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At least 37 records · Page 2Linked to original sources
USGS2003

Wolves: Behavior, ecology, and conservation

Wolves are some of the world's most charismatic and controversial animals, capturing the imaginations of their friends and foes alike. Highly intelligent and adaptable, they hunt and play together in close-knit packs, sometimes roaming over hundreds of square miles in search of food. Once teetering on the brink of extinction across much of the United States and Europe, wolves have made a tremendous comeback in recent years, thanks to legal protection, changing human attitudes, and efforts to reintroduce them to suitable habitats in North America. As wolf populations have rebounded, scientific studies of them have also flourished. But there hasn't been a systematic, comprehensive overview of wolf biology since 1970. In Wolves , many of the world's leading wolf experts provide state-of-the-art coverage of just about everything you could want to know about these fascinating creatures. Individual chapters cover wolf social ecology, behavior, communication, feeding habits and hunting techniques, population dynamics, physiology and pathology, molecular genetics, evolution and taxonomy, interactions with nonhuman animals such as bears and coyotes, reintroduction, interactions with humans, and conservation and recovery efforts. The book discusses both gray and red wolves in detail and includes information about wolves around the world, from the United States and Canada to Italy, Romania, Saudi Arabia, Israel, India, and Mongolia. Wolves is also extensively illustrated with black and white photos, line drawings, maps, and fifty color plates.

Book↗
USGS2023

Wildlife ecological risk assessment in the 21st century: Promising technologies to assess toxicological effects

Despite advances in toxicity testing and development of new approach methodologies (NAMs) for hazard assessment, the ecological risk assessment (ERA) framework for terrestrial wildlife (i.e., air-breathing amphibians, reptiles, birds, and mammals) has remained unchanged for decades. While survival, growth, and reproductive endpoints derived from whole animal toxicity tests are central to hazard assessment, non-standard measures of biological effects at multiple levels of biological organization (e.g., molecular, cellular, tissue, organ, organism, population, community, ecosystem) have potential to enhance the relevance of prospective and retrospective wildlife ERAs. Other factors (e.g., indirect effects of contaminants on food supplies and infectious disease processes) are influenced by toxicants at individual, population, and community levels, and need to be factored into chemically-based risk assessments to enhance the “eco” component of ERAs. Regulatory and logistical challenges often relegate such non-standard endpoints and indirect effects to post-registration evaluations of pesticides and industrial chemicals, and contaminated site evaluations. While NAMs are being developed, to date their applications in ERAs focused on wildlife have been limited. No single magic tool or model will address all uncertainties in hazard assessment. Modernizing wildlife ERAs will likely entail combinations of laboratory and field-derived data at multiple levels of biological organization, knowledge collection solutions (e.g., systematic review, adverse outcome pathway frameworks), and inferential methods that facilitate integrations and risk estimations focused on species, populations, interspecific extrapolations, and ecosystem services modeling, with less dependence on whole animal data and simple hazard ratios.

Integrated Environmental Assessment and Management↗
USGS1993

In my experience: Mitochondrial DNA in wildlife taxonomy and conservation biology: Cautionary notes

Several recently published papers discussed the importance of systematics (the study of evolutionary and genetic relationships among organisms) and taxonomy (the naming and classification of organisms) for managing wildlife (Ryder 1986, Avise 1989, Amato 1991, O'Brien and Mayr 1991, Dowling et al. 1992), Often, classification below the species level is needed; for example, the Endangered Species Act of 1973 applies to local populations and subspecies as well as species. Conservation efforts may focus below the species level because of concerns about the fitness, evolutionary potentials, and locally adapted gene pools of natural populations (Soulé 1986, Hedrick and Milller 1992). This can be considered the genetic component of biodiversity. Recent systematic studies with wildlife management applications have used modern molecular genetic methods. Analyses of a specific molecular marker, mitochondrial DNA (mtDNA), have been used in many of these studies (e.g., Shields and Wilson 1987, Avise and Nelson 1989, O'Brien et al. 1990, Wayne and Jenks 1991, Cronin 1992), However, there are limitations to the use of mtDNA in systematics (e.g., Overden et al., 1987, Pamilo and Nei 1988, Dowling et al. 1992). In my experience as a geneticist working with wildlife biologists, I have found a need for clarification of the use and limitations of modern molecular genetics. I specifically discuss the limitations of mtDNA data in systematic assessments of wildlife at and below the species level.

Wildlife Society Bulletin↗
USGS2018

Bend-scale geomorphic classification and assessment of the Lower Missouri River from Sioux City, Iowa, to the Mississippi River for application to pallid sturgeon management

Management actions intended to increase growth and survival of pallid sturgeon ( Scaphirhynchus albus ) age-0 larvae on the Lower Missouri River require a comprehensive understanding of the geomorphic habitat template of the river. The study described here had two objectives relating to where channel-reconfiguration projects should be located to optimize effectiveness. The first objective was to develop a bend-scale (that is, at the scale of individual bends, defined as “cross-over to cross-over”) geomorphic classification of the Lower Missouri River to help in the design of monitoring and evaluation of such projects. The second objective was to explore whether geomorphic variables could provide insight into varying capacities of bends to intercept drifting larvae. The bend-scale classification was based on geomorphic and engineering variables for 257 bends from Sioux City, Iowa, to the confluence with the Mississippi River near St. Louis, Missouri. We used k-means clustering to identify groupings of bends that shared the same characteristics. Separate 3-, 4-, and 6-cluster classifications were developed and mapped. The three classifications are nested in a hierarchical structure. We also explored capacities of bends to intercept larvae through evaluation of linear models that predicted persistent sand area or catch per unit effort (CPUE) of age-0 sturgeon as a function of the same geomorphic variables used in the classification. All highly ranked models that predict persistent sand area contained mean channel width and standard deviation of channel width as significant variables. Some top-ranked models also included contributions of channel sinuosity and density of navigation structures. The sand-area prediction models have r-squared values of 0.648–0.674. In contrast, the highest-ranking CPUE models have r-squared values of 0.011–0.170, indicating much more uncertainty for the biological response variable. Whereas the persistent sand model documents that physical processes of transport and accumulation are systematic and predictable, the poor performance of the CPUE models indicate that additional processes will need to be considered to predict biological transport and accumulation.

Iowa, Missouri↗
USGS1980

Biological premonitors of earthquakes: A validation study

For the greatest ultimate usefulness to society, the two most important facets of earthquake prediction are (1) a fundamental scientific understanding of the earthquake-triggering process and (2) the identification of reliable and measurable premonitors. A possible approach to both of these problem areas, and one that has received almost no systematic attention in U.S. seismological studies, is to examine the supposed sensitivity of biological organisms to one or more of the geophysical changes that precede earthquakes.

Open-File Report↗
USGS2013

Conservation status of freshwater gastropods of Canada and the United States

This is the first American Fisheries Society conservation assessment of freshwater gastropods (snails) from Canada and the United States by the Gastropod Subcommittee (Endangered Species Committee). This review covers 703 species representing 16 families and 93 genera, of which 67 species are considered extinct, or possibly extinct, 278 are endangered, 102 are threatened, 73 are vulnerable, 157 are currently stable, and 26 species have uncertain taxonomic status. Of the entire fauna, 74% of gastropods are imperiled (vulnerable, threatened, endangered) or extinct, which exceeds imperilment levels in fishes (39%) and crayfishes (48%) but is similar to that of mussels (72%). Comparison of modern to background extinction rates reveals that gastropods have the highest modern extinction rate yet observed, 9,539 times greater than background rates. Gastropods are highly susceptible to habitat loss and degradation, particularly narrow endemics restricted to a single spring or short stream reaches. Compilation of this review was hampered by a paucity of current distributional information and taxonomic uncertainties. Although research on several fronts including basic biology, physiology, conservation strategies, life history, and ecology are needed, systematics and curation of museum collections and databases coupled with comprehensive status surveys (geographic limits, threat identification) are priorities.

Fisheries↗
USGS2007

Revision of the characters of Centrolenidae (Amphibia: Anura: Athesphatanura), with comments on its taxonomy and the description of new taxa of glassfrogs

Anurans of the family Centrolenidae are a diverse clade of arboreal frogs distributed across tropical America. Knowledge of their taxonomy, systematics, ecology, behavior, morphology, and other evolutionary aspects of their biology is deficient. Relationships among centrolenid species remain largely unresolved, with no satisfactory phylogenetic hypothesis, and none of the current genera has compelling evidence of monophyly. Further, understanding the phylogeny of glassfrogs is constrained by species-level taxonomic problems, including incorrect description of characters, incomplete analyses of intraspecific variation, and lack of appreciation of species diversity. Herein, we define and analyze the 23 characters that are useful, in combination, in diagnosing centrolenid species, and thereby provide a reference for the use of future workers. We propose revised classifications for the parietal and visceral peritoneal pigmentation, liver form and coloration of its associated hepatic peritoneum, nuptial excrescences, and hand ornamentation. We comment on the generic and species-level taxonomy of Centrolenidae, proposing the recognition of a new genus and describing a new species from Ecuador. We treat Hyla ocellifera Boulenger as a synonym of Centrolene prosoblepon (Boettger), Hyalinobatrachium cardiacalyptum McCranie & Wilson as a synonym of Hyalinobatrachium chirripoi (Taylor), and Hyalinobatrachium crybetes McCranie and Wilson as a synonym of Hyalinobatrachium colymbiphyllum (Taylor). We also present an annotated list of the species of glassfrogs from the Republic of Ecuador with some distributional remarks.

Zootaxa↗
USGS1885

Sketch of paleobotany

To understand the true force of the facts of paleobotany as arguments for geology it is essential that their full biologic significance be grasped. It has therefore been deemed proper, in this introduction to the several tabular and systematic statements which will make up the bulk of the volume and bear chiefly upon the geological aspect of the subject, to consider certain of the more important biologic questions, in addition to the specially geologic ones, and to discuss, from an historical and developmental standpoint, some of the leading problems of modern phytology.

Report↗
USGS2001

Seabird tissue archival and monitoring project: Protocol for collecting and banking seabird eggs

Archiving biological and environmental samples for retrospective analysis is a major component of systematic environmental monitoring. The long-term storage of carefully selected, representative samples in an environmental specimen bank is an important complement to the real-time monitoring of the environment. These archived samples permit: The use of subsequently developed innovative analytical technology that was not available at the time the samples were archived, for clear state-of-art identification an~ quantification of analytes of interest, The identification and quantification of analytes that are of subsequent interest but that were not of interest at the time the samples were archived, and The comparison of present and past analytical techniques and values, providing continued credibility of past analytical values, and allowing flexibility in environmental monitoring programs. Seabirds, including albatrosses, pelicans, cormorants, terns, kittiwakes, murres, guillemots, and puffins spend most of their lives at sea and have special adaptations for feeding in the marine environment, including the ability to excrete the excess salt obtained from ingesting seawater. Many species nest in dense groups (colonies) on steep, precipitous sea-cliffs and headlands. Seabirds are long-lived and slow to mature. They occupy high positions in the marine food web and are considered sensitive indicators for the marine environment (prey includes krill, small fish, and squid). Breeding success, timing of nesting, diets, and survival rates may provide early indications of changing environmental conditions (e.g., see Hatch et aI., 1993). Chemical analysis of seabird tissues, including egg contents, can be particularly useful in determining whether contaminants (and potential biological effects) associated with human industrial activities, such as offshore petroleum and mineral exploration and development, are accumulating in marine environments. The collection and archival of seabird tissues over a period of several years will be a resource for future analyses, providing samples that can be used to determine historical baseline contaminant levels.

Report↗
USGS2025

The future of biocontrol in the Anthropocene: A review of climate change impacts on biocontrol agents and their hosts

Biological control, the practice of using one species (biocontrol agent) to control the population of another (a host or prey species, hereafter target), can be a successful method to reduce pest species in agricultural and natural systems worldwide. Successful biocontrol agents often share a deep evolutionary history with their targets that results in high target specificity and synchronized phenology. However, with rapidly changing climatic conditions, users of biocontrol agents have questioned how climate change will affect both well-established and more recent biological control relationships. Using a meta-analysis of data collected from a systematic literature review, we evaluated the evidence for the impact of changing temperatures on the efficacy of biocontrol agents and corresponding responses in their targets. Overall, most studies of climate change impacts on biocontrol agents take place in the laboratory and focus on arthropod agents that are parasitoids. Results from our meta-analysis reveal that changes in temperature are projected to impact biocontrol agents and their targets similarly, with no overall significant changes to biocontrol agent or target performance. However, our results also show that temperature responses vary widely across study systems, as illustrated by case studies showing both positive, neutral, and negative effects of temperature on biocontrol agent efficacy, as well as variation in responses across the three core biological control measures of success: survival, reproduction, and efficacy. Our work highlights important knowledge gaps including how climate change will affect both biocontrol agents and their targets simultaneously. Additionally, we find that most current studies of climate impacts examined temperature relationships, predominantly of agricultural biocontrol agents. Increasing the breadth of studies is crucial for understanding the potential for climate change to affect the success of current and future biological control programs.

Ecological Applications↗
USGS2005

Streamflow, water-quality, and biological data for three tributaries to Lake Houston near Houston, Texas, 2002-04

During 2002-04 the U.S. Geological Survey, in cooperation with the Houston-Galveston Area Council and the Texas Commission on Environmental Quality, conducted a systematic monitoring study on Lake Creek, Peach Creek, and Caney Creek near Houston, Texas, to assess the current water-quality and biological conditions in the three tributaries to Lake Houston. Streamflow and water-quality data (chloride and sulfate, nutrients, biochemical oxygen demand, phytoplankton, indicator bacteria, pesticides, and suspended sediment) were collected at 11 sites, and fish and benthic-macroinvertebrate data were collected at eight of the 11 sites. Graphical comparisons of concentration data for eight water-quality constituents by watershed indicate relatively large differences in concentration distribution among all three watersheds for nitrite plus nitrate nitrogen (medians: Lake, 0.20; Peach, 0.14; and Caney, 0.32 mg/L). Graphical comparisons of these data by season show consistency in distribution of constituent concentrations. The distributions of chlorophyll-a in summer and E. coli bacteria in winter each contain a few relatively large concentrations. Fifty-six species of fish from 15 major families were collected during the study. For all sites except one on Lake Creek, the majority of fish collected were sunfish; minnows dominated at the one Lake Creek site. Invertivores (mostly sunfish and minnows) made up more than 65 percent of the trophic structure, omnivores were the next largest percentage, and piscivores the smallest percentage. Ecoregion-specific index of biotic integrity (ECO-IBI) scores (averages of samples) for three of four upstream Lake Creek sites indicate intermediate aquatic life use, and the most downstream site, high aquatic life use. ECO-IBI scores for the Peach Creek and Caney Creek sites indicate high aquatic life use. The maximum number of aquatic-insect taxa (51) were collected at a site on Peach Creek near Cleveland, and the minimum number of aquatic-insect taxa (17) were collected at site on Caney Creek near New Caney. The benthic-macroinvertebrate index of biotic integrity (B-IBI) scores (averages of samples) for the three upstream Lake Creek sites indicate intermediate aquatic life use, and the B-IBI score for the most downstream site indicates high aquatic life use. B-IBI scores for the Peach Creek sites, in downstream order, are exceptional and high; and scores for the Caney Creek sites, in downstream order, are high and intermediate.

Texas↗
USGS2026

Structural evolution of iron coordination in proteins across Earth’s oxygenation history

Protein metal-binding sites support essential biological functions shaped by protein fold, subunit interactions, and cofactor chemistry. Because these sites encode both biochemical function and environmental constraint, they offer a route to connect protein evolution with changes in Earth’s surface environment through time. Of particular interest is iron (Fe), the most widely used metal in biology and a cofactor central to both anaerobic and aerobic metabolism. Here, we systematically compare the immediate chemical environments of functionally essential Fe-binding sites in three-dimensional protein structures to test whether Fe coordination spheres differ across oxygen contexts. Using a curated dataset of experimentally determined structures, we identify a clear shift in the local chemistry of Fe-binding environments from anaerobic to aerobic proteins. Aerobic Fe sites are significantly more hydrophilic than anaerobic ones, and amino-acid composition analyses show reduced cysteine use in aerobic Fe-binding neighborhoods. These patterns suggest that as Earth’s surface environments became more oxygenated, proteins retained Fe as a core redox metal while reconfiguring local coordination chemistry in ways less vulnerable to oxidative damage. More broadly, this study introduces and applies the Coordination Sphere Analysis and Comparison (CSAC) workflow, an open and archived Python workflow for extracting local metal-binding environments from structure datasets, providing a framework for linking metalloprotein structure to evolutionary and geobiological transitions across Earth history.

Discover Life↗
USGS2006

An evaluation of a reagentless method for the determination of total mercury in aquatic life

Multiple treatment (i.e., drying, chemical digestion, and oxidation) steps are often required during preparation of biological matrices for quantitative analysis of mercury; these multiple steps could potentially lead to systematic errors and poor recovery of the analyte. In this study, the Direct Mercury Analyzer (Milestone Inc., Monroe, CT) was utilized to measure total mercury in fish tissue by integrating steps of drying, sample combustion and gold sequestration with successive identification using atomic absorption spectrometry. We also evaluated the differences between the mercury concentrations found in samples that were homogenized and samples with no preparation. These results were confirmed with cold vapor atomic absorbance and fluorescence spectrometric methods of analysis. Finally, total mercury in wild captured largemouth bass (n = 20) were assessed using the Direct Mercury Analyzer to examine internal variability between mercury concentrations in muscle, liver and brain organs. Direct analysis of total mercury measured in muscle tissue was strongly correlated with muscle tissue that was homogenized before analysis (r = 0.81, p < 0.0001). Additionally, results using this integrated method compared favorably (p < 0.05) with conventional cold vapor spectrometry with atomic absorbance and fluorescence detection methods. Mercury concentrations in brain were significantly lower than concentrations in muscle (p < 0.001) and liver (p < 0.05) tissues. This integrated method can measure a wide range of mercury concentrations (0-500 ??g) using small sample sizes. Total mercury measurements in this study are comparative to the methods (cold vapor) commonly used for total mercury analysis and are devoid of laborious sample preparation and expensive hazardous waste. ?? Springer 2006.

Water, Air, & Soil Pollution↗
USGS2006

Global analyses of brachiopod faunas through the Ordovician and Silurian transition: Reducing the role of the Lazarus effect

Global analyses of 88 families and 284 genera of brachiopods from middle Ashgill, Late Ordovician, to early-middle Rhuddanian, Early Silurian, indicate that 18.6% and 12.5% of families and 51.0% and 41.3% of genera were eliminated in the first and second phases of the end-Ordovician mass extinction, respectively, with the total loss of 28.4% of families and 69.0% of genera in the crisis. New investigation demonstrates that brachiopods, at both generic and familial levels, suffered greater during the first phase than during the second phase. Four groups (victims, relicts, survivors, and new arrivals) are distinguished by their stratigraphical ranges. Generic survivors, occurring in the Kosov Province during the Hirnantian, can be split into three types with respect to their changing abundance: increasing, declining, and Lazarus taxa. Among the 88 genera that survived, numerous declining genera occurred in the Hirnantian: 16 Lazarus families and 18 Lazarus genera are provisionally known and may be regarded as end members of the declining type. Comparison of the abundance, population size, and distribution patterns of declining and Lazarus taxa shows important similarities between these two types which contribute to a better understanding of the nature of Lazarus taxa. In addition to these biological attributes, taphonomic failure and generally poor preservation, together with collecting bias and inadequate systematic data, are clearly involved. More collections will undoubtedly globally reduce the number of Lazarus taxa. A single, common refugium for end-Ordovician brachiopods probably did not exist; rather, these taxa used paleogeographically scattered locations in a range of environments for survival. ?? 2006 NRC Canada.

Canadian Journal of Earth Sciences↗
USGS2003

The high-elevation population of Mountain Plovers in Colorado

We surveyed a discrete population of Mountain Plovers ( Charadrius montanus ) in South Park, Park County, Colorado, to determine the size and relative contribution of this geographically isolated area to the global population of plovers. First, we mapped potential plover habitat within South Park based on landform and vegetation descriptors. Second, we identified occupied habitat using observations from a systematic inventory of potential habitat from 1995–1999 and from a study of breeding biology from 2000–2002. Third, we estimated breeding densities within a framework designed specifically for distance sampling. We mapped 82 750 ha of potential habitat. We recorded 2516 plover locations from which we estimated 29 176 ha of occupied habitat. We estimated densities for 14 960 ha of potential habitat. Average plover density from 2000–2002 was 7.9 ± 0.9 (SE) breeding adults km −2 , a high value compared with other sites. We calculated a population of 1187 ± 140 (SE) plovers in the distance sampling area. Assuming density in our sampling area was similar for all documented occupied habitat, we estimated the population of plovers in South Park at 2310 adults. We conclude that South Park represents a contemporarily large concentration of breeding Mountain Plovers.

The Condor↗
USGS2004

Differential parasitism of seed-feeding Cydia (Lepidoptera: Tortricidae) by native and alien wasp species relative to elevation in subalpine Sophora (Fabaceae) forests on Mauna Kea, Hawaii

Alien parasitic wasps, including accidental introductions and purposefully released biological control agents, have been implicated in the decline of native Hawaiian Lepidoptera. Understanding the potential impacts of alien wasps requires knowledge of ecological parameters that influence parasitism rates for species in their new environment. Sophora seed-feeding Cydia spp. (Lepidoptera: Tortricidae) were surveyed for larval parasitoids to determine how native and alien wasps are partitioned over an elevation gradient (2200-2800 m) on Hawaii Island, Hawaii. Parasitism rate of native Euderus metallicus (Eulophidae) increased with increased elevation, while parasitism rate by immigrant Calliephialtes grapholithae (Ichneumonidae) decreased. Parasitism by Pristomerus hawaiiensis (Ichneumonidae), origins uncertain, also decreased with increased elevation. Two other species, Diadegma blackburni (Ichneumonidae), origins uncertain, and Brasema cushmani (Eupelmidae), a purposefully introduced biological control agent for pepper weevil, did not vary significantly with elevation. Results are contrasted with a previous study of this system with implications for the conservation of an endangered bird species that feed on Cydia larvae. Interpretation of results is hindered by lack of knowledge of autecology of moths and wasps, origins, phylogeny, systematics, competitive ability, and physiological limitations of each wasp species. These factors should be incorporated into risk analysis for biological control introductions and invasive species programs. ?? 2004 Kluwer Academic Publishers.

Journal of Insect Conservation↗
USGS2025

Incidence of pollution, bioaccumulation, biomagnification, and toxic effects of per- and polyfluoroalkyl substances (PFAS) in aquatic ecosystems: A review

Per- and polyfluoroalkyl substances (PFAS) are persistently accumulated in both environmental media and biological systems, leading to significant toxicological effects. Although research on PFAS has expanded in recent years, systematic reviews on its concentration distribution in aquatic environments and biota, as well as its toxicological effects, remain scarce. Moreover, existing literature lacks systematic analyses of diverse aquatic environments and organisms. This review investigates the contamination levels of PFAS in aquatic environments. It also provides a systematic analysis of bioaccumulation in planktonic, swimming, and benthic organisms, including bioaccumulation factors (BAF), biomagnification factors (BMF), trophic magnification factors (TMF), and biota-sediment accumulation factors (BSAF), and evaluates the potential toxic effects on aquatic ecosystems. This study aims to provide theoretical support for the environmental regulation and management of PFAS. Additionally, it seeks to offer data references and potential research directions for future studies, thereby promoting the advancement of PFAS-related research and policy development.

Aquatic Toxicology↗
USGS2009

Gulf of Mexico Deep-Sea Coral Ecosystem Studies, 2008-2011

Most people are familiar with tropical coral reefs, located in warm, well-illuminated, shallow waters. However, corals also exist hundreds and even thousands of meters below the ocean surface, where it is cold and completely dark. These deep-sea corals, also known as cold-water corals, have become a topic of interest due to conservation concerns over the impacts of trawling, exploration for oil and gas, and climate change. Although the existence of these corals has been known since the 1800s, our understanding of their distribution, ecology, and biology is limited due to the technical difficulties of conducting deep-sea research. DISCOVRE (DIversity, Systematics, and COnnectivity of Vulnerable Reef Ecosystems) is a new U.S. Geological Survey (USGS) program focused on deep-water coral ecosystems in the Gulf of Mexico. This integrated, multidisciplinary, international effort investigates a variety of topics related to unique and fragile deep-sea coral ecosystems from the microscopic level to the ecosystem level, including components of microbiology, population genetics, paleoecology, food webs, taxonomy, community ecology, physical oceanography, and mapping.

Fact Sheet↗