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At least 37 records · Page 2Linked to original sources
USGS2010

Minimizing effects of over-water docks on federally listed fish stocks in McNary Reservoir: A literature review for criteria

McNary Lock and Dam were completed in 1953, creating McNary Reservoir, or Lake Wallula. The shoreline of the reservoir is federally owned and as a result the U.S. Army Corps of Engineers (USACE) has certain land and fish habitat management responsibilities to balance with other multipurpose benefits. The Endangered Species Act (ESA) listing of Columbia and Snake River salmon stocks has changed the management of salmon harvest, hydropower operations, hatchery practices, and habitat management in recent years. There are 12 salmon Oncorhynchus spp., steelhead Oncorhynchus mykiss, and bull trout Salvelinus confluentus evolutionarily significant units (ESU‘s) that use this reach of the Columbia River at one or more stages in their life history. Of those 12, 8 are listed as threatened or endangered under the federal Endangered Species Act. The entire portion of the Columbia River in the Hanford Reach and McNary Reservoir is designated critical habitat for seven ESA-listed salmon species. The USACE is in the process of updating the 1983 McNary Lakeshore Management Plan. The updated Shoreline Plan provides criteria for private use of the federal shoreline of McNary Reservoir, specifically the permitting of private docks, over-water structures, and modifications to shoreline vegetation by adjacent land owners. The previous Shoreline Plan was written prior to the federal listing of salmon species. At the request of the USACE, the purpose of this report is to review information from the literature and determine the extent to which the criteria proposed by USACE for the docks and over-water structures are supported by the current body of scientific knowledge.

Oregon, Washington↗
USGS2007

Bathymetry of Walker Lake, West-Central Nevada

Walker Lake lies within a topographically closed basin in west-central Nevada and is the terminus of the Walker River. Much of the streamflow in the Walker River is diverted for irrigation, which has contributed to a decline in lake-surface altitude of about 150 feet and an increase in dissolved solids from 2,500 to 16,000 milligrams per liter in Walker Lake since 1882. The increase in salinity threatens the fresh-water ecosystem and survival of the Lahontan cutthroat trout, a species listed as threatened under the Endangered Species Act. Accurately determining the bathymetry and relations between lake-surface altitude, surface area, and storage volume are part of a study to improve the water budget for Walker Lake. This report describes the updated bathymetry of Walker Lake, a comparison of results from this study and a study by Rush in 1970, and an estimate of the 1882 lake-surface altitude. Bathymetry was measured using a single-beam echosounder coupled to a differentially-corrected global positioning system. Lake depth was subtracted from the lake-surface altitude to calculate the altitude of the lake bottom. A Lidar (light detection and ranging) survey and high resolution aerial imagery were used to create digital elevation models around Walker Lake. The altitude of the lake bottom and digital elevation models were merged together to create a single map showing land-surface altitude contours delineating areas that are currently or that were submerged by Walker Lake. Surface area and storage volume for lake-surface altitudes of 3,851.5-4,120 feet were calculated with 3-D surface-analysis software. Walker Lake is oval shaped with a north-south trending long axis. On June 28, 2005, the lake-surface altitude was 3,935.6 feet, maximum depth was 86.3 feet, and the surface area was 32,190 acres. The minimum altitude of the lake bottom from discrete point depths is 3,849.3 feet near the center of Walker Lake. The lake bottom is remarkably smooth except for mounds near the shore and river mouth that could be boulders, tree stumps, logs, or other submerged objects. The echosounder detected what appeared to be mounds in the deepest parts of Walker Lake, miles from the shore and river mouth. However, side-scan sonar and divers did not confirm the presence of mounds. Anomalies occur in two northwest trending groups in northern and southern Walker Lake. It is hypothesized that some anomalies indicate spring discharge along faults based on tufa-like rocks that were observed and the northwest trend parallel to and in proximity of mapped faults. Also, evaporation measured from Walker Lake is about 50 percent more than the previous estimate, indicating more water is flowing into the lake from sources other than the Walker River. Additional studies need to be done to determine what the anomalies are and whether they are related to the hydrology of Walker Lake. Most differences in surface area and storage volume between this study and a study by Rush in 1970 were less than 1 percent. The largest differences occur at lake-surface altitudes less than 3,916 feet. In general, relations between lake-surface altitude, surface area, and storage volume from Rush's study and this study are nearly identical throughout most of the range in lake-surface altitude. The lake-surface altitude in 1882 was estimated to be between 4,080 feet and 4,086 feet with a probable altitude of 4,082 feet. This estimate compares well with two previous estimates of 4,083 feet and 4,086 feet. Researchers believe the historic highstand of Walker Lake occurred in 1868 and estimated the highstand was between 4,089 feet and 4,108 feet. By 1882, Mason Valley was predominantly agricultural. The 7-26 feet decline in lake-surface altitude between 1868 and 1882 could partially be due to irrigation diversions during this time.

Scientific Investigations Report↗
USGS2021

Challenges in updating habitat suitability models: An example with the lesser prairie-chicken

Habitat loss from land-use change is one of the top causes of declines in wildlife species of concern. As such, it is critical to assess and reassess habitat suitability as land cover and anthropogenic features change for both monitoring and developing current information to inform management decisions. However, there are obstacles that must be overcome to develop consistent assessments through time. A range-wide lek habitat suitability model for the lesser prairie-chicken ( Tympanuchus pallidicinctus ), currently under review by the U. S. Fish and Wildlife Service for potential listing under the Endangered Species Act) was published in 2016. This model was based on lek data from 2002 to 2012, land cover data ranging from 2001 to 2013, and anthropogenic features from circa 2011, and has been used to help guide lesser prairie-chicken management and anthropogenic development actions. We created a second iteration model based on new lek surveys (2015 to 2019) and updated predictor layers (2016 land cover and cleaned/ updated anthropogenic data) to evaluate changes in lek suitability and to quantify current range-wide habitat suitability. Only three of 11 predictor variables were directly comparable between the iterations, making it difficult to directly assess what predicted changes resulted from changes in model inputs versus actual landscape change. The second iteration model showed a similar positive relationship with land cover and negative with anthropogenic features to the first iteration, but exhibited more variation among candidate models. Range-wide, more suitable habitat was predicted in the second iteration. The Shinnery Oak Ecoregion, however, exhibited a loss in predicted suitable habitat which could be due to predictor source changes. Iterated models such as this are important to ensure current information is being used in conservation and development decisions.

Colorado, Kansas, New Mexico, Oklahoma, Texas↗
USGS2007

Relation Between Selected Water-Quality Variables, Climatic Factors, and Lake Levels in Upper Klamath and Agency Lakes, Oregon, 1990-2006

Growth and decomposition of dense blooms of Aphanizomenon flos-aquae in Upper Klamath Lake frequently cause extreme water-quality conditions that have led to critical fishery concerns for the region, including the listing of two species of endemic suckers as endangered. The Bureau of Reclamation has asked the U.S. Geological Survey (USGS) to examine water-quality data collected by the Klamath Tribes for relations with lake level. This analysis evaluates a 17-year dataset (1990-2006) and updates a previous USGS analysis of a 5-year dataset (1990-94). Both univariate hypothesis testing and multivariable analyses evaluated using an information-theoretic approach revealed the same results-no one overarching factor emerged from the data. No single factor could be relegated from consideration either. The lack of statistically significant, strong correlations between water-quality conditions, lake level, and climatic factors does not necessarily show that these factors do not influence water-quality conditions; it is more likely that these conditions work in conjunction with each other to affect water quality. A few different conclusions could be drawn from the larger dataset than from the smaller dataset examined in 1996, but for the most part, the outcome was the same. Using an observational dataset that may not capture all variation in water-quality conditions (samples were collected on a two-week interval) and that has a limited range of conditions for evaluation (confined to the operation of lake) may have confounded the exploration of explanatory factors. In the end, all years experienced some variation in poor water-quality conditions, either in timing of occurrence of the poor conditions or in their duration. The dataset of 17 years simply provided 17 different patterns of lake level, cumulative degree-days, timing of the bloom onset, and poor water-quality conditions, with no overriding causal factor emerging from the variations. Water-quality conditions were evaluated for their potential to be harmful to the endangered sucker species on the basis of high-stress thresholds-water temperature values greater than 28 degrees Celsius, dissolved-oxygen concentrations less than 4 milligrams per liter, and pH values greater than 9.7. Few water temperatures were greater than 28 degrees Celsius, and dissolved-oxygen concentrations less than 4 milligrams per liter generally were recorded in mid to late summer. In contrast, high pH values were more frequent, occurring earlier in the season and parallel with growth in the algal bloom. The 10 hypotheses relating water-quality variables, lake level, and climatic factors from the earlier USGS study were tested in this analysis for the larger 1990-2006 dataset. These hypotheses proposed relations between lake level and chlorophyll-a, pH, dissolved oxygen, total phosphorus, and water temperature. As in the previous study, no evidence was found in the larger dataset for any of these relations based on a seasonal (May-October) distribution. When analyzing only the June data, the previous 5-year study did find evidence for three hypotheses relating lake level to the onset of the bloom, chlorophyll-a concentrations, and the frequency of high pH values in June. These hypotheses were not supported by the 1990-2006 dataset, but the two hypotheses related to cumulative degree-days from the previous study were: chlorophyll-a concentrations were lower and onset of the algal bloom was delayed when spring air temperatures were cooler. Other relations between water-quality variables and cumulative degree-days were not significant. In an attempt to identify interrelations among variables not detected by univariate analysis, multiple regressions were performed between lakewide measures of low dissolved-oxygen concentrations or high pH values in July and August and six physical and biological variables (peak chlorophyll-a concentrations, degree-days, water temperature, median October-May discharg

Scientific Investigations Report↗
USGS2024

Sea turtle density surface models along the United States Atlantic coast

Spatially explicit estimates of marine species distribution and abundance are required to quantify potential impacts from human activities such as military training and testing, fisheries interactions, and offshore energy development. There are 4 protected species of sea turtle (loggerhead, green, Kemp’s ridley, and leatherback) commonly found along the east coast of the USA, our study area, and which require impact assessments. Data from 7 different survey organizations were used to create density surface models for the 4 sea turtle species utilizing 1.2 million km of line-transect surveys. A substantial portion (29.7%) of available sightings were not identified to the species level. Not including these sightings would underestimate density, so a conditional random forest model was used to assign unidentified sightings to species. Higher densities of loggerhead, green, and Kemp’s ridley sea turtles were predicted south of the Outer Banks in cool months, transitioning northwards in late spring to occupy seasonal neritic habitats. The highest leatherback densities were predicted off the coasts of Georgia and Florida. Leatherbacks were also predicted throughout offshore areas. The predicted distribution patterns generally matched satellite tracking and strandings data, indicating the models reproduced established seasonal movements. Surveys rarely detect sea turtles smaller than 40 cm, so these age classes are not represented. The models are the first for the study area to apply availability bias estimates developed in or near the study area and attempt to classify unidentified sightings to the species level, providing an updated, critical tool for conservation management along the eastern seaboard.

Connecticut, Delaware, Florida, Georgia, Maine, Ma↗
USGS2015

An updated conceptual model of Delta Smelt biology: Our evolving understanding of an estuarine fish

The main purpose of this report is to provide an up-to-date assessment and conceptual model of factors affecting Delta Smelt (Hypomesus transpacificus) throughout its primarily annual life cycle and to demonstrate how this conceptual model can be used for scientific and management purposes. The Delta Smelt is a small estuarine fish that only occurs in the San Francisco Estuary. Once abundant, it is now rare and has been protected under the federal and California Endangered Species Acts since 1993. The Delta Smelt listing was related to a step decline in the early 1980s; however, population abundance decreased even further with the onset of the “pelagic organism decline” (POD) around 2002. A substantial, albeit short-lived, increase in abundance of all life stages in 2011 showed that the Delta Smelt population can still rebound when conditions are favorable for spawning, growth, and survival. In this report, we update previous conceptual models for Delta Smelt to reflect new data and information since the release of the last synthesis report about the POD by the Interagency Ecological Program for the San Francisco Estuary (IEP) in 2010. Specific objectives include: 1. Provide decision makers with a practical tool for evaluating difficult trade-offs associated with management and policy decisions. 2. Provide scientists with a framework from which they can formulate and evaluate hypotheses using qualitative or quantitative models. 3. Provide the general public with a new way of learning about Delta Smelt and their habitat. Our updated conceptual model describes the habitat conditions and ecosystem drivers affecting each Delta Smelt life stage, across seasons and how the seasonal effects contribute to the annual success of the species. The conceptual model consists of two nested and linked levels of increasing specificity. The general life cycle conceptual model for four Delta Smelt life stages (adults, eggs and larvae, juveniles, and subadults) includes stationary ecosystem components and dynamic environmental drivers, habitat attributes, and Delta Smelt responses. The more detailed life stage transition conceptual models for each of the four Delta Smelt life stages describe relationships between environmental drivers, key habitat attributes, and the responses of Delta Smelt to habitat attributes as they transition from one life stage to the next. Our analyses and conceptual model show that good larval recruitment is essential for setting the stage for a strong year class; however, increased growth and survival through subsequent life stages are also needed to achieve and sustain higher population abundance. We used our conceptual model to generate 16 hypotheses about the factors that may have contributed to the 2011 increase in Delta Smelt relative abundance. We then evaluated these hypotheses by comparing habitat conditions and Delta Smelt responses in the wet year 2011 to those in the prior wet year 2006 and in the drier years 2005 and 2010. Larval recruitment was similarly high in both wet years and lower in the drier antecedent years, but juvenile and adult abundance increased only in 2011. In 2005 and 2006, the population was limited by very poor survival from the larval to the juvenile life stage. We found that in 2011, Delta Smelt may have benefitted from a combination of favorable habitat conditions throughout the year, including: 1. Adults and larvae benefitted from prolonged cool spring water temperatures, high 2011 winter and spring outflows which reduced entrainment risk and possibly improved other habitat conditions, and possibly enhanced food availability in late spring. 2. Juveniles benefitted from cool water temperatures in late spring and early summer as well as from improved food availability and low levels of harmful Microcystis. 3. Subadults also benefitted from improved food availability and from favorable habitat conditions in the large, low salinity zone (salinity 1-6) located more toward Suisun Bay,

California↗
USGS2023

Annotated bibliography of scientific research on greater sage-grouse published from October 2019 to July 2022

Integrating recent scientific knowledge into management decisions supports effective natural resource management and can lead to better resource outcomes. However, finding and accessing scientific knowledge can be time consuming and costly. To assist in this process, the U.S. Geological Survey (USGS) created a series of annotated bibliographies on topics of management concern for western lands. Previously published reports introduced a methodology for preparing annotated bibliographies to facilitate integration of recent, peer-reviewed science into resource management decisions. Therefore, relevant text from those efforts is reproduced here and built on to incorporate new information. The greater sage-grouse (Centrocercus urophasianus; hereafter “GRSG”) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” under the Endangered Species Act was in part a result of a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the USGS has reviewed and summarized the scientific literature published since January 1, 2015. Our most recent GRSG literature summary was published in 2020 (Carter and others, 2020) and included products published through October 2, 2019. Here, we consider products published between October 2, 2019, and July 21, 2022. We compiled and summarized peer-reviewed journal articles, data products, and formal technical reports (such as U.S. Department of Agriculture Forest Service General Technical Reports and USGS Open-File Reports) on greater sage-grouse. We first systematically searched three reference databases and three government databases using the search phrase “greater sage-grouse.” We refined the initial list of products by removing (1) duplicates, (2) publications not published as research, data products, or scientific review articles in peer-reviewed journals or as formal technical reports, and (3) products for which greater sage-grouse was not a research focus or the study did not present new data or findings about greater sage-grouse. We summarized each product using a consistent structure (background, objectives, methods, location, findings, and implications) and identified management topics addressed by each product; for example, species and population characteristics. We also identified projects that provided new geospatial data. The review process for this annotated bibliography included two initial internal colleague reviews of each summary, requesting input on each summary from an author of the original publication, and formal peer review. Our initial searches resulted in 221 total products, of which 147 met our criteria for inclusion. Across products summarized in the annotated bibliography, broad-scale habitat characteristics, behavior or demographics, site-scale habitat characteristics, habitat selection, and population estimates or targets were the most commonly addressed management topics. The online version of this bibliography, which will be available on the Science for Resource Managers tool ( https://apps.usgs.gov/science-for-resource-managers ), will be searchable by topic, location, and year, and will include links to each original publication. The studies compiled and summarized here may inform planning and management actions that seek to maintain and restore sagebrush landscapes and GRSG populations across the GRSG range.

Open-File Report↗
USGS2016

Adaptive management for improving species conservation across the captive-wild spectrum

Conservation of endangered species increasingly envisages complex strategies that integrate captive and wild management actions. Management decisions in this context must be made in the face of uncertainty, often with limited capacity to collect information. Adaptive management (AM) combines management and monitoring, with the aim of updating knowledge and improving decision-making over time. We provide a guide for managers who may realize the potential of AM, but are unsure where to start. The urgent need for iterative management decisions, the existence of uncertainty, and the opportunity for learning offered by often highly-controlled captive environments create favorable conditions for AM. However, experiments and monitoring may be complicated by small sample sizes, and the ability to control the system, including stochasticity and observability, may be limited toward the wild end of the spectrum. We illustrate the key steps to implementing AM in threatened species management using four case studies, including the management of captive programs for cheetah (Acinonyx jubatus) and whooping cranes (Grus americana), of a translocation protocol for Arizona cliffroses Purshia subintegra and of ongoing supplementary feeding of reintroduced hihi (Notiomystis cincta) populations. For each case study, we explain (1) how to clarify whether the decision can be improved by learning (i.e. it is iterative and complicated by uncertainty) and what the management objectives are; (2) how to articulate uncertainty via alternative, testable hypotheses such as competing models or parameter distributions; (3) how to formally define how additional information can be collected and incorporated in future management decisions.

Biological Conservation↗
USGS2024

Growth, survival, and cohort formation of juvenile Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California—2021–22 monitoring report

Executive Summary The work reported in this publication provides updated data and interpretation for sampling years 2015 and 2022 of the juvenile monitoring project. The study objectives, background, study area, species description, and methods remained the same or similar throughout the years, while the executive summary, results, and discussion were updated each year. Therefore much of this paper was originally presented in previous reports (Bart and others 2020a, b; Bart and others, 2021; Burdick and others, 2016; Burdick and others, 2018; Martin and others, 2022) and is repeated here for the reader’s convenience. Populations of federally endangered Lost River ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) in Upper Klamath Lake, Oregon, and Clear Lake Reservoir (hereinafter, Clear Lake), California, are experiencing long-term decreases in abundance. Upper Klamath Lake populations are decreasing not only because of adult mortality, which is relatively low, but also because they are not being balanced by recruitment of young adult suckers into adult spawning aggregations. Long-term monitoring of juvenile sucker populations is conducted to (1) determine if there are annual and species-specific differences in production, survival, and growth; (2) better understand when juvenile sucker mortality is greatest; and (3) identify potential causes of high juvenile sucker mortality particularly in Upper Klamath Lake. The U.S. Geological Survey (USGS) monitoring program, begun in 2015, tracks cohorts through summer months and among years in Upper Klamath and Clear Lakes. Data on juvenile suckers captured in trap nets are used to provide information on annual variability in age-0 sucker production, juvenile sucker apparent survival, growth, species composition, and health. Upper Klamath Lake indices of year-class strength suggest that the 2022 age-0 cohort is the lowest since standardized monitoring began. The 2021 cohort, like most cohorts, had moderately low catch rates their first year of life, with a steep drop off during the second year. Although the 2020 cohort persisted through the September 2022 sampling, this cohort was sparsely represented after the first year with no representatives from this cohort captured from July 2021 through July 2022. Despite apparently low fall through spring apparent survival, the relatively large 2019 cohort persisted in our 2020–21 samples, but has not been detected since June 2021. Klamath largescale ( Catostomus snyderi ) and shortnose suckers were only differentiated from each other starting in 2020. Shortnose suckers dominated the age-1 catch in 2020 and 2022, whereas age-1 Klamath largescale suckers were slightly more prevalent in 2021. Although there were occasionally age-2 and older suckers captured, none of these fish were Lost River suckers. Except for 2015, 2017, and 2021, there were more age-0 Lost River suckers than presumed shortnose suckers in Upper Klamath Lake. However, in all years sampled, there were more age-1 presumed shortnose suckers than Lost River suckers. Age distribution of suckers captured in Clear Lake indicates greater juvenile survival than in Upper Klamath Lake. Most juvenile suckers captured throughout the years were from the 2016 and 2017 cohorts; however, by 2022 most of these fish were no longer susceptible to standard trap nets and were not as prevalent in 2022 juvenile catches, and these suckers presumedly recruited to the adult population. As the 2016 and 2017 cohorts catches declined, so did the catch in overall numbers of suckers. Excluding age-0 catches, the 2016 cohort catches peaked at age-3 and the 2017 catches peaked at age-2. In 2022, the majority of the catch was composed of age-3 to age-5 suckers. The majority of suckers captured in Clear Lake during this multiyear project were classified as the combination of Klamath largescale suckers and shortnose suckers from the Lost River Basin, from the 2016 and 2017 cohorts. The few suckers identified as Lost River or definitive shortnose suckers were from the 2016 and 2017 cohorts. A lack of age-0 suckers captured in Clear Lake during years with low spawning tributary inflow or lake levels suggested that low water prevented spawning and year class formation. However, recent data indicate that some cohorts with Klamath largescale and shortnose sucker genetics that were not captured as age-0 suckers were detected in later years at age-1 or age-2. This finding indicates that juvenile suckers in Clear Lake may spend one or more years in the tributaries and that these cohorts may primarily be represented by Klamath largescale suckers. The first 7 years of this monitoring program indicated different patterns in recruitment and survival of juvenile suckers between Upper Klamath and Clear Lakes. Since the monitoring program began in 2015, age-0 sucker catch rates, interpreted as indices of year-class strength, were greatest in Upper Klamath Lake in 2016 and 2019. In those years, Lost River suckers made up the majority of age-0 sucker catches. However, in 2017 and 2020, the age-1 sucker catches from these cohorts were mainly composed of shortnose suckers or suckers with genetic markers of both Klamath largescale and shortnose suckers, indicating a low first year survival for Lost River suckers even when age-0 catches were high. Age-0 suckers do not fully recruit to our sampling gear in Upper Klamath Lake until August, experience high mortality by September, and are almost undetectable in subsequent years. In Clear Lake, suckers are often not captured until age-1 or age-2 and juvenile annual survival appears much greater; however, there does appear to be a drop-off in catch rates as the suckers age and become less susceptible to the fishing gear.

California, Oregon↗
USGS2021

Gopherus agassizii

A provisional Red List Assessment of the widespread Desert Tortoise, Gopherus agassizii ( sensu lato ), was performed at a Desert Tortoise Council workshop in 2010 and updated by the IUCN Tortoise and Freshwater Turtle Specialist Group (TFTSG) in 2011, at which time the Mojave Desert subpopulation, now considered G. agassizii ( sensu stricto ) following taxonomic analysis and splitting into three separate species ( G. agassizii , G. morafkai , and G. evgoodei ), was assessed as Critically Endangered A2bce+A4bce based on population reduction (decreasing density), habit loss of over 80% over three generations (90 years), including past reductions and predicted future declines, as well as the effects of disease (upper respiratory tract disease / mycoplasmosis). Gopherus agassizii ( sensu stricto ) comprises tortoises in the most well-studied 30% of the larger range; this portion of the original range has seen the most human impacts and is where the largest past population losses had been documented. A recent rigorous range-wide population reassessment of G. agassizii ( sensu stricto ) has demonstrated continued adult population and density declines of about 90% over three generations (two in the past and one ongoing) in four of the five G. agassizii recovery units and inadequate recruitment with decreasing percentages of juveniles in all five recovery units. As such, we reaffirm the prior assessment of the taxonomically restricted Mojave Desert Tortoise, G. agassizii , as Critically Endangered, and add criterion “a” for direct population observations: CR A2abce+A4abce. The previously defined widespread species G. agassizii ( sensu lato ) was last assessed as Vulnerable on the IUCN Red List in 1996; a separate assessment currently in progress by the TFTSG for the Sonoran Desert Tortoise, G. morafkai (previously considered part of G. agassizii ) has provisionally assessed that species as Vulnerable.

Arizona, California, Nevada, Utah↗
USGS2025

Mortality of fledged whooping cranes in the Aransas-Wood Buffalo Population

Maintaining accurate mortality records for endangered species is important for guiding management and conservation actions. Mortalities of whooping cranes ( Grus americana ) in the Aransas-Wood Buffalo Population (AWBP) are documented in published records from 1950 through 2010. This paper documents publicly available records of known mortalities from 2011 through 2023, and updates historic records from 1950 to 2010. Public sightings and telemetry carcass records were restricted to fledged whooping cranes from the AWBP and stratified by confirmed, suspected, and unknown causes across the annual range (i.e., summer, migration, and winter). This mortality update provides more certainty associated with available carcass data and reduces discrepancies in existing published information.

Texas↗
USGS2016

Facilitating the inclusion of nonmarket values in Bureau of Land Management planning and project assessments—Final report

Executive Summary This report summarizes the results of a series of field-based case studies conducted by the U.S. Geological Survey (USGS) to (1) evaluate the use of nonmarket values in Bureau of Land Management (BLM) planning and project assessments, (2) update existing technical resources for measuring those values, and (3) provide guidance to field staff on the use of nonmarket values. Four BLM pilot sites participated in this effort: Canyons of the Ancients National Monument in Colorado, Red Cliffs and Beaver Dam Wash National Conservation Areas in Utah, BLM’s Taos Field Office in New Mexico, and BLM's Tuscarora Field Office in Nevada. The focus of the case studies was on practical applications of nonmarket valuation. USGS worked directly with BLM field staff at the pilot sites to demonstrate the process of considering nonmarket values in BLM decisionmaking and document the questions, challenges, and opportunities that arise when tying economic language to projects. As part of this effort, a Web-based toolkit, available at https://my.usgs.gov/benefit-transfer/ , was updated and expanded to help facilitate benefit transfers (that is, the use of existing economic data to quantify nonmarket values) and qualitative discussions of nonmarket values. A total of 53 new or overlooked nonmarket valuation studies comprising 494 nonmarket value estimates for various recreational activities and the preservation of threatened, endangered, and rare species were added to existing databases within this Benefit Transfer Toolkit. In addition, four meta-regression functions focused on hunting, wildlife viewing, fishing, and trail use recreation were developed and added to the Benefit Transfer Toolkit. Results of this effort demonstrate that there are two main roles for nonmarket valuation in BLM planning. The first is to improve the decisionmaking process by contributing to a more comprehensive comparison of economic benefits and cost when evaluating resource tradeoffs for National Environmental Policy Act analyses. The second is to use economic language and information on economic values, either qualitative or quantitative, to improve the ability to communicate the economic significance of the resources provided by BLM-managed lands. Findings also indicate that the use of existing economic data to quantify nonmarket values (that is, benefit transfer) poses unique challenges because of the scarcity of both resource data and existing valuation studies focused on resources and sites managed by BLM. This highlights the need for improvements in the collection of resource data at BLM sites, especially visitor use data, as well as an opportunity for BLM’s Socioeconomics Program to strategically identify priority areas, in terms of both resources and geographic locations, where primary valuation studies could be conducted and the results used for future benefit transfers. Finally, whereas qualitative discussions of nonmarket values do not facilitate the comparison of monetized values, they can provide a manageable next step forward in providing more comprehensive information on nonmarket values for BLM plans and project assessments.

Open-File Report↗
USGS1988

Conservation of North American rallids

The Rallidae are a diverse group in their habitat selection, yet most North American species occur in or near wetlands As a consequence, most species are subject to habitat enhancement or perturbation from waterfowl management programs. The overall effects of these management programs relative to rallid conservation have been assessed for few species, and there is a need for synthesis of such information. In the cases of some species or raves, population status is not known, and suggested directions for conservation and management are needed. Rare, endangered, or status undetermined species or races often occur in areas where related species are classified as game birds, and the effects of such hunting on rarer forms are not known. Their generally secretive nature, the endangered status of several races and populations, and continued loss of habitat and threats to present habitat, warrant an examination of the conservation status of the North American taxa in this group. In 1977, a committee of the International Association of Fish and Wildlife Agencies summarized available information on management and biology of American Coots ( Fulica americana ), rails, and gallinules in North America (Holliman 1977). That summary was intended to provide relatively complete information on conservation of these species, and also to provide guidance for research within the U.S. Fish and Wildlife Service's (FWS) Accelerated Research Program for Webless Migratory Shore and Upland Game Birds (ARP). Subsequently, a number of rallid studies were funded under this program. The program was eliminated in 1982, following substantial research activities on North American rallids. Since the demise of the ARP, additional research on rallids in North America has focused on an area the International Association of Fish and Wildlife Agencies report failed to cover in detail--that of endangered rallids in the U.S. and their possessions. Most of these studies have been of threatened and endangered taxa in western coastal marshes. This report updates and summarizes information on North American rallids since the ARP report and identifies the major conservation problems of this group with the intent of focusing future efforts on these priority issues. Consideration of island forms occurring within U.S. possessions is beyond the scope of this report, mainly because of the special conservation problems associated with their insular distribution. The major topics include habitat requirements, effects of habitat and hunting management techniques currently practiced on wetland areas, and conservation of endangered and threatened populations. Research needs are identified. Habitats of the American Coot are similar to those of several waterfowl species, and the biology of coots is considered only as it is typical of rails in general.

The Wilson Bulletin↗
USGS2021

An updated assessment of status and trend in the distribution of the Cascades frog (Rana cascadae) in Oregon, USA

Conservation efforts need reliable information concerning the status of a species and their trends to help identify which species are in most need of assistance. We completed a comparative evaluation of the occurrence of breeding for Cascades Frog ( Rana cascadae ), an amphibian that is being considered for federal protection under the U.S. Endangered Species Act. Specifically, in 2018–2019 we resurveyed 67 sites that were surveyed approximately 15 y prior and fit occupancy models to quantify the distribution of R. cascadae breeding in the Cascade Range, Oregon, USA. Furthermore, we conducted a simulation exercise to assess the power of sampling designs to detect declines in R. cascadae breeding at these sites. Our analysis of field data combined with our simulation results suggests that if there was a decline in the proportion of sites used for R. cascadae breeding in Oregon, it was likely a < 20% decline across our study period. Our results confirm that while R. cascadae detection probabilities are high, methods that allow the sampling process to be explicitly modeled are necessary to reliably track the status of the species. This study demonstrates the usefulness of investing in baseline information and data quality standards to increase capacity to make similar comparisons for other species in a timeframe that meet the needs of land managers and policy makers.

Oregon↗
USGS2025

Status and trends of forest bird populations at Hakalau Forest National Wildlife Refuge, 1987–2024

Since 1985, the Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex (hereafter, Hakalau) has protected the largest endemic forest bird diversity in the State of Hawaii. This includes three endangered and one threatened species and their habitats. Hakalau’s vast area (155 km2), mostly high elevation (>1500 m) montane forest, provides refuge from avian malaria (Plasmodium relictum) vectored by introduced southern house mosquitoes (Culex quinquefasciatus). However, increases in the seasonal temperatures optimal for disease carrying mosquitoes associated with climate change have coincided with recent downward trends of native species in the closed forest area of the refuge (1450–1750 m), where disease is most likely to occur. Therefore, to inform refuge management with the most updated information on these populations and their trends, we analyzed forest bird survey data collected using point transect distance sampling with new survey data from 2021–2024. We stratified our analysis across management units, including the open forest and pasture since 1987, and the closed forest since 1999, and across four elevation ranges (<1500, 1500–1700, 1700–1900, and >1900 m) since 1999. We used distance sampling to estimate species- and strata-specific abundances and applied log-linear regression to detect trends across the timeseries. We found a continuation of previous trends, wherein most native forest birds declined in the closed forest strata (mostly below 1700 m) and increased in the highest elevation and pasture strata. Patterns were highly species-specific for the three lower elevations and open forest strata. ‘Apapane (Himatione sanguinea) and warbling white-eye (Zosterops japonicus), the most abundant native and introduced bird species, respectively, increased in nearly all strata. ‘I‘iwi (Drepanis coccinea) and Hawai‘i ‘amakihi (Chlorodrepanis virens virens), also common, decreased in closed forest, were stable in open forest, and increased in pasture. Both species were generally stable or increasing across all elevation bands, except Hawaiʻi ʻamakihi decreased in the below 1500 m and the 1500–1700 m elevation bands. All three of the federally endangered forest bird species declined in closed forest. Hawai‘i ‘ākepa (Loxops coccineus) also declined in the open forest and 1700–1900 m band and was the only species to decline overall. ‘Akiapōlā‘au (Hemignathus wilsoni) declined in closed forest but increased overall. ‘Alawī (Loxops mana, also known as Hawai‘i creeper) also decreased in the closed forest, but was stable to increasing in most strata and remained stable overall. Hawaiʻi ʻelepaio (Chasiempis sandwichensis) declined in closed forest, was stable in open forest and most elevation strata, and increased in pasture. ʻŌmaʻo (Myadestes obscurus) was stable in open and closed forest and at middle elevations and increased in the pasture. Introduced red-billedleiothrix (Leiothrix lutea) declined in closed forest, was stable in the open forest and at most elevations, and increased in the pasture. Coinciding with these changes, seasonal conditions for vector occurrence have continued to lengthen in the lower elevation strata through 2024, while Hakalau’s outplanting efforts continued to increase forest cover in the pasture, suggesting that disease-free habitat may have decreased in the closed forest and increased in the pasture. The declines in the closed forest and mixture of trends in the open forest and middle elevations bands suggest emigration into the higher elevation strata from lower elevation strata, and that possible threats have suppressed forest birds even at elevations >1500 m.

Hawaii↗
USGS2026

High-resolution transboundary vegetation community maps of the Sonoran and Mojave Desert ecoregion to support critical landscape conservation planning and habitat management needs

We produced a 30-m resolution binational land cover map of Bird Conservation Region 33 (BCR 33) for the U.S. North American Bird Conservation Initiative. The region covers large portions of the Sonoran and Mojave Deserts. The map can support the U.S. Fish and Wildlife Service (FWS) Migratory Bird Program’s recovery planning efforts and constitutes the first known binational land cover dataset spanning sections of the United States–Mexico border and using a consistent classification system for both countries. The mapped region includes 152 distinct land cover classes, covering a total area of 38,421,453 ha (148,345 mi 2 ), of which 13,148,345 ha (52,706 mi 2 ) are located in Mexico and 24,770,640 ha (95,639 mi 2 ) in the United States. We primarily used Landsat 8 (OLI) imagery, supplemented by limited ground surveys from two field campaigns, drone-based aerial data, and existing vegetation classification frameworks from both countries. The classification applied a data-fusion approach integrating 30-m Landsat 8 imagery, decadal phenology metrics from vegetation indices, and a random forest model trained mainly with datasets from a comprehensive national mapping project from the U.S. Geological Survey (USGS) GAP Analysis Project (GAP) and federal wildland fire agencies’ Landscape Fire and Resource Management Planning Tools (LANDFIRE) (GAP/LANDFIRE) [United States side] and the National Institute of Statistics and Geography (INEGI) [Mexico side] as well as land cover maps and opportunistic open-access and field observations. Mapping of the full BCR 33 region was carried out in two phases: 1) Phase I, the prototype map, covered a smaller portion of the transboundary area and identified 31 land cover classes, and 2) Phase II, the full BCR 33 map (refer to Figure 1), which resulted in 152 land cover classes. Using a Random Forest classifier, we achieved an overall prediction accuracy of 92% for the Phase I map and 87% for the Phase II full region map. This slight decrease can be attributed to working on a larger, more complex area with a greater number of land cover classes. No formal validation was conducted, aside from using a subset of the collected field observations and training data to assess model performance during and after training. The training sites were further verified using Google Earth (Google, 2026) imagery. Two undergraduate students who worked for over a year visually inspected imagery and open access public images to confirm each training site during model training using in-house developed, online, visual tools. A portion of this field training data was reserved for model validation, and the corresponding results are to be presented in later sections. The project developed an end-to-end, medium- and fine-resolution remote sensing–based data fusion mapping approach. This effort produced a map (Nagler et al., 2025) and the online tools to support a dynamic, live, online map for visualizing the transboundary vegetation communities in BCR 33. The toolset is currently hosted by the University of Arizona (UofA) Vegetation Index and Phenology (VIP) Lab to support FWS partners (https://vip.arizona.edu/viplab_data_explorer?LCM_BCR33). The online map is designed to allow rapid updates using new training, validation, or correction data, making it dynamic and maintainable. The approach we took established a framework for rapid updating and correction of land cover maps, as the model can be quickly retrained with new field observations, updated training data, or other sources. This enables dynamic mapping and change detection of the region’s vegetation. This framework is an advance in data fusion and crowdsourced mapping of complex, vulnerable regions, providing support to regional stakeholders and the wider user community. This transboundary map can inform the protection, conservation, and restoration of vegetation, habitat, and ecosystems, particularly for threatened and endangered species across the two nations using consistent and harmonized binational mapping systems. Beyond supporting land management decisions and stakeholders in the transboundary desert ecoregions, this BCR 33 mapping effort establishes a foundation for future rapid, low-cost, cross-border land cover mapping that can benefit and advance ecosystem management.

Arizona, Baja California, California, Nevada, Sina↗
USGS2023

Updates to CE-QUAL-W2 models for select U.S. Army Corps of Engineers reservoirs in the Willamette Valley Project and an inter-reservoir reach of the Middle Fork Willamette River, northwestern Oregon

Mechanistic models capable of simulating hydrodynamics and water temperature in rivers and reservoirs are valuable tools for investigating thermal conditions and their relation to dam operations and streamflow in river basins where upstream water storage and management decisions have an important influence on river reaches with threatened fish populations. In particular, models allow managers to investigate how new, untried operations or hypothetical structures might influence streamflow and temperature conditions downstream. CE-QUAL-W2 is a two-dimensional (laterally averaged) hydrodynamic water-quality model that has previously been used to investigate the downstream effects of dam operations and other anthropogenic influences on stream temperature in the Willamette River Basin in northwestern Oregon, a region with two populations of fish species designated as threatened under the Endangered Species Act. By linking CE-QUAL-W2 river models to models of upstream, large Willamette Valley Project dams and reservoirs, these models can be used to investigate how dam operations at individual dams can influence streamflow and thermal conditions in downstream river reaches as an integrated system. Integrated model simulations that include the large dams and reservoirs linked to downstream river reaches can help managers develop a better understanding of tradeoffs associated with potential retrofits or operational changes across the multipurpose dams in the Willamette Valley Project, the effect of dam management on downstream tributaries and the Willamette River, and the resulting potential effect on threatened fish populations and habitat conditions. River models capable of simulating river corridors downstream from U.S. Army Corps of Engineers dams were previously updated and integrated to simulate conditions that occurred from March through October of 2011 (a cool and wet year), 2015 (a hot and dry year), and 2016 (a moderately hot and dry year) using CE-QUAL-W2 version 4.2. These river models encompass the following: Coast Fork Willamette and Middle Fork Willamette Rivers, the Row River, and Fall Creek downstream from Cottage Grove, Dexter, Dorena, and Fall Creek Dams, respectively; South Fork McKenzie River downstream from Cougar Dam; McKenzie River downstream from its confluence with the South Fork McKenzie River; South Santiam River downstream from Foster Dam; North Santiam River downstream from Big Cliff Dam; and Willamette River from its start at the confluence of the Middle Fork Willamette and Coast Fork Willamette Rivers to Willamette Falls (river mile 26.0; near West Linn, Oregon). This report documents model modifications, boundary condition data sources or estimation methods, and goodness-of-fit statistics for six CE-QUAL-W2 reservoir models and one river model upstream from the existing river models. These models simulate (1) Hills Creek Lake; (2) Lookout Point Lake and Dexter Reservoir on the Middle Fork Willamette River; (3) the Middle Fork Willamette River reach between Hills Creek Dam upstream and Lookout Point Lake downstream; (4) Cougar Reservoir on the South Fork McKenzie River; (5) Green Peter Lake on the Middle Santiam River and Foster Lake on the South Santiam River; and (6) Detroit Lake and (7) Big Cliff Reservoir on the North Santiam River. These CE-QUAL-W2 models were built by a variety of researchers to simulate a range of conditions in past years; this report documents their upgrade to U.S. Geological Survey (USGS) edition 7 of version 4.2 of CE-QUAL-W2 and updates each model to simulate conditions from January through December of 2011, 2015, and 2016. Also included in this report is an explanation of modifications to the CE-QUAL-W2 source code that constitute USGS edition 7 of CE-QUAL-W2 version 4.2. Each of the models described in this report can be run in isolation or linked to downstream models as a “system model” to simulate conditions in tributaries and (or) in the Willamette Valley Project as a whole. As part of the model updates described in this report, some model parameters were adjusted to improve stability or decrease model error, and boundary conditions including meteorological, hydrologic, and temperature inputs were developed and updated for model years 2011, 2015, and 2016, as necessary. In some cases, the data sources used to drive previous model versions were no longer available, which required the development and checking of new data sources or estimation techniques. Goodness-of-fit statistics for outflow from the dams and in simulated river reaches generally show a good model fit, with the models simulating subdaily water temperatures at most comparable locations with a mean absolute error of generally less than 1 degree Celsius (°C) and a reasonably low bias. Model simulation of the thermal vertical profiles in each reservoir also produced an overall mean absolute error of generally less than 1 °C for all 3 years, with the exception of the Hills Creek Lake Model and the Cougar Reservoir Model in years when the reservoirs did not fill (2015 and 2016). Both of these models have known calibration issues and tend to be sensitive to the choice of certain structural parameters in the model. Overall, the calibration process was focused on obtaining model settings that led to realistic water temperature predictions in all 3 years (2011, 2015, and 2016) without over-calibrating specifically to any single year. A complete investigation of model error for these reservoir submodels was beyond the scope of this investigation but could be undertaken in the future if better model performance for these two reservoirs is desired.

Oregon↗
USGS2017

Book review: A chorus of cranes: The cranes of North America and the world

Cranes (Gruidae) are widely distributed throughout the world, have lived on Earth for several million years, and currently reside on five continents. Archaeological evidence and historical references suggest that humans have interacted with and been captivated by cranes for many thousands of years (e.g., Leslie 1988, Muellner 1990 ). A glimpse of our reverence for these birds can be found in A Chorus of Cranes by Paul A. Johnsgard, with photographs by Thomas D. Mangelsen. Many species of cranes are currently identified as threatened or endangered, and their future will likely rest in the hands of humans; this book presents their plight and some of the measures that have been taken to conserve them. Dr. Johnsgard, an emeritus professor at the University of Nebraska-Lincoln, is a prolific writer, having written more than 60 books in ornithology and other topics. This book serves as the latest update of previous efforts concerning crane biology, conservation, and management. A review without making comparisons to his past works is difficult, yet this assessment will primarily focus on the content of the current book, with little reference to past endeavors. A Chorus of Cranes: The Cranes of North America and the World by Paul A. Johnsgard. 2015. University Press of Colorado, Boulder, CO, USA. x + 208 pp., 38 color photographs, 41 figures. ISBN 978-1-60732-436-2. $23.95 (Ebook). ISBN 978-1-60732-436-9.

The Condor↗