USGS Science⌕ Search

SEARCH · USGS Science

Results for “Thermal Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 37 records · Page 2Linked to original sources
USGS2020

The assessment and remediation of mercury contaminated sites: A review of current approaches

Remediation of mercury (Hg) contaminated sites has long relied on traditional approaches, such as removal and containment/capping. Here we review contemporary practices in the assessment and remediation of industrial-scale Hg contaminated sites and discuss recent advances. Significant improvements have been made in site assessment, including the use of XRF to rapidly identify the spatial extent of contamination, Hg stable isotope fractionation to identify sources and transformation processes, and solid-phase characterization (XAFS) to evaluate Hg forms. The understanding of Hg bioavailability for methylation has been improved by methods such as sequential chemical extractions and porewater measurements, including the use of diffuse gradient in thin-film (DGT) samplers. These approaches have shown varying success in identifying bioavailable Hg fractions and further study and field applications are needed. The downstream accumulation of methylmercury (MeHg) in biota is a concern at many contaminated sites. Identifying the variables limiting/controlling MeHg production—such as bioavailable inorganic Hg, organic carbon, and/or terminal electron acceptors (e.g. sulfate, iron) is critical. Mercury can be released from contaminated sites to the air and water, both of which are influenced by meteorological and hydrological conditions. Mercury mobilized from contaminated sites is predominantly bound to particles, highly correlated with total sediment solids (TSS), and elevated during stormflow. Remediation techniques to address Hg contamination can include the removal or containment of Hg contaminated materials, the application of amendments to reduce mobility and bioavailability, landscape/waterbody manipulations to reduce MeHg production, and food web manipulations through stocking or extirpation to reduce MeHg accumulated in desired species. These approaches often rely on knowledge of the Hg forms/speciation at the site, and utilize physical, chemical, thermal and biological methods to achieve remediation goals. Overall, the complexity of Hg cycling allows many different opportunities to reduce/mitigate impacts, which creates flexibility in determining suitable and logistically feasible remedies.

Science of the Total Environment↗
USGS2001

Design and performance of a rugged standard operative temperature thermometer for avian studies

The lack of a truly satisfactory sensor which can characterize the thermal environment at the spatial scale experienced by small endotherms has hindered study of their thermoregulatory behavior. We describe a general design for a rugged, easily constructed sensor to measure standard operative temperature, Tes. We present specific designs for adult dark-eyed juncos (Junco hyemalis) and hatchling mallards (Anas platyrhynchos). Sensor response was stable and repeatable (??1.4%) over the course of several months. Over the range of conditions for which validation data were available (variable air temperature and wind with negligible net radiation), sensors predicted the mean net heat production of live animals to within ??0.023W (equivalent to ??1??C at Tes= 15??C). The main limit on accuracy was scatter in the data on metabolism and evaporative water loss in live animals. These sensors are far more rugged and easily constructed than the heated taxidermic mounts previously used to measure Tes. These characteristics facilitate the use of significant numbers of sensors in thermal mapping studies of endotherms. ?? 2001 Elsevier Science Ltd. All rights reserved.

Journal of Thermal Biology↗
USGS2000

Response of hatchling and yearling turtles to thermal gradients: Comparison of Chelydra serpentina and Trachemys scripta

In laboratory tests, young Chelydra serpentina and Trachemys scripta altered their distribution in the presence of a temperature gradient. Selection of temperatures in the gradient for hatchlings and yearlings showed that body temperatures ( T b s) of C. serpentina were lower than T. scripta , but the difference was insignificant. Relatively low T b s could allow greater activity range and reduced metabolic maintenance cost for C. serpentina , which seldom leaves water.

Journal of Thermal Biology↗
USGS2000

Statistical and procedural issues in the use of heated taxidermic mounts

Studies using mounts have an inherently nested error structure; calibration and standardization should use the appropriate procedures and statistics. One example is that individual mount differences are nested within morphological factors related to species, age, or gender; without replication, mount differences may be confused with differences due to morphology. Also, the sensitivity of mounts to orientation to wind or sun is nested within mount; without replication, inadvertent variation in mount positioning may be confused with differences among mounts. Data on heat loss from a of 1-day-old mallard duckling mount are used to illustrate orientation sensitivity.

Journal of Thermal Biology↗
USGS2013

Thermal sensitivity of immune function: evidence against a generalist-specialist trade-off among endothermic and ectothermic vertebrates

Animal body temperature (Tbody) varies over daily and annual cycles, affecting multiple aspects of biological performance in both endothermic and ectothermic animals. Yet a comprehensive comparison of thermal performance among animals varying in Tbody (mean and variance) and heat production is lacking. Thus, we examined the thermal sensitivity of immune function (a crucial fitness determinant) in Vertebrata, a group encompassing species of varying thermal biology. Specifically, we investigated temperature-related variation in two innate immune performance metrics, hemagglutination and hemolysis, for 13 species across all seven major vertebrate clades. Agglutination and lysis were temperature dependent and were more strongly related to the thermal biology of species (e.g., mean Tbody) than to the phylogenetic relatedness of species, although these relationships were complex and frequently surprising (e.g., heterotherms did not exhibit broader thermal performance curves than homeotherms). Agglutination and lysis performance were positively correlated within species, except in taxa that produce squalamine, a steroidal antibiotic that does not lyse red blood cells. Interestingly, we found the antithesis of a generalist-specialist trade-off: species with broader temperature ranges of immune performance also had higher peak performance levels. In sum, we have uncovered thermal sensitivity of immune performance in both endotherms and ectotherms, highlighting the role that temperature and life history play in immune function across Vertebrata.

American Naturalist↗
USGS2017

Envisioning, quantifying, and managing thermal regimes on river networks

Water temperatures fluctuate in time and space, creating diverse thermal regimes on river networks. Temporal variability in these thermal landscapes has important biological and ecological consequences because of nonlinearities in physiological reactions; spatial diversity in thermal landscapes provides aquatic organisms with options to maximize growth and survival. However, human activities and climate change threaten to alter the dynamics of riverine thermal regimes. New data and tools can identify particular facets of the thermal landscape that describe ecological and management concerns and that are linked to human actions. The emerging complexity of thermal landscapes demands innovations in communication, opens the door to exciting research opportunities on the human impacts to and biological consequences of thermal variability, suggests improvements in monitoring programs to better capture empirical patterns, provides a framework for suites of actions to restore and protect the natural processes that drive thermal complexity, and indicates opportunities for better managing thermal landscapes.

Washington↗
USGS1990

Chemistry and palynology of carbon seams and associated rocks from the Witwatersrand goldfields, South Africa

Carbon seams in the Witwatersrand System of South Africa host some of the richest gold concentrations in the world. A study of the microscopic characteristics in thin sections and acid residues, and of the chemical and physical nature of the carbon-bearing phases, was undertaken to gain some understanding of the biological precursors and thermal changes that have occurred since the seams were buried. The HCl HF acid-resistant organic tissues in this Early Proterozoic coal are filamentous and spherical, which are typical morphologies for microorganisms. The tissues are carbonized black as would be expected for metamorphic rocks, so usual palynological techniques were of limited use. Therefore, the chemical and physical nature of the organic remains was studied by H C "> HC ratios, X-ray diffraction (XRD), 13 C nuclear magnetic resonance (NMR), reductive chemistry, crosspolarization/magic angle spinning NMR (CP/MAS), and electron spin resonance (ESR). The H C "> HC ratios of the samples examined are similar to those of semi-anthracite and petroleum cokes from delayed cokers. XRD shows graphite is not present and that the gold is in elemental form, not chemically bound or intercalated between carbon planes. NMR shows that both aromatic and paraffinic carbons are present. Integration of the carbon NMR spectra suggests that 80% of the carbon is sp 2 -hybridized and 20% is sp 3 -hybridized. Reductive chemistry shows that the benzenoid entities are larger than common polynuclear aromatic hydrocarbons such as perylene and decacyclene. Dipolar dephasing CP/MAS NMR suggests the presence of two types of paraffinic carbons, a rigid methylene group and a rotating methyl group. The narrowing of the ESR linewidth between room temperature and 300°C shows that the materials examined have not previously been subjected to temperatures as high as 300°C.

Witwatersrand goldfields↗
USGS2020

A weight-of-evidence approach for defining thermal sensitivity in a federally endangered species

1. Managing for threatened and endangered species under changing environmental conditions is a challenge faced by resource managers worldwide. Lack of basic knowledge of the biology and habitat requirements of these species can contribute to this difficulty, but is confounded by the limitations of working with rare (i.e. few individuals) species or unrefined methods for evaluating stress. 2. A weight of evidence approach was used to evaluate the thermal biology of the federally endangered dwarf wedgemussel ( Alasmidonta heterodon ), utilizing cumulative results from multiple experimental assessments, co-occurring species, and their host fish to begin defining thermal limits and optimal conditions for the species. 3. Results suggest that dwarf wedgemussel and its host fish are thermally sensitive species compared to other Atlantic-slope mussels, with lower critical thermal maximum and selection of reduced temperatures during choice experiments. 4. Physiological studies resulted in lack of statistical significance primarily due to low power which was a function of sample size, one unavoidable problem when studying rare species. Given these limitations, thermal choice and CTM may be more useful endpoints than physiological processes such as clearance and respiration rates when dealing with sample size limitations. 5. These results suggest that management strategies that avoid exposing dwarf wedgemussel and its thermally sensitive host fish to extreme temperatures could be important for species conservation.

New Jersey, Pennsylvania↗
USGS1993

Thermal stratification of dilute lakes - evaluation of regulatory processes and biological effects before and after base addition: effects on brook trout habitat and growth

Addresses the significance of changes in summer thermal stratification patterns of Adirondack lakes affected by acidification to cold-water fish populations inhabiting these sensitive lakes . Brook trout Salvelinus fontinalis is the primary cold-water fish species indigenous to acid-sensitive lakes in the Adirondack region of N New York State; the ability of these lakes to sustain this important sport species is highly dependent on the availability of adequate summer habitat, consisting of cool, well-oxygenated water. Brook trout populations presently most susceptible to negative effects from acidification-induced increases in transparency and consequent reductions in preferred thermal habitat occur primarily in shallow, low-color lakes that are marginally acidified and either weakly stratified or strongly stratified with anoxic hypolimnia. Significant improvements in brook trout thermal habitat could be achieved in these lakes by reducing acidity levels, eg by liming.

New York↗
USGS1998

Water quality, hydrology, and invertebrate communities of three remnant wetlands in Missouri, 1995-97

This report presents the results of a study conducted by the U.S. Geological Survey in cooperation with the Missouri Department of Natural Resources from December 1995 through May 1997 to describe the water quality, hydrologic, and invertebrate characteristics of three remnant wetlands. These data may be used to help develop selected water-quality standards for wetlands in Missouri. Wetlands monitored in this study include Spile Lake, Vernon County; Little Bean Marsh, Platte County; and Forker Oxbow, Linn County, Missouri. Extremes in physicochemical properties in these wetlands were greatly affected by thermal stratification, hydrologic fluctuations, biological activity, and ice formation. The wetlands had dissolved-oxygen concentrations below the 5-milligrams-per-liter State water-quality standard from 40 to 60 percent of a selected 1-year period, corresponding to periods of thermal stratification. Hydrologic fluctuations were common as the water-surface elevation changes in these systems ranged up to 12 feet during the course of the study. Photosynthesis and respiration are likely causes of diurnal fluctuations in pH and dissolved oxygen throughout the study period, but particularly in the summer months. Periods of ice formation were short lived in the wetlands, but corresponded with maximum values of specific conductance and dissolved oxygen in all three systems. Analyses of invertebrate results using the Jaccard Coefficient of Community Similarity indicated mixed results. Woody snag sample results showed little similarities between sites, while sweep net sample results indicated similarities existed. Most of the families detected at these sites are considered organic tolerant as indicated by the Hilsenhoff Biotic Index. Analysis of the dominant taxon indicates that one or two invertebrate families that are tolerant to organic enrichment generally dominate the wetlands. The hydrologic, water quality, and invertebrate information analyzed in this study indicate that while there are similarities among wetlands, these are unique systems. The statistical comparisons between water-quality constituents in wetlands and streams indicate dissimilarities are common. Including the presence of thermal stratification in these wetlands, the exclusions and modifications in State standards that are applied to lakes and reservoirs also may be applicable.

Missouri↗
USGS2023

Calibration and validation for the Surface Biology and Geology (SBG) mission concept: Recommendations for a multi-sensor system for imaging spectroscopy and thermal imagery

The primary objective of the National Aeronautics and Space Administration (NASA) Surface Biology and Geology (SBG) mission is to measure biological, physical, chemical, and mineralogical features of the Earth's surface, realizing a key conceptual component of the envisioned NASA Earth System Observatory (ESO). SBG is planned to launch as a two-platform mission in the late 2020s, the first of the ESO satellites. Targeted science and applications objectives based on observations of the Earth's SBG helped to define the mission architecture and instrument capabilities for the SBG mission concept. These objectives further drove the need for enabling change detection and trending of surface biological and geological features. These needs implied fundamental calibration goals to achieve the necessary science data quality characteristics. To meet those goals, calibration and validation pre-launch and on-orbit methods formed a basis of the calibration and validation concept, including the combined use of on-board references, vicarious techniques, and routine lunar imaging. International collaboration with space agencies in other countries, an important feature of the recommended SBG mission architecture, uncovered and emphasized the need for inter-calibration techniques that underscored the importance of collaborative instrument characterization data sharing and the use of common calibration references that are International System of Units (SI) traceable in pre-launch and post-launch on orbit calibration mission phases. International collaboration through the use of terrestrial and aquatic networks on six continents for vicarious calibration and validation activities will further assure necessary science data quality while in orbit.

JGR Biogeosciences↗
USGS2015

Climate-induced changes in lake ecosystem structure inferred from coupled neo- and paleoecological approaches

Over the 20th century, surface water temperatures have increased in many lake ecosystems around the world, but long-term trends in the vertical thermal structure of lakes remain unclear, despite the strong control that thermal stratification exerts on the biological response of lakes to climate change. Here we used both neo- and paleoecological approaches to develop a fossil-based inference model for lake mixing depths and thereby refine understanding of lake thermal structure change. We focused on three common planktonic diatom taxa, the distributions of which previous research suggests might be affected by mixing depth. Comparative lake surveys and growth rate experiments revealed that these species respond to lake thermal structure when nitrogen is sufficient, with species optima ranging from shallower to deeper mixing depths. The diatom-based mixing depth model was applied to sedimentary diatom profiles extending back to 1750 AD in two lakes with moderate nitrate concentrations but differing climate settings. Thermal reconstructions were consistent with expected changes, with shallower mixing depths inferred for an alpine lake where treeline has advanced, and deeper mixing depths inferred for a boreal lake where wind strength has increased. The inference model developed here provides a new tool to expand and refine understanding of climate-induced changes in lake ecosystems.

Ecology↗
USGS2021

Thermal stability of an adaptable, invasive ectotherm: Argentine giant tegus in the Greater Everglades ecosystem, USA

Invasive species globally threaten biodiversity and economies, but the ecophysiological mechanisms underlying their success are often understudied. For those alien species that also exhibit high phenotypic plasticity, such as habitat generalists, adaptations in response to environmental pressures can take place relatively quickly. The Argentine giant tegu ( Salvator merianae ; tegu) is a large omnivorous lizard from South America that is prolific, long-lived, vagile, and highly adaptable to disturbed environments. They are well suited to the climate of southeastern United States, introduced to several disjunct areas, including the Everglades, where their voracious appetite threatens native wildlife. Tegus undergo winter dormancy (hibernation) to cope with colder temperatures, and while this behavior may facilitate invasion into more temperate regions, it may also present management opportunities. We studied the thermal habits of wild S. merianae within their invaded range in southern Florida, USA. We used radiotelemetry and trail cameras to verify aboveground behaviors, and temperature dataloggers to monitor surface (sun-exposed [ T e ] and shaded [ T s ]), ambient ( T a ), subsurface ground ( T h ), and internal body ( T b ) temperatures of a population of free-ranging tegus over several seasons. We evaluated thermal and behavioral data and identified five biologically significant periods: pre-hibernal, hibernal, cold snaps, hibernal-basking, and post-hibernal. We found tegus maintained thermal stability throughout the hibernal period, frequently at temperatures above available thermal microhabitats. Variation in T b was lowest during hibernation and cold snaps and was less variable than subsurface temperatures despite not leaving their hibernaculum. Hibernal ingress and egress were best predicted by temperature differentials between exposed soil and ambient daily mean temperatures ( T e − T a ) and daylength. Though we detected no sex differences, larger animals started hibernation sooner, stayed in hibernation longer, and retained higher fat stores over the study period. One individual did not hibernate, representing only the second record of this behavior. Despite limitations of these descriptive data, this is the first study finely detailing T b of a population of wild, free-ranging S. merianae over multiple biologically significant time periods and to associate T b with thermal habitats within its invasive range. Tegus' apparent ability for thermal stability expands the adaptability breadth of this species and underscores the invasion threat.

Florida↗
USGS2013

Water temperature and baseflow discharge of streams throughout the range of Rio Grande cutthroat trout in Colorado and New Mexico—2010 and 2011

This study characterized the thermal regime in a number of Colorado and New Mexico streams that contain populations of Rio Grande cutthroat trout (Oncorhynchus clarkii virginalis) and had no previous record of continual temperature records. When compared to Colorado’s water temperature criteria (Cold Tier 1), a portion of these populations appeared to be at risk from elevated stream temperatures, as indicated by exceedance of both acute (17–22 percent) and chronic (2–9 percent) water quality metrics. Summer water temperature profiles recorded at sites within current Rio Grande cutthroat trout habitat indicated that although the majority of currently occupied conservation streams have temperatures that fall well below these biologically based acute and chronic thermal thresholds, several sites may be at or approaching water temperatures considered stressful to cutthroat trout. Further, water temperatures should be considered in decisions regarding the current and future thermal suitability of potential Rio Grande cutthroat trout restoration sites. Additionally, baseflow discharge sampling indicated that a majority of the sampled stream segments containing Rio Grande cutthroat trout have flows less than 1.0 cubic feet per second (cfs) in both 2010 (74 percent) and 2011 (77 percent). The relative drought sensitivity of these low baseflow streams containing Rio Grande cutthroat trout could be further evaluated to assess their probable sustainability under possible future drought conditions.

Colorado;New Mexico;Texas↗
USGS2023

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California↗
USGS2018

Thermal tolerance limits of the Chinese mystery snail (Bellamya chinensis): Implications for management

The Chinese mystery snail, Bellamya chinensis (Gray, 1834) is a gastropod native to East Asia and is considered an invasive species in North America where its impacts on native species and ecosystems are not well understood. Scientific literature describing its biology and life history are sparse. Thermal tolerance limits, or the maximum and minimum temperature under which a species can survive, are key to identifying the potential geographical range of a species. The ability of managers to control invasive species is directly impacted by the thermal tolerance limits of a species. We attempted to identify the thermal tolerance limits of B. chinensis in a laboratory setting. Using a random sampling design, we exposed groups of wild-caught B. chinensis to either extreme high or low temperature treatments. We identified the upper temperature tolerance limit as between 40 and 45 °C. This result indicates some hot water management techniques may successfully prevent spread of B. chinensis among waterways. Despite exposing B. chinensis to freezing temperatures for extended periods of time we did not identify a lower temperature limit. Identifying the thermal tolerance limits of this and other invasive species informs predictions of range expansion and identification of potential prevention efforts.

American Malacological Bulletin↗
USGS2011

Effects of dams in river networks on fish assemblages in non-impoundment sections of rivers in Michigan and Wisconsin, USA

Regional assessment of cumulative impacts of dams on riverine fish assemblages provides resource managers essential information for dam operation, potential dam removal, river health assessment and overall ecosystem management. Such an assessment is challenging because characteristics of fish assemblages are not only affected by dams, but also influenced by natural variation and human-induced modification (in addition to dams) in thermal and flow regimes, physicochemical habitats and biological assemblages. This study evaluated the impacts of dams on river fish assemblages in the non-impoundment sections of rivers in the states of Michigan and Wisconsin using multiple fish assemblage indicators and multiple approaches to distinguish the influences of dams from those of other natural and human-induced factors. We found that environmental factors that influence fish assemblages in addition to dams should be incorporated when evaluating regional effects of dams on fish assemblages. Without considering such co-influential factors, the evaluation is inadequate and potentially misleading. The role of dams alone in determining fish assemblages at a regional spatial scale is relatively small (explained less than 20% of variance) compared with the other environmental factors, such as river size, flow and thermal regimes and land uses jointly. However, our results do demonstrate that downstream and upstream dams can substantially modify fish assemblages in the non-impoundment sections of rivers. After excluding river size and land-use influences, our results clearly demonstrate that dams have significant impacts on fish biotic-integrity and habitat-and-social-preference indicators. The influences of the upstream dams, downstream dams, distance to dams, and dam density differ among the fish indicators, which have different implications for maintaining river biotic integrity, protecting biodiversity and managing fisheries.

Wisconsin and Michigan↗
USGS2020

Mapping the thermal landscape of the Upper Mississippi River

Temperature has a fundamental influence on physical, chemical and biological processing in aquatic ecosystems. River temperatures respond to a diverse array of drivers including air temperature, streamflow, and thermal inputs, but the physical template has been shown to play a significant role in structuring spatial and temporal variation in water temperature. How these factors interact to affect water temperature in complex floodplain river habitats such as those present in the Upper Mississippi River System (UMRS) is not well-studied. We used a combination of airborne thermal imagery and continuous temperature loggers deployed across aquatic area types to evaluate spatial and temporal patterns in water temperature in Navigation Pool 8 during the summer and fall of 2017. The mid-wave infrared thermal camera available for this study is not commonly used for thermal imagery acquisition over water, so we discuss accommodations that were made to account for potential interferences and describe considerations for future users interested in using the technology. We quantified thermal metrics from imagery and continuous loggers (e.g., mean, coefficient of variation, range) and compared those to hydrogeomorphic variability across aquatic areas using a Geographic Information System (GIS) dataset. Our findings showed that both temporal and spatial temperature patterns were linked to variation in depth and connectivity of aquatic areas across the pool. Despite some of the technical challenges associated with acquiring this imagery, the method shows promise for characterizing spatial variation in surface temperatures in the UMRS associated with complex physical features such as habitat rehabilitation and enhancement projects.

Iowa, Illinois, Minnesota, Wisconsin↗