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USGS2001

Coefficients of conservatism for the vascular flora of the Dakotas and adjacent grasslands

Floristic quality assessment can be used to identity natural areas, to facilitate comparisons among different sites, to provide long-term monitoring of natural area quality, and to evaluate habitat management and restoration efforts. To facilitate the use of floristic quality assessment in North Dakota, South Dakota (excluding the Black Hills), and adjacent grasslands, we developed a species list and assigned coefficients of conservatism (C values; range 0 to 10) to each plant species in the region's flora. The C values we assigned represented our collective knowledge of the patterns of occurrence of each plant species in the Dakotas and our confidence that a particular taxon is natural-area dependent. Because state boundaries usually do not follow ecological boundaries, the C values we assigned should be equally valid in nearby areas with the same vegetation types. Of the 1,584 taxa we recognized in this effort, 275 (17%) were determined to be nonnative to the region. We assigned C values of 4 or higher to 77% of our taxa, and the entire native flora had a mean C value (C) of 6.l. A floristic quality index (FQI) can be calculated to rank sites in order of their floristic quality. By applying the coefficients of conservatism supplied here and calculating C and FQI, an effective means of evaluating the quality of plant communities can be obtained. Additionally, by repeating plant surveys and calculations of C and FQI over time, temporal changes in floristic quality can be identified.

North Dakota, South Dakota↗

USGS1998

Uredo maua , sp. nov., and Uromyces tairae : Additions to the rust flora of Hawai’i

Uredo maua , on Xylosma hawaiiense (Flacourtiaceae), an endemic tree of Hawaiian forests, is newly described as an addition to Hawai’i's native rust flora. Uredo wakensis , originally described from Wake Island and reported from other Pacific islands on Tournefortia argentea (Boraginaceae), represents the uredinial state of Uromyces tairae , described from Okinawa. This rust is newly reported from Hawai’i.

Hawai'i↗

USGS1971

A Pliocene flora and insect fauna from the Bering Strait region

A flood-plain forest has been preserved beneath a lava flow that invaded the Inmachuk River Valley in the northern part of the Seward Peninsula, Alaska, during the Pliocene Epoch. The fossil flora is of great biogeographic interest because of its position (Fig. 1) in a tundra region about 250 km east of Bering Strait, 75 km south of the Arctic Circle, and 65 km west of the northwestern limit of spruce-birch forest. It provides insight into the history of the development of the circumpolar boreal forest (taiga). A rich arthropod fauna casts light on the phylogeny of several modern insect genera and on the origin of modern tundra faunas. A potassium-argon analysis of the overlying basaltic lava provides our first radiometric age estimate (5.7±0.2 million years) for the Clamgulchian Stage, a Late Tertiary time-stratigraphic unit based on fossil plants and widely recognized in Alaska ( Wolfe and Hopkins 1967) and northeastern Siberia.

Palaeogeography, Palaeoclimatology, Palaeoecology↗

USGS1990

Effects of benthic flora on arsenic transport

Chemical and biological interactions involving arsenic (As) and phosphorus (P) appear to affect significantly As transport and distribution in Whitewood Creek, South Dakota. Data (first‐order uptake rate constants, standing crop, and accumulation factors) that can be used to predict As transport have been determined using algae collected in the creek along a transect from upstream of mine discharge down gradient through a 57‐km impacted reach. Cultures of Achnanthes minutissima (Bacillariophyceae) were isolated from four sites along a longitudinal gradient of dissolved As within the study reach and were maintained at ambient dissolved‐As concentrations. Arsenic sorption‐rate constants for cell surfaces of these isolates were estimated as a function of dissolved arsenate and orthophosphate. All isolates sorbed orthophosphate preferentially over arsenate. Initial sorption of both arsenate and orthophosphate appeared to follow a first‐order equation within media formulations but did not adequately describe other observed effects among formulations or between isolates. Although estimated sorption‐rate constants increased slightly with increased dissolved arsenate concentration, algae isolated from a site with elevated dissolved As had a significantly slower rate of As uptake compared with the same species isolated from an uncontaminated site upstream. Field and laboratory results indicate that the benthic flora represent a significant As pool, which may episodically affect water‐column concentrations.

Journal of Environmental Engineering↗

USGS1993

Late Quaternary paleoceanography of the Pervenets Canyon area of the Bering Sea: Evidence from the diatom flora

Sediments from three gravity cores from an east-west shelf-to-slope transect along the axis of Pervenets Canyon in the northern Navarin basin, Bering Sea were analyzed for diatoms. The diatom floras present in the cores were divided into four assemblages following Sancetta (1981). The Bering Basin (deep water open ocean) and Sea Ice (ice cover at least six months per year) Assemblages were dominant in each core. The taxa that comprise the Bering Shelf Assemblage (continental shelf) indicate that downslope transport plays only a minor part in the development of the thanatocenoses. The presence (up to 10% of the total valve count) of the Productivity Assemblage, which consists mainly of poorly silicified, easily dissolved taxa, indicates that nutrient flux is relatively high in the region. Several taxa can be used as proxy indicators for specific water masses. Neodenticula seminae (Simonsen & Kanaya) Akiba & Yanagisawa is indicative of Holocene open marine (deep water) conditions. Nitzschia cylindra (Grunow) Hasle and N. grunowii Hasle are both associated with sea ice and are thought to indicate late Pleistocene conditions. The relative downcore abundance of these taxa was used to approximate the Pleistocene- Holocene boundary (recognized in Core 80–65 at a depth of about 75 cm).

Diatom Research↗

USGS2025

A quantitative classification of the geography of non-native flora in the United States

Aim Non-native plants have the potential to harm ecosystems. Harm is classically related to their distribution and abundance, but this geographical information is often unknown. Here, we assess geographical commonness as a potential indicator of invasive status for non-native flora in the United States. Geographical commonness could inform invasion risk assessments across species and ecoregions. Location Conterminous United States. Time Period Through 2022. Major Taxa Studied Plants. Methods We compiled and standardised occurrence and abundance data from 14 spatial datasets and used this information to categorise non-native species as uncommon or common based on three dimensions of commonness: area of occupancy, habitat breadth and local abundance. To assess consistency in existing categorizations, we compared commonness to invasive status in the United States. We identified species with higher-than-expected abundance relative to their occupancy, habitat breadth or residence time. We calculated non-native plant richness within United States ecoregions and estimated unreported species based on rarefaction/extrapolation curves. Results This comprehensive database identified 1874 non-native plant species recorded in 4,844,963 locations. Of these, 1221 species were locally abundant (> 10% cover) in 797,759 unique locations. One thousand one hundred one non-native species (59%) achieved at least one dimension of commonness, including 565 species that achieved all three. Species with longer residence times tended to meet more dimensions of commonness. We identified 132 species with higher-than-expected abundance. Ecoregions in the central United States have the largest estimated numbers of unreported, abundant non-native plants. Main Conclusions A high proportion of non-native species have become common in the United States. However, existing categorizations of invasive species are not always consistent with species' abundance and distribution, even after considering residence time. Considering geographical commonness and higher-than-expected abundance revealed in this new dataset could support more consistent and proactive identification of invasive plants and lead to more efficient management practices.

Conterminous United States↗

USGS2017

Temporospatial dynamics and public health significance of bacterial flora identified on a major leatherback turtle (Dermochelys coriacea) nesting beach in the Southern Caribbean

Grande Riviere beach, on the island of Trinidad, supports the largest nesting population of leatherback turtles in the Caribbean region. Throughout the nesting season, nests are naturally disturbed by newly nesting females, resulting in egg breakage and loss of some nest viability. This environment is ideal for the growth and proliferation of microorganisms. The range of bacterial flora present in beach sand and egg shells was examined, with emphasis on bacteria that may pose a threat to public and animal health. The extent to which the bacterial load and genera on the beach changed throughout the season was also assessed. Twenty-five genera were identified, with Pseudomonas spp. found to be the most predominant environmental bacteria. Four genera identified possess zoonotic potential, while five additional genera are known to be of public and animal health significance. Distinct shifts in the density and distribution of bacteria were observed along the beach from early to peak nesting season. Shifts were seen across heavily traversed zones, thus highlighting the potential exposure threats posed to beach visitors and animals alike. Further studies aimed at speciating this population of bacteria, as well as isolating potential fungal pathogens may mitigate this threat. Identification of bacterial agents that are specifically pathogenic to leatherback turtles, turtle eggs, hatchlings and those who may interact with these animals will serve to enhance and guide efforts to better conserve this species and protect the health of all who visit this ecologically significant site.

Grande Riviere beach↗

USGS2018

Diatom floras in lakes in the Ruby Mountains and East Humboldt Range, Nevada, USA: A tool for assessing high-elevation climatic variability

Local conditions, including lake size, depth, bathymetric profile, watershed characteristics, and timing and extent of ice cover determine the characteristics of diatom floras, and how those assemblages respond to short and long-term changes in climate. The diatom assemblages from fourteen sediment samples collected from marginal and profundal zones of seven lakes in the Ruby Mountains and East Humboldt Range of northeastern Nevada are characterized in order to identify the factors affecting controlling species diversity, equitability, and assemblage structure. Principle component analysis delineates three depth-controlled diatom assemblages: shallow (~1), medium (~11 m), and deep (>12 m). The shallowest samples are characterized by a diverse benthic assemblage, the medium depth sample is dominated by small fragilarioid taxa, and, the deepest samples, while not dominated by planktonic species, show an increase in their abundance. In general, diatom assemblages in shallower samples exhibit higher diversity and greater equitability.

Nevada↗

USGS1902

Fossil flora of the John Day basin, Oregon

For a number of years I have been gradually accumulating material for a thorough revision of the Tertiary floras of the Pacific slope. Fossil plants are known to occur at numerous points within this area, and their study and identification has already furnished valuable data bearing on the geological history of the region, and when still further exploited it is confidently expected that they will afford more exact data for the use of geologists. This investigation is progressing satisfactorily, and at no distant day it is hoped to have it in form for final publication. From time to time various members of the United States Geological Survey, as well as others not connected with this organization, have sent in small collections of fossil plants for determination. These have been studied and reported upon as fully as the condition of the problem permitted, so that the determinations could be immediately available to geologists, but with the reservation that none of the questions could be fully settled until all known material had been studied and properly correlated. The rich fossil plant deposits in the John Day Basin, as set forth more fully in the historical account which follows, have been known for a period of nearly fifty years, but their study has been carried on in a more or less desultory manner. There has also been considerable confusion as to the horizons whence these plants came. As various species of plants described originally from the John Day region were detected in various other localities in Oregon, and in surrounding areas, as central Washington, western Idaho, and northern California, it became more than ever apparent that a thorough study of all material obtainable from this type area would be necessary before any definite or satisfactory conclusions could be reached. The immediate incentive for this revision was furnished by the receipt of a considerable collection of plants, made by Dr. John C. Merriam in 1900 while he was in charge of an expedition into this region made under the auspices of the University of California. When these plants were submitted to me for study, it was thought possible to present their description, together with a revision of our knowledge of the previously known forms, within a space sufficiently small to permit the publication of the matter as an appendix to a paper on the general geology of the area, then in preparation by Dr. Merriam. But it soon became apparent that this could not be adequately done within the space available, and a short preliminary report was prepared for and published by Dr. Merriam. The results of a complete restudy of all available fossil plant material from the John Day Basin are now presented. I wish to record my great indebtedness to Dr. Merriam, who not only accompanied me at a considerable personal sacrifice on a trip through the region in 1901, but placed unreservedly at my disposal all material bearing in any way on the problem then in the paleontological museum of the University of California. To Dr. Arthur Hollick I am indebted for the loan of all material from the John Day region belonging to Columbia University, and now deposited in the New York Botanical Garden at Bronx Park. This material, together with the rich collections belonging to the United States National Museum, represents practically all now known to have come from the John Day Basin.

Oregon↗

USGS1887

Types of the Laramie flora

I have in preparation a work on the flora of the Laramie group, in which will be described and figured a very large number of fossil plants, most of which were collected by myself in the seasons of 1881 and 1883 and the elaboration of which has occupied most of my time since the latter date.

Bulletin↗

USGS1920

An Eocene flora from trans-Pecos Texas

During the fall of 1916 I received a small collection of fossil plants which had been obtained during a geologic reconnaissance of the trans-Pecos region of Texas, by Charles Lawrence Baker. A preliminary report was sent to Mr. Baker in November of that year and was quoted in his discussion of the geology of that region. I have since made a careful study of the collection, and although it contains only a few species the occurrence of fossil plans in this region is worthy of more definite and detailed record, especially as these plants enabled me to assign a definite age to the beginning of the igneous activity of the region and to establish correlations between the floras of the Mississippi embayment and the Rocky Mountain Region.

Professional Paper↗

USGS1923

Additions to the flora of the Wilcox group

A rather full account of the extensive flora contained in the lower Eocene strata of the Mississippi embayment which are referred to the Wilcox group was published in 1916. At that time it was not possible to obtain sections of the numerous specimens of petrified wood that had been collected from these beds. These woods have since been sectioned and studied, and it seems eminently desirable to place the results of this study on record, for although much of the material had suffered greatly from decay before silicification, some of it is fairly well preserved and shows, among other results, that conifers were individually much more plentiful during Wilcox time than would be inferred from the almost total absence of their foliage in the very large collections of remains of this class that have been studied.

Texas↗

USGS1917

The physical conditions indicated by the flora of the Calvert formation

The object of the present paper is to give a summary of the small flora preserved in the Miocene diatomaceous beds of the Calvert formation in the District of Columbia and Virginia, and more especially to discuss its bearing on the physical conditions of the Calvert epoch. Subsequent to the middle Eocene the next abundant marine fauna preserved along the middle Atlantic coast is that of the Calvert formation of the Chesapeake group. Although Miocene faunas so low in the stratigraphic column are known south of Virginia only in the vicinity of Porters Landing, Savannah River, closely related but younger Miocene faunas extend southward at least as far as Florida, where the containing formation rests unconformably on beds in which occur the warmer-water faunas of the Apalachicola group.

District of Columbia, Virginia↗

USGS1974

Seasonal variation of the upper digestive tract yeast flora of feral pigeons

Feral pigeons were sampled over a 16-month period to determine whether their normal yeast flora varied according to season. Candida albicans and Saccharomyces telluris occurred during the entire sampling period, with C. albicans reaching its highest levels between August and January and S. telluris peaking from March through May. Candida krusei was present for 10 months but exhibited no predictable variation in density. Candida tropicalis , C. guilliermondii and Geotrichum were isolated on several occasions while C. lusitaniae , C. pseudotropicalis and Torulopsis glabrata were each isolated once. The high levels of infection and frequency of occurrence of some yeast species make the feral pigeon highly suspect as a carrier and disseminator of potentially pathogenic yeast.

Journal of Wildlife Diseases↗

USGS1972

Normal yeast flora of the upper digestive tract of some wild columbids

Seven species of pigeons and doves were cultured for yeasts in the upper digestive tract. The following list gives the isolation rate for each columbid species and the yeasts cultured from them: feral pigeon Colwnha livia (Gmelin) 95% — Candida albicans (Robin) Berkhout, C. tropicalis (Castellani) Berkhout, C. krusei (Cast.) Berkhout, C. guilliermondii (Cast.) Langeron et Guerra, Torulopsis glabrata (Anderson) Lodder et De Vries, Saccharomyces telluris Van der Walt, and Geotrichum sp.; white-crowned pigeon ( C. leucocephala Linnaeus) 56% — S. telluris ; mourning dove ( Zenaidura macroura Linnaeus) 24% — C. albicans , C. tropicalis , C. guilliermondii , and Geotrichum sp.; passerine ground dove ( Collumbigallina passerina Linnaeus) 20% — C. parapsilosis (Ashford) Langeron et Talice, Kloeckera apiculata (Reess Emend. Klocker) Janke; zenaida dove ( Zenaida auritu Temminck) 16% — C. albicans , C. guilliermondii , and T. glabrata ; one moustasche dove ( Geotrygon mystacea Gosse) — C. guilliermondii ; ringed turtle dove ( Streptopelia rizoria Linnaeus) 14% — C. albicans and Geotrichum sp. No signs of disease could be seen in the 139 birds that were examined, and it was concluded that these yeasts comprise a part of the columbid's normal microbial flora.

Journal of Wildlife Diseases↗

USGS2014

Preliminary analysis of the role of lake basin morphology on the modern diatom flora in the Ruby Mountains and East Humboldt Range, Nevada, USA

As paleolimnologists, we often look at the world through a 5-cm-diameter hole in the bottom of a lake, and although a number of studies have shown that a single core in the deepest part of a lake does not necessarily reflect the entire diatom flora, time and money often limit our ability to collect more than one core from a given site. This preliminary study is part of a multidisciplinary research project to understand Holocene climate variability in alpine regions of the Great Basin, and ultimately, to compare these high elevation records to the better studied pluvial records from adjacent valleys, in this case, the Ruby Valley.

Nevada↗

USGS2013

Vascular flora of saline lakes in the southern high plains of Texas and eastern New Mexico

Saline lakes and freshwater playas form the principal surface hydrological feature of the High Plains of the Southern Great Plains. Saline lakes number less than 50 and historically functioned as discharge wetlands with relatively consistent water availability due to the presence of one or more springs. Currently, less than ten saline lakes contain functional springs. A survey of vascular plants at six saline lakes in the Southern High Plains of northwest Texas and one in eastern New Mexico during May and September 2009 resulted in a checklist of 49 species representing 16 families and 40 genera. The four families with the most species were Asteraceae (12), Amaranthaceae (8), Cyperaceae (5), and Poaceae (12). Non-native species (Bromus catharticus, Poa compressa, Polypogon monspeliensis, Sonchus oleraceus, Kochia scoparia, and Tamarix ramosissima) accounted for 10% of the total species recorded. Whereas nearly 350 species of vascular plants have been identified in playas in the Southern High Plains, saline lakes contain a fraction of this species richness. The Southern High Plains saline lake flora is regionally unique, containing taxa not found in playas, with species composition that is more similar to temperate desert wetlands of the Intermountain Region and Gulf Coastal Plain of North America.

New Mexico, Texas↗

USGS2022

Diverse native island flora shows rapid initial passive recovery after exotic herbivore removal on Santa Rosa Island, California

Removing exotic vertebrates from islands is an increasingly common and potentially effective strategy for protecting biodiversity. Yet, surprisingly few studies evaluate large-scale effects of island removals on native plants. We surveyed 431 hectares of habitat in 7 canyons on Santa Rosa Island just after exotic herbivore control began (1994–1996), and again after two herbivore species had been eradicated and ~ 90% of herbivores removed (2010–2012). We searched for 68 endemic and/or rare native plant taxa, mapping and recording abundances for the 39 found. Initially most of these 39 species were absent from most canyons (79.9% species-canyon combinations). Nearly 35% of absences changed to presences by 2010–2012, while only 5.5% of presences changed to absences. Thirty-six of these 39 species increased in total area, and 38 increased in total abundance. Graminoids increased more and shrubs less than other life histories, for both apparent colonizations and abundances. Beta diversity and species turnover between canyons was high at both surveys. Although a diversity of the 39 located taxa showed substantial gains, nearly half remained uncommon in 2010–2012. These results reinforce the devastating effects of exotic vertebrate herbivores on island native plants, particularly long-lived, slow-growing species. They also demonstrate significant potential benefits of exotic herbivore removal even without other active restoration, not only for vegetative cover but for a number of rare taxa. Our surveys were more spatially extensive than most post-removal studies; high spatial turnover in these data suggests that larger-scale monitoring may be critical to capture full effects of exotic animal removal.

California↗