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USGS2022

South Carolina and Landsat

South Carolina, the eighth State admitted to the union, transcends its size with its deep, rich history; striking beauty; vast natural resources; and extensive cultural diversity. Home to part of the Blue Ridge Mountains of the Central Appalachians, the Upstate is graced with more than 100 waterfalls, while the Lowcountry borders the Atlantic Ocean with 187 miles of coastline and 35 barrier islands. Forests cover two-thirds of the State, and forestry and agriculture together, as agribusiness, make up South Carolina’s leading industry. Two historic crops—cotton and tobacco—still rank in the top 10 commodities, though corn and soybeans now rank higher. Poultry, cattle, peanuts, and flowers also make the list. South Carolina’s population totals more than five million. Other residents include a variety of wildlife, bird, reptile, and fish species, including Ursus americanus (black bears), Alligator mississippiensis (American alligators), and Tursiops truncatus (bottlenose dolphins). More than 100 tree species also reside in South Carolina, which pays homage to one with its “The Palmetto State” nickname. South Carolina’s subtropical climate, long coastline, and lower elevations make it highly susceptible to tornado and hurricane activity and coastal flooding. Projected sea-level rise is a growing concern. A view from space can help monitor and manage natural resources on the land and in rivers, marshes, and the coast. Landsat reveals not just what an area looks like now, but also insights from decades ago.

South Carolina↗

USGS1979

Forest and flooding with special reference to the White River and Ouachita River basins, Arkansas

The observed response of trees to hydrologic stress and distribution of trees in relation to habitat indicate that flooding, ground-water level, soil moisture, soil factors, and drainage characteristics exert a strong influence on bottomland forest species distribution. The dominant hydrologic factor influencing the distribution of bottomland tree species is flooding. Individual tree species are distributed as a function of frequency and duration of flooding. In the lower White and Ouachita River basins, the flood plains consist of a series of terraces, progressively higher terraces having less frequent flooding and less duration of flooding, and a significantly different composition of forest tree species. The sites studied can be divided into four basic groups and several subgroups on the basis of flood characteristics. On Group I (water hickory-overcup oak) sites, flooded near annually 32 to 40 percent of the time, the dominant species are water hickory and overcup oak. On Group II (nuttall oak) sites, flooded near annually 10 to 21 percent of the time, a more varied flora exists including nuttall oak, willow oak, sweetgum, southern hackberry, and American elm. The third group (Group III or shagbark hickory-southern red oak) of sites is flooded at intervals from 2 to 12 years. This group includes southern red oak, shagbark hickory, and black gum. The presence of blackjack oak in addition to Group III species marks Group IV (not flooded in historic time). (Kosco-USGS)

Arkansas↗

USGS2011

Chronology, sedimentology, and microfauna of groundwater discharge deposits in the central Mojave Desert, Valley Wells, California

During the late Pleistocene, emergent groundwater supported persistent and long-lived desert wetlands in many broad valleys and basins in the American Southwest. When active, these systems provided important food and water sources for local fauna, supported hydrophilic and phreatophytic vegetation, and acted as catchments for eolian and alluvial sediments. Desert wetlands are represented in the geologic record by groundwater discharge deposits, which are also called spring or wetland deposits. Groundwater discharge deposits contain information on the timing and magnitude of past changes in water-table levels and, thus, are a source of paleohydrologic and paleoclimatic information. Here, we present the results of an investigation of extensive groundwater discharge deposits in the central Mojave Desert at Valley Wells, California. We used geologic mapping and stratigraphic relations to identify two distinct wetland sequences at Valley Wells, which we dated using radiocarbon, luminescence, and uranium-series techniques. We also analyzed the sediments and microfauna (ostracodes and gastropods) to reconstruct the specific environments in which they formed. Our results suggest that the earliest episode of high water-table conditions at Valley Wells began ca. 60 ka (thousands of calendar yr B.P.), and culminated in peak discharge between ca. 40 and 35 ka. During this time, cold (4–12 °C) emergent groundwater supported extensive wetlands that likely were composed of a wet, sedge-rush-tussock meadow mixed with mesic riparian forest. After ca. 35 ka, the water table dropped below the ground surface but was still shallow enough to support dense stands of phreatophytes through the Last Glacial Maximum (LGM). The water table dropped further after the LGM, and xeric conditions prevailed until modest wetlands returned briefly during the Younger Dryas cold event (13.0–11.6 ka). We did not observe any evidence of wet conditions during the Holocene at Valley Wells. The timing of these fluctuations is consistent with changes in other paleowetland systems in the Mojave Desert, the nearby Great Basin Desert, and in southeastern Arizona, near the border of the Sonoran and Chihuahuan Deserts. The similarities in hydrologic conditions between these disparate locations suggest that changes in groundwater levels during the late Pleistocene in desert wetlands scattered throughout the American Southwest were likely driven by synoptic-scale climate processes.

California↗

USGS1994

Conservation of invertebrates in US National Parks

Entomologists who enter national parks often are surprised by the diversity of life and geography found in these remarkable natural areas. There are ichneumon wasps, carabid beetles, leps…and, of course, there are trees and mountains. In contrast, an average person entering the same parks will see the magnificent mountains and rivers, the endless forests and meadows, and the abundant wildlife. The experience would be pure joy if it were not for pesky mosquitoes. This difference in perspective explains why insects, and invertebrates in general, have traditionally been a low priority in the National Park Service (NPS). Typically, invertebrates are ignored until they cause problems.

American Entomologist↗

USGS1973

Summer behavior of immature radio-equipped woodcock in central Maine

The behavior of 15 immature American woodcock ( Philohela minor ) was studied in central Maine during the summers of 1969 and 1970 using radiotelemetry. The monitored birds used a variety of nocturnal sites including old fields, bogs, powerlines, highway medians, woods roads, and fore clearings. Old fields were occupied more often than any other type of opening. Second growth-hardwoods, alders, hardwood-conifers, and conifers were utilized as diurnal cover. Diurnal locations of radio-equipped woodcock averaged 15 m from major breaks in the forest canopy. Four birds were monitored continuously during the day and night to determine periods of activity. Although the birds were active throughout the day, very little activity was recorded after they moved to nocturnal sites. No apparent difference was found in the daily patterns of movement between immature male and female woodcock. Crepuscular movements between diurnal covers and nocturnal areas averaged 332 m. A composite summer range for the 15 woodcock during 183 woodcock-days was 1060 hectares. The data suggest that immature woodcock are quite mobile during the summer and utilize most of the forest openings occurring within 1-3 km of good nesting habitat. Most of these openings are also used for singing grounds by males in the spring.

Maine↗

USGS2000

Development of management objectives for waterfowl and shorebirds within the Mississippi Alluvial Valley

The goal of the Lower Mississippi Valley Joint Venture of the North American Waterfowl Management Plan is to provide sufficient habitat to support 4.3 million wintering ducks and 1.0 million wintering geese annually. Under the assumption that the amount of foraging habitat is the primary limitation to supporting waterfowl population goals in the Mississippi Alluvial Valley (MAV), a habitat objective to make available 285,000 ha of waterfowl foraging habitat is divided among seven states. This habitat objective is further divided between public and private ownership and among three habitat types: Bottomland hardwood forest, moist-soil sites, and agricultural fields. Management objectives for shorebirds within the MAV which provide foraging habitat for 0.5 million shorebirds during their southward migration have been tentatively established. Several as yet unverified assumptions were used in establishing these objectives; consequently, we caution that the objectives are subject to revision as the assumptions are tested. We assumed that 0.5 million shorebirds move through the MAV during late summer and fall, each foraging for an average of 10 days. During this migration period, foraging shorebirds are assumed to require sufficient forage to gain 1 g of biomass per day, in addition to their basal metabolic needs. Given an invertebrate food supply that provides 17.6 kj ? g-1, we calculated that an average 45 g shorebird requires about 8 g of invertebrate forage per day. Further assuming that each ha of managed shorebird habitat can provide 20 kg of invertebrate food resources available to shorebirds, we extrapolated a need for 2000 ha of shorebird foraging habitat. We suggest that the bulk of this foraging habitat be provided on public lands and that it be distributed throughout the MAV.

Book chapter↗

USGS2008

Long-term decline and short-term crash of the once abundant Rusty Blackbird

The Rusty Blackbird (Euphagus carolinus), a formerly common breeding species of boreal wetlands, has exhibited the most marked decline of any North American landbird. North American Breeding Bird Survey (BBS) trends in abundance are estimated to be -12.5% / yr over the last 40 years, which is tantamount to a >95% cumulative decline. Trends in abundance calculated from Christmas Bird Counts (CBC) for a similar period indicate a range-wide decline of -5.6% / yr. Qualitative analyses of ornithological accounts suggest the species has been declining for over a century before the period covered by the estimated declines. Several studies document range retraction in the southern boreal forest, whereas limited data suggest that abundance may be more stable in more northerly areas. This pattern is both supported and contradicted by winter declines based in CBC data. The lower estimates of decline in the CBC data compared to BBS is consistent with the idea that the coverage of BBS is biased towards the southern boreal whereas CBC covers the entire winter range. However, the CBC declines are similar between the South Atlantic coast (with populations derived from the southeastern boreal) and the Mississippi Valley (populations from the northwest boreal). The major hypotheses for the decline include degradation of boreal habitats from logging and agricultural agricultural development, mercury contamination, and wetland desiccation resulting from global warming. Other likely reasons for decline include loss or degradation of wooded wetlands of the southeastern U.S and mortality associated with abatement efforts targeting nuisance blackbirds. We present a matrix of hypotheses and predictions that test them based on the geography of decline and more detailed indicators of population health which should form the strategic basis of future research.

Book chapter↗

USGS2006

Vascular Plant and Vertebrate Inventory of Gila Cliff Dwellings National Monument

Executive Summary This report summarizes the results of the first comprehensive biological inventory of Gila Cliff Dwellings National Monument (NM) in western New Mexico. This project was part of a larger effort to inventory plants and vertebrates in eight National Park Service units in Arizona and New Mexico. Our surveys address many of the objectives that were set forth in the monument's natural resource management plan almost 20 years ago, but until this effort, those goals were never accomplished. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at Gila Cliff Dwellings NM to document presence of species within the boundaries of the monument. For all taxonomic groups that we studied, we collected 'incidental' sightings on U.S. Forest Service lands adjacent to the monument, and in a few cases we did formal surveys on those lands. Because we used repeatable study designs and standardized field techniques, these inventories can serve as the first step in a biological monitoring program for Gila Cliff Dwellings NM and surrounding lands. We recorded 552 species at Gila Cliff Dwellings NM and the surrounding lands (Table 1). We found no non-native species of reptiles, birds, or mammals, one non-native amphibian (American bullfrog), and 33 non-native plants. Particularly on lands adjacent to the monument we found that the American bullfrog was very abundant, which is a cause for significant management concern. Species of non-native plants that are of management concern include red brome, bufflegrass, and cheatgrass. For a park unit of its size and geographic location, we found the plant and vertebrate communities to be fairly diverse; for each taxonomic group we found representative species from a wide range of taxonomic orders and/or families. The monument's geographic location, with influences from the Rocky Mountain, Chihuahuan Desert, and Madrean ecological provinces, plays an important role in determining the species richness at the monument. Also important is the wide range of conditions at the site. The diversity of plants results from a wide variety of soil types and aspects (from the cool, moist Cliff Dweller Canyon to dry mesa slopes) and an abundance of water from the West Fork of the Gila River. In turn, the vertebrate communities respond to this diversity of vegetation, topography, and microsites. For example, for each taxonomic group we found species that were only associated with a single community type, most often the riparian areas along the West and Middle forks of the Gila River. We found cause for significant concern with regard to loss of species in the last few decades. One species of amphibian (Chiricahua leopard frog) is certainly extirpated from the area. Three other species of amphibians (Mexican spadefoot, Woodhouse's toad, and red-spotted toad), reported as being 'common' in the area in 1971, were not found during our surveys. In addition, we did not find three species of rodents that were found in 1965: silky pocket mouse, Ord's kangaroo rat, and southern grasshopper mouse. The monument's aquatic vertebrate component, in particular, may be at a critical juncture whereby other species, such as gartersnakes, may be poised for extirpation. Declining abundance of native fish species has been demonstrated from long-term monitoring of these communities along the Middle Fork of the Gila River. This report includes lists of species recorded by us or species likely to be recorded with additional survey effort. It also includes management implications from our work - how the monument staff might better maintain or enhance the unique biological resources of the monument. This study is the first step in a long-term process of compiling information on the biological resources of the monument and its surrounding areas. We recommend additional inventory and monitoring studies and identify components of our effort that could be improved upon

Open-File Report↗

USGS2025

Geomorphic habitat response units for urban stream rehabilitation, Milwaukee, Wisconsin

Urban stream rehabilitation plans can benefit from knowledge of the landscape setting and vegetative communities that were adjacent to streams prior to urbanization. Downstream to upstream connections of these characteristics can be relevant for native migratory fish species that have a range of preferred spawning habitats. Based on a need for more quantitative data on these potential connections, the U.S. Geological Survey assembled geomorphic characteristics, surficial geology, and pre-Euro-American settlement vegetation for 333 kilometers of stream segments in the Kinnickinnic River and Menomonee River subbasins of the Milwaukee River, Wisconsin. Channel slopes ranged from less than 0.3 percent to greater than 2 percent, covering at least two channel morphology and bedform types spanning low-energy irregular and pool-riffle complexes. Postglacial surficial geology ranged from coarse-grained outwash sand and gravel to lacustrine silt and clay, allowing for a range of stream substrate sizes. Presettlement riparian vegetation was mainly forest, including forested uplands, forested lowlands, and to a lesser extent, conifer-dominated wetlands in headwaters. This resulting framework of geomorphic habitat response units can be used for habitat rehabilitation projects for migratory native fish in other urban Great Lakes tributaries.

Wisconsin↗

USGS2015

Global trends in emerging viral diseases of wildlife origin

Fifty years ago, infectious diseases were rarely considered threats to wildlife populations, and the study of wildlife diseases was largely a neglected endeavor. Furthermore, public health leaders at that time had declared that “it is time to close the book on infectious diseases and the war against pestilence won,” a quote attributed to Dr. William H. Stewart in 1967. There is some debate whether he actually said these words; however, they reflect the widespread belief at that time (Spellberg, 2008). Leap forward to today, and the book on infectious diseases has been dusted off. There is general consensus that the global environment favors the emergence of infectious diseases, and in particular, diseases of wildlife origin (Taylor et al., 2001). Examples of drivers of these infectious diseases include climate and landscape changes, human demographic and behavior changes, global travel and trade, microbial adaptation, and lack of appropriate infrastructure for wildlife disease control and prevention (Daszak et al., 2001). The consequences of these emerging diseases are global and profound with increased burden on the public health system, negative impacts on the global economy and food security, declines and extinctions of wildlife species, and subsequent loss of ecosystem integrity. For example, 35 million people are currently living with HIV infection globally (http://www.who.int/gho/hiv/en); 400 million poultry have been culled since 2003 as a result of efforts to control highly pathogenic H5N1 avian influenza (http://www.fao.org/avianflu/en/index.html), and there are increasing biological and ecological consequences. Examples of health threats to biodiversity include the “spillover” of human diseases to great ape populations (Köndgen et al., 2008), the near-extirpation of the black-footed ferret from canine distemper and sylvatic plague (for a review see Abbott et al., 2012), and threats to Hawaiian forest birds from introduced pathogens such as avian malaria and avian pox (van Riper et al., 1986, 2002). There are also newly discovered pathogens or diseases that have resulted in population declines, and global extinctions of several species. Examples include Batrachochytrium dendrobatidis, which causes a cutaneous fungal infection of amphibians and is linked to declines of amphibians globally (Kriger and Hero, 2009); and recently discovered Pseudogymnoascus (Geomyces) destructans, the etiologic agent of white-nose syndrome (WNS), which has caused precipitous declines of North American bat species (Blehert et al., 2009). Furthermore, there is increasing evidence of the subsequent impacts on human and ecosystem health; for example, increasing risk of exposure to Lyme disease as a consequence of decreased biodiversity (LoGiudice et al., 2003) as well as the economic cost of the loss of bats due to decreased insect control services (Boyles et al., 2011). Figure A12-1 is a timeline of important diseases investigated by the U.S. Geological Survey since the 1970s, which illustrates three factors: 1. The unprecedented emergence of new pathogens and geographic spread of known pathogens since the 1990s; 2. Diseases are increasingly causing large-scale, negative impacts on wildlife populations and spreading over larger geographic areas rather than remaining localized; and 3. Diseases are increasingly of concern for multiple sectors, including public health, agriculture and wildlife management agencies. Of increasing concern are these novel diseases such as WNS as they are hard to anticipate, particularly devastating to human health or wildlife populations, challenging to manage, spread over large geographic areas in short time periods, and may result in ecological ripple effects that are difficult to predict. The following article provides examples of recently emerged viral diseases of wildlife origin. The examples have been selected to illustrate the drivers of emerging viral diseases, both novel pathogens and previously known diseases, the impacts of these diseases, as well as the role of wildlife both as “villains” or reservoirs as well as “victims” of these viral diseases. The article also discusses potential management strategies for emerging viral diseases in wildlife populations and future science directions in wildlife health to prevent, prepare, respond to, and recover from these disease events. Finally, the concept of One Health and its potential role in developing solutions to these issues of mutual concern is discussed.

Conference Paper↗

USGS2006

Effect of tree line advance on carbon storage in NW Alaska

We investigated the size, distribution, and temporal dynamics of ecosystem carbon (C) pools in an area of recent tree line advance, northwest Alaska. Repeat aerial photographs show forest cover increased ???10% in our study area since 1949. We sampled C pools of four principal ecosystem types, tussock tundra, shrub tundra, woodland, and forest, all located on a 600-800 year old river terrace. Significant differences between ecosystem C pools, both above ground and below ground existed. Tundra sites store >22.2 kg C/m2, shrub tundra sites and woodland sites store 9.7 kg C/m2 and 14.3 kg C/m2, respectively, and forest sites store 14.4 kg C/m2. Landscape variation of total ecosystem C was primarily due to organic soil C and was secondarily due to C stored in trees. Soil C/N profiles of shrub tundra sites and woodland sites showed similarities with forest site soils at surface and tundra site soils at depth. We hypothesize that tundra systems transformed to forest systems in this area under a progression of permafrost degradation and enhanced drainage. On the basis of C pool estimates for the different ecosystem types, conversion of tundra sites to forest may have resulted in a net loss of > 7.8 kg C/m2, since aboveground C gains were more than offset by belowground C losses to decomposition in the tundra sites. Tree line advance therefore might not increase C storage in high-latitude ecosystems and thus might not, as previously suggested, act as a negative feedback to warming. Key to this hypothesis and to its projection to future climate response is the fate of soil carbon upon warming and permafrost drainage. Copyright 2006 by the American Geophysical Union.

Journal of Geophysical Research G: Biogeosciences↗

USGS2010

Challenges of DNA-based mark-recapture studies of American black bears

We explored whether genetic sampling would be feasible to provide a region-wide population estimate for American black bears ( Ursus americanus ) in the southern Appalachians, USA. Specifically, we determined whether adequate capture probabilities ( p >0.20) and population estimates with a low coefficient of variation (CV <20%) could be achieved given typical agency budget and personnel constraints. We extracted DNA from hair collected from baited barbed-wire enclosures sampled over a 10-week period on 2 study areas: a high-density black bear population in a portion of Great Smoky Mountains National Park and a lower density population on National Forest lands in North Carolina, South Carolina, and Georgia. We identified individual bears by their unique genotypes obtained from 9 microsatellite loci. We sampled 129 and 60 different bears in the National Park and National Forest study areas, respectively, and applied closed mark–recapture models to estimate population abundance. Capture probabilities and precision of the population estimates were acceptable only for sampling scenarios for which we pooled weekly sampling periods. We detected capture heterogeneity biases, probably because of inadequate spatial coverage by the hair-trapping grid. The logistical challenges of establishing and checking a sufficiently high density of hair traps make DNA-based estimates of black bears impractical for the southern Appalachian region. Alternatives are to estimate population size for smaller areas, estimate population growth rates or survival using mark–recapture methods, or use independent marking and recapturing techniques to reduce capture heterogeneity.

Georgia, North Carolina, South Carolina, Tennessee↗

USGS2010

Canopy gap dynamics of second-growth red spruce-northern hardwood stands in West Virginia

Forest restoration requires an understanding of the natural disturbance regime of the target community and estimates of the historic range of variability of ecosystem components (composition, structure, and disturbance processes). Management prescriptions that support specific restoration activities should be consistent with these parameters. In this study, we describe gap-phase dynamics of even-aged, second-growth red spruce-northern hardwood stands in West Virginia that have been significantly degraded following early Twentieth Century harvesting and wildfire. In the current stage of stand development, gaps tended to be small, with mean canopy gap and extended canopy gap sizes of 53.4m2 and 199.3m2, respectively, and a canopy turnover rate of 1.4%year-1. The majority of gaps resulted from the death of one or two trees. American beech snags were the most frequent gap maker, partially due to the elevated presence of beech-bark disease in the study area. Gaps ranged in age from 1 to 28 years, had a mean of 13 years, and were unimodal in distribution. We projected red spruce to be the eventual gap filler in approximately 40% of the gaps. However, we estimated that most average-sized gaps will close within 15-20 years before red spruce canopy ascension is projected (30-60 years). Accordingly, many understory red spruce will require more than one overhead release - an observation verified by the tree-ring record and consistent with red spruce life history characteristics. Based on our observations, silvicultural prescriptions that include overhead release treatments such as thinning from above or small gap creation through selection harvesting could be an appropriate activity to foster red spruce restoration in the central Appalachians. ?? 2010 Elsevier B.V.

Forest Ecology and Management↗

USGS2009

Measurement of soil carbon oxidation state and oxidative ratio by 13 C nuclear magnetic resonance

The oxidative ratio (OR) of the net ecosystem carbon balance is the ratio of net O 2 and CO 2 fluxes resulting from photosynthesis, respiration, decomposition, and other lateral and vertical carbon flows. The OR of the terrestrial biosphere must be well characterized to accurately estimate the terrestrial CO 2 sink using atmospheric measurements of changing O 2 and CO 2 levels. To estimate the OR of the terrestrial biosphere, measurements are needed of changes in the OR of aboveground and belowground carbon pools associated with decadal timescale disturbances (e.g., land use change and fire). The OR of aboveground pools can be measured using conventional approaches including elemental analysis. However, measuring the OR of soil carbon pools is technically challenging, and few soil OR data are available. In this paper we test three solid-state nuclear magnetic resonance (NMR) techniques for measuring soil OR, all based on measurements of the closely related parameter, organic carbon oxidation state (C ox ). Two of the three techniques make use of a molecular mixing model which converts NMR spectra into concentrations of a standard suite of biological molecules of known C ox . The third technique assigns C ox values to each peak in the NMR spectrum. We assess error associated with each technique using pure chemical compounds and plant biomass standards whose C ox and OR values can be directly measured by elemental analyses. The most accurate technique, direct polarization solid-state 13 C NMR with the molecular mixing model, agrees with elemental analyses to ??0.036 C ox units (??0.009 OR units). Using this technique, we show a large natural variability in soil C ox and OR values. Soil C ox values have a mean of -0.26 and a range from -0.45 to 0.30, corresponding to OR values of 1.08 ?? 0.06 and a range from 0.96 to 1.22. We also estimate the OR of the carbon flux from a boreal forest fire. Analysis of soils from nearby intact soil profiles imply that soil carbon losses associated with the fire had an OR of 1.09 1 (??0.00 3 ). Fire appears to be a major factor driving the soil C pool to higher oxidation states and lower OR values. Episodic fluxes caused by disturbances like fire may have substantially different ORs from ecosystem respiration fluxes and therefore should be better quantified to reduce uncertainties associated with our understanding of the global atmospheric carbon budget. Copyright 2009 by the American Geophysical Union.

Journal of Geophysical Research G: Biogeosciences↗

USGS2004

A hierarchical spatial model of avian abundance with application to Cerulean Warblers

Surveys collecting count data are the primary means by which abundance is indexed for birds. These counts are confounded, however, by nuisance effects including observer effects and spatial correlation between counts. Current methods poorly accommodate both observer and spatial effects because modeling these spatially autocorrelated counts within a hierarchical framework is not practical using standard statistical approaches. We propose a Bayesian approach to this problem and provide as an example of its implementation a spatial model of predicted abundance for the Cerulean Warbler (Dendroica cerulea) in the Prairie-Hardwood Transition of the upper midwestern United States. We used an overdispersed Poisson regression with fixed and random effects, fitted by Markov chain Monte Carlo methods. We used 21 years of North American Breeding Bird Survey counts as the response in a loglinear function of explanatory variables describing habitat, spatial relatedness, year effects, and observer effects. The model included a conditional autoregressive term representing potential correlation between adjacent route counts. Categories of explanatory habitat variables in the model included land cover composition and configuration, climate, terrain heterogeneity, and human influence. The inherent hierarchy in the model was from counts occurring, in part, as a function of observers within survey routes within years. We found that the percentage of forested wetlands, an index of wetness potential, and an interaction between mean annual precipitation and deciduous forest patch size best described Cerulean Warbler abundance. Based on a map of relative abundance derived from the posterior parameter estimates, we estimated that only 15% of the species' population occurred on federal land, necessitating active engagement of public landowners and state agencies in the conservation of the breeding habitat for this species. Models of this type can be applied to any data in which the response is counts, such as animal counts, activity (e.g.,nest) counts, or species richness. The most noteworthy practical application of this spatial modeling approach is the ability to map relative species abundance. The functional relationships that we elucidated for the Cerulean Warbler provide a basis for the development of management programs and may serve to focus management and monitoring on areas and habitat variables important to Cerulean Warblers.

Ecological Applications↗

USGS2015

Geological processes and orchid biogeography with applications to southeast central America

This contribution owes its origins to a paper presentation by Dr. Calloway H. Dodson at the Second International Conference on Neotropical Orchidology held in San José, Costa Rica in May of2003 (Dodson 2003). Dr. Dodson outlined some ofthe reasons to suspect that regional geological fac-tors may play important roles in orchid speciation and biogeography and gave examples from the northwestern South America. He also suggested that evolutionary change in orchid might occur over fairly short time periods, perhaps even as short as decades, centuries or millennia (Dodson 2003, SHK lecture notes). These ideas stimulated the author, a professional earth scientist, to begin thinking about how these exciting ideas could begin to be tested in Costa Rica neighboring and Central American countries, an area that has drawn him to return frequently over the last decade. The present contribution is a proposal for integrating geological observations, such as the chronology of arc volcanic activity in Nicaragua,Costa Rica, and Panama, in hypothesis forming and testing of the geographic distribution of orchids (and possibly other biota). I initially focus on comparisons between orchid inventories on the windward slopes of mountainous regions (elevation > 1000 m)with high rainfall (> 1-2 m) in tropical regions, the so-called tropical cloud forests. These regions represent the tropical pre-montane rain forestto lower montane tropical rain forest life zones of Holdridge(1967) and the montane vegetation zone applied to Costa Rica and Panama by Dressler (1993). An important message of this paper is that such tropical mountainous regions are not necessarily static, but may change in elevation over geologic time due to active tectonic deformation and uplift and that the presence of active volcanism in a mountain range may also introduce additional chemical factors, such as volcanic gases, acid rain, and volcanic soils, and also physical factors, such as interruption of gene flow by explosive eruptions and coverage by their air fall products such as ash (tephra), lava flows, and lahars (volcanic mudflows). Thus over a given geological time interval, forests may be slowly increasing in elevation by tectonic uplift or by the accumulation of volcanic products such as steep-sided strato volcanoes (built from both lavas and tephra), or by down-slope accumulations of lava flows or lahars. Mountains may also lose elevation by erosion or by tectonic subsidence. As we shall see, tropical Central America shows an extraordinarily high level of tectonic and volcanic history that has changed its geography and, by implication, climate, life zones,and likely orchid distribution. My working hypo thesis put forward for testing is that orchid adaptations to these changes may have led to the development of new species and endemism in this region.

Lankesteriana↗

USGS2014

Digital topographic data based on lidar survey of Mount Shasta Volcano, California, July-September 2010

The most voluminous of the Cascade volcanoes, northern California’s Mount Shasta, is a massive compound stratovolcano composed of at least four main edifices constructed over a period of at least 590,000 years. An ancestral Shasta volcano was destroyed by Earth’s largest known Quaternary subaerial debris avalanche, which filled Shasta Valley, northwest of the volcano. The Hotlum cone, forming the present summit, the Shastina lava dome complex, and the Black Butte lava dome on the southwest flank, were constructed during the early Holocene. As part of the American Recovery and Reinvestment Act (ARRA) of 2009, the U.S. Geological Survey was awarded funding for high-precision airborne lidar (light detection and ranging) data collection at several volcanoes in the Cascade Range. Data collection was arranged by the Oregon Lidar Consortium, administered by the Oregon Department of Geology and Mineral Industries (DOGAMI). The Oregon Lidar Consortium contracted with Watershed Sciences, Inc., to collect 1,220 square km of high-precision airborne lidar data. These data provide a digital map of the ground surface beneath forest cover with horizontal resolution of 1 m (average of 1.82 ground laser returns per square meter) and estimated vertical accuracy of ±4 centimeters (1 sigma), and horizontal accuracies of ±1.5 centimeters. These data will contribute to monitoring and description of natural hazards, the study of regional geology and volcanic landforms, and analysis of landscape modification during and after the next volcanic eruption at Mount Shasta. Survey Bounding Coordinates: West Bounding Coordinate: −122.438774 East Bounding Coordinate: −121.888382 North Bounding Coordinate: 41.564495 South Bounding Coordinate: 41.126339

California↗

USGS1986

The Breeding Bird Survey: Its first fifteen years, 1965-1979

The Breeding Bird Survey (BBS) is an ongoing cooperative program sponsored jointly by the U.S. Fish and Wildife Service and the Canadian Wildlife Service. Its main purpose is to estimate population trends of the many species of birds that nest in North America north of Mexico and that migrate across international boundaries. This survey provides information, both locally by ecological or political regions and on a continental scale, on (1) short-term population changes that can be correlated with specific weather incidents, (2) recovery periods following catastrophic declines, (3) normal year-to-year variations, (4) long-term population trends, and (5) invasions of exotics. The BBS also permits detailed computer mapping of relative abundance of each species, either year by year to show changes in distribution and relative abundance, or the average over a period of years. It provides base-line data with which more intensive local studies can be compared. For biogeographic studies it provides uniform sampling of bird populations by major physiographic regions across the continent. In conjunction with the Audubon Christmas Bird Count, it permits comparison of summer and winter distribution of species that winter in the United States. Most species of North American birds migrate across international boundaries, especially those shared with Canada, Mexico, and the Soviet Union. As part of our responsibility under treaties with these nations, the U.S. Fish and Wildlife Service has developed the BBS to monitor avian population changes so that any adverse trends can be detected early. This provides the opportunity to determine the reasons for any increase or decrease, to define geographic areas in which changes are greatest, to study correlations between avian population changes and land-use changes, and to make recommendations for controlling undesirable bird population trends. For example, the BBS can be used to detect and estimate the extent of losses resulting from widespread use of pesticides, and to reveal whether major population changes of a given species (e.g., Dickcissel) in certain States are related to a continental decline or are merely a result of population shifts within the breeding range. Effects of urban and suburban expansion are often reflected in the loss of forest interior birds. Population trends for 230 species as well as several avian genera and families are discussed and graphed in this report. For most of these species, regional and well as continental trends are shown. The three major regions discussed are the Eastern, Central, and Western, bounded by the Mississippi River and the eastern base of the Rocky Mountains. Additional graphs for certain States or physiographic regions are included for selected species of special interest. The following paragraphs summarize general trends in the major bird families. The native herons in general are maintaining their populations, whereas the exotic Cattle Egret continues its geographic spread and its steady increase. Waterfowl as a group are stable or increasing. Although most widespread species of hawks are on the increase, the rarer species show evidence of decline. Among the gallinaceous birds, the greatest change was a sharp drop in Northern Bobwhite as a result of the exceptionally cold winters of 1976-77 and 1977-78 in the Ohio Valley and the Middle Atlantic States. Killdeer populations, except for a minor decline during these two winters, showed strong increases except in the West. American Woodcock were poorly sampled by the BBS because they were relatively inactive during daylight. Common Snipe and the other common shorebirds that nest in the United States and southern Canada exhibited stable or increasing populations, especially in the Eastern and Central regions. Herring Gull counts varied dramatically and irregularly from year to year. Laughing Gulls increased along the Atlantic coast and Franklin's Gulls declined in the interior of the continen

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