The composition of soils, plants, and waters in the TJ Drain catchment area, Newlands Irrigation Project, Churchill County, Nevada
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Open-File Report↗
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Results for “Plant and Soil”
Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.
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Geochemistry of some rocks, mine spoils, stream sediments, soils, plants, and waters in the Western Energy Region of the conterminous United States, with sections on field studies
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Professional Paper↗
Soil-plant correlation studies for selected wetlands of the United States
No abstract available.
Book↗
The interacting roles of climate, soils, and plant production on soil microbial communities at a continental scale
Soil microbial communities control critical ecosystem processes such as decomposition, nutrient cycling, and soil organic matter formation. Continental scale patterns in the composition and functioning of microbial communities are related to climatic, biotic, and edaphic factors such as temperature and precipitation, plant community composition, and soil carbon, nitrogen, and pH. Although these relationships have been well explored individually, the examination of the factors that may act directly on microbial communities vs. those that may act indirectly through other ecosystem properties has not been well developed. To further such understanding, we utilized structural equation modeling (SEM) to evaluate a set of hypotheses about the direct and indirect effects of climatic, biotic, and edaphic variables on microbial communities across the continental United States. The primary goals of this work were to test our current understanding of the interactions among climate, soils, and plants in affecting microbial community composition, and to examine whether variation in the composition of the microbial community affects potential rates of soil enzymatic activities. A model of interacting factors created through SEM shows several expected patterns. Distal factors such as climate had indirect effects on microbial communities by influencing plant productivity, soil mineralogy, and soil pH, but factors related to soil organic matter chemistry had the most direct influence on community composition. We observed that both plant productivity and soil mineral composition were important indirect influences on community composition at the continental scale, both interacting to affect organic matter content and microbial biomass and ultimately community composition. Although soil hydrolytic enzymes were related to the moisture regime and soil carbon, oxidative enzymes were also affected by community composition, reflected in the abundance of soil fungi. These results highlight that soil microbial communities can be modeled within the context of multiple interacting ecosystem properties acting both directly and indirectly on their composition and function, and this provides a rich and informative context with which to examine communities. This work also highlights that variation in climate, microbial biomass, and microbial community composition can affect maximum rates of soil enzyme activities, potentially influencing rates of decomposition and nutrient mineralization in soils.
Ecology↗
Impact of biological soil crusts and desert plants on soil microfaunal community composition
Carbon and nitrogen are supplied by a variety of sources in the desert food web; both vascular and non-vascular plants and cyanobacteria supply carbon, and cyanobacteria and plant-associated rhizosphere bacteria are sources of biological nitrogen fixation. The objective of this study was to compare the relative influence of vascular plants and biological soil crusts on desert soil nematode and protozoan abundance and community composition. In the first experiment, biological soil crusts were removed by physical trampling. Treatments with crust removed had fewer nematodes and a greater relative ratio of bacterivores to microphytophages than treatments with intact crust. However, protozoa composition was similar with or without the presence of crusts. In a second experiment, nematode community composition was characterized along a spatial gradient away from stems of grasses or shrubs. Although nematodes generally occurred in increasing abundance nearer to plant stems, some genera (such as the enrichment-type Panagrolaimus) increased disproportionately more than others (such as the stress-tolerant Acromoldavicus). We propose that the impact of biological soil crusts and desert plants on soil microfauna, as reflected in the community composition of microbivorous nematodes, is a combination of carbon input, microclimate amelioration, and altered soil hydrology. ?? Springer Science + Business Media B.V. 2009.
Plant and Soil↗
Framework for using downscaled climate model projections in ecological experiments to quantify plant and soil responses
Soil and plant responses to climate change can be quantified in controlled settings. However, the complexity of climate projections often leads researchers to evaluate ecosystem response based on general trends, rather than specific climate model outputs. Climate projections capture spatial and temporal climate extremes and variability that are lost when using mean climate trends. In addition, application of climate projections in experimental settings remains limited. Our objective was to develop a framework to incorporate statistically downscaled climate model projections into the design of temperature and precipitation treatments for ecological experiments. To demonstrate the utility of experimental treatments derived from climate projections, we used wetlands in the Great Plains as a model ecosystem for evaluating plant and soil responses. Spatial and temporal projections were selected to capture variability and intensity of projected future conditions for exemplary purposes. To illustrate climate projection application for ecological experiments, we developed temperature and precipitation treatments based on moderate-emissions scenario climate outputs (i.e., RCP4.5–650 ppm CO 2 equivalent). Our temperature treatments captured weekly trends that represented cool, average, and warm temperature predictions, and our daily precipitation treatments mimicked various seasonal precipitation trends and extreme events projected for the late 21st century. Treatments were applied to two short-term controlled experiments evaluating (1) plant germination (temperature treatment applied in growth chamber) and (2) soil nitrogen cycling (precipitation treatment applied in greenhouse) responses to projected future conditions in the Great Plains. Our approach provides flexibility for selecting appropriate and precise climate model outputs to design experimental treatments. Using these techniques, ecologists can better incorporate variation in climate model projections for experimentally evaluating ecosystem responses to future climate conditions, reduce uncertainty in predictive ecological models, and apply predicted outcomes when making management and policy decisions.
Nebraska, Texas↗
The influence of biological soil crusts on mineral uptake by associated vascular plants
Soil surfaces dominated by cyanobacteria and cyanolichens (such as Collema sp.) are widespread in deserts of the world. The influence of these biological soil crusts on the uptake of bioessential elements is reported for the first time for six seed plants of the deserts of Utah. This sample almost doubles the number of species for which the influence of biological soil crusts on mineral uptake of associated vascular plants is known. These new case studies, and others previously published, demonstrate that cyanobacterial or cyanobacteria- Collema crusts significantly alter uptake by plants of many bioessential elements. In studies now available, these crusts always increase the N content of associated seed plants. Uptake of Cu, K, Mg, and Zn is usually (>70% of reported cases) increased in the presence of the biological soil crusts. Soil crusts are generally negatively associated with Fe and P levels in associated seed plant tissue, while plant tissue levels of Ca, Mn, and Na are positively as often as negatively associated with the presence of soil crusts. Increases in bioessential elements in vascular plant tissue from biologically-crusted areas are greatest for short-lived herbs that are rooted primarily within the surface soil, the horizon most influenced by crustal organisms. The mineral content of a deeply rooted shrub ( Coleogyne ramosissima ) was less influenced by co-occurrence of biological soil crusts.
Utah↗
Salt marsh dieback in coastal Louisiana: Survey of plant and soil conditions in Barataria and Terrebonne basins, June 2000-September 2001
Sudden and extensive dieback of the perennial marsh grass, Spartina alterniflora Loisel (smooth cordgrass), which dominates regularly flooded salt marshes along the Gulf of Mexico and Atlantic coastlines, occurred in the coastal zone of Louisiana. The objectives of this study were to assess soil and plant conditions in dieback areas of the Barataria-Terrebonne estuarine system as well as vegetative recovery during and after this dieback event. Multiple dieback sites were examined along 100 km of shoreline from the Atchafalaya River to the Mississippi River during the period from June 2000 through September 2001. The species primarily affected was S. alterniflora; sympatric species such as Avicennia germinans (L.) Stearn (black mangrove) and Juncus roemerianus Scheele (needlegrass rush) showed no visible signs of stress. The pattern of marsh dieback was distinctive with greatest mortality in the marsh interior, suggesting a correlation with local patterns of soil chemistry and/or hydrology. Little or no expansion of dieback occurred subsequent to the initial event, and areas with 50 percent or less mortality in the fall of 2000 had completely recovered by April 2001. Recovery was slower in interior marshes with 90 percent or greater mortality initially. However, regenerating plants in dieback areas showing some recovery were robust, and reproductive output was high, indicating that the causative agent was no longer present and that post-dieback soil conditions were actually promoting plant growth. Stands of other species within or near some dieback sites remained largely unchanged or expanded (A. germinans) into the dead salt marsh. The cause of the dieback is currently unknown. Biotic agents and excessive soil waterlogging/high sulfide were ruled out as primary causes of this acute event, although they could have contributed to overall plant stress and/or interacted with the primary agent to cause plant mortality. Our observations over the 15 month study specifically do not support the contention that dieback was caused by excessive grazing by Littoraria irrorata (marsh periwinkle). Instead, the data show that snails were responding to plant mortality and played an important role in rapid degradation of dead material in some areas. The dieback event was coincident with an extreme drought, low river discharge, and low sea level. These conditions could have caused plant mortality by directly decreasing water availability, increasing salinity, and/or causing oxidation and acidification of soils. The latter scenario was supported by findings of higher pyrite and acid-extractable aluminum and iron, higher acidification potential of dieback soils, and higher concentrations of aluminum and iron in dieback plant tissues (indicating uptake of potentially toxic metals) when compared to reference marshes showing no dieback. The implication of these findings is that periodic weather extremes may play a greater role in shaping coastal plant communities than has previously been recognized. Although such events may not be controlled directly, the resilience and recovery of the system may be altered by management. Such considerations will become increasingly important as global climate changes and human pressures in the coastal zone grow.
Louisiana↗
Post-fire interactions between soil water repellency, soil fertility and plant growth in soil collected from a burned piñon-juniper woodland
Woody plant encroachment can increase nutrient resources in the plant-mound zone. After a fire, this zone is often found to be water repellent. This study aimed to understand the effects of post-fire water repellency on soil water and inorganic nitrogen and their effects on plant growth of the introduced annual Bromus tectorum and native bunchgrass Pseudoroegneria spicata. Plots centered on burned Juniperus osteosperma trees were either left untreated or treated with surfactant to ameliorate water repellency. After two years, we excavated soil from the untreated and treated plots and placed it in zerotension lysimeter pots. In the greenhouse, half of the pots received an additional surfactant treatment. Pots were seeded separately with B. tectorum or P. spicata. Untreated soils had high runoff, decreased soilwater content, and elevated NO3eN in comparison to surfactant treated soils. The two plant species typically responded similar to the treatments. Above-ground biomass and microbial activity (estimated through soil CO2 gas emissions) was 16.8-fold and 9.5-fold higher in the surfactant-treated soils than repellent soils, respectably. This study demonstrates that water repellency can influence site recovery by decreasing soil water content, promoting inorganic N retention, and impairing plant growth and microbial activity.
Utah↗
Effects of vertebrate herbivores on soil processes, plant biomass, litter accumulation and soil elevation changes in a coastal marsh
1 Submergence of coastal wetlands in Louisiana is currently rapid and widespread. A number of factors contribute to this loss of habitat, including the activities of herbivores. The objective of this study was to examine the effects of large mammals, predominantly nutria and wild boar, on processes controlling soil elevation in coastal marshes. 2 Effects of herbivores on soil and vegetation were assessed by the use of paired fenced and unfenced plots over two successive growing seasons. Above‐ground biomass, litter production, changes in soil elevation, vertical soil accretion, shallow subsidence, below‐ground production of roots and rhizomes, the thickness of the root zone, soil bulk density, and soil organic matter were measured. 3 Above‐ground biomass, below‐ground production, soil elevation and the expansion of the root zone decreased due to herbivore activity. Litter production, the rate of soil surface accretion and shallow soil subsidence were all higher in grazed compared to ungrazed plots, while soil organic matter and bulk density did not differ significantly between treatments. 4 The results indicate that herbivores can have a negative effect on soil building processes, primarily by reducing below‐ground production and expansion of the root zone. Where natural rates of mineral sediment deposition are high, coastal marshes are expected to persist, despite herbivore activities. However, where sediment inputs are substantially less, herbivores may lead to destruction of habitat.
Louisiana↗
Complementary models of tree species-soil relationships in old-growth temperate forests
Ecosystem-level studies identify plant–soil feedbacks as important controls on soil nutrient availability, particularly for nitrogen and phosphorus. Although site- and species-specific studies of tree species–soil relationships are relatively common, comparatively fewer studies consider multiple co-existing species in old-growth forests across a range of sites that vary in underlying soil fertility. We characterized patterns in forest floor and mineral soil nutrients associated with four common tree species across eight undisturbed old-growth forests in Oregon, USA, and used two complementary conceptual models to assess tree species–soil relationships. Plant–soil feedbacks that could reinforce site-level differences in nutrient availability were assessed using the context-dependent relationships model, whereby relative species-based differences in each soil nutrient diverged or converged as nutrient status changed across sites. Tree species–soil relationships that did not reflect strong feedbacks were evaluated using a site-independent relationships model, whereby forest floor and surface mineral soil nutrient pools differed consistently by tree species across sites, without variation in deeper mineral soils. We found that the organically cycled elements carbon, nitrogen, and phosphorus exhibited context-dependent differences among species in both forest floor and mineral soil, and most often followed a divergence model, whereby species differences were greatest at high-nutrient sites. These patterns are consistent with theory emphasizing biotic control of these elements through plant–soil feedback mechanisms. Site-independent species differences were strongest for pools of the weatherable cations calcium, magnesium, potassium, as well as phosphorus, in mineral soils. Site-independent species differences in forest floor nutrients were attributable to one species that displayed significantly greater forest floor mass accumulation. Our findings confirm that site-independent and context-dependent tree species-soil relationships occur simultaneously in old-growth temperate forests, with context-dependent relationships strongest for organically cycled elements, and site-independent relationships strongest for weatherable elements with inorganic cycling phases. These models provide complementary explanations for patterns of nutrient accumulation and cycling in mixed-species old-growth temperate forests.
Oregon↗
Effect of permafrost thaw on plant and soil fungal community in the boreal forest: Does fungal community change mediate plant productivity response?
Permafrost thaw is leading to rapid shifts in boreal ecosystem function. Permafrost thaw affects soil carbon turnover through changes in soil hydrology, however, the biotic mechanisms regulating plant community response remain elusive. Here, we measured the response of fungal community composition and soil nutrient content in an intact permafrost plateau forest soil and an adjacent thermokarst bog using barcoded amplicon targeting ITS2 and 28S rRNA genes. Next, we used the soils from the permafrost plateau and the thermokarst bog as soil inoculum in a greenhouse experiment to measure whether shifts in fungal community and soil water level regulate plant productivity. Overall, we found that fungal community composition differed significantly between the thawed and intact permafrost sites, but soil nutrient content did not. Relative abundance of mycorrhizal fungal taxa decreased while relative abundance of putative fungal pathogens increased with permafrost thaw. In the greenhouse, we found that ecto- and arbuscular associated host plants had higher productivity in permafrost-intact soils relative to thawed soils. However, productivity of non-mycorrhizal tussock grass was more affected by soil water levels than soil communities. Our results suggest that fungal communities are crucial in mediating plant response to permafrost thaws inducing hydrology changes.
Alaska↗
Use of stable isotopes of carbon and nitrogen to identify sources of organic matter to bed sediments of the Tualatin River, Oregon
The potential sources of organic matter to bed sediment of the Tualatin River in northwestern Oregon were investigated by comparing the isotopic fractionation of carbon and nitrogen and the carbon/nitrogen ratios of potential sources and bed sediments. Samples of bed sediment, suspended sediment, and seston, as well as potential source materials, such as soil, plant litter, duckweed, and wastewater treatment facility effluent particulate were collected in 1998-2000. Based on the isotopic data, terrestrial plants and soils were determined to be the most likely sources of organic material to Tualatin River bed sediments. The delta 13C fractionation matched well, and although the delta 15N and carbon/nitrogen ratio of fresh plant litter did not match those of bed sediments, the changes expected with decomposition would result in a good match. The fact that the isotopic composition of decomposed terrestrial plant material closely resembled that of soils and bed sediments supports this conclusion. Phytoplankton probably was not a major source of organic matter to bed sediments. Compared to the values for bed sediments, the delta 13C values and carbon/nitrogen ratios of phytoplankton were too low and the delta 15N values were too high. Decomposition would only exacerbate these differences. Although phytoplankton cannot be considered a major source of organic material to bed sediment, a few bed sediment samples in the lower reach of the river showed a small influence from phytoplankton as evidenced by lower delta 13C values than in other bed sediment samples. Isotopic data and carbon/nitrogen ratios for bed sediments generally were similar throughout the basin, supporting the idea of a widespread source such as terrestrial material. The delta 15N was slightly lower in tributaries and in the upper reaches of the river. Higher rates of sediment oxygen demand have been measured in the tributaries in previous studies and coupled with the isotopic data may indicate the presence of more labile organic matter in these areas. Results from this study indicate that strategies to improve oxygen conditions in the Tualatin River are likely to be more successful if they target sources of soil, leaf litter, and other terrestrially derived organic materials to the river rather than the instream growth of algae.
Scientific Investigations Report↗
Global patterns of the isotopic composition of soil and plant nitrogen
We compiled new and published data on the natural abundance N isotope composition (δ 15 N values) of soil and plant organic matter from around the world. Across a broad range of climate and ecosystem types, we found that soil and plant δ 15 N values systematically decreased with increasing mean annual precipitation (MAP) and decreasing mean annual temperature (MAT). Because most undisturbed soils are near N steady state, the observations suggest that an increasing fraction of ecosystem N losses are 15 N-depleted forms (NO 3 , N 2 O, etc.) with decreasing MAP and increasing MAT. Wetter and colder ecosystems appear to be more efficient in conserving and recycling mineral N. Globally, plant δ 15 N values are more negative than soils, but the difference (δ 15 N plant -δ 15 N soil ) increases with decreasing MAT (and secondarily increasing MAP), suggesting a systematic change in the source of plant-available N (organic/NH 4 + versus NO 3 − ) with climate. Nitrogen isotopes reflect time integrated measures of the controls on N storage that are critical for predictions of how these ecosystems will respond to human-mediated disturbances of the global N cycle.
Global Biogeochemical Cycles↗
Short-term ecological effects of solar energy development depend on plant community, soil type, and disturbance intensity
Solar energy is rapidly growing to decarbonize the electrical grid. Maintaining ecosystem function with solar energy generation can be promoted through construction methods that minimize negative impacts on soils and vegetation. However, the disturbance created by less-impactful construction methods at utility-scale solar energy (USSE) facilities and the ecosystem responses remain relatively unknown. We monitored soils and vegetation before and after the USSE build-out to assess the short-term impacts of construction on soils and vegetation at the Gemini Solar Project in the Mojave Desert. The facility was constructed with methods intended to be less impactful than traditional techniques. Our goal was to answer three questions: (1) What are the short-term effects of construction on soils and vegetation? (2) Do construction effects vary by the initial plant community and soil type? and (3) Does disturbance intensity from construction affect soil and vegetation response? We found strong evidence that the construction of the Gemini facility increased bare soil and soil compaction, and decreased dark biocrust cover and soil stability in the short term. For every 1% increase in disturbance intensity, we found a 0.23% increase in bare soil cover and a 0.10% decrease in dark biocrust cover. Plant responses varied more than soil responses and depended on the initial plant community and soil type, with decreases in plant canopy cover highest in sandy soils dominated by creosote bush ( Larrea tridentata ) and white bursage ( Ambrosia dumosa ) shrubs. Synthesis and applications : Many impacts of USSE facility construction depend on the underlying vegetation and soils and the level of disturbance intensity. The use of less-impactful construction methods, including a combination of overland travel and drive-and-crush examined in our study, can ameliorate negative effects relative to traditional construction practices and provide a pathway to maintain ecosystem function.
Journal of Applied Ecology↗
Hydrologic characterization of desert soils with varying degrees of pedogenesis: 1. field experiments evaluating plant-relevant soil water behavior
To assess the eff ect of pedogenesis on the soil moisture dynamics infl uencing the character and quality of ecological habitat, we conducted infi ltration and redistribution experiments on three alluvial deposits in the Mojave National Preserve: (i) recently deposited active wash sediments, (ii) a soil of early Holocene age, and (iii) a highly developed soil of late Pleistocene age. At each, we ponded water in a 1-m-diameter infi ltration ring for 2.3 h and monitored soil water content and matric pressure during and atier infi ltration, using probes and electrical resistivity imaging (ERI). Infi ltration and downward fl ow rates were greater in younger material, favoring deep-rooted species. Deep-rooted species tend to colonize the margins of washes, where they are unaff ected by sediment transport that inhibits colonization. The ERI results support important generalizations, for example that shallower than 0.5 m, infi ltrated water persists longer in highly developed soil, favoring shallow-rooted species. Soil moisture data for the two youngest soils suggested that saturation overshoot, which may have signifi cant but unexplored hydroecologic and pedogenic eff ects, occurred at the horizontally advancing weting front. Spatial heterogeneity of soil properties generally increased with pedogenic development. Evidence suggested that some early-stage developmental processes may promote uniformity; the intermediate- age soil appeared to have the least heterogeneity in terms of textural variation with depth, and also the least anisotropy. Lateral heterogeneity was pronounced in older soil, having a multitude of eff ects on the distribution and retention of soil water, and may facilitate certain water-conserving strategies of plants over what would be possible in a laterally homogeneous soil. ?? Soil Science Society of America.
California↗
Infrared heater system for warming tropical forest understory plants and soils
The response of tropical forests to global warming is one of the largest uncertainties in predicting the future carbon balance of Earth. To determine the likely effects of elevated temperatures on tropical forest understory plants and soils, as well as other ecosystems, an infrared (IR) heater system was developed to provide in situ warming for the Tropical Responses to Altered Climate Experiment (TRACE) in the Luquillo Experimental Forest in Puerto Rico. Three replicate heated 4-m- diameter plots were warmed to maintain a 4°C increase in understory vegetation compared to three unheated control plots, as sensed by IR thermometers. The equipment was larger than any used previously and was subjected to challenges different from those of many temperate ecosystem warming systems, including frequent power surges and outages, high humidity, heavy rains, hurricanes, saturated clayey soils, and steep slopes. The system was able to maintain the target 4.0°C increase in hourly average vegetation temperatures to within ± 0.1°C. The vegetation was heterogeneous and on a 21° slope, which decreased uniformity of the warming treatment on the plots; yet, the green leaves were fairly uniformly warmed, and there was little difference among 0–10 cm depth soil temperatures at the plot centers, edges, and midway between. Soil temperatures at the 40–50 cm depth increased about 3°C compared to the controls after a month of warming. As expected, the soil in the heated plots dried faster than that of the control plots, but the average soil moisture remained adequate for the plants. The TRACE heating system produced an adequately uniform warming precisely controlled down to at least 50-cm soil depth, thereby creating a treatment that allows for assessing mechanistic responses of tropical plants and soil to warming, with applicability to other ecosystems. No physical obstacles to scaling the approach to taller vegetation (i.e., trees) and larger plots were observed.
Puerto Rico↗
Bacteria common to rhizosphere communities of Asiatic bittersweet across a post-glacial landscape
Invasive plants such as Asiatic bittersweet ( Celastrus orbiculatus Thunb.) are a significant problem for land managers as they impact plant species composition, disrupt nutrient dynamics and structure of native ecosystems, and are difficult to eradicate. As a result of the increasing abundance of Asiatic bittersweet across the eastern U.S., we have been investigating underlying factors potentially contributing to the success of this plant. Recently, ecologists have been investigating the role of plant-soil-microbe interactions contributing to plant invasion. This work has led to question: are there certain microbes (e.g., bacteria, fungi) contributing to the success of some invasive plants? We hypothesize that despite differences in geologic age of soils where Asiatic bittersweet has established in the Indiana Dunes National Park there are sufficient common factors that led to common bacterial taxa in their rhizosphere. The objectives were to determine differences and commonalities in the soil chemistry, plant community and bacterial communities of Asiatic bittersweet plants. To achieve these objectives, bittersweet plants were collected at thirteen locations in the national park from soils ranging in geologic age from 150 to over 14,500 years. Surrounding soil chemistry, plant cover and the 16S rRNA gene amplicon sequences of rhizosphere soil bacterial communities of these Asiatic bittersweet were compared. Asiatic bittersweet coverage of sampling sites ranged from 2 to 77% averaging 52 ± 2%. There were statistically significant differences ( p < 0.05) in alpha diversity (Shannon, Faith’s PD and Pielou’s evenness) and beta diversity (Bray Curtis, Jaccard, unweighted Unifrac, weighted Unifrac) among the samples when grouped by soil age or habitat. Despite these differences in the bacterial communities from different soil ages and habitats, some bacterial taxa (e.g., Bacillus, Streptomyces, Sphingomonas and Rhizobiales) previously found in other studies to be beneficial to plant growth were found in every rhizosphere community sampled. These microbes provide insight into a possible contributing factor to the success of this invasive plant at the Indiana Dunes National Park, and a strategy for future work to reduce the impact of Asiatic bittersweet establishment and offer some new strategies to manage this nuisance species.
Frontiers of Ecology and Evolution↗