structure of the study area. The results show that the Canterbury Tunnel is located in a downthrown structural block that is not in direct physical connection with the Leadville Mine Drainage Tunnel. The presence of this structural discontinuity implies there is no direct groundwater pathway between the tunnels along a laterally continuous bedrock unit. Water-quality results for pH and major-ion concentrations near the Canterbury Tunnel showed that acid mine drainage has not affected groundwater quality. Stable-isotope ratios of hydrogen and oxygen in water indicate that snowmelt is the primary source of groundwater recharge. On the basis of chlorofluorocarbon and tritium concentrations and mixing ratios for groundwater samples, young groundwater (groundwater recharged after 1953) was indicated at well locations upgradient from and in a fault block separate from the Canterbury Tunnel. Samples from sites downgradient from the Canterbury Tunnel were mixtures of young and old (pre-1953) groundwater and likely represent snowmelt recharge mixed with older regional groundwater that discharges from the bedrock units to the Arkansas River valley. Discharge from the Canterbury Tunnel contained the greatest percentage of old (pre-1953) groundwater with a mixture of about 25 percent young water and about 75 percent old water. A calibrated three-dimensional groundwater model representing high-flow conditions was used to evaluate large-scale flow characteristics of the groundwater and to assess whether a substantial hydraulic connection was present between the Canterbury Tunnel and Leadville Mine Drainage Tunnel. As simulated, the faults restrict local flow in many areas, but the fracture-damage zones adjacent to the faults allow groundwater to move along faults. Water-budget results indicate that groundwater flow across the lateral edges of the model controlled the majority of flow in and out of the aquifer (79 percent and 63 percent of the total water budget, respectively). The largest contributions to the water budget were groundwater entering from the upper reaches of the watershed and the hydrologic interaction of the groundwater with the East Fork Arkansas River. Potentiometric surface maps of the simulated model results were generated for depths of 50, 100, and 250 m. The surfaces revealed a positive trend in hydraulic head with land-surface altitude and evidence of increased control on fluid movement by the fault network structure at progressively greater depths in the aquifer. Results of advective particle-tracking simulations indicate that the sets of simulated flow paths for the Canterbury Tunnel and the Leadville Mine Drainage Tunnel were mutually exclusive of one another, which also suggested that no major hydraulic connection was present between the tunnels. Particle-tracking simulations also revealed that although the fault network generally restricted groundwater movement locally, hydrologic conditions were such that groundwater did cross the fault network at many locations. This cross-fault movement indicates that the fault network controls regional groundwater flow to some degree but is not a complete barrier to flow. The cumulative distributions of adjusted age results for the watershed indicate that approximately 30 percent of the flow pathways transmit groundwater that was younger than 68 years old (post-1941) and that about 70 percent of the flow pathways transmit old groundwater. The particle-tracking results are consistent with the apparent ages and mixing ratios developed from the chlorofluorocarbon and tritium results. The model simulations also indicate that approximately 50 percent of the groundwater flowing through the study area was less than 200 years old and about 50 percent of the groundwater flowing through the study area is old water stored in low-permeability geologic units and fault blocks. As a final examination of model response, the conductance parameters of the Canterbury Tunnel and Leadville Mine Drainage Tunnel were manually adjusted from the calibrated values to determine if altering the flow discharge in one tunnel affects the hydraulic behavior in the other tunnel. The examination showed no substantial hydraulic connection. The multidisciplinary investigation yielded an improved understanding of groundwater characteristics near the Canterbury Tunnel and the Leadville Mine Drainage Tunnel. Movement of groundwater between the Canterbury Tunnel and Leadville Mine Drainage Tunnel that was central to this investigation could not be evaluated with strong certainty owing to the structural complexity of the region, study simplifications, and the absence of observation data within the upper sections of the Canterbury Tunnel and between the Canterbury Tunnel and the Leadville Mine Drainage Tunnel. There was, however, collaborative agreement between all of the analyses performed during this investigation that a substantial hydraulic connection did not exist between the Canterbury Tunnel and the Leadville Mine Drainage Tunnel under natural flow conditions near the time of this investigation.

Colorado↗

Identification of metrics to monitor salt marsh integrity on National Wildlife Refuges in relation to conservation and management objectives

Executive Summary Most salt marshes in the US have been degraded by human activities, and threats from physical alterations, surrounding land-use, species invasions, and global climate change persist. Salt marshes are unique and highly productive ecosystems with high intrinsic value to wildlife, and many National Wildlife Refuges (NWRs) have been established in coastal areas to protect large tracts of salt marsh and wetland-dependent species. Various management practices are employed routinely on coastal NWRs to restore and enhance marsh integrity and ensure ecosystem sustainability. Prioritizing NWR salt marshes for application of management actions and choosing among multiple management options requires scientifically-based methods for assessing marsh condition. Monitoring is integral to structured decision-making (SDM), a formal process for decomposing a decision into its essential elements. Within a natural resource context, SDM involves identifying management objectives, alternative management actions, and expected management outcomes. The core of SDM is a set of criteria for measuring system performance and evaluating management responses. Therefore, use of SDM to frame natural resource decisions leads to logical selection of monitoring attributes that are linked explicitly to management needs. We used SDM to guide selection of variables for monitoring the ecological integrity of salt marshes within the National Wildlife Refuge System (NWRS). Our objectives were to identify indicators of salt marsh integrity that are effective across large geographic regions, responsive to a wide range of threats, and feasible to implement within funding and staffing constraints of the NWRS. In April, 2008, we engaged interdisciplinary experts in a week-long rapid prototyping SDM workshop to define the essential elements of salt marsh management decisions on refuges throughout the northeastern, southwestern, and northwestern US, corresponding to respective Regions 5, 2, and 1 of the US Fish and Wildlife Service (FWS). Through this process we identified measurable attributes for monitoring salt marsh ecosystems that are integrated into conservation practice and target management objectives. The following salt marsh attributes were identified through the SDM process either for describing state condition to determine management needs or for evaluating the achievement of management objectives: historical condition and geomorphic setting; ditch density; surrounding land use; ratio of open water area to vegetation area; rate of pesticide application; environmental contaminant concentration; change in marsh surface elevation relative to sea level rise; tidal range and groundwater level; surface topography; salinity; and species composition and abundance of vegetation, invasive species, invertebrates, nekton, and breeding and wintering birds. The identified attributes were too broadly defined to serve as operational monitoring variables. Therefore, we tested specific metrics for quantifying most of these attributes in summers of 2008 and 2009. The first four attributes in the above list can be characterized by office-based analysis of existing GIS data layers. The remaining attributes require field-based methods for assessment. We were forced to exclude a small number of attributes from field tests due to inconsistent data (pesticide application rate, environmental contaminant concentrations) or requirements that exceeded the scope of this project (change in marsh surface elevation; surface topography; benthic invertebrates; wintering birds). We evaluated potential metrics for evaluating all remaining field attributes. In partnership with NWRS biologists, we tested rapid versus intensive metrics for monitoring field attributes (tidal range and groundwater level; marsh surface elevation; salinity; and species composition and abundance of vegetation, invasive species, nekton, and breeding birds) at coastal refuges throughout FWS Region 5. Seven refuges participated in metric testing in 2008: Rachel Carson (ME), Parker River (MA), Wertheim (NY), E. B. Forsythe (NJ), Bombay Hook (DE), Prime Hook (DE), and Eastern Shore of Virginia Complex (VA). These seven and two additional refuges participated in metric testing in 2009: Rhode Island Complex (RI) and Stewart B. McKinney (CT). We based all field metrics on existing protocols for salt marsh assessment. Sampling locations were determined randomly within delineated marsh study units (MSUs) at each refuge. Detailed field methods are provided in appendices to this report. Measurements for individual metrics were averaged across samples within MSUs during each year of sampling. Each year, correlation or regression analysis was conducted on average measurements across MSUs within each attribute set to identify redundant metrics. Statistical redundancy between a pair of metrics within an attribute set (i.e., correlation or regression slopes with p-values < 0.05) was considered justification for eliminating one of the pair from the regional set of monitoring metrics. Decisions regarding metric elimination versus retention were based on feasibility of monitoring, considering such factors as sampling time, resources required, and potential for regional standardization in implementation. The result of these tests is a reduced suite of monitoring metrics that targets NWRS management decisions and is practicable for implementing on a regional scale. Based on these tests, we recommend the following list of metrics for monitoring integrity of NWRS salt marshes (marsh attribute category is in parentheses): (historical condition and geomorphic setting) position of marsh in the landscape, marsh shape, degree of fill and/or fragmentation, degree of tidal flushing, amount of aquatic edge; (ditch density) ranking of ditch density from none to severe; (surrounding land use) relative proportion of agricultural land in a 150-m buffer around the marsh, relative proportion of natural land in a 150-m buffer around the marsh, relative proportion of natural land in a 1-km buffer around the marsh; (ratio of open water area to vegetation area) ratio of open water to emergent herbaceous wetlands within the marsh; (marsh surface elevation) elevation referenced to NAVD88 in a representative area of the marsh; (tidal range and groundwater level) percent of time the marsh surface is flooded during deployment of a continuous water-level monitor at a representative marsh location, mean depth of surface flooding as measured by a continuous water-level monitor at a representative location; (salinity) salinity measured in surface water; (vegetation community) vegetation species richness using the point-intercept method in 100-m diameter survey plots, percent cover of various marsh community types within 100-m diameter survey plots; (invasive species abundance) percent cover of invasive plant species measured using the point-intercept method in 100-m diameter survey plots; (nekton community) nekton density, nekton species richness, length of Fundulus heteroclitus ; (breeding bird community) abundance of Willets counted per point during standard call-broadcast surveys, summed abundance of tidal marsh obligate species (Clapper Rail, Willet, Saltmarsh Sparrow, Seaside Sparrow) counted per point during standard call-broadcast surveys. Metrics describing the historical condition, geomorphic setting, and broad landscape features can be assessed using existing GIS databases. Our results support use of rapid methods to assess the majority of field metrics; only those used to describe the nekton community must be measured using intensive methods (throw traps or ditch nets, dependant on habitat configuration). Implementation of these metrics for quantitative assessment of NWRS salt marsh integrity in FWS Region 5 requires developing sampling designs for each refuge. Additionally, it is important to determine how the monitoring information will be used within a management context. SDM should be used to complete the analysis of salt marsh management decisions. The next steps would involve 1) prioritizing and weighting the management objectives; 2) predicting responses to individual management actions in terms of objectives and metrics; 3) using multiattribute utility theory to convert all measurable attributes to a common utility scale; 4) determining the total management benefit of each action by summing utilities across objectives; and 5) maximizing the total management benefits within cost constraints for each refuge. This process would allow the optimum management decisions for NWRS salt marshes to be selected and implemented based directly on monitoring data and current understanding of marsh responses to management actions. Monitoring the outcome of management actions would then allow new monitoring data to be incorporated into subsequent decisions.

Connecticut, Delaware, Maine, Massachusetts, New J↗

Connectivity of Mojave Desert tortoise populations—Management implications for maintaining a viable recovery network

Executive Summary The historic distribution of Mojave desert tortoises ( Gopherus agassizii ) was relatively continuous across the range, and the importance of tortoise habitat outside of designated tortoise conservation areas (TCAs) to recovery has long been recognized for its contributions to supporting gene flow between TCAs and to minimizing impacts and edge effects within TCAs. However, connectivity of Mojave desert tortoise populations has become a concern because of recent and proposed development of large tracts of desert tortoise habitat that cross, fragment, and surround designated conservation areas. This paper summarizes the underlying concepts and importance of connectivity for Mojave desert tortoise populations by reviewing current information on connectivity and providing information to managers for maintaining or enhancing desert tortoise population connectivity as they consider future proposals for development and management actions. Maintaining an ecological network for the Mojave desert tortoise, with a system of core habitats (TCAs) connected by linkages, is necessary to support demographically viable populations and long-term gene flow within and between TCAs. There are four points for wildlife and land-management agencies to consider when making decisions that could affect connectivity of Mojave desert tortoise populations (for example, in updating actions in resource management plans or amendments that could help maintain or restore functional connectivity in light of the latest information): Management of all desert tortoise habitat for persistence and connectivity . Desert tortoise populations continue to decline within most TCAs, and it is unlikely that trends are better in populations outside protected areas. Fragmentation exacerbates negative population trends by breaking large continuous populations into smaller isolated populations. Connectivity within large populations can enhance resilience to localized disturbances due to rescue by neighboring individuals. In contrast, smaller fragmented populations are resistant to rescue by their isolation and thus could suffer irreversible declines to extirpation from a variety of threats and stochastic events. Enhanced threat reduction to reverse declines within TCAs and to maintain occupied habitat in the surrounding matrix would help reduce the variability in population growth rates and improve the resilience of protected populations even while implementing efforts to improve connectivity. Each TCA has unique strengths and weaknesses regarding its ability to support minimum sustainable populations based on areal extent and its ability to support population increases based on landscape connection with adjacent populations. Considering how proposed projects (inside or outside of TCAs) affect connectivity and the ability of TCAs to support at least 5,000 adult tortoises (the numerical goal for each TCA) could help managers to maintain the resilience of TCAs to population declines. The same project, in an alternative location, could have very different impacts on local and regional populations. For example, within the habitat matrix surrounding TCAs, narrowly delineated corridors may not allow for natural population dynamics if they do not accommodate overlapping home ranges along most of their widths so that tortoises reside, grow, find mates, and produce offspring that can replace older tortoises. In addition, most habitat outside TCAs may receive more surface disturbance than habitat within TCAs. Therefore, managing the entire remaining matrix of desert tortoise habitat for permeability may be better than delineating fixed corridors. These concepts apply, especially given uncertainty about long-term condition of habitat, within and outside of TCAs under a changing climate. Ultimately, questions such as “ What are the critical linkages that need to be protected ?” could be better framed as “ How can we manage the remaining habitat matrix in ways that sustain ecological processes and habitat suitability for special status species ?” Land-management decisions made in the context of the latter question may be more conducive to maintenance of a functional ecological network. Limitations on landscape-level disturbance across habitat managed for the desert tortoise Clearly delineating habitat linkages and differentiating them from non-delineated areas by the uses that are permitted or prohibited within them by specific management guidelines can help achieve functional connectivity. Such guidelines would be most effective if they considered and accounted for all surface disturbances (for example, temporary disturbances such as fiberoptic lines or off-highway vehicle routes, right-of-ways, utility-scale solar development, urbanization) to the extent possible. A weighted framework that varies with the permanence or severity of the disturbance, and can be additive to quantify cumulative effects, could be useful (Xiong, 2020). For example, minor roads can alter tortoise movements independently of other features (Peaden and others, 2017; Hromada and others, 2020), but if the isolated dirt road is accompanied by a powerline that encourages raven predation (Xiong, 2020), then the two features together may be additive. Ignoring minor or temporary disturbance on the landscape could result in a cumulatively large impact that is not explicitly acknowledged (Goble, 2009); therefore, understanding and quantifying all surface disturbance on a given landscape is prudent. In California, the Bureau of Land Management established 0.1–1.0 percent caps on new surface-disturbance for TCAs and mapped linkages that address the issues described in number 1 of this list. Nevada, Utah, and Arizona currently do not have surface-disturbance limits. Limits comparable to those in the Desert Renewable Energy Conservation Plan (DRECP) would be 0.5 percent within TCAs and 1 percent within the linkages modeled by Averill-Murray and others (2013). Limits in some areas of California within the Desert Renewable Energy Conservation Plan, such as Ivanpah Valley, are more restrictive, at 0.1 percent. Continuity across the state line in Nevada could be achieved with comparable limits in the adjacent portion of Ivanpah Valley, as well as the Greater Trout Canyon Translocation Area and the Stump Springs Regional Augmentation Site. These more restrictive limits would help protect remaining habitat in the major interstate connectivity pathway through Ivanpah Valley and focal areas of population augmentation that provide additional population connectivity along the western flank of the Spring Mountains. In a recent study that analyzed 13 years of desert tortoise monitoring data, nearly all desert tortoise observations were at sites in which 5 percent or less of the surrounding landscape within 1 kilometer was disturbed (Carter and others, 2020a). To help maintain tortoise habitability and permeability across all other non-conservation-designated tortoise habitat, all surface disturbance could be limited to less than 5-percent development per square kilometer because the 5-percent threshold for development is the point at which tortoise occupation drops precipitously (Carter and others, 2020a). However, although individual desert tortoises were observed at development levels up to 5 percent, we do not know the fitness or reproductive characteristics of these individuals. This level of development also may not allow for long-term persistence of healthy populations that are of adequate size needed for demographic or functional connectivity; therefore, a conservative interpretation suggests that, ideally, development could be lower. Lower development levels would be particularly useful in areas within the upper 5th percentile of connectivity values modeled by Gray and others (2019). Reducing ancillary threats in places where connectivity is restricted to narrow strips of habitat, for example, narrow mountain passes or vegetated strips between solar development, could enhance the functionality of these vulnerable linkages. In such areas, maintaining multiple, redundant linkages could further enhance overall connectivity. Minimization of mortality from roads and maximization of passage under roads . Roads pose a significant threat to the long-term persistence of local tortoise populations, and roads of high traffic volume lead to severe population declines, which ultimately fragments populations farther away from the roads. Three points (a.–c.) pertain to reducing direct mortality of tortoises on the many paved roads that cross desert tortoise habitat and to maintaining a minimal level of permeability across these roads: Tortoise-exclusion fencing tied into culverts, underpasses, overpasses, or other passages below roads in desert tortoise habitat, would limit vehicular mortality of tortoises and provide opportunities for movement across the roads. Installation of shade structures on the habitat side of fences installed in areas with narrow population-depletion zones would limit overheating of tortoises that may pace the fence. Passages below highways could be maintained or retrofitted to ensure safe tortoise access, for example, by filling eroded drop-offs or modifying erosion-control features such as rip-rap to make them safer and more passable for tortoises. Wildlife management agencies could work with transportation departments to develop construction standards that are consistent with hydrologic/erosion management goals, while also incorporating a design and materials consistent with tortoise survival and passage and make the standards widely available. The process would be most effective if the status of passages was regularly monitored and built into management plans. Healthy tortoise populations along fenced highways could be supported by ensuring that land inside tortoise-exclusion fences is not so degraded that it leads to degradation of tortoise habitat outside the exclusion areas. For example, severe invasive plant infestations inside a highway exclusion could cause an increase of invasive plants outside the exclusion area and degrade habitat; therefore, invasive plants inside road rights of way could be mown or treated with herbicide to limit their spread into adjacent tortoise habitat and minimize the risk of these plants carrying wildfires into adjacent habitat. Adaptation of management based on new information . Future research will continue to build upon and refine models related to desert tortoise population connectivity and develop new ones. New models could consider landscape levels of development and be constructed such that they share common foundations to support future synthesis efforts. If model development was undertaken in partnership with entities that are responsible for management of desert tortoise habitat, it would facilitate incorporation of current and future modeling results into their land management decisions. There are specific topics that may be clarified with further evaluation: The effects of climate change on desert tortoise habitat, distribution, and population connectivity; The effects of large-scale fires, especially within repeatedly burned habitat, on desert tortoise distribution and population connectivity; The ability of solar energy facilities or similar developments to support tortoise movement and presence by leaving washes intact; leaving native vegetation intact whenever possible, or if not possible, mowing the site, allowing vegetation to re-sprout, and managing weeds; and allowing tortoises to occupy the sites; and The design and frequency of underpasses necessary to maintain functional demographic and genetic connectivity across linear features, like highways.

Arizona, California, Nevada↗

Geology and ground-water hydrology of the Mokelumne area, California

The Mokelumne River basin of central California comprises portions of the California Trough and the Sierra Nevada section of the Pacific Mountain system. The California Trough is divisible into four subsections-the Delta tidal plain, the Victor alluvial plain, tlie river flood plains and channels, and the Arroyo Seco dissected pediment. These four subsections comprise the land forms produced by the Mokelumne River and other streams since the Sierra Nevada attained its present height in the Pleistocene epoch. The Victor alluvial plain rises eastward from the Delta plain and abuts on the dissected Arroyo Seco pediment; in the Mokelumne area it is 12 to 16 miles wide and slopes between 5 and 8 feet in a mile. It includes relatively extensive tracts that are intensively cultivated and irrigated with water pumped from wells. The Victor plain has been compounded of overlapping alluvial fans along the western base of the Sierra Nevada. It is prolonged eastward into the pediment by tongues of alluvium along several of the present streams; thus it seems likely that the present stream pattern in the eastern part of the area has been fixed since dissection of the pediment began. Three of the four major streams-the Mokelumne and Cosumnes Rivers and Dry Creek-traverse the Victor plain in trenches which are 15 to 40 feet deep at the heads of their respective alluvial fans but which die out toward the west. The floors of these trenches, the historic flood plains, are from 100 yards to a mile wide. The exceptional major stream, which has not entrenched itself, is the Calaveras River. The Arroyo Seco pediment, which lies east of the Victor plain, was initially at least 8 to 15 miles wide and lay along the western foot of the Sierra Nevada entirely .across the Mokelumne area. Its numerous remnants decline 15 to 35 feet in a mile toward the west. The Sierra Nevada section adjoins and lies east of the California Trough. Its major ridge crests define a volcanic plain whose westward slope is' inferred to have been initially about 90 feet in a mile but is now about 180 feet in a mile, owing to tilting of the Sierra Nevada block in Pleistocene time. In and near the Mokelumne area the Sierra Nevada and California Trough together are roughly coextensive with a single structural unit. The Sierra Nevada constitutes a block that has risen with respect to adjoini;ng valley areas 'by simple rotation or tilting toward the west; it has not been warped or faulted -extensively. It is inferred that this block extends westward beneath the thick alluvial deposits of the trough without material warping or faulting. The oldest rocks of the Mokelumne region are the Carboniferous and Jurassic -rocks that compose the crystalline core of the Sierra Nevada. These are overlain unconformably by sediments of Tertiary age--in upward succession the lone, Valley Springs, Mehrten, and J.Jaguna formations. Of these formations all except the lone are newly discriminated, and type sections are described in the full text. These Tertiary sediments form a great wedge, thinnest along the mountain front to the east, where they have been truncated by erosion. They dip about 2° W. The lone formation (Eocene) consists chiefly of sandstone, clay, and shale; its maximum thickness is 450 feet. The Valley Springs formation (middle? Miocene) overlies the lone formation unconformably. It is composed largely of greenish-gray clay, shale, and sandstone derived from rhyolitic ejectamenta. These rhyolitic deposits are confined to narrow channels in the higher part of the Sierra Nevada, but they spread fanlike over the lower western edge of the mountain block, where they attain a maximum thickness of 525 feet. The Mehrten formation (upper? Miocene and lower Pliocene?) comprises the andesitic rocks that constructed the Sierran volcanic plain. In the Mokelumne area it consists chiefly of sandstone and siltstone but includes, as a minor though conspicuous part of the formation, layers and tongues of resistant breccia or agglomerate, which are presumed to have originated as mud flows. Nonfragmental andesite is not known to occur in the Mokelumne area, although several possible vents occur farther east. In the eastern part of the area the Mehrten formation truncates in turn the Valley Springs and lone formations and the pre-Cretaceous rocks; in the western part the Mehrten formation (andesitic) interfingers with the underlying Valley Springs formation (rhyolitic). Its maximum measured thickness is 400 feet. Few of the irrigation wells are so deep that they can be said with assurance to reach the Mehrten formation. The Laguna formation (Pliocene? and possibly lower Pleistocene) comprises poorly sorted, nonandesitic fluviatile sedimentary that overlie the Mehrten formation. It is inferred to be essentially parallel to and tilted equally with the Mehrten formation and to be about 400 feet thick. The Arroyo Seco gravel (presumably middle Pleistocene) veneers the Arroyo Seco pediment. At its easternmost outcrops the formation is composed of pebbles, cobbles, and boulders in a matrix of brick-red sand and silt; farther west, down the slope of the pediment, it becomes pr9gressively finer. It is inferred that the Arroyo Seco gravel is a coarse fraction of the rock waste that was transported from the Sierra Nevada after the Sierran.block was tilted in Pleistocene time. It is inferred further that the correlative of the Arroyo Seco gravel in the California Trough is a wedge-shaped mass of sediments whose base is the tilted Laguna formation and whose top can be interpolated by projecting a hypothetical surface through the remnants of the pediment. The Victor formation comprises the fluviatile sand, silt, and gravel that built the Victor alluvial plain over the hypothetical equivalent of the Arroyo' Seco gravel along the axis of the California Trough and against the western front of the dissected pediment to the east. The formation is thought to be about 100 feet thick along the western margin of the Mokelumne area, according to an estimate based upon projecting the slope of the Arroyo Seco pediment westward beneath the Victor plain. The Mokelumne area lies on the fertile central plain along the Mokelumne River about the city of Lodi, in northern San Joaquin County, and has been intensively developed for the cultivation of grapes, deciduous fruits, and other crops. Of necessity its great productiveness is maintained by irrigation. Extensive irrigation from wells began about 1907 and has increased steadily until in 1932 about 50,000 acres (80 percent of the area) was watered in that manner. The specific question at issue is the extent to which the supply of ground water and hence the productiveness of the area are dependent upon the water flowing in the Mokelumne River and the extent to which that productiveness may be influenced by regulation of the stream--:in particular, by the substantial regulation of the river that is accomplished by the Pardee Dam of the East Bay Municipal Utility District, which began to function in March 1929. The depth of 1,447 irrigation wells in five townships in the central part of the area (T. 3 N., Rs. 6 and 7 E., and T. 4 N., Rs. 6 to 8 E.) ranges from 20 to 910 feet. About half the wells bottom within a 100-foot zone whose base is 75 feet below the projected Arroyo Seco pediment; essentially that zone constitutes the Victor formation. Only 6 percent of the wells bottom within the next lower 25- foot zone, but the percentage increases sharply for depths still greater; it is inferred that impervious strata are relatively persistent between 75 and 100 feet below the projected pediment and that these are the uppermost part of the Arroyo Seco gravel. Of 580 observation wells known to bottom in the Victor formation, essentially all appear to indicate a regional water-table stage; thus the water is essentially unconfined. On the other hand, nearly all wells so deep that they reach the Arroyo Seco gravel or some underlying formation tap confined water. Near the Mokelumne River the water levels in these deep wells stand below the water table, which is semiperched. In most deep wells remote from the river the water level stands above the water table except during the pumping season. Fluctuations of ground-water levels are ascribed to moving or changing load on the land surface, earthquakes, variation of barometic pressure, ground-water draft by vegetation, infiltration of rain and certain indirect effects of rainfall, infiltration of water applied to the land for irrigation, variation in the discharge of streams, and pumping from wells. In the eastern part of the central district, between Clements and the vicinity of Lockeford, it is inferred that (1) the river and the water in the alluvium of the flood plain are not insulated from the water in the sediments that form the adjacent Victor plain; (2) locally if not generally, however, there are discontinuities in pervious strata along the outer margin of the flood plain, where the water table passes from the alluvium into the enclosing sediments, so that percolation of ground water is impeded materially at that margin; (3) rising river stages set up ground-water waves that store relatively large volumes of water in the alluvium close to the river, whereas falling stages cause much of that stored water to percolate back into the river, weeks and even months lapsing before the ground-water stage becomes steady within the flood plain; and (4) seepage loss from the river into the alluvium tends to be intermittent and to alternate with seepage gain, the rate of loss or gain lagging weeks or months behind the fluctuations of river stage and lagging more for moderate changes at low stage. However, in the succeeding reach downstream as far as Woodbridge, it is inferred that percolation of ground water is not impeded generally along the outer margin of the flood plain and that the river tends to lose almost continuously by seepage rather than intermittently, although the rate of loss fluctuates somewhat in response to changing river stage. The yearly pumpage for irrigation has been as much as 114,600 acre-feet (1928- 29), and there have been as many as 2,500 wells equipped with irrigation pumping plants (1931). Commonly the wells are pumped only in daylight and are idle over week-ends and holidays, also during and after protracted rainstorms in the early part of the season. In a small district near Victor pumping in recent years has begun in January or February, has reached its height in March, and largely has passed by April. In outlying districts general pumping has begun as late as May, reached its height in June or July, and waned by September. Since 1907 the water table appears to have declined steadily in most of the Mokelumne area except along the river. The decline was least in the Woodbridge Irrigation District, where in four typical wells. the average decline from 1907 to 1937 was 3 feet, or 0.15 foot a year. Among 18 shallow wells in the district of most intensive pumping the average recession of the water table from 1907 to 1927 was 11 feet, or 0.55 foot a year; the greatest measured recession was 15 feet, or 0.75 foot a year. From 1927 to 1933 the water table declined 5 feet or more over most of the central pumping district except within 2 miles of the Mokelumne River, and the greatest measured decline was 9 feet. The area of material recession ,extends 4 to 7 miles eastward beyond the central pumping district, whence it is inferred that pumping has drawn gradually on remote ground-water storage. It is inferred that the Mokelumne River ordinarily has been a losing stream between the Mehrten dam site, near Clements, and the Woodbridge Dam, the area that received the percolate having been triangular with its upstream and having included about 5,200 acres of the flood plain and 36,500 acres in outlying districts to the north and to the south. Mean fluctuations of the water table within the area receiving percolate from ihe river are believed to indicate that relatively little water is drawn from outside the area. Accordingly, simple storage methods are competent for a ground-water inventory. It is inferred that the rate of seepage loss from the river depends jointly upon river discharge, stage in the Woodbridge Reservoir, and groundwater pumpage. The foregoing inferences lead to the following conclusions with respect to ground-water replenishment by seepage loss from the river in the intensively cultivated district about Lodi: (1) The annual replenishment has tended to increase for at least two decades, owing to the gradual increase in head between surface water and ground water as ground-water levels have been lowered progressively by pumping; (2) annual replenishment has tended to increase, especially in recent years, owing to gradually prolonged use of the Woodbridge Reservoir, for thereby a relatively large wetted area and great differential head have been maintained for an increasing term; (3) the rate of replenishment tends to be greater under regulation than under the so-called natural regimen, to the extent that regulation has maintained a moderately large wetted area and stage in the river through the later part ·of each pumping season, whi1e the ground-water levels have been lowest. Moreover, for any particular yearly run-off below the Mehrten dam site, the replenishment by seepage would tend to be greater under the regulated regimen to the extent that fluctuations in discharge were suppressed, for the greatest yearly mean stage and mean wetted area would be afforded by constant discharge. -Thus, diverting water out of the Mokelumne River Basin at the Pardee Dam does not necessari1y-entail a diminution in ground-water replenishment by seepage loss along the lower reach of the stream, at least in the replenishment beneath the Victor plain above the gaging station at Woodbridge. Rather. the Pardee Dam affords a means for so regulating the discharge as to effect a maximum ground-water replenishment with-a given run-off in the natural channel. Bodies of ground water perched above the regional water table are common in the Laguna formation, especially in its lower part. Conspicuous bodies occur about 3 miles south of Clay, in a district between 1 mile and 5 miles south of Clements, and along Dry Creek in T. 5 N., Rs. 7 and 8 E. From the relation between the water table and the piezometric surface for water confined in deep aquifers, the area receiving percolate from the Mokelumne River may be divided roughly into (1) a central area, extending not :p1ore than half a mi1e beyond the flood plain, in which the piezometric surface is inferred to have stood below the water table throughout the term of the investigation and hence in which the difference in head has favored the percolation of water from shallow beds into deep beds in all seasons, and (2) an outlying area in which the difference in head likewise favors downward percolation into deep beds during the pumping season but favors upward percolation during the nonpumping season. This outlying area includes about 75 percent of the segment of the Victor plain that receives percolate from the river. From 1927 to 1933 the subartesian head that existed during the nonpumping season in the area remote from the river tended to increase; it is therefore inferred that the relative opportunity for seasonal recharge of the shallow water-bearing beds by underfeeding has likewise tended to increase. On the other hand, the negative differential head in wells near the river also has tended to increase; thus in this central area the opportunity for discharge of water from shallow beds by downward percolation has probably tended to increase. It is believed that ground-water storage within the area near the river is not decreased materially by" discharge westward through deep pervious beds, also that the yearly addition to ground-water storage in the outlying area by deep percolation from a remote easterly source is scant and for all practical purposes is offset by downward percolation along the river.

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