USGS Science⌕ Search

SEARCH · USGS Science

Results for “Literature Review”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 361 records · Page 20Linked to original sources

Bellwether sites for evaluating changes in landslide frequency and magnitude in cryospheric mountainous terrain: A call for systematic, long-term observations to decipher the impact of climate change

Permafrost and glaciers are being degraded by the warming effects of climate change. The impact that this degradation has on slope stability in mountainous terrain is the subject of ongoing research efforts. The relatively new availability of high-resolution (≤ 10 m) imagery with worldwide coverage and short (≤ 30 days) repeat acquisition times, as well as the emerging field of environmental seismology, presents opportunities for making remote, systematic observations of landslides in cryospheric mountainous terrain. I reviewed the literature and evaluated landslide activity in existing imagery to select five ~ 5000-km 2 sites where long-term, systematic observations could take place. The five proposed sites are the northern and eastern flanks of the Northern Patagonia Ice Field, the Western European Alps, the eastern Karakoram Range in the Himalayan Mountains, the Southern Alps of New Zealand, and the Fairweather Range in Southeast Alaska. Systematic observations of landslide occurrence, triggers, size, and travel distance at these sites, especially if coupled with observations from in situ instrumental monitoring, could lead to a better understanding of changes in slope stability induced by climate change. The suggested sites are not meant to be absolute and unalterable. Rather, they are intended as a starting point and discussion starter for new work in this expanding landslide research frontier.

Landslides↗

A conceptual framework for the identification and characterization of lacustrine spawning habitats for native lake charr Salvelinus namaycush

Lake charr Salvelinus namaycush are endemic to the formerly glaciated regions of North America and spawn primarily in lakes, unlike most other Salmoninae. Spawning habitats for lake charr are thought to be characterized by relatively large substrate particle sizes which provide sufficient interstitial spaces for egg incubation, but little is known about the physical processes that create or maintain suitable habitats. We review the literature on lake charr spawning habitat and present a conceptual framework that examines the roles of physical variables in creating the appropriate conditions for egg incubation. A critical underlying assumption of this framework is that lake charr will select spawning habitats that provide suitable hypolentic flows for egg incubation. We suggest that the characterization of lakebed surface roughness, current patterns, substrate particle size, and groundwater flows at multiple spatial scales may yield significant insight into the physical mechanisms supporting lacustrine spawning habitats for lake charr and will be useful in creating predictive models of these habitats. This framework may also apply to other lake-spawning lithophilic fish species.

Environmental Biology of Fishes↗

Life-history habitat matching in invading non-native plant species

We briefly reviewed the literature on habitat matching in invading non-native plant species. Then we hypothesized that the richness and cover of native annual and perennial plant species integrate complex local information of vegetation and soils that would help to predict invasion success by similarly adapted non-native plant species. We tested these ‘life-history habitat matching’ relationships in 603 0.1-ha plots, including 294 plots in Colorado, which were relatively high for the cover of native perennial plant species, and for 309 0.1-ha plots in southern Utah, which were relatively high in the cover of native annual plant species. We found strong positive relationships between the richness and foliar cover for both native and non-native species, whether they were annual or perennial species (0.34 > r 2 < 0.53; P < 0.0001). We also found significant positive relationships between the cover of native annual species at a site and the richness ( r 2 = 0.13; P < 0.0001) and the foliar cover ( r 2 = 0.06; P < 0.0001) of non-native annual species. The proportion of non-native annual species in the flora of a plot also increased significantly with the foliar cover of native annual species. Conversely, the richness and cover of non-native annual species were significantly negatively associated with the foliar cover of native perennial species ( r 2 = 0.05 and 0.06, respectively; P < 0.0001). The cover of non-native annual or perennial species was not significantly correlated with soil texture variables, %N, or %C. We conclude that there may be a high degree of life-history habitat matching by non-native annual species in these study sites. Information on native annual and perennial species richness and cover may help characterize the complex soils, climate, and disturbance environment in which similarly adapted non-native plant species establish and gain foliar cover.

Plant and Soil↗

Latitudinal variation in avian incubation attentiveness and a test of the food limitation hypothesis

Avian incubation attentiveness has important fitness consequences through its influence on the number and quality of hatched young and energetic costs imposed on parents. Nest attentiveness is highly variable across species and geographical regions. We reviewed the literature and found a worldwide pattern that nest attentiveness of passerines is generally lower in south temperate and tropical regions than in north temperate regions. We also conducted a food manipulation experiment to assess the extent to which nest attentiveness may reflect proximate responses versus an evolved behaviour. We used the karoo prinia, Prinia maculosa, in South Africa, which has very low nest attentiveness (???49%) compared with that of many passerine birds. We provided supplemental food during early incubation to experimental females and compared nest attentiveness and on- and off-bout lengths of experimental and paired control females.??Nest attentiveness of females at food-provisioned nests was significantly higher than that of control females (57% versus 49%). Food-supplemented females also spent significantly less time off the nest than did control females, whereas mean on-bout lengths did not differ. However, mean nest attentiveness of food-provisioned females was still substantially below that of other similar bird species worldwide. Food can be an important proximate influence on parental care behaviour, but proximate influences of food do not explain broad latitudinal patterns of attentiveness. ?? 2007 The Association for the Study of Animal Behaviour.

Animal Behaviour↗

Temperature-influenced energetics model for migrating waterfowl

Climate and weather affect avian migration by influencing when and where birds fly, the energy costs and risks of flight, and the ability to sense cues necessary for proper navigation. We review the literature of the physiology of avian migration and the influence of climate, specifically temperature, on avian migration dynamics. We use waterfowl as a model guild because of the ready availability of empirical physiological data and their enormous economic value, but our discussion and expectations are broadly generalizable to migratory birds in general. We detail potential consequences of an increasingly warm climate on avian migration, including the possibility of the cessation of migration by some populations and species. Our intent is to lay the groundwork for including temperature effects on energetic gains and losses of migratory birds with the expected consequences of increasing temperatures into a predictive modeling framework. To this end, we provide a simulation of migration progression exclusively focused on the influence of temperature on the physiological determinants of migration. This simulation produced comparable results to empirically derived and observed values for different migratory factors (e.g., body fat content, flight range, departure date). By merging knowledge from the arenas of avian physiology and migratory theory we have identified a clear need for research and have developed hypotheses for a path forward.

Ecological Modelling↗

Estimating mercury emissions resulting from wildfire in forests of the Western United States

Understanding the emissions of mercury (Hg) from wildfires is important for quantifying the global atmospheric Hg sources. Emissions of Hg from soils resulting from wildfires in the Western United States was estimated for the 2000 to 2013 period, and the potential emission of Hg from forest soils was assessed as a function of forest type and soil-heating. Wildfire released an annual average of 3100 ± 1900 kg-Hg y − 1 for the years spanning 2000–2013 in the 11 states within the study area. This estimate is nearly 5-fold lower than previous estimates for the study region. Lower emission estimates are attributed to an inclusion of fire severity within burn perimeters. Within reported wildfire perimeters, the average distribution of low, moderate, and high severity burns was 52, 29, and 19% of the total area, respectively. Review of literature data suggests that that low severity burning does not result in soil heating, moderate severity fire results in shallow soil heating, and high severity fire results in relatively deep soil heating (< 5 cm). Using this approach, emission factors for high severity burns ranged from 58 to 640 μg-Hg kg-fuel − 1 . In contrast, low severity burns have emission factors that are estimated to be only 18–34 μg-Hg kg-fuel − 1 . In this estimate, wildfire is predicted to release 1–30 g Hg ha − 1 from Western United States forest soils while above ground fuels are projected to contribute an additional 0.9 to 7.8 g Hg ha − 1 . Land cover types with low biomass (desert scrub) are projected to release less than 1 g Hg ha − 1 . Following soil sources, fuel source contributions to total Hg emissions generally followed the order of duff > wood > foliage > litter > branches.

Science of Total Environment↗

Pesticides and pollinators: A socioecological synthesis

The relationship between pesticides and pollinators , while attracting no shortage of attention from scientists, regulators, and the public, has proven resistant to scientific synthesis and fractious in matters of policy and public opinion. This is in part because the issue has been approached in a compartmentalized and intradisciplinary way, such that evaluations of organismal pesticide effects remain largely disjoint from their upstream drivers and downstream consequences. Here, we present a socioecological framework designed to synthesize the pesticide-pollinator system and inform future scholarship and action. Our framework consists of three interlocking domains-pesticide use, pesticide exposure, and pesticide effects–each consisting of causally linked patterns, processes, and states. We elaborate each of these domains and their linkages, reviewing relevant literature and providing empirical case studies. We then propose guidelines for future pesticide-pollinator scholarship and action agenda aimed at strengthening knowledge in neglected domains and integrating knowledge across domains to provide decision support for stakeholders and policymakers. Specifically, we emphasize (1) stakeholder engagement, (2) mechanistic study of pesticide exposure, (3) understanding the propagation of pesticide effects across levels of organization, and (4) full-cost accounting of the externalities of pesticide use and regulation. Addressing these items will require transdisciplinary collaborations within and beyond the scientific community, including the expertise of farmers, agrochemical developers, and policymakers in an extended peer community.

Science of the Total Environment↗

Current state of knowledge on biological effects from contaminants on arctic wildlife and fish

Since the last Arctic Monitoring and Assessment Programme (AMAP) effort to review biological effects of the exposure to organohalogen compounds (OHCs) in Arctic biota, there has been a considerable number of new Arctic effect studies. Here, we provide an update on the state of the knowledge of OHC, and also include mercury, exposure and/or associated effects in key Arctic marine and terrestrial mammal and bird species as well as in fish by reviewing the literature published since the last AMAP assessment in 2010. We aimed at updating the knowledge of how single but also combined health effects are or can be associated to the exposure to single compounds or mixtures of OHCs. We also focussed on assessing both potential individual as well as population health impacts using population-specific exposure data post 2000. We have identified quantifiable effects on vitamin metabolism, immune functioning, thyroid and steroid hormone balances, oxidative stress, tissue pathology, and reproduction. As with the previous assessment, a wealth of documentation is available for biological effects in marine mammals and seabirds, and sentinel species such as the sledge dog and Arctic fox, but information for terrestrial vertebrates and fish remain scarce. While hormones and vitamins are thoroughly studied, oxidative stress, immunotoxic and reproductive effects need further investigation. Depending on the species and population, some OHCs and mercury tissue contaminant burdens post 2000 were observed to be high enough to exceed putative risk threshold levels that have been previously estimated for non-target species or populations outside the Arctic. In this assessment, we made use of risk quotient calculations to summarize the cumulative effects of different OHC classes and mercury for which critical body burdens can be estimated for wildlife across the Arctic. As our ultimate goal is to better predict or estimate the effects of OHCs and mercury in Arctic wildlife at the individual, population and ecosystem level, there remain numerous knowledge gaps on the biological effects of exposure in Arctic biota. These knowledge gaps include the establishment of concentration thresholds for individual compounds as well as for realistic cocktail mixtures that in fact indicate biologically relevant, and not statistically determined, health effects for specific species and subpopulations. Finally, we provide future perspectives on understanding Arctic wildlife health using new in vivo, in vitro, and in silico techniques, and provide case studies on multiple stressors to show that future assessments would benefit from significant efforts to integrate human health, wildlife ecology and retrospective and forecasting aspects into assessing the biological effects of OHC and mercury exposure in Arctic wildlife and fish.

Science of the Total Environment↗

On the relationship between conditional (CAR) and simultaneous (SAR) autoregressive models

We clarify relationships between conditional (CAR) and simultaneous (SAR) autoregressive models. We review the literature on this topic and find that it is mostly incomplete. Our main result is that a SAR model can be written as a unique CAR model, and while a CAR model can be written as a SAR model, it is not unique. In fact, we show how any multivariate Gaussian distribution on a finite set of points with a positive-definite covariance matrix can be written as either a CAR or a SAR model. We illustrate how to obtain any number of SAR covariance matrices from a single CAR covariance matrix by using Givens rotation matrices on a simulated example. We also discuss sparseness in the original CAR construction, and for the resulting SAR weights matrix. For a real example, we use crime data in 49 neighborhoods from Columbus, Ohio, and show that a geostatistical model optimizes the likelihood much better than typical first-order CAR models. We then use the implied weights from the geostatistical model to estimate CAR model parameters that provides the best overall optimization.

Spatial Statistics↗

Improving ecological restoration to curb biotic invasion - A practical guide

Common practices for invasive species control and management include physical, chemical, and biological approaches. The first two approaches have clear limitations and may lead to unintended (negative) consequences, unless carefully planned and implemented. For example, physical removal rarely completely eradicates the targeted invasive species and can cause disturbances that facilitate new invasions by nonnative species from nearby habitats. Chemical treatments can harm native, and especially rare, species through unanticipated side effects. Biological methods may be classified as biocontrol and the ecological approach. Similar to physical and chemical methods, biocontrol also has limitations and sometimes leads to unintended consequences. Therefore, a relatively safer and more practical choice may be the ecological approach, which has two major components: (1) restoration of native species and (2) biomass manipulation of the restored community, such as selective grazing or prescribed burning (to achieve and maintain viable population sizes). Restoration requires well-planned and implemented planting designs that consider alpha-, beta-, and gamma-diversity and the abundance of native and invasive component species at local, landscape, and regional levels. Given the extensive destruction or degradation of natural habitats around the world, restoration could be most effective for enhancing ecosystem resilience and resistance to biotic invasions. At the same time, ecosystems in human-dominated landscapes, especially those newly restored, require close monitoring and careful intervention (e.g., through biomass manipulation), especially when successional trajectories are not moving as intended. Biomass management frequently uses prescribed burning, grazing, harvesting, and thinning to maintain overall ecosystem health and sustainability. Thus, the resulting optimal, balanced, and relatively stable ecological conditions could more effectively limit the spread and establishment of invasive species. Here we review the literature (especially within the last decade) on ecological approaches that involve biodiversity, biomass, and productivity, three key community/ecosystem variables that reciprocally influence one another. We focus on the common and most feasible ecological practices that can aid in resisting new invasions and/or suppressing the dominance of existing invasive species. We contend that, because of the strong influences from neighboring areas (i.e., as exotic species pools), local restoration and management efforts in the future need to consider the regional context and projected climate changes.

Invasive Plant Science and Management↗

Open water dreissenid mussel control projects: Lessons learned from a retrospective analysis

Dreissenid mussels are one of the most problematic aquatic invasive species (AIS) in North America, causing substantial ecological and economic effects. To date, dreissenid mussel control efforts in open water have included physical, biological, and chemical methods. The feasibility of successful dreissenid mussel management or eradication in lakes is relatively undocumented in the freshwater management literature. This review presents information on 33 open water dreissenid mussel control projects in 23 North America lakes. We reviewed data from past dreissenid mussel control projects and identified patterns and knowledge gaps to help inform adaptive management strategies. The three key lessons learned include (1) pre- and post-treatment survey methods that are designed to meet management objectives are beneficial, e.g., by sampling for all life stages and taking into account that no survey method is completely comprehensive; (2) defining the treatment area—particularly ensuring it is sufficiently large to capture all life stages present—is critical to meeting management objectives; and (3) control projects provide an opportunity to collect water chemistry, effects on non-target organisms, and other efficacy-related data that can inform safe and effective adaptive management.

Scientific Reports↗

Factors affecting disaster preparedness, response, and recovery using the community capitals framework

Disaster research often focuses on how and why communities are affected by a discrete extreme event. We used the community capitals framework to understand how community characteristics influence their preparedness, response to, and recovery from successive or multiple disasters using the 1964 Good Friday Earthquake and the 1989 Exxon Valdez Oil Spill as case studies. This study assesses community response to these disasters by reviewing published literature on impacts to create profiles for six communities and by identifying community capitals before and during these disasters, and throughout the long-term recovery. While the presence of rich natural capitals commonly contributed resources to pre-disaster planning and long-term recovery, restriction of resource access immediately following the disasters was detrimental to many communities. Communities with strong political, social, and financial capitals tended to fare better immediately following disasters, enabling longer-term processes of transformation or recovery. However, in some communities the oil spill undermined these capitals more than the earthquake and resulting tsunami. In understanding how use and reliance on community capitals can lead to varied recovery success from different kinds of disasters, these findings can help coastal managers and planners prepare for future disasters.

Alaska↗

Effects of water level alteration on carbon cycling in peatlands

Globally, peatlands play an important role in the carbon (C) cycle. High water level is a key factor in maintaining C storage in peatlands, but water levels are vulnerable to climate change and anthropogenic disturbance. This review examines literature related to the effects of water level alteration on C cycling in peatlands to summarize new ideas and uncertainties emerging in this field. Peatland ecosystems maintain their function by altering plant community structure to adapt to changing water levels. Regarding primary production, woody plants are more productive in unflooded, well-aerated conditions, while Sphagnum mosses are more productive in wetter conditions. The responses of sedges to water level alteration are species-specific. While peat decomposition is faster in unflooded, well aerated conditions, increased plant production may counteract the C loss induced by increased ecosystem respiration (ER) for a period of time. In contrast, rising water table maintains anaerobic conditions and enhances the role of the peatland as a C sink. Nevertheless, changes in DOC flux during water level fluctuation is complicated and depends on the interactions of flooding with environment. Notably, vegetation also plays a role in C flux but particular species vary in their ability to sequester and transport C. Bog ecosystems have a greater resilience to water level alteration than fens, due to differences in biogeochemical responses to hydrology. The full understanding of the role of peatlands in global C cycling deserves much more study due to uncertainties of vegetation feedbacks, peat–water interactions, microbial mediation of vegetation, wildfire, and functional responses after hydrologic restoration.

Ecosystem Health and Sustainability↗

The importance of context dependency for understanding the effects of low flow events on fish

The natural hydrology of streams and rivers has been extensively altered by dam construction, water diversion, and climate change. An increased frequency of low-flow events will affect fish by changing habitat availability, resource availability, and reproductive cues. I reviewed the literature to characterize the approaches taken to assess low-flow events and fish, the main effects of low-flow events on fish, and the associated mechanistic drivers. Most studies are focused on temperate streams and are comparative in nature. Decreased stream flow is associated with decreased survival, growth, and abundance of fish populations and shifts in community composition, but effects are variable. This variability in effects is probably caused by context dependence. I propose 3 main sources of context dependence that drive the variation in fish responses to low-flow events: attributes of the low-flow event, attributes of the habitat, and attributes of the fish. Awareness of these sources of context dependence can help managers interpret and explain data, predict vulnerability of fish communities, and prioritize appropriate management actions.

Freshwater Science↗

A systematic review of laboratory investigations into the pathogenesis of avian influenza viruses in wild avifauna of North America

The lack of consolidated information regarding the response of wild bird species to infection with avian influenza virus (AIV) is a challenge to both conservation managers and researchers alike, with related sectors also impacted, such as public health and commercial poultry. Using two independent searches, we reviewed published literature for studies describing wild bird species experimentally infected with avian influenza to assess host species’ relative susceptibility to AIVs. Additionally, we summarize broad-scale parameters for elements such as shedding duration and minimum infectious dose that can be used in transmission modelling efforts. Our synthesis shows that waterfowl (i.e. Anatidae) compose the vast majority of published AIV pathobiology studies, whereas gulls and passerines are less represented in research despite evidence that they also are susceptible and contribute to highly pathogenic avian influenza disease dynamics. This study represents the first comprehensive effort to compile available literature regarding the pathobiology of AIVs in all wild birds in over a decade. This database can now serve as a tool to all researchers, providing generalized estimates of pathobiology parameters for a variety of wild avian families and an opportunity to critically examine and assess what is known and identify where further insight is needed.

Proceeding of the Royal Society B↗

Taming wildlife disease: bridging the gap between science and management

1.Parasites and pathogens of wildlife can threaten biodiversity, infect humans and domestic animals, and cause significant economic losses, providing incentives to manage wildlife diseases. Recent insights from disease ecology have helped transform our understanding of infectious disease dynamics and yielded new strategies to better manage wildlife diseases. Simultaneously, wildlife disease management (WDM) presents opportunities for large-scale empirical tests of disease ecology theory in diverse natural systems. 2.To assess whether the potential complementarity between WDM and disease ecology theory has been realized, we evaluate the extent to which specific concepts in disease ecology theory have been explicitly applied in peer-reviewed WDM literature. 3.While only half of WDM articles published in the past decade incorporated disease ecology theory, theory has been incorporated with increasing frequency over the past 40 years. Contrary to expectations, articles authored by academics were no more likely to apply disease ecology theory, but articles that explain unsuccessful management often do so in terms of theory. 4.Some theoretical concepts such as density-dependent transmission have been commonly applied, whereas emerging concepts such as pathogen evolutionary responses to management, biodiversity–disease relationships and within-host parasite interactions have not yet been fully integrated as management considerations. 5.Synthesis and applications. Theory-based disease management can meet the needs of both academics and managers by testing disease ecology theory and improving disease interventions. Theoretical concepts that have received limited attention to date in wildlife disease management could provide a basis for improving management and advancing disease ecology in the future.

Journal of Applied Ecology↗

Biota connect aquatic habitats throughout freshwater ecosystem mosaics

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Journal of the American Water Resources Associatio↗

Applying assessments of adaptive capacity to inform natural-resource management in a changing climate

Adaptive capacity (AC)—the ability of a species to cope with or accommodate climate change—is a critical determinant of species vulnerability. Using information on species’ AC in conservation planning is key to ensuring successful outcomes. We identified connections between a list of species’ attributes (e.g., traits, population metrics, and behaviors) that were recently proposed for assessing species’ AC and management actions that may enhance AC for species at risk of extinction. Management actions were identified based on evidence from the literature, a review of actions used in other climate adaptation guidance, and our collective experience in diverse fields of global-change ecology and climate adaptation. Selected management actions support the general AC pathways of persist in place or shift in space, in response to contemporary climate change. Some actions, such as genetic manipulations, can be used to directly alter the ability of species to cope with climate change, whereas other actions can indirectly enhance AC by addressing ecological or anthropogenic constraints on the expression of a species’ innate abilities to adapt. Ours is the first synthesis of potential management actions directly linked to AC. Focusing on AC attributes helps improve understanding of how and why aspects of climate are affecting organisms, as well as the mechanisms by which management interventions affect a species’ AC and climate change vulnerability. Adaptive-capacity-informed climate adaptation is needed to build connections among the causes of vulnerability, AC, and proposed management actions that can facilitate AC and reduce vulnerability in support of evolving conservation paradigms.

Conservation Biology↗