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USGS2019

The U.S. Geological Survey Southwest Biological Science Center—Sound science to serve the American Southwest

Home to Arches, Grand Canyon, and Saguaro National Parks, among others, the American Southwest’s landscapes are as fragile as they are iconic. Energy development, water security, and grassland restoration are important to the region as it experiences population growth and increased demand for resources. The U.S. Geological Survey’s Southwest Biological Science Center provides sound scientific information to help identify effective management strategies for the Southwest’s abundant natural resources and vast public lands. Research is focused on two key areas—dryland ecology and river science.

Arizona, California, Nevada, Utah↗
USGS2019

Ecosystems Mission Area bookmark

Scientists with the USGS Ecosystems Mission Area can be found at Science Centers and Cooperative Research Units across the Nation. We provide scientific research for the Department of the Interior that supports the management and conservation of our Nation’s biological resources.

General Information Product↗
USGS1963

A study of the food habits of some Lake Erie fish

A study of the food habits by means of stomach analyses of eight species of Lake Erie fishes was begun June 16, 1958. The species studied were smelt, yellow perch, troutperch, spottail shiner, sheepshead, yellow walleye (hereafter termed walleye), gizzard shad, and alewife. In a similar manner, stomach analyses were made of the white bass and channel catfish. Both projects were parts of a cooperative study of the life histories of Lake Erie fish. A total of 14,118 fish stomachs were examined; the analyses of their contents are reported here.

Bulletin of the Ohio Biological Survey↗
USGS2006

Water and sediment quality in the Yukon River basin, Alaska, during water year 2004

This report contains water-quality and sediment-quality data from samples collected in the Yukon River Basin from March through September during the 2004 water year (WY). Samples were collected throughout the year at five stations in the basin (three on the main stem Yukon River, one each on the Tanana and Porcupine Rivers). A broad range of physical, chemical, and biological analyses are presented.

Open-File Report↗
USGS1996

Field screening of water quality, bottom sediment, and biota associated with irrigation drainage in and near Walker River Indian Reservation, Nevada 1994-95

A study was begun in 1994 to determine whether the quality of irrigation drainage from the Walker River Indian Reservation, Nevada, has caused or has potential to cause harmful effects on human health or on fish and wildlife, or may adversely affect the suitability of the Walker River for other beneficial uses. Samples of water, bottom sediment, and biota were collected during June-August 1994 (during a drought year) from sites upstream from and on the Walker River Indian Reservation for analyses of trace elements. Other analyses included physical characteristics, major dissolved constituents, selected species of water-soluble nitrogen and phosphorus, and selected pesticides in bottom sediment. Water samples were collected again from four sites on the Reservation in August 1995 (during a wetterthan- average year) to provide data for comparing extreme climatic conditions. Water samples collected from the Walker River Indian Reservation in 1994 equaled or exceeded the Nevada water-quality standard or level of concern for at least one of the following: water temperature, pH, dissolved solids, unionized ammonia, phosphate, arsenic, boron, chromium, lead, and molybdenum; in 1995, only a single sample from one site exceeded a Nevada water-quality standard for molybdenum. Levels of concern for trace elements in bottom sediment collected in 1994 were equaled or exceeded for arsenic, iron, manganese, and zinc. Concentrations of organochiorine pesticide residues in bottom sediment were below analytical reporting limits. Levels of concern for trace-elements in samples of biota were equaled or exceeded for arsenic, boron, copper, and mercury. Results of toxicity testing indicate that only water samples from Walker Lake caused a toxic response in test bacteria. Arsenic and boron concentrations in water, bottom sediment, and biological tissue exceeded levels of concern throughout the Walker River Basin, but most commonly in the lower Walker River Basin. Mercury also was elevated in several biological samples collected throughout the Basin, although concentrations in water and bottom sediment were below analytical reporting limits. Sources of arsenic, boron, and mercury in the Basin are uncertain, but ambient levels reported for a variety of sample matrices collected from western Nevada generally exceed ranges cited as natural background levels. Because these potentially toxic constituents exceeded concern levels in areas that do not directly receive irrigation drainage, concentrations measured in samples collected for this study may not necessarily be attributable to agricultural activities. Diversion of river water for irrigation may have greater effects on beneficial uses of water and on fish and wildlife than does drainage from agricultural areas on the Reservation. In 1994, agricultural water consumption precluded dilution of ground-water seepage to the river channel. This resulted in concentrations of potentially toxic solutes that exceeded levels of concern. Diversion of irrigation water also may have facilitated leaching of potentially toxic solutes from irrigated soil on the Reservation, but during this study all water applied for irrigation on the Reservation was either consumed by evapotranspiration or infiltrated to recharge shallow ground water. No irrigation drainage was found on the Reservation during this study. However, because 1994 samples of ground-water seepage to the Walker River channel exceeded at least six Nevada waterquality standards, water-quality problems may result should ground-water levels rise enough to cause ground-water discharge to the agricultural drain on the Reservation. Nevertheless, the potential for adverse effects from irrigation drainage on the Reservation is believed to be small because surface-water rights for the Walker River Indian Reservation amount to only 2 percent of total surface- water rights in the entire Walker River Basin.

California, Nevada↗
USGS1973

Propagation of barn owls in captivity

Some aspects of the biology and life history of native birds often are more readily obtained in captivity than in the field. This is particularly true in evaluating the effects of pesticides or other pollutants on birds, because establishing cause-and-effect relationships requires experimental studies. Few wild species have been bred in captivity with sufficient success to permit the large-scale studies that are needed. This paper reports successful efforts to breed Barn Owls ( Tyto alba prolinicol a) in captivity and presents biological data concerning reproduction.

The Auk↗
USGS1987

Hydrologic data for selected streams in the coal area of southeastern Oklahoma, July 1978 to September 1982

Hydrologic data on quantity and quality of surface waters were collected in the coal resource area of southeastern Oklahoma during an investigation of the effects of coal surface mining on the hydrology of the area. The objective of the study was to determine the characteristics of the regional hydrologic system and to detect and document changes in the system that may occur as the result of coal surface mining. This report presents data which were collected at 13 sites in 4 counties between July 1978 and September 1982. The data include: (1) mean daily stream discharge; (2) physical properties, selected field constituents, and concentration of suspended sediment of water samples; (3) concentration of selected common constituents, nutrients, and trace elements of water samples; (4) mean daily specific conductance, pH, water temperature, and dissolved oxygen; and (5) analyses of biological samples.

Open-File Report↗
USGS2010

Temporal change in biological community structure in the Fountain Creek basin, Colorado, 2001-2008

In 2001, the U.S. Geological Survey, in cooperation with Colorado Springs City Engineering, began a study to better understand the relations between environmental characteristics and biological communities in the Fountain Creek basin in order to aide water-resource management and guide future monitoring activities. To accomplish this task, environmental (streamflow, habitat, and water chemistry) and biological (fish and macroinvertebrate) data were collected annually at 24 sites over a 6- or 8-year period (fish, 2003 to 2008; macroinvertebrates, 2001 to 2008). For this report, these data were first analyzed to determine the presence of temporal change in macroinvertebrate and fish community structure among years using nonparametric multivariate statistics. Where temporal change in the biological communities was found, these data were further analyzed using additional nonparametric multivariate techniques to determine which subset of selected streamflow, habitat, or water-chemistry variables best described site-specific changes in community structure relative to a gradient of urbanization. This study identified significant directional patterns of temporal change in macroinvertebrate and fish community structure at 15 of 24 sites in the Fountain Creek basin. At four of these sites, changes in environmental variables were significantly correlated with the concurrent temporal change identified in macroinvertebrate and fish community structure (Monument Creek above Woodmen Road at Colorado Springs, Colo.; Monument Creek at Bijou Street at Colorado Springs, Colo.; Bear Creek near Colorado Springs, Colo.; Fountain Creek at Security, Colo.). Combinations of environmental variables describing directional temporal change in the biota appeared to be site specific as no single variable dominated the results; however, substrate composition variables (percent substrate composition composed of sand, gravel, or cobble) collectively were present in 80 percent of the environmental variable subsets that were significantly correlated with temporal change in the macroinvertebrate and fish community structure. Other important environmental variables related to temporal change in the biological community structure included those describing channel form (streambank height) and streamflow (normalized annual mean daily flow, high flood-pulse count). Site-specific results from this study were derived from a relatively small number of observations (6 or 8 years of data); therefore, additional years of data may reveal other sites with temporal change in biological community structure, or could define stronger and more consistent linkages between environmental variables and observed temporal change. Likewise current variable subsets could become weaker. Nonetheless, there were several sites where temporal change was detected in this study that could not be explained by the available environmental variables studied herein. Modification of current data-collection activities may be necessary to better understand site-specific temporal relations between biological communities and environmental variables.

Scientific Investigations Report↗
USGS2019

Genetic and morphological differences between water chestnut (Myrtales: Lythraceae: Trapa) populations in the northeastern United States, Japan, and South Africa

This Special Report (SR) outlines preliminary work conducted under the Aquatic Plant Control Research Program (APCRP) to investigate genetic and morphological differences of Trapa taxa (water chestnut) in the Northeastern (NE) US. Comparisons of morphological characteristics and genetics were made between Trapa populations from the native region of Eurasia and Africa versus the NE US. Unpublished data suggests a new introduction of Trapa (herein referred to as Trapa sp.) has occurred in the Commonwealth of Virginia, US with unknown biology and life history. Observations of morphological and phenological characteristics of this potential new taxon of Trapa differ from those typically found with naturalized Trapa natans reported in the NE US. A better understanding of the biology and ecology of Trapa sp. is warranted to identify control strategies that would benefit water resource managers tasked with management of water chestnut.

Technical Report↗
USGS2026

Environmental DNA pilot monitoring program for invasive species and biodiversity assessments on Santa Cruz Island: Interim report, September 2025

The U.S. Geological Survey (USGS) and Southern California Coastal Water Research Project supported Channel Islands National Park, The Nature Conservancy’s (TNC) Santa Cruz Island Preserve, and University of California San Diego (UCSD) researchers in using environmental DNA sampling to monitor for invasive Argentine ant ( Linepithema humile ) and to describe spatial biodiversity patterns in a freshwater stream on Santa Cruz Island that is colloquially known as Cañada del Puerto Creek (hydrologic unit code 12 number 180600140201). An eDNA autosampler was deployed May 27–June 02, 2025, which filtered and preserved four 2-L water samples every 12 hours (n = 48 samples). These samples were extracted by USGS and shipped to UCSD for targeted eDNA analyses of Argentine ant. Environmental DNA sampling kits were used to filter and preserve water samples at four sites along the creek spanning ~ 5 km of stream distance. Six 1-L samples were collected at each site May 27–28 and samples were analyzed for eDNA metabarcoding using a comprehensive panel, which encompasses species across the tree of life. In these samples, eDNA from 2,134 unique taxa spanning 30 taxonomic groups (e.g., amoebas, insects, plants) were found. These sampling efforts demonstrated how eDNA autonomous and manual sampling approaches can be applied by National Park Service, TNC, and partners at scale to provide otherwise difficult and expensive to acquire information about biological threats and biodiversity.

California↗
USGS2008

Total Mercury, Methylmercury, and Carbon and Nitrogen Stable Isotope Data for Biota from Selected Streams in Oregon, Wisconsin, and Florida, 2002-04

The U.S. Geological Survey National Water-Quality Assessment Program conducted a multidisciplinary study to investigate the bioaccumulation of mercury from 2002 to 2004. Study areas were located in Oregon, Wisconsin, and Florida. Each study area included one urban site, and one or two nonurban sites that had the following attributes: high-percent wetland or low-percent wetland. Periphyton, macroinvertebrates, and forage fish were collected twice per year (during 2003 and 2004) to capture seasonality. Top predators, specifically largemouth bass (Micropterus salmoides), brown trout (Salmo trutta), and cutthroat trout (Oncorhynchus clarkii), were collected once per year (Oregon, Wisconsin, and Florida in 2003; Florida only in 2004). All biota were identified to the lowest possible taxonomic category and were analyzed for mercury and stable carbon and nitrogen isotopes. Periphyton and invertebrates were analyzed for total mercury and methylmercury; fish were analyzed for total mercury only. This report presents (1) methodology and data on mercury, methylmercury, stable isotopes, and (2) other ecologically relevant measurements in biological tissues of periphyton, invertebrates, forage fish, and predator fish.

Data Series↗
USGS1974

Effect of mine drainage on the quality of streams in Colorado, 1971-72

In July 1971, a study of the effects of mine drainage on Colorado's streams was begun in cooperation with the Colorado Water Pollution Control Commission. The objectives of this study were to determine the extent and magnitude of the problem as a whole, and to gain a greater understanding of the processes and their potential ramifications by detailed definition of problems in specific areas. In order to accomplish these objectives, a three-pronged approach was devised to include: (1) a reconnaissance of the entire State to locate problem areas, (2) the detailed study of selected problem areas on a short-term basis, and (3) the monitoring of selected problem areas on a long-term basis. This report summarizes the results of the reconnaissance phase. It describes some basic physical, chemical, and biological water-quality characteristics of the streams, discusses observed effects of mine drainage on the surface-water environment, delineates problem areas, and provides a list of streams where intensive study and subsequent monitoring might provide further insight into the various problems encountered.

Colorado↗
USGS2017

Facilitating adaptation in montane plants to changing precipitation along an elevation gradient

Montane plant communities throughout the world have responded to changes in precipitation and temperature regimes by shifting ranges upward in elevation. Continued warmer, drier climate conditions have been documented and are projected to increase in high-elevation areas in Hawai‘i, consistent with climate change effects reported in other environments throughout the world. Organisms that cannot disperse or adapt biologically to projected climate scenarios in situ may decrease in distributional range and abundance over time. Restoration efforts will need to accommodate future climate change and account for the interactive effects of existing invasive species to ensure long-term persistence. As part of a larger, ongoing restoration effort, we hypothesized that plants from a lower-elevation forest ecotype would have higher rates of survival and growth compared to high-elevation forest conspecifics when grown in common plots along an elevation gradient. We monitored climate conditions at planting sites to identify whether temperature or rainfall influenced survival and growth after 20 weeks. We found that origin significantly affected survival in only one of three native montane species, Dodonaea viscosa. Contrary to our hypothesis, 75.2% of seedlings from high-elevation origin survived in comparison to 58.7% of seedlings from low elevation across the entire elevation gradient. Origin also influenced survival in linearized mixed models that controlled for temperature, precipitation, and elevation in D. viscosa and Chenopodium oahuense. Only C. oahuense seedlings had similar predictors of growth and survival. There were no common patterns of growth or survival between species, indicating that responses to changing precipitation and emperature regimes varied between montane plant species. Results also suggest that locally sourced seed is important to ensure highest survival at restoration sites. Further experimentation on larger spatial and temporal scales is necessary to determine the empirical responses of species and communities to changing climate in the full context of highly degraded Hawaiian ecosystems.

Hawai'i↗
USGS1992

Streamflow, water-quality, and biological data on streams in an area of longwall coal mining, southern Ohio, water years 1987-89

This report presents data on the first 3 years of a 5-year study of the effects of longwall coal mining on six streams near a mining complex in Meigs, Gallia, and Vinton Counties, Ohio. Longwall coal mining is method of underground mining in which 75 to 90 percent of the coal is removed; conventional methods, such as room-and-pillar mining, remove only about 50 percent of the coal. Use of the longwall method is expected to increase in Ohio. Collapse or subsidence of the overburden and land surface occurs immediately after the removal of the coal. Such collapse can disrupt surface drainage and the recharge of ground water. The data include streamflow, water quality, and the abundance and diversity of aquatic macroinvertebrates and fish. The data were collected from eight sites on six streams from July 1987 through September 1989. The drainage areas of these sites range from 2.04 to 80.8 square miles and include the major drainages of the area being mined. Total precipitation in 1987 and 1988 in the study area was 78 and 81 percent, respectively, of the annual average (from 1939 to 1989) of 39.59 inches. The total precipitation in 1989 was 135 percent of the annual average. Streams at six of the eight sites were dry for parts of the first 2 years. Specific conductance ranged from 180 to 3,500 microsiemens per centimeter at 25 degrees Celsius, pH ranged from 6.9 to 8.0, and the concentration of total recoverable iron ranged from 80 to 1,800 micrograms per liter. Macroinvertebrate and fish populations indicate a warmwater-habitat rating of fair to good according to Ohio Environmental Protection Agency standards. This information will help provide a data base from which the effects of longwall mining on streams in southern Ohio can be evaluated. Correlations of surface-water quality and quantity with longwall mining were not attempted in this study.

Open-File Report↗
USGS2008

Alkylphenols, other endocrine-active chemicals, and fish responses in three streams in Minnesota — Study design and data, February-September 2007

This report presents the study design and environmental data for an integrated chemical and biological study of three streams (South Fork Crow River, Redwood River, and Grindstone River) that receive wastewater in Minnesota. The objective of the study was to identify distribution patterns of endocrine-active chemicals and other organic chemicals indicative of wastewater, and to identify fish responses in the same streams. Endocrine-active chemicals are a class of chemicals that interfere with the natural regulation of endocrine systems, and an understanding of their distribution in aquatic systems is important so that aquatic organism exposure can be evaluated. This study was a cooperative effort of the U.S. Geological Survey (USGS), the Minnesota Pollution Control Agency, and St. Cloud State University (St. Cloud, Minn.). The USGS collected and analyzed water and quality-assurance samples and measured streamflow during six sampling events in each of three streams. Water samples were collected upstream from and at two successive points downstream from wastewater-treatment plant (WWTP) effluent discharge and from treated effluent from February through September 2007. Bed-sediment samples were collected during one sampling period at each of the stream locations. Water and bed-sediment samples were analyzed for endocrine-active chemicals including alkylphenols, alkylphenol polyethoxylates, and nonylphenol ethoxycarboxlylates (NPECs). Water samples also were analyzed for major ions, nutrients, and organic carbon. In addition, as part of an intensive time-series investigation, the USGS staff collected daily water samples for 8 weeks from the Redwood River near Marshall, Minn., for analyses of total alkylphenols and atrazine. St. Cloud State University staff collected and analyzed fish to determine male fish responses at all water sampling sites and at an additional site near the discharge of wastewater-treatment plant effluent to these streams. Male fish responses included the presence and concentration of vitellogenin in plasma, gonadosomatic indices, and histological characterizations of liver and testes tissue. Hydrologic, chemical and biological characteristics were different among sites. The percentage of streamflow contributed by WWTP effluent (ranging from less than 1 to 79 percent) was greatest at the South Fork Crow River and least at the Grindstone River. WWTP effluent generally contributed the greatest percentage of streamflow during winter and late summer when streamflows were low. A wide variety of chemicals were detected. More chemicals were detected in WWTP effluent samples than in stream samples during most time periods. The most commonly detected chemicals in samples collected monthly and analyzed at the USGS National Research Program Laboratory were 2,6-di- tert -butyl-1,4-benzoquinone, 2,6-di- tert -butyl-4-methylphenol, 3- beta -coprostanol, 4-methylphenol, 4-nonylphenol (NP), 4- tert -octylphenol, bisphenol A, cholesterol, ethylenediaminetetraacetic acid, and triclosan. The chemicals 4-nonylphenolmonoethoxycarboxylate (NP1EC), 4-nonylphenoldiethoxycarboxylate (NP2EC), and 4-nonylphenoltriethoxycarboxylate (NP3EC) also were detected. Excluding nondetections, the sum of NP1EC through NP3EC concentrations ranged from 5.1 to 260 µg/L among all samples. NP was detected in upstream, effluent, and downstream samples in each stream during at least one time period. NP was detected in 49 percent of environmental samples. Excluding nondetections, concentrations of NP ranged from 100 to 880 nanograms per liter among all samples. NP was also detected in more than one-half of the bed-sediment samples. The most commonly detected wastewater indicator chemicals in samples analyzed by schedule 4433 at the USGS National Water Quality Laboratory were 3,4-dichlorophenyl isocyanate, acetyl-hexamethyl-tetrahydronaphthalene, benzophenone, cholesterol, hexahydrohexamethyl-cyclopenta-benzopyran, N,N-diethyl- meta -toluamide, and tri(dichloroisopropyl) phosphate. Male fish responses were the focus of the fish analyses, and 508 male fish were collected among all sampling sites. Vitellogenin was detected in 57 percent of the 415 male fish analyzed; concentrations ranged from an estimated value of 0.1 to 330 micrograms per milliliter (µg/mL) (average of 17.1 µg/mL). Intersex (the presence of oocytes in testes tissue) was observed in only one fathead minnow from an upstream site on the Grindstone River.

Minnesota↗