USGS Science⌕ Search

SEARCH · USGS Science

Results for “Life”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 361 records · Page 20Linked to original sources

The life and scientific contributions of Lyman J. Briggs

Lyman J. Briggs (1874–1963), an early twentieth century physicist at the U.S. Department of Agriculture (USDA), made many significant contributions to our understanding of soil-water and plant-water interactions. He began his career at the Bureau of Soils (BOS) in 1896. At age 23, Briggs published (1897) a description of the roles of surface tension and gravity in determining the state of static soil moisture. Concepts he presented remain central to this subject more than 100 yr later. With J.W. McLane, Briggs developed the “moisture equivalent” concept (a precursor to the idea of field capacity) and a centrifuge apparatus for measuring it. Briggs left the BOS at the end of 1905, under pressure from Milton Whitney, and moved to the Bureau of Plant Industry. Briggs' multi-state experiments with H.L. Shantz on water-use efficiencies showed that in a climate like that of the Great Plains, plants use water more productively in the cooler north than in the warmer south. In 1920, he moved from the USDA to the National Bureau of Standards (NBS), rising to Director in 1933. Among his other contributions to the American scientific community was his leadership, beginning in 1939, of a top secret committee that evolved into the Manhattan Project to develop an atomic bomb during World War II. A life-long baseball fan, Briggs at age 84, studied the speed, spin, and deflection of the curve ball, aided by manager Cookie Lavagetto and the pitching staff of the Washington Senators; he published these findings in a paper in the American Journal of Physics in 1959.

Soil Science Society of America Journal↗

Early life history and survival of natural subyearling fall chinook salmon in the Snake and Clearwater rivers in 1995

Snake River fall chinook salmon Oncorhynchustshawytscha have declined in abundance the last three decades and now managers are seeking methods to restore the population, Estimates of adult fish returning to the Snake River prior to 1957 number in the tens of thousands (Irving and Bjornn 1981), compared to a range of about 300-750 for 1991-1995 (Lavoy 1995). As a result, Snake River fall chinook salmon were listed as threatened under the Endangered Species Act (USFWS 1988) in 1992 (NMFS 1992) and the Snake and Clearwater rivers were identified as critical habitat (NMFS 1995). Resource managers are attempting to recover the population of Snake River fall chinook salmon, but the fish are restricted to a small part of historical production areas. The objectives of this segment of our study were to (1) describe the early life history characteristics of naturally produced subyearling fall chinook salmon in the Snake and Clearwater rivers, and (2) estimate survival for juvenile fall chinook salmon emigrating from the Snake and Clearwater rivers to the tail race of Lower Granite Dam.

Idaho, Oregon, Washington↗

Encephalization quotients and life-history traits in the Sirenia

Relative brain size in the Sirenia is unusually small. Encephalization quotients are 0.27 for Florida manatees ( Trichechus manatus ) and 0.38 for dugongs ( Dugong dugon ). Estimates for Steller's sea cow ( Hydrodamalis gigas ) range from 0.12 to 0.19. These values are among the lowest known for Recent mammals, and seemingly have changed little since the Eocene. A body plan specialized for the aquatic environment does not account for low encephalization quotients; values are substantially less than predicted based on cetacean or pinniped allometry. Life-history, ecological, and behavioral traits of the Sirenia are typical of relatively large-brained species. Low quality food and a low metabolic rate, however, are characteristic of the Sirenia and other small-brained mammals. Acting through prolonged postnatal growth, selection also likely favored large body size in the Sirenia without a correlated increase in brain size.

Journal of Mammalogy↗

Life history attributes of the rare mayfly Siphlonisca aerodromia Needham (Ephemeroptera:Siphlonuridae)

Over a 3-y period, we examined the biology of late-instar nymphs, adults, and eggs of the rate predaceous mayfly S. aerodromia at Tomah Stream, Maine, to identify life history attributes associated with the mayfly's movements between the stream channel and the bordering floodplain. Eggs were deposited in the stream channel in June and hatched in November and December. Embryonic development occurred in 47-92% of eggs from unmated females. With rising water levels following snowmelt in March or April, nymphs moved from channel to floodplain, where most nymphal growth and development took place. Sex ratios of nymphs in the floodplain were female biased (1 M:1.4 F in 1991 and 1 M:2.1 F in 1992). Nymphs molted to the final instar earlier in 1991 than in 1992 and male nymphs molted to the final instar before female nymphs in 1991 but not 1992. Time in the final instar decreased as the season advanced. Seasonal emergence was protandrous and lasted 10-11 d during late May and early June; timing of seasonal emergence in 1991, 1992, and 1993 was related to maximum air temperatures and persistence of standing water in the floodplain during May. Emergence of subimagos was female biased in 1991, but male biased in 1992. Diel emergence was from 0700 to 1700 h (EST) and occurred only when water temperature was >11°C.

Journal of the North American Benthological Societ↗

Environmental influence on life-history traits: Growth, survival, and fecundity in Black Brant ( Branta bernicla )

We studied relationships between body size of female Black Brant goslings ( Branta bernicla nigricans ) late in their growth period and first year survival, eventual adult body size, breeding propensity, and size and volume of clutches they eventually produced to examine the relationship between growth and fitness in this population. We indexed body size by calculating PC1 scores based on either culmen and tarsus, or culmen, tarsus, and mass. Gosling (PC scores based on culmen and tarsus) size was positively correlated with resighting rate (P = 0.005), indicating that larger goslings survived at a higher rate than did smaller goslings. Gosling size was correlated with adult size of the same individuals (P = 0.0004). Larger goslings were more likely to breed as 2- or 3-yr-olds than were medium or small goslings (P = 0.008). Larger adult brant laid more eggs (P = 0.03) and produced clutches with greater total volume (P = 0.03) than did smaller brant. Given the important role of foraging environment in growth of goslings, these data suggest an important role of early environment in determining life-history traits.

Alaska↗

The influence of life history trade-offs and the size of the incubation gravels on egg size variation in sockeye salmon Onchorhynchus nerka

Egg size is a critical life history trait, reflecting female investment and affecting off- spring fitness. We investigated several factors which may influence variation in egg weight for sockeye salmon (Oncorhynchus nerka). Comparisons were based on col- lections from 18 Alaskan populations, among which adult migration distance and ju- venile rearing habitat were similar but the size composition of incubation gravels was different. Among populations, most of the variation in egg weight could be explained by a positive correlation with different measures of the size composition of incubation gravels (Pearson's r = 0.45-0.91). In contrast, egg weight was poorly correlated with female body length and with female snout length, a morphological feature used during intra-sexual competition. Within each of the Alaskan populations, however, egg weight and snout length were positively correlated with female body length and hence with each other. A positive association between snout length and egg weight was still evident even after the effects of covariance with body size were removed using resid- uals analysis: for all of the fish pooled and within 6 of the 16 populations. A signifi- cant relationship was not detected in the other populations but the trend was neverthe- less positive in 8 of the other 10. Examination of reproductive traits (gonad weight, egg weight, egg number, snout length and hump size) within another population iden- tified a trade-off between egg weight and egg number for females of a given body length. In contrast, positive correlations between reproductive traits were more com- mon, suggesting that energy-rich individuals produce large eggs and large secondary sexual characteristics rather than sacrificing one for the other.

Oikos↗

A data management life-cycle

Documented, reliable, and accessible data and information are essential building blocks supporting scientific research and applications that enhance society's knowledge base (fig. 1). The U.S. Geological Survey (USGS), a leading provider of science data, information, and knowledge, is uniquely positioned to integrate science and natural resource information to address societal needs. The USGS Central Energy Resources Team (USGS-CERT) provides critical information and knowledge on the quantity, quality, and distribution of the Nation's and the world's oil, gas, and coal resources. By using a life-cycle model, the USGS-CERT Data Management Project is developing an integrated data management system to (1) promote access to energy data and information, (2) increase data documentation, and (3) streamline product delivery to the public, scientists, and decision makers. The project incorporates web-based technology, data cataloging systems, data processing routines, and metadata documentation tools to improve data access, enhance data consistency, and increase office efficiency

Fact Sheet↗

Southwest Caves Reveal New Forms of Life

Caves in northern Arizona and western New Mexico are being researched and inventoried by scientists with the U.S. Geological Survey and cooperating agencies. Southwestern caves have been little studied, and scientists are now finding that these lightless and nutrient-poor natural systems are home to life forms found nowhere else on Earth. This research has identified unique communities of arthropods (insects, arachnids, and crustaceans) that include 3 new genera, or groups of species, and at least 15 new species - some only known to exist in a single cave. This exciting research is yielding information that will be used by resource managers to better understand and protect fragile and important Southwestern cave ecosystems.

Fact Sheet↗

The effects of Glen Canyon Dam operations on early life stages of rainbow trout in the Colorado River

The Lees Ferry reach of the Colorado River-a 16-mile segment from Glen Canyon Dam to the confluence with the Paria River-supports an important recreational rainbow trout (Oncorhynchus mykiss) fishery. In Grand Canyon, nonnative rainbow trout prey on and compete for habitat and food with native fish, such as the endangered humpback chub (Gila cypha). Experimental flow fluctuations from the dam during winter and spring 2003-5 dewatered and killed a high proportion of rainbow trout eggs in gravel spawning bars, but this mortality had no measurable effect on the abundance of juvenile fish. Flow fluctuations during summer months reduced growth of juvenile trout relative to steadier flows. A high-flow experiment in March 2008 increased both trout survival rates for early life stages and fish abundance. These findings demonstrate that Glen Canyon Dam operations directly affect the trout population in the Lees Ferry reach and could be used to regulate nonnative fish abundance to limit potential negative effects of trout on native fish in Grand Canyon.

Fact Sheet↗

The life cycle of a mineral deposit: a teacher's guide for hands-on mineral education activities

This teacher's guide defines what a mineral deposit is and how a mineral deposit is identified and measured, how the mineral resources are extracted, and how the mining site is reclaimed; how minerals and mineral resources are processed; and how we use mineral resources in our every day lives. Included are 10 activitybased learning exercises that educate students on basic geologic concepts; the processes of finding, identifying, and extracting the resources from a mineral deposit; and the uses of minerals. The guide is intended for K through 12 Earth science teachers and students and is designed to meet the National Science Content Standards as defined by the National Research Council (1996). To assist in the understanding of some of the geology and mineral terms, see the Glossary (appendix 1) and Minerals and Their Uses (appendix 2). The process of finding or exploring for a mineral deposit, extracting or mining the resource, recovering the resource, also known as beneficiation, and reclaiming the land mined can be described as the “life cycle” of a mineral deposit. The complete process is time consuming and expensive, requiring the use of modern technology and equipment, and may take many years to complete. Sometimes one entity or company completes the entire process from discovery to reclamation, but often it requires multiple groups with specialized experience working together. Mineral deposits are the source of many important commodities, such as copper and gold, used by our society, but it is important to realize that mineral deposits are a nonrenewable resource. Once mined, they are exhausted, and another source must be found. New mineral deposits are being continuously created by the Earth but may take millions of years to form. Mineral deposits differ from renewable resources, such as agricultural and timber products, which may be replenished within a few months to several years.

General Information Product↗

Theoretical life history responses of juvenile Oncorhynchus mykiss to changes in food availability using a dynamic state-dependent approach

Marine subsidies can play an important role in the growth, survival, and migratory behavior of rearing juvenile salmonids. Availability of high-energy, marine-derived food sources during critical decision windows may influence the timing of emigration or the decision to forego emigration completely and remain in the freshwater environment. Increasing growth and growth rate during these decision windows may result in an altered juvenile population structure, which will ultimately affect the adult population age-structure. We used a state dependent model to understand how the juvenile Oncorhynchus mykiss population structure may respond to increased availability of salmon eggs in their diet during critical decision windows. Our models predicted an increase in smolt production until coho salmon eggs comprised more than 50 percent of juvenile O. mykiss diet at the peak of the spawning run. At higher-than intermediate levels of egg consumption, smolt production decreased owing to increasing numbers of fish adopting a resident life-history strategy. Additionally, greater growth rates decreased the number of age-3 smolts and increased the number of age-2 smolts. Increased growth rates with higher egg consumption also decreased the age at which fish adopted the resident pathway. Our models suggest that the introduction of a high-energy food source during critical periods of the year could be sufficient to increase smolt production.

Open-File Report↗

Skagit River coho salmon life history model—Users’ guide

Natural resource management is conducted in the context of multiple anthropogenic stressors and is further challenged owing to changing climate. Experiments to determine the effects of climate change on complex ecological systems are nearly impossible. However, using a simulation model to synthesize current understanding of key ecological processes through the life cycle of a fish population can provide a platform for exploring potential effects of and management responses to changing conditions. Potential climate-change scenarios can be imposed, responses can be observed, and the effectiveness of potential actions can be evaluated. This approach is limited owing to future conditions likely deviating in range and timing from conditions used to create the model so that the model is expected to become obsolete. In the meantime, however, the modeling process explicitly states assumptions, clarifies information gaps, and provides a means to better understand which relationships are robust and which are vulnerable to changing climate by observing whether and why model output diverges from actual observations through time. The purpose of the model described herein is to provide such a decision-support tool regarding coho ( Oncorhynchus kisutch ) salmon for the Sauk-Suiattle Indian Tribe of Washington State. The Skagit coho salmon model is implemented in a system dynamics format and has three primary stocks—(1) predicted smolts, (2) realized smolts, and (3) escapement. “Predicted smolts” are the number of smolts expected based on the number of spawners in any year and the Ricker production curve. Pink salmon ( Oncorhynchus gorbuscha ) return to the Skagit River in odd years, and when they overlap with juvenile rearing coho salmon, coho smolt production is substantially higher than in non-pink years. Therefore, the model uses alternative Ricker equations to predict smolts depending on whether their juvenile year was a pink or non-pink year. The stock “realized smolts” is calculated based on the expected effect of streamflow conditions to alter the productivity predicted by the Ricker curve. Adverse conditions include scouring flow events that occur when redds are present; high-flow events during winter on juveniles, which can cause fish displacement and adverse water turbidity; and extremely low flows in summer. The stock “escapement” represents the fish remaining after accounting for ocean mortality and harvest. Ocean mortality has been linked with indices of ocean conditions, which are related to ocean biological productivity. Ocean survival also may have a density-dependent component such that lower survival is associated with higher numbers of smolts. The model allows the user to change certain model parameters and inputs, and choose among alternative predictors for certain modeled relations.

Washington↗

Life-history model for sockeye salmon (Oncorhynchus nerka) at Lake Ozette, northwestern Washington—Users' guide

Salmon populations spawning in the Lake Ozette watershed of northwestern Washington were once sufficiently abundant to support traditional Tribal fisheries, and were later harvested by settlers. However, in 1974 and 1975, the sockeye salmon ( Oncorhynchus nerka ) harvest decreased to 0 from a high of more than 17,500 in 1949, thus stimulating research into the causes of decrease, which resulted in eventual listing of the population as threatened under the Endangered Species Act in 1999. The listing status was upheld in 2005 and 2014 following 5-year reviews. Meanwhile, research results were compiled in a limiting factors analysis (LFA) and a recovery plan was developed. Although there has been some improvement in sockeye abundance since listing, the numbers remain too low to allow harvest and it is not yet clear which of the many potential limiting factors are most consequential. As part of the LFA process, a population model was developed to determine values of life-history parameters that would enable the population to survive for 100 years. The model was based on the best available data, but data are limited for the Lake Ozette system. Results informed the qualitative assessment of the importance of limiting factors used to develop the recovery plan for Lake Ozette sockeye. The model was built in Microsoft Excel ® and is difficult to use. The purpose of the model described herein is to synthesize the results of the LFA in a form that can be manipulated by resource managers and the public to create scenarios, test hypotheses, and observe sensitivities of results to changes in parameters. The goal is to provide a tool that enables research, monitoring and management to be focused on the most impactful elements and processes, including identifying the information gaps that are most critical to fill.

Washington↗

Amphibian chytrid prevalence on boreal toads in SE Alaska and NW British Columbia: Tests of habitat, life stages, and temporal trends

Tracking and understanding variation in pathogens such as Batrachochytrium dendrobatidis ([Bd]), which causes amphibian chytridiomycosis and has caused population declines globally, is a priority for many land managers. However, there has been relatively little sampling of amphibian communities at high latitudes. We used skin swabs collected during 2005–2017 from boreal toads (Anaxyrus boreas; N = 248), in southeast Alaska (USA; primarily in Klondike Gold Rush National Historical Park [KLGO]) and northwest British Columbia (Canada) to determine how Bd prevalence varied across life stages, habitat characteristics, local species richness, and time. Across all years, Bd prevalence peaked in June and was >3 times greater for adult toads (37.5%) vs. juveniles and metamorphs (11.2%). Bd prevalence for toads in the KLGO area, where other amphibian species are rare or absent, was highest from river habitats (55.0%), followed by human-modified upland wetlands (32.3%) and natural upland wetlands (12.7%) — the same rank-order these habitats are used for toad breeding. No Columbia spotted frogs (N = 12) or wood frogs (N = 2) from the study area tested Bd-positive, although all were from an area of low host density where Bd has not been detected. Prevalence of Bd on toads in the KLGO area decreased during 2005–2015. This trend from a largely single-species system may be encouraging or concerning, depending on how Bd is affecting vital rates, and emphasizes the need to understand effects of pathogens before translating disease prevalence into management actions.

Southeastern Alaska, Northwestern British Columbia↗

Moose habitat selection and fitness consequences during two critical winter tick life stages in Vermont, United States

The moose ( Alces alces ) is a charismatic species in decline across much of their southern distribution in North America. In the northeastern United States, much of the reduction has been attributed to winter tick ( Dermacentor albipictus ) infestations. Winter ticks are fairly immobile throughout all life stages, and therefore their distribution patterns at any given time are shaped largely by the occurrence of moose across the landscape during the peak of two critical time periods: fall questing (when ticks latch onto moose) and spring drop-off (when engorged female ticks detach from moose). We used recent land cover and lidar data within a dynamic occupancy modeling framework to estimate first-order habitat selection (use vs. non-use) of female moose ( n = 74) during the tick questing and drop-off periods. Patch extinction and colonization rates between the fall questing and spring drop-off periods were strongly influenced by habitat and elevation, but these effects were diminished during the fall questing period when moose were more active across the landscape. From the fall questing period to the spring drop-off period, patches where colonization was high and extinction was low had higher proportions of young (shrub/forage) mixed forest at higher elevations. Further, we evaluated the fitness consequences of habitat selection by adult females during the fall questing period, when females and their calves acquire ticks. We compared Resource Selection Functions (RSF) for five females that successfully reared a calf to age 1 with five females whose calves perished due to ticks. Adult female moose whose offspring perished selected habitats in the fall that spatially coincided with areas of high occupancy probability during the spring tick drop-off period. In contrast, adult female moose whose offspring survived selected areas where the probability of occupancy during the spring drop-off was low; at present, natural selection may favor female adults who do not select the same habitats in fall as in spring. Our model coefficients and mapped results define “hotspots” that are likely encouraging the deleterious effects of the tick-moose cycle. These findings fill knowledge gaps about moose habitat selection that may improve the effectiveness of management aimed at reversing declining population trends.

Vermont↗

Establishing the foundation for the global observing system for marine life

Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data management. Global coordination also requires identification of gaps in spatial and ecosystem coverage, and how these gaps correspond to management priorities and information needs. We undertook such an assessment by conducting an audit and gap analysis from global databases and structured surveys of experts. Of 371 survey respondents, 203 active, long-term (>5 years) observing programs systematically sampled marine life. These programs spanned about 7% of the ocean surface area, mostly concentrated in coastal regions of the United States, Canada, Europe, and Australia. Seagrasses, mangroves, hard corals, and macroalgae were sampled in 6% of the entire global coastal zone. Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable. Our assessment indicates that the global observing system is largely uncoordinated which results in a failure to deliver critical information required for informed decision-making such as, status and trends, for the conservation and sustainability of marine ecosystems and provision of ecosystem services. Based on our study, we suggest four key steps that can increase the sustainability, connectivity and spatial coverage of biological Essential Ocean Variables in the global ocean: (1) sustaining existing observing programs and encouraging coordination among these; (2) continuing to strive for data strategies that follow FAIR principles (findable, accessible, interoperable, and reusable); (3) utilizing existing ocean observing platforms and enhancing support to expand observing along coasts of developing countries, in deep ocean basins, and near the poles; and (4) targeting capacity building efforts. Following these suggestions could help create a coordinated marine biodiversity observing system enabling ecological forecasting and better planning for a sustainable use of ocean resources.

Frontiers in Marine Science↗

OBIS-USA: a data-sharing legacy of the census of marine life

The United States Geological Survey's Biological Informatics Program hosts OBIS-USA, the US node of the Ocean Biogeographic Information System (OBIS). OBIS-USA gathers, coordinates, applies standard formats to, and makeswidely available data on biological collections in marine waters of the United States and other areas where US investigators have collected data and, in some instances, specimens. OBIS-USA delivers its data to OBIS international, which then delivers its data to the Global Biodiversity Information Facility (GBIF) and other Web portals for marine biodiversity data. OBIS-USA currently has 145 data sets from 36 participants, representing over 6.5 million occurrence records of over 83,000 taxa from more than 888,000 locations. OBIS-USA, a legacy of the decade-long (2001-2010) international collaborative Census of Marine Life enterprise, continues to add data, including those from ongoing Census projects. Among the many challenges in creating OBIS, including OBIS-USA, were developing a community of trust and shared valueamong data providers, and demonstrating to providers the value of making their data accessible to others. Challenges also posed by the diversity of data sets relevant tomarine biodiversity stored on thousands of computers, in a variety of formats, not all widely accessible, have been met in OBIS-USA by implementing a uniform standard and publishing platform that is easily accessible to a broad range of users.

Oceanography↗