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At least 37 records · Page 2Linked to original sources
USGS2016

Methane emissions from oceans, coasts, and freshwater habitats: New perspectives and feedbacks on climate

Methane is a powerful greenhouse gas, and atmospheric concentrations have risen 2.5 times since the beginning of the Industrial age. While much of this increase is attributed to anthropogenic sources, natural sources, which contribute between 35% and 50% of global methane emissions, are thought to have a role in the atmospheric methane increase, in part due to human influences. Methane emissions from many natural sources are sensitive to climate, and positive feedbacks from climate change and cultural eutrophication may promote increased emissions to the atmosphere. These natural sources include aquatic environments such as wetlands, freshwater lakes, streams and rivers, and estuarine, coastal, and marine systems. Furthermore, there are significant marine sediment stores of methane in the form of clathrates that are vulnerable to mobilization and release to the atmosphere from climate feedbacks, and subsurface thermogenic gas which in exceptional cases may be released following accidents and disasters (North Sea blowout and Deepwater Horizon Spill respectively). Understanding of natural sources, key processes, and controls on emission is continually evolving as new measurement and modeling capabilities develop, and different sources and processes are revealed. This special issue of Limnology and Oceanography gathers together diverse studies on methane production, consumption, and emissions from freshwater, estuarine, and marine systems, and provides a broad view of the current science on methane dynamics of aquatic ecosystems. Here, we provide a general overview of aquatic methane sources, their contribution to the global methane budget, and key uncertainties. We then briefly summarize the contributions to and highlights of this special issue.

Limnology and Oceanography↗
USGS2012

Perils of correlating CUSUM-transformed variables to infer ecological relationships (Breton et al. 2006; Glibert 2010)

We comment on a nonstandard statistical treatment of time-series data first published by Breton et al. (2006) in Limnology and Oceanography and, more recently, used by Glibert (2010) in Reviews in Fisheries Science. In both papers, the authors make strong inferences about the underlying causes of population variability based on correlations between cumulative sum (CUSUM) transformations of organism abundances and environmental variables. Breton et al. (2006) reported correlations between CUSUM-transformed values of diatom biomass in Belgian coastal waters and the North Atlantic Oscillation, and between meteorological and hydrological variables. Each correlation of CUSUM-transformed variables was judged to be statistically significant. On the basis of these correlations, Breton et al. (2006) developed "the first evidence of synergy between climate and human-induced river-based nitrate inputs with respect to their effects on the magnitude of spring Phaeocystis colony blooms and their dominance over diatoms."

Limnology and Oceanography↗
USGS2022

Corrigendum: Associations between cyanobacteria and indices of secondary production in the western basin of Lake Erie

In the last year, we became aware that data used in our above-referenced manuscript from 2018 published in Limnology and Oceanography contained significant errors. In the 2018 manuscript, we found that indices of secondary production were negatively correlated to indices of cyanobacterial abundance and toxicity. Unfortunately, one of our indices of cyanobacterial abundance (biovolume) and our measurement of toxicity (microcystin concentration) were inaccurate in the data we used in the 2018 manuscript. Upon discovering these errors, we immediately began correcting the repositories where these data were available. Having corrected those data repositories, we are now reporting on the re-analysis of the data using the methods previously described in the 2018 manuscript. Although the relationships are slightly different, our interpretation is that the conclusions of the 2018 manuscript are still valid using the corrected data. The data errors we experienced were traced to a spreadsheet that was used to share data among the research team, which had errors caused by mistakes in copy-pasting formulas instead of data and ‘inadvertent’ edits that were saved by the spreadsheet's auto-save function. We apologize to the scientific community for these errors.

Lake Erie↗
USGS2019

Enhancement of primary production during drought in a temperate watershed is greater in larger rivers than headwater streams

Drought is common in rivers, yet how this disturbance regulates metabolic activity across network scales is largely unknown. Drought often lowers gross primary production (GPP) and ecosystem respiration (ER) in small headwaters but by contrast can enhance GPP and cause algal blooms in downstream estuaries. We estimated ecosystem metabolism across a nested network of 13 reaches from headwaters to the main stem of the Connecticut River from 2015 through 2017, which encompassed a pronounced drought. During drought, GPP and ER increased, but with greater enhancement in larger rivers. Responses of GPP and ER were partially due to warmer temperatures associated with drought, particularly in the larger rivers where temperatures during summer drought were > 10°C higher than typical summer baseflow. The larger rivers also had low canopy cover, which allowed primary producers to take advantage of lower turbidity and fewer cloudy days during drought. We conclude that GPP is enhanced by higher temperature, lower turbidity, and longer water residence times that are all a function of low discharge, but ecosystem response in temperate watersheds to these drivers depends on light availability regulated by riparian canopy cover. In larger rivers, GPP increased more than ER during drought, even leading to temporary autotrophy, an otherwise rare event in the typically light‐limited heterotrophic Connecticut River main stem. With climate change, rivers and streams may become warmer and drought frequency and severity may increase. Such changes may increase autotrophy in rivers with broad implications for carbon cycling and water quality in aquatic ecosystems.

Connecticut, Massachusetts, New Hampshire, Vermont↗
USGS2022

Oxygenation of a karst subterranean estuary during a tropical cyclone: Mechanisms and implications for the carbon cycle

Seasonal precipitation affects carbon turnover and methane accumulation in karst subterranean estuaries, the region of coastal carbonate aquifers where hydrologic and biogeochemical processes regulate material exchange between the land and ocean. However, the impact that tropical cyclones exert on subsurface carbon cycling within karst landscapes is poorly understood. Here, we present 5-month-long hydrologic and chemical records from 1 and 2 km inland from the coastline within the Ox Bel Ha Cave System in the northeastern Yucatan Peninsula. The record encompasses wet and dry seasons and includes the impact of rainfall during the development of Tropical Storm Hanna in October 2014 . Methane accumulated in highest concentrations at the inland site, especially during the wet season preceding the storm. Intense rainfall led to episodic increases in water level and salinity shifts at both sites, indicating a spatially widespread hydrologic response. The most profound storm effect was a ~ 0.8 mg L −1 pulse of dissolved oxygen that declined to zero within 2 weeks and corresponded with a reduction of methane. A positive shift in methane's stable carbon isotope content from −62.6‰ ± 0.6‰ before the storm to −44.0‰ ± 2.4‰ after the storm indicates microbial methane oxidation was a mechanism for the loss of groundwater methane. Post-storm methane concentrations did not recover to pre-storm levels during the observation period, suggesting tropical cyclones have long-lasting (months) effects on the carbon cycle. Compared to seasonal effects, mixing and oxygen inputs during storm-induced hydrologic forcing have an outsized biogeochemical influence within stratified coastal aquifers.

Ox Bel Ha Cave System, Yucatan Peninsula↗
USGS2023

High-frequency variability of carbon dioxide fluxes in tidal water over a temperate salt marsh

Existing analyses of salt marsh carbon budgets rarely quantify carbon loss as CO 2 through the air–water interface in inundated marshes. This study estimates the variability of partial pressure of CO 2 ( p CO 2 ) and air–water CO 2 fluxes over summer and fall of 2014 and 2015 using high-frequency measurements of tidal water p CO 2 in a salt marsh of the U.S. northeast region. Monthly mean CO 2 effluxes varied in the range of 5.4–25.6 mmol m −2 marsh d −1 (monthly median: 4.8–24.7 mmol m −2 marsh d −1 ) during July to November from the tidal creek and tidally-inundated vegetated platform. The source of CO 2 effluxes was partitioned between the marsh and estuary using a mixing model. The monthly mean marsh-contributed CO 2 effluxes accounted for a dominant portion (69%) of total CO 2 effluxes in the inundated marsh, which was 3–23% (mean 13%) of the corresponding lateral flux rate of dissolved inorganic carbon (DIC) from marsh to estuary. Photosynthesis in tidal water substantially reduced the CO 2 evasion, accounting for 1–86% (mean 31%) of potential CO 2 evasion and 2–26% (mean 11%) of corresponding lateral transport DIC fluxes, indicating the important role of photosynthesis in controlling the air–water CO 2 evasion in the inundated salt marsh. This study demonstrates that CO 2 evasion from inundated salt marshes is a significant loss term for carbon that is fixed within marshes.

Massachusetts↗
USGS2023

Response of lake metabolism to catchment inputs inferred using high-frequency lake and stream data from across the northern hemisphere

In lakes, the rates of gross primary production (GPP), ecosystem respiration (R), and net ecosystem production (NEP) are often controlled by resource availability. Herein, we explore how catchment vs. within lake predictors of metabolism compare using data from 16 lakes spanning 39°N to 64°N, a range of inflowing streams, and trophic status. For each lake, we combined stream loads of dissolved organic carbon (DOC), total nitrogen (TN), and total phosphorus (TP) with lake DOC, TN, and TP concentrations and high frequency in situ monitoring of dissolved oxygen. We found that stream load stoichiometry indicated lake stoichiometry for C : N and C : P ( r 2 = 0.74 and r 2 = 0.84, respectively), but not for N : P ( r 2 = 0.04). As we found a strong positive correlation between TN and TP, we only used TP in our statistical models. For the catchment model, GPP and R were best predicted by DOC load, TP load, and load N : P ( R 2 = 0.85 and R 2 = 0.82, respectively). For the lake model, GPP and R were best predicted by TP concentrations ( R 2 = 0.86 and R 2 = 0.67, respectively). The inclusion of N : P in the catchment model, but not the lake model, suggests that both N and P regulate metabolism and that organisms may be responding more strongly to catchment inputs than lake resources. Our models predicted NEP poorly, though it is unclear why. Overall, our work stresses the importance of characterizing lake catchment loads to predict metabolic rates, a result that may be particularly important in catchments experiencing changing hydrologic regimes related to global environmental change.

Limnology & Oceanography↗
USGS2021

Assessment of multiple ecosystem metabolism methods in an estuary

Ecosystem metabolism is a key ecological attribute and easy to describe, but quantifying metabolism in estuaries is challenging. Properly scaling measurements through time and space requires consideration of hydrodynamics and mixing water from heterogeneous sources, making any estimation uncertain. Here, we compared three methods for modeling ecosystem metabolism in a portion of the Sacramento-San Joaquin Delta. Metabolism estimates based on laboratory incubations, continuous in situ buoys, and an oxygen isotope approach all indicated the system was net heterotrophic, and calculated rates were comparable in magnitude when averaged over the 2-month study. Daily metabolic rates based on in situ buoys were the most variable, likely due to horizontal and vertical advection and poor portrayal of the dissolved oxygen budget. After temporally averaging in situ buoy estimates or smoothing the dissolved oxygen time series for tidal effects, rates were more comparable to the other methods, which may be necessary to account for tidal advection and unbalanced contributions from subhabitats within the metabolic footprint. Incubation-based rates represent the finest temporal and spatial scale and only account for pelagic processes, which may explain why incubation-based rates were lower than the other two methods. The oxygen isotope method provided temporally and spatially integrated rates that were bracketed by the other two methods and may be a valuable tool in systems matching the model requirements. Because uncertainty arises in each method from a number of assumptions and scaling calculations, the resolution of metabolic rates in estuaries is likely coarser and more variable than in other aquatic ecosystems.

California↗
USGS2025

Identifying conditions associated with outliers produced by three different chlorophyll fluorometers: A comparison of instrumentation and development of correction formulae

Measurements of chlorophyll concentration reported by fluorometers (fChl) are used in environmental research and monitoring, as inputs to models, and in the interpretation of remote sensing data. Researchers and managers benefit from understanding how to interpret and ensure the accuracy of fChl data collected by in situ fluorometers. Although fChl values produced by different manufacturers are often in agreement with discrete laboratory-derived Chlorophyll a (Chl a ) concentration measurements, there are instances in which results significantly differ. Further, when measuring fChl side by side, different fluorometers may report values that differ significantly from each other, despite passing calibration checks prior to deployment. We compared environmental conditions and phytoplankton species composition associated with instances in which fChl measurements from three different fluorometers (EXO2 Total Algae Smart Sensor, YSI Inc./Xylem Inc., Yellow Springs, Ohio; FluoroProbe III, bbe Moldaenke GmbH, Kiel, Germany; WETStar, Sea-Bird Scientific, Bellevue, Washington) were significantly different from laboratory-derived Chl a concentrations. Results indicated that elevated primary productivity, as indicated by high pH, dissolved oxygen, and the ratio of Chl a to phaeophytin, were correlated with underestimated fChl values recorded by each sensor. After removing outliers, we determined unique correction guidance for each of the three sensors and demonstrated that after applying correction formulae, fChl measurements produced by each sensor became directly comparable.

California↗
USGS2006

Trends in the nutrient enrichment of U.S. rivers during the late 20th century and their relation to changes in probable stream trophic conditions

We estimated trends in concentrations of total phosphorus (TP) and total nitrogen (TN) and the related change in the probabilities of trophic conditions from 1975 to 1994 at 250 nationally representative riverine monitoring locations in the U.S. with drainage areas larger than about 1,000 km2. Statistically significant (p < 0.05) declines were detected in TP and TN concentrations at 44% and 37% of the monitoring sites, and significant increases were detected at 3% and 9% of the sites, respectively. We used a statistical model to assess changes in the probable trophic-state classification of the sites after adjusting for climate-related variability in nutrient concentrations. The probabilistic assessment accounts for current knowledge of the trophic response of streams to nutrient enrichment, based on a recently proposed definition of "eutrophic," "mesotrophic," and "oligotrophic" conditions in relation to total nutrient concentrations. Based on these trophic definitions, we found that the trophic state improved at 25% of the monitoring sites and worsened at fewer than 5% of the sites; about 70% of the sites were unchanged. Improvements in trophic-state related to declines in TP were more common in predominantly forested and shrub-grassland watersheds, whereas the trophic state of predominantly agricultural sites was unchanged. Despite the declines in TP concentrations at many sites, about 50% of all monitoring sites, and more than 60% of the sites in predominantly agricultural and urban watersheds, were classified as eutrophic in 1994 based on TP concentrations. Contemporaneous reductions in major nutrient sources to streams, related to wastewater treatment upgrades, phosphate detergent bans, and declines in some agricultural sources, may have contributed to the declines in riverine nutrient concentrations and associated improvements in trophic conditions. ?? 2006, by the American Society of Limnology and Oceanography, Inc.

Conference Paper↗
USGS2015

Turbidity, light, temperature, and hydropeaking control primary productivity in the Colorado River, Grand Canyon

Dams and river regulation greatly alter the downstream environment for gross primary production (GPP) because of changes in water clarity, flow, and temperature regimes. We estimated reach-scale GPP in five locations of the regulated Colorado River in Grand Canyon using an open channel model of dissolved oxygen. Benthic GPP dominates in Grand Canyon due to fast transport times and low pelagic algal biomass. In one location, we used a 738 days time series of GPP to identify the relative contribution of different physical controls of GPP. We developed both linear and semimechanistic time series models that account for unmeasured temporal covariance due to factors such as algal biomass dynamics. GPP varied from 0 g O 2 m −2 d −1 to 3.0 g O 2 m −2 d −1 with a relatively low annual average of 0.8 g O 2 m −2 d −1 . Semimechanistic models fit the data better than linear models and demonstrated that variation in turbidity primarily controlled GPP. Lower solar insolation during winter and from cloud cover lowered GPP much further. Hydropeaking lowered GPP but only during turbid conditions. Using the best model and parameter values, the model accurately predicted seasonal estimates of GPP at 3 of 4 upriver sites and outperformed the linear model at all sites; discrepancies were likely from higher algal biomass at upstream sites. This modeling approach can predict how changes in physical controls will affect relative rates of GPP throughout the 385 km segment of the Colorado River in Grand Canyon and can be easily applied to other streams and rivers.

Arizona↗
USGS2015

Model-based interpretation of sediment concentration and vertical flux measurements in a shallow estuarine environment

A one-dimensional numerical model describing tidally varying vertical mixing and settling was used to interpret sediment concentrations and vertical fluxes observed in the shoals of South San Francisco Bay by two acoustic Doppler velocimeters (ADVs) at elevations of 0.36 m and 0.72 m above bed. Measured sediment concentrations changed by up to 100 g m &minus;3 over the semidiurnal tidal cycle. These dynamics were dominated by local resuspension and settling. Multiple particle class models suggested the existence of a class with fast settling velocities ( w s of 9.0 &times; 10 &minus;4 m s &minus;1 in spring and 5.8 &times; 10 &minus;4 m s &minus;1 in fall) and a slowly settling particle fraction ( w s of <1 &times; 10 &minus;7 m s &minus;1 in spring and 1.4 &times; 10 &minus;5 m s &minus;1 in fall). Modeled concentrations of slowly settling particles at 0.36 m were as high as 20 g m &minus;3 during fall and varied with the spring-neap cycle while fine sediment concentrations in spring were constant around 5 g m &minus;3 . Analysis of in situ water column floc size distributions suggested that floc properties in the lower part of the water column were most likely governed by particle-size distribution on the bed and not by coagulation, validating our multiple particle size approach. A comparison of different sediment bed models with respect to model performance, sensitivity, and identifiability suggested that the use of a sediment erosion model linear in bottom shear stress &tau; b ( E = M ( &tau; b &minus; &tau; c )) was the most appropriate choice to describe the field observations when the critical shear stress &tau; c and the proportionality factor M were kept constant.

California↗
USGS2015

Evidence for the assimilation of ancient glacier organic carbon in a proglacial stream food web

We used natural abundance &delta; 13 C, &delta; 15 N, and &Delta; 14 C to compare trophic linkages between potential carbon sources (leaf litter, epilithic biofilm, and particulate organic matter) and consumers (aquatic macroinvertebrates and fish) in a nonglacial stream and two reaches of the heavily glaciated Herbert River. We tested the hypothesis that proglacial stream food webs are sustained by organic carbon released from glacial ecosystems. Carbon sources and consumers in the nonglacial stream had carbon isotope values that ranged from -30&permil; to -25&permil; for &delta; 13 C and from -14&permil; to 53&permil; for &Delta; 14 C reflecting a food web sustained mainly on contemporary primary production. In contrast, biofilm in the two glacial stream sites was highly &Delta; 14 C-depleted (-215&permil; to 175&permil;) relative to the nonglacial stream consistent with the assimilation of ancient glacier organic carbon. IsoSource modeling showed that in upper Herbert River, macroinvertebrates (&Delta; 14 C = -171&permil; to 22&permil;) and juvenile salmonids (&Delta; 14 C = &minus;102&permil; to 17&permil;) reflected a feeding history of both biofilm (~ 56%) and leaf litter (~ 40%). We estimate that in upper Herbert River on average 36% of the carbon incorporated into consumer biomass is derived from the glacier ecosystem. Thus, 14 C-depleted glacial organic carbon was likely transferred to higher trophic levels through a feeding history of bacterial uptake of dissolved organic carbon and subsequent consumption of 14 C-depleted biofilm by invertebrates and ultimately fish. Our findings show that the metazoan food web is sustained in part by glacial organic carbon such that future changes in glacial runoff could influence the stability and trophic structure of proglacial aquatic ecosystems.

Limnology and Oceanography↗
USGS2015

Rapid water quality change in the Elwha River estuary complex during dam removal

Dam removal in the United States is increasing as a result of structural concerns, sedimentation of reservoirs, and declining riverine ecosystem conditions. The removal of the 32 m Elwha and 64 m Glines Canyon dams from the Elwha River in Washington, U.S.A., was the largest dam removal project in North American history. During the 3 yr of dam removal&mdash;from September 2011 to August 2014&mdash;more than ten million cubic meters of sediment was eroded from the former reservoirs, transported downstream, and deposited throughout the lower river, river delta, and nearshore waters of the Strait of Juan de Fuca. Water quality data collected in the estuary complex at the mouth of the Elwha River document how conditions in the estuary changed as a result of sediment deposition over the 3 yr the dams were removed. Rapid and large-scale changes in estuary conditions&mdash;including salinity, depth, and turbidity&mdash;occurred 1 yr into the dam removal process. Tidal propagation into the estuary ceased following a large sediment deposition event that began in October 2013, resulting in decreased salinity, and increased depth and turbidity in the estuary complex. These changes have persisted in the system through dam removal, significantly altering the structure and functioning of the Elwha River estuary ecosystem.

Washington↗