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At least 37 records · Page 2Linked to original sources
USGS2009

Experimental Advanced Airborne Research Lidar (EAARL) Data Processing Manual

The Experimental Advanced Airborne Research Lidar (EAARL) is an example of a Light Detection and Ranging (Lidar) system that utilizes a blue-green wavelength (532 nanometers) to determine the distance to an object. The distance is determined by recording the travel time of a transmitted pulse at the speed of light (fig. 1). This system uses raster laser scanning with full-waveform (multi-peak) resolving capabilities to measure submerged topography and adjacent coastal land elevations simultaneously (Nayegandhi and others, 2009). This document reviews procedures for the post-processing of EAARL data using the custom-built Airborne Lidar Processing System (ALPS). ALPS software was developed in an open-source programming environment operated on a Linux platform. It has the ability to combine the laser return backscatter digitized at 1-nanosecond intervals with aircraft positioning information. This solution enables the exploration and processing of the EAARL data in an interactive or batch mode. ALPS also includes modules for the creation of bare earth, canopy-top, and submerged topography Digital Elevation Models (DEMs). The EAARL system uses an Earth-centered coordinate and reference system that removes the necessity to reference submerged topography data relative to water level or tide gages (Nayegandhi and others, 2006). The EAARL system can be mounted in an array of small twin-engine aircraft that operate at 300 meters above ground level (AGL) at a speed of 60 meters per second (117 knots). While other systems strive to maximize operational depth limits, EAARL has a narrow transmit beam and receiver field of view (1.5 to 2 milliradians), which improves the depth-measurement accuracy in shallow, clear water but limits the maximum depth to about 1.5 Secchi disk depth (~20 meters) in clear water. The laser transmitter [Continuum EPO-5000 yttrium aluminum garnet (YAG)] produces up to 5,000 short-duration (1.2 nanosecond), low-power (70 microjoules) pulses each second. Each pulse is focused into an illumination area that has a radius of about 20 centimeters on the ground. The pulse-repetition frequency of the EAARL transmitter varies along each across-track scan to produce equal cross-track sample spacing and near uniform density (Nayegandhi and others, 2006). Targets can have varying physical and optical characteristics that cause extreme fluctuations in laser backscatter complexity and signal strength. To accommodate this dynamic range, EAARL has the real-time ability to detect, capture, and automatically adapt to each laser return backscatter. The backscattered energy is collected by an array of four high-speed waveform digitizers connected to an array of four sub-nanosecond photodetectors. Each of the four photodetectors receives a finite range of the returning laser backscatter photons. The most sensitive channel receives 90% of the photons, the least sensitive receives 0.9%, and the middle channel receives 9% (Wright and Brock, 2002). The fourth channel is available for detection but is not currently being utilized. All four channels are digitized simultaneously into 65,536 samples for every laser pulse. Receiver optics consists of a 15-centimeter-diameter dielectric-coated Newtonian telescope, a computer-driven raster scanning mirror oscillating at 12.5 hertz (25 rasters per second), and an array of sub-nanosecond photodetectors. The signal emitted by the pulsed laser transmitter is amplified as backscatter by the optical telescope receiver. The photomultiplier tube (PMT) then converts the optical energy into electrical impulses (Nayegandhi and others, 2006). In addition to the full-waveform resolving laser, the EAARL sensor suite includes a down-looking 70-centimeter-resolution Red-Green-Blue (RGB) digital network camera, a high-resolution color infrared (CIR) multispectral camera (14-centimeter-resolution), two precision dual-frequency kinematic carrier-phase global positioning system (GPS) receivers, and an

Open-File Report↗
USGS2018

Efficiency of sampling sunfishes using snorkeling in clear, warmwater streams of the south-central United States

The continued evaluation of fish-sampling gears and methods is essential to identify their applicability across environmental conditions and among species. Although limited by visibility, snorkeling has potential advantages relative to other fish-sampling gears in wadeable streams (e.g., minimally intrusive, cost effective, and appropriate in deeper areas). Clear water is common to warm-water streams; however, the use of snorkeling for monitoring stream-fish populations has largely focused on cold-water systems. To assess relative snorkeling efficiency in warm-water streams, we compared standardized single-pass snorkel counts to tow-barge electrofishing abundance estimates for six sunfishes (Centrarchidae) in the Ozark Highlands ecoregion of northwest Oklahoma and southwest Missouri under relatively similar environmental conditions (i.e., clear water, cobble substrates, low-flow conditions). Snorkeling efficiency was variable among sunfishes and consistently low for species with cryptic traits and habitat use. We also did not detect cryptic sunfishes (i.e., a single individual was not encountered) using snorkeling at multiple stream reaches where estimated abundance was > 50 within a 0.5- to 1.0-km stream reach. Our findings indicate that snorkeling has applications for monitoring sunfish populations and assemblages when using an abundance estimator or accounting for imperfect detection; however, it is inappropriate for estimating population size of cryptic sunfishes. We encourage continued research into the applicability of snorkeling to estimate warm-water stream fish abundance.

Missouri, Oklahoma↗
USGS2025

Modeling floods, sediment entrainment, and downstream debris flows from hypothetical breaches of the blockage at Spirit Lake, Washington

This report describes a modeling investigation by the U.S. Geological Survey (USGS) of hazards in the Toutle and Cowlitz River valleys posed by hypothetical outburst floods from Spirit Lake, Washington. A massive debris avalanche resulting from the collapse of Mount St. Helens’ north flank during the May 18, 1980, eruption blocked Spirit Lake’s natural outlet into the North Fork Toutle River. Lacking a natural outlet, subsequent runoff in the Spirit Lake watershed contributed to a rising lake level, elevating the potential for debris-dam breaching or catastrophic failure. The influence of highly erodible bed sediment in the upper North Fork Toutle River on downstream flood and debris-flow dynamics and extent is assessed in this study. Simulations of clear-water (non-erosive) outburst floods were used as a baseline and compared to erosive flows that entrain large volumes of material and transition into debris flows along their flow path, revealing the influence of entrainment on hazard extent. Clear-water floods were modeled with the shallow water equations. Erosive flows were modeled with a two-phase granular fluid model that accommodates mobilization and incorporation of sediment from the bed into the overlying flow and resultant changes in flow rheology across a wide range of solid concentrations, from dilute suspensions to dense-granular debris flows. Entrainment of bed material was found to substantially increase the total flow volume (total volume of transported water and sediment is approximately 150 percent of the water volume for non-erosive flows). Erosive flows are shown to exhibit higher flow-front speeds and faster downstream arrival times than non-erosive flows, consistent with volume amplification effects near the actively mobilizing flow front. However, the larger total volume of transported material does not necessarily lead to an enhancement of total volume throughput (cumulative discharge) or inundation extent (total affected area) for all locations along the entire flow path; while entrainment leads to the displacement of a larger volume of material overall, much of this dislocated material (water and sediment) deposits upstream from the distal extent of the flows. These results are consistent with energetic considerations of initial potential energy and granular shear resistance.

Washington↗
USGS1985

Spirit Lake dam-failure flood routing assessment

Potential clear-water floodflows resulting from uncontrolled breaching by Spirit Lake of a debris dam deposited by the May 18 , 1980, eruption of Mount St. Helens, Washington, were evaluated. U.S. Geological Survey dam-break model K-634 was utilized, first to compute clear-water flood hydrographs for various hypothetical breach scenarios, and then to hydraulically route them downstream to the mouth of the Toutle River. Dam-break computations were obtained for 12 breach-development scenarios. Eight of the scenarios modeled breaches caused by overtopping of the June 1982 crest of the debris dam, while the other four modeled breaches resulting from overtopping of the debris dam at a possible future crest altitude of 3,490 feet. Equal numbers of scenarios, six each, were modeled for breach development durations of 0.25 hour and 1.0 hour. Peak discharges and times of arrival at selected locations for scenarios with breach development durations of 1.0 hour are presented in tables. Peak discharges computed for dam-break scenarios with breach crest widths of 400 feet are almost twice the magnitude of those computed for scenarios identical in all other respects, but with widths of 200 feet. Peak discharges computed for breaches caused by overtopping of the debris dam at an altitude of 3,531.8 feet were generally found to be roughly five times greater than those caused by overtopping at an altitude of 3,490 feet, if the breaches had identical crest elevations and crest widths. Decreases in peak discharge from Spirit Lake to the mouth of the Toutle River ranged from 16 to 26 percent for the scenarios modeled. This lack of significant attenuation is primarily due to the large volume and surface area of Spirit lake (in excess of 360,000 acre-feet and 3,000 acres, respectively, for all scenarios modeled), which result in the continued discharge of high flows long after breach development is complete. The degree of attenuation is also minimized by the generally steep narrow valleys through which the North Fork Toutle and Toutle Rivers flow. Elapsed time from beginning of breach development to arrival of peak discharges at the mouth of the Toutle River ranged from 4.3 to 7.4 hours for the scenarios modeled. (USGS)

Open-File Report↗
USGS1995

Pattern of shoreline spawning by sockeye salmon in a glacially turbid lake: Evidence for subpopulation differentiation

Alaskan sockeye salmon Oncorhynchus nerka typically spawn in lake tributaries during summer (early run) and along clear‐water lake shorelines and outlet rivers during fall (late run). Production at the glacially turbid Tustumena Lake and its outlet, the Kasilof River (south‐central Alaska), was thought to be limited to a single run of sockeye salmon that spawned in the lakeˈs clear‐water tributaries. However. up to 40% of the returning sockeye salmon enumerated by sonar as they entered the lake could not be accounted for during lake tributary surveys, which suggested either substantial counting errors or that a large number of fish spawned in the lake itself. Lake shoreline spawning had not been documented in a glacially turbid system. We determined the distribution and pattern of sockeye salmon spawning in the Tustumena Lake system from 1989 to 1991 based on fish collected and radiotagged in the Kasilof River. Spawning areas and times were determined for 324 of 413 sockeye salmon tracked upstream into the lake after release. Of these, 224 fish spawned in tributaries by mid‐August and 100 spawned along shoreline areas of the lake during late August. In an additional effort, a distinct late run was discovered that spawned in the Kasilof River at the end of September. Between tributary and shoreline spawners, run and spawning time distributions were significantly different. The number of shoreline spawners was relatively stable and independent of annual escapement levels during the study, which suggests that the shoreline spawning component is distinct and not surplus production from an undifferentiated run. Since Tustumena Lake has been fully deglaciated for only about 2,000 years and is still significantly influenced by glacier meltwater, this diversification of spawning populations is probably a relatively recent and ongoing event.

Alaska↗
USGS2012

Modification of selected South Carolina bridge-scour envelope curves

Historic scour was investigated at 231 bridges in the Piedmont and Coastal Plain physiographic provinces of South Carolina by the U.S. Geological Survey in cooperation with the South Carolina Department of Transportation. These investigations led to the development of field-derived envelope curves that provided supplementary tools to assess the potential for scour at bridges in South Carolina for selected scour components that included clear-water abutment, contraction, and pier scour, and live-bed pier and contraction scour. The envelope curves consist of a single curve with one explanatory variable encompassing all of the measured field data for the respective scour components. In the current investigation, the clear-water abutment-scour and live-bed contraction-scour envelope curves were modified to include a family of curves that utilized two explanatory variables, providing a means to further refine the assessment of scour potential for those specific scour components. The modified envelope curves and guidance for their application are presented in this report.

South Carolina↗
USGS2017

Clearing the waters: Evaluating the need for site-specific field fluorescence corrections based on turbidity measurements

In situ fluorescent dissolved organic matter (fDOM) measurements have gained increasing popularity as a proxy for dissolved organic carbon (DOC) concentrations in streams. One challenge to accurate fDOM measurements in many streams is light attenuation due to suspended particles. Downing et al. (2012) evaluated the need for corrections to compensate for particle interference on fDOM measurements using a single sediment standard in a laboratory study. The application of those results to a large river improved unfiltered field fDOM accuracy. We tested the same correction equation in a headwater tropical stream and found that it overcompensated fDOM when turbidity exceeded ∼300 formazin nephelometric units (FNU). Therefore, we developed a site-specific, field-based fDOM correction equation through paired in situ fDOM measurements of filtered and unfiltered streamwater. The site-specific correction increased fDOM accuracy up to a turbidity as high as 700 FNU, the maximum observed in this study. The difference in performance between the laboratory-based correction equation of Downing et al. (2012) and our site-specific, field-based correction equation likely arises from differences in particle size distribution between the sediment standard used in the lab (silt) and that observed in our study (fine to medium sand), particularly during high flows. Therefore, a particle interference correction equation based on a single sediment type may not be ideal when field sediment size is significantly different. Given that field fDOM corrections for particle interference under turbid conditions are a critical component in generating accurate DOC estimates, we describe a way to develop site-specific corrections.

Limnology and Oceanography: Methods↗
USGS2001

Geohydrology and limnology of Walden Pond, Concord, Massachusetts

The trophic ecology and ground-water contributing area of Walden Pond, in Concord and Lincoln, Mass., were investigated by the U.S. Geological Survey in cooperation with the Massachusetts Department of Environmental Management from April 1997 to July 2000. Bathymetric investigation indicated that Walden Pond (24.88 hectares), a glacial kettle-hole lake with no surface inlet or outlet, has three deep areas. The maximum depth (30.5 meters) essentially was unchanged from measurements made by Henry David Thoreau in 1846. The groundwater contributing area (621,000 square meters) to Walden Pond was determined from water-table contours in areas of stratified glacial deposits and from land-surface contours in areas of bedrock highs. Walden Pond is a flow-through lake: Walden Pond gains water from the aquifer along its eastern perimeter and loses water to the aquifer along its western perimeter. Walden Pond contributing area also includes Goose Pond and its contributing area. A water budget calculated for Walden Pond, expressed as depth of water over the lake surface, indicated that 45 percent of the inflow to the lake was from precipitation (1.215 meters per year) and 55 percent from ground water (1.47 meters per year). The groundwater inflow estimate was based on the average of two different approaches including an isotope mass-balance approach. Evaporation accounted for 26 percent of the outflow from the lake (0.71 meters per year) whereas lake-water seepage to the groundwater system contributed 74 percent of the outflow (1.97 meters per year). The water-residence time of Walden Pond is approximately 5 years. Potential point sources of nutrients to ground water, the Concord municipal landfill and a trailer park, were determined to be outside the Walden Pond groundwater contributing area. A third source, the septic leach field for the Walden Pond State Reservation facilities, was within the groundwater contributing area. Nutrient budgets for the lake indicated that nitrogen inputs (858 kilograms per year) were dominated (30 percent) by plume water from the septic leach field and, possibly, by swimmers (34 percent). Phosphorus inputs (32 kilograms per year) were dominated by atmospheric dry deposition, background ground water, and estimated swimmer inputs. Swimmer inputs may represent more than 50 percent of the phosphorus load during the summer. The septic-system plume did not contribute phosphorus, but increased the nitrogen to phosphorus ratio for inputs from 41 to 59, on an atom-to-atom basis. The ratio of nitrogen to phosphorus in input loads and within the lake indicated algal growth would be strongly phosphorus limited. Nitrogen supply in excess of plant requirements may mitigate against nitrogen fixing organisms including undesirable blooms of cyanobacteria. Based on areal nutrient loading, Walden Pond is a mesotrophic lake. Hypolimnetic oxygen demand of Walden Pond has increased since a profile was measured in 1939. Currently (1999), the entire hypolimnion of Walden Pond becomes devoid of dissolved oxygen before fall turnover in late November; whereas historical data indicated dissolved oxygen likely remained in the hypolimnion during 1939. The complete depletion of dissolved oxygen likely causes release of phosphorus from the sediments. Walden Pond contains a large population of the deep-growing benthic macro alga Nitella , which has been hypothesized to promote water clarity in other clear-water lakes by sequestering nutrients and keeping large areas of the sediment surface oxygenated. Loss of Nitella populations in other lakes has correlated with a decline in water quality. Although the Nitella standing crop is large in Walden Pond, Nitella still appears to be controlled by nutrient availability. Decreasing phosphorus inputs to Walden Pond, by amounts under anthropogenic control would likely contribute to the stability of the Nitella population in the metalimnion, may reverse oxygen depletion in the hypolimnion, and decrease recycling of phosphorus from the sediments.

Massachusetts↗
USGS2016

Depth calibration and validation of the Experimental Advanced Airborne Research Lidar, EAARL-B

The original National Aeronautics and Space Administration (NASA) Experimental Advanced Airborne Research Lidar (EAARL), was extensively modified to increase the spatial sampling density and improve performance in water ranging from 3–44 m. The new (EAARL-B) sensor features a 300% increase in spatial density, which was achieved by optically splitting each laser pulse into 3 pulses spatially separated by 1.6 m along the flight track and 2.0 m across-track on the water surface when flown at a nominal altitude of 300 m. Improved depth capability was achieved by increasing the total peak laser power by a factor of 10, and incorporating a new “deep-water” receiver, optimized to exclusively receive refracted and scattered light from deeper water (15–44 m). Two clear-water missions were conducted to determine the EAARL-B depth calibration coefficients. The calibration mission was conducted over the U.S. Navy’s South Florida Testing Facility (SFTF), an established lidar calibration range located in the coastal waters southeast of Fort Lauderdale, Florida. A second mission was conducted over Lang Bank, St. Croix, U.S. Virgin Islands. The EAARL-B survey was spatially and temporally coincident with multibeam sonar surveys conducted by the National Oceanic and Atmospheric Administration (NOAA) ship Nancy Foster. The NOAA depth data range from 10–100 m, whereas the EAARL-B captured data from 0–41 m. Coefficients derived from the SFTF calibration mission were used to correct the EAARL-B data from both missions. The resulting calibrated EAARL-B data were then compared with the original reference dataset, a jet-ski-based single beam sonar dataset from the SFTF site, and the deeper NOAA data from St. Croix. Additionally, EAARL-B depth accuracy was evaluated by comparing the depth results to International Hydrographic Organization (IHO) standards. Results show good agreement between the calibrated EAARL-B data and all three reference datasets, with 95% confidence levels well within the maximum allowable total vertical uncertainty for IHO Order 1 surveys.

Journal of Coastal Research↗
USGS2016

Depth calibration of the Experimental Advanced Airborne Research Lidar, EAARL-B

Introduction The original National Aeronautics and Space Administration (NASA) Experimental Advanced Airborne Research Lidar (EAARL) was extensively modified to increase the spatial sampling density and to improve performance in water ranging from 3 to 44 meters (m). The new (EAARL-B) sensor features a higher spatial density that was achieved by optically splitting each laser pulse into three pulses spatially separated by 1.6 m along the flight track and 2.0 m across the flight track, on the water surface when flown at a nominal altitude of 300 m (984 feet). The sample spacing can be optionally increased to 1.0 m across the flight track. Improved depth capability was achieved by increasing the total peak laser power by a factor of 10 and by designing a new “deep-water” receiver, which is optimized to exclusively receive refracted and scattered light from deeper water (15–44 m). Two different clear-water flight missions were conducted over the U.S. Navy's South Florida Testing Facility (SFTF) to determine the EAARL-B calibration coefficients. The SFTF is an established lidar calibration range located in the coastal waters southeast of Fort Lauderdale, Florida. We used 23 selected polygons at 23 distinct depths to compare a reference dataset from this site to determine EAARL-B calibration constants over the depth range of 6.5 to 34 m. We also conducted a near-simultaneous single-beam jet-ski-based sonar survey of selected transects ranging from 1 to 33 m depth in the same area. The near-concurrent jet ski data were used to evaluate the EAARL-B performance over the depth range from 0.9 to 10 m. The more timely jet ski data were necessary because the primary reference dataset was 9 years old, and areas shallower than 6.5 m are dominated by shifting sand. We determined the jet ski data were not useful as a calibration reference in water deeper than 10 m due to large uncertainty in the vertical measurement introduced by the lack of any sensor orientation data, that is, for pitch, roll, and heading to correct the measured slant range to a vertical measurement. The resulting calibrated EAARL-B data were then analyzed and compared with the original reference dataset, the jet-ski-based dataset from the same Fort Lauderdale site, as well as the depth-accuracy requirements of the International Hydrographic Organization (IHO). We do not claim to meet all of the IHO requirements and standards. The IHO minimum depth-accuracy requirements were used as a reference only and we do not address the other IHO requirements such as “ Full Seafloor Search”. Our results show good agreement between the calibrated EAARL-B data and all reference datasets, with results that are within the 95 percent depth accuracy of the IHO Order 1 (a and b) depth-accuracy requirements.

Open-File Report↗
USGS1996

Phosphorus dynamics in Delavan Lake Inlet, southeastern Wisconsin, 1994

Removal of rough fish from Delavan Lake Inlet in southeastern Wisconsin transformed the inlet from a shallow, turbid-water system with few macrophytes to a clear-water system with an abundance of macrophytes and increased phosphorus concentrations. To understand the changes in the phosphorus dynamics, the U.S. Geological Survey and the U.S. Army Corps of Engineers, in cooperation with the Town of Delavan, constructed a detailed phosphorus budget for the inlet for April through September 1994. The budget included inputs from the drainage basin, atmosphere, sediments (as a function of pH and the fraction of the day under anoxic conditions), and ground water. Laboratory studies estimated phosphorus flux rates under various conditions. Field studies documented ambient conditions in the inlet and fluxes of phosphorus into and out of the inlet. Phosphorus released from the sediments was estimated by coupling the flux rates, estimated in the laboratory, with ambient conditions in the inlet. The detailed phosphorus budget indicated that the increase in phosphorus concentrations was caused primarily by elevated pH resulting from increased photosynthetic activity of the macrophytes and a high release of phosphorus from the sediments. The release of phosphorus from the sediments was the largest source of phosphorus to the inlet in the spring and summer of 1994 and in other years of low to near normal runoff; however, in years of high runoff, phosphorus input from the inlet's drainage basin was the largest source of phosphorus. A less-detailed phosphorus budget constructed for the period from February 1993 to September 1994 demonstrated that, over the entire year, runoff from the drainage basin was the dominant source in the phosphorus budget. During April-September 1994, the input of phosphorus from the inlet may especially affect the summer productivity in Delavan Lake because almost 80 percent of the phosphorus loading during this time was in the form of dissolved orthophosphate.

Wisconsin↗
USGS1990

Partitioning and bioavailability of mercury in an experimentally acidified Wisconsin lake

We studied the partitioning of mercury (Hg) among air, water, sediments and fish at Little Rock Lake, a clear water seepage lake in north-central Wisconsin. The lake was divided with a sea curtain into two basins, one acidified with sulfuric acid to pH 5.6 for two years and the other an untreated reference site (mean pH 6.1), to document the effects of acidification. Trace-metal-free protocols were used to measure Hg at the picomolar level in air and water. Total gaseous Hg in air samples averaged 2.0 ng/m 3 . Total Hg in unfiltered water samples collected in 1986 after the fall overturn averaged about 1 ng/L in the acidified and reference basins. Mercury in surficial sediments was strongly correlated with volatile matter content and ranged from 10 to about 170 ng/g (dry weight) in both basins. Total Hg concentrations in whole, calendar age-1 yellow perch ( Perca flavescens ), sampled after one year of residence in the lake, averaged 114 ng/g (fresh weight) in the reference basin and 135 ng/g in the acidified basin – a highly significant ( p < 0.01) difference. The mean whole-body burden (quantity) of Hg in age-1 perch did not differ between basins after the first year, but was significantly greater in the treatment basin than in the reference basin after the second year of acidification. Differences between the two basins in the bioaccumulation of Hg were attributed to internal (within-lake) processes that influence the bioavailability of the metal. An initial Hg budget for the treatment basin of Little Rock Lake showed that atmospheric deposition and sedimentary remobilization of Hg are potentially important processes influencing its biogeochemical cycling and uptake by fish.

Wisconsin↗
USGS1989

Whitings, a sedimentologic dilemma

Whitings, drifting clouds of water, milky because of suspended carbonate, have been claimed to originate from either the action of bottom-feeding fish or direct precipitation of calcium carbonate. Five cruises during different seasons were made to the Great Bahama Bank to collect data pertinent to the controversy. Measurements of particulate concentrations average 10 mg/liter with a maximum of 20 mg/liter of carbonate sediment suspended in whiting water, compared with an average of 1.5 mg/liter for clear water outside the whitings. The particles are dominantly acicular aragonite, but Mg calcite composes as much as 20 percent of some whitings. Sedimentation rates, measured with fixed and drifting sediment traps, were as great as 34 g/m 2 /hr. Sediment suspended in whitings aggregated into silt- and sand-size fioccules and settled to the bottom of settling tanks within six hours, even on a rocking ship. Sediment in artificial whitings, created by stirring sediment from the bottom with a shrimp trawl, settled to the bottom in about the same time. Natural whitings, on the other hand, were never observed to dissipate. Because sedimentation from whitings occurs at rates sufficient to cause dissipation of the whitings within six hours, we conclude that the natural whitings are continually replenished by direct precipitation. The search for fish in whitings utilized sidescan sonar and fathometer imaging, shrimp trawls, rotenone, remote video, and direct scuba observation. These methods and 25 years of casual observations leading to this study indicate that fish are not involved in the formation of most Bahamian whitings. Several whitings were found over rocky or sandy bottoms where there was no mud available for fish to suspend. The distance of these whitings from areas of muddy bottom precluded their having been made elsewhere by fish. Stable carbon- and oxygen-isotopic analyses and Delta 14 C activity are interpreted to indicate that the suspended sediment in whitings contains some precipitated calcium carbonate and is not merely bottom sediment stirred into suspension. Estimates indicate that the amount of new carbonate produced in whitings on the Great Bahama Bank is substantially higher than that arising from algal production. Consequently, the amount of sediment transported to deep water may be much greater than previously thought.

Journal of Sedimentary Petrology↗
USGS2015

The quality of our Nation's waters: Water quality in the Upper Floridan aquifer and overlying surficial aquifers, southeastern United States, 1993-2010

About 10 million people rely on groundwater from the Upper Floridan and surficial aquifers for drinking water. The Upper Floridan aquifer also is of primary importance to the region as a source of water for irrigation and as a source of crystal clear water that discharges to springs and streams providing recreational and tourist destinations and unique aquatic habitats. The reliance of the region on the Upper Floridan aquifer for drinking water and for the tourism and agricultural economies highlights the importance of long-term management to sustain the availability and quality of these resources.

Florida↗
USGS2004

Wave- and tidally-driven flow and sediment flux across a fringing coral reef: Southern Molokai, Hawaii

The fringing coral reef off the south coast of Molokai, Hawaii is currently being studied as part of a US Geological Survey (USGS) multi-disciplinary project that focuses on geologic and oceanographic processes that affect coral reef systems. For this investigation, four instrument packages were deployed across the fringing coral reef during the summer of 2001 to understand the processes governing fine-grained terrestrial sediment suspension on the shallow reef flat (h=1m) and its advection across the reef crest and onto the deeper fore reef. The time-series measurements suggest the following conceptual model of water and fine-grained sediment transport across the reef: Relatively cool, clear water flows up onto the reef flat during flooding tides. At high tide, more deep-water wave energy is able to propagate onto the reef flat and larger Trade wind-driven waves can develop on the reef flat, thereby increasing sediment suspension. Trade wind-driven surface currents and wave breaking at the reef crest cause setup of water on the reef flat, further increasing the water depth and enhancing the development of depth-limited waves and sediment suspension. As the tide ebbs, the water and associated suspended sediment on the reef flat drains off the reef flat and is advected offshore and to the west by Trade wind- and tidally- driven currents. Observations on the fore reef show relatively high turbidity throughout the water column during the ebb tide. It therefore appears that high suspended sediment concentrations on the deeper fore reef, where active coral growth is at a maximum, are dynamically linked to processes on the muddy, shallow reef flat.

Hawaii↗
USGS2024

Evaluation of metrics and thresholds for use in national-scale river harmful algal bloom assessments

The spatiotemporal distribution of harmful algal blooms (HABs) in rivers remains poorly understood, and there is an urgent need to develop a consistent set of metrics to better document HAB occurrences and forecast future events. Using data from seven sites in the Illinois River Basin, we computed metrics focused on HAB conditions related to excess algal growth and hypoxia. Daily mean chlorophyll and dissolved oxygen (DO) concentrations, gross primary productivity (GPP), and net ecosystem productivity (NEP) rates, focused on water quality status, identifying the timing of the transition from a clear-water to an algal dominated state. Early warning indicators (EWIs), the first-order autoregressive process (Ar1) and standard deviation (SD) of chlorophyll concentrations, focused on future events, forecasting blooms. Metrics were compared to either literature-derived or statistical-based thresholds and were normalized by total number of daily samples for an exceedance rate. Exceedances of a daily mean chlorophyll concentration averaged 50 % across all sites using a 10 µg L −1 threshold but increasing the threshold to 50 μg L −1 reduced the average exceedance rate to 5 %. The average exceedance rate for GPP (∼8 g O 2 m 2 d −1 threshold) was 15 %, similar to the daily amplitude DO concentration (∼3 mg L −1 threshold), but the average for NEP (0 g O 2 m 2 d −1 threshold) was higher, at 28 %. The number of days with at least 1 continuous DO concentration below the threshold of 5, 3, or 2 mg L −1 , had basin wide exceedance rates of 9 %, 3 %, and 2 %, respectively. Thresholds for EWIs, Ar1 and SD, were exceeded at 5 of the 7 sites with high chlorophyll concentrations and GPP rates. The correlation between proxies for algal biomass (chlorophyll concentration) and productivity (GPP) was strongest for sites in the middle region of the basin, with R 2 values between 0.54 and 0.74. Although, cyanotoxin concentrations are the most commonly used metrics by states to define an inland water HAB, there is a paucity of publicly available data. The wider availability of chlorophyll and oxygen data combined with the results from this study suggest that biomass and productivity state and event-based metrics may be a promising way to assess and predict the vulnerability of rivers to some of the deleterious effects of HABs at broad spatial scales.

Illinois, Indiana, Wisconsin↗
USGS1975

Dynamics of turbidity plumes in Lake Ontario

Large-turbidity features along the 275-kilometre long south shore of Lake Ontario were analyzed using LANDSAT-1 images. The ESIAC system developed by the Stanford Research Institute, was used to obtain enlargements and false-color renditions of turbidity plumes. After projection on a video screen, individual turbidity features were analyzed, mapped, and photographed. The Niagara River plume, as much as 500 square kilometres in area, is by far, the largest turbidity feature in the lake. Based on image tonal comparisons, turbidity in the Welland Canal is usually higher than that in any other watercourse discharging into the lake throughout the shipping season. Somewhat less turbid water enters the lake from the Port Dalhousie diversion channel and the Genesee River. Relatively clear water resulting from the deposition of suspended matter in numerous upstream lakes is discharged by the Niagara and Oswego rivers. Plume analysis corroborates the presence of a prevailing eastward flowing longshore current along the entire south shore. This current is most persistent at the Oswego River outlet but is quite variable in the Rochester embayment, where rapid shifts in water movement were occasionally detected in LANDSAT images. The position of the spring thermal bar, a zone, of maximum density water corresponding to the 4°C isotherm, was approximately located in images obtained during April 1973. Although eastward moving currents were detected on the inshore side of the thermal bar, westward moving counter currents seem to be dominant along its offshore side. Plumes generated by beach erosion were readily detected in the images. Such areas are identified by light to very light, long, narrow plumes paralleling the coastline. Extensive areas of the south shore are subject to erosion, but the most severely affected beaches are situated between Fifty Mile Pt., Ontario and Thirty Mile Pt., N.Y., along the Rochester embayment, and between Sodus Bay and Nine Mile Pt. Color illustrations of figure accession numbers EDC-010077 to EDC-010106 are available for purchase from the EROS Data Center, Sioux Falls, South Dakota 57198.

Lake Ontario↗
USGS2020

The field trip that changed the course of my career

After gobbling down a breakfast of sliced papaya, scrambled eggs, refried beans, and soft flour tacos, we gathered our gear and loaded it into the red zodiac that the station manager had assigned to us. My colleagues and I were headed to a pair of islands off the coast of Belize called Twin Cays, occupied by a unique group of tropical plants and animals adapted to a wet and saline habitat. Our ride from Carrie Bow Cay, home of the Smithsonian Institution’s field station, took about twenty minutes because of the choppy water. As we crossed the three-kilometer stretch from Carrie Bow to Twin Cays, I struggled to keep my seat on the bouncing pontoon and was soon soaked by salt spray. As we neared Twin Cays, the deep blue of the lagoon gave way to the turquoise and pale green colors of the shallow sand flats in the lee of the archipelago. Finally, the zodiac slowed, and we pulled into the calm channel separating the two islands. On either side of the channel was an intimidating tangle of tree trunks, branches, leaves, and aerial roots. The trees leaned out over the water and appeared poised to topple into the sea. However, they were perfectly still in the humid morning air and anchored solidly in place by arching prop roots. I sensed that I had entered an alien world, a waterlogged Terra Incognita that looked, smelled, and sounded like nothing I had ever experienced. As we slowly motored along, I peered more closely at the trees that fringed the shoreline. They had gnarled trunks and twisted branches that supported a canopy of dark green leaves. These trees were red mangroves or Rhizophora mangle, their scientific name, and were the dominant vegetation here. These oceanic mangrove islands were intertidal, which means that the trees were inundated twice a day by the sea. Their intimate relationship with the sea, however, was most apparent along the water’s edge. Long, drop roots plunged from the canopy to dangle in the crystal-clear water. Encrusted on the submerged portions of the mangrove roots were yellow and orange sponges, white and pink anemones, sharp-edged oysters, and feathery-green algae. The mangroves, it turned out, provided the only solid substrate for these sessile creatures. There were also mobile animals that I glimpsed as I leaned over the pontoon to peer into the pellucid water. Tiny fish flashed among the partially submerged roots as each one briefly flipped its body sideways to catch the sun glinting through the water. A school of mangrove snappers swam past the boat and disappeared under the overhanging creekbank, which created a shadowy haven from predators. Ribbons of turtlegrass, uprooted from the nearby reef flat, were draped on mangrove prop roots like green and brown tinsel. As the zodiac floated closer to shore, I spotted a mangrove tree crab, which stealthily crept up a tree trunk. In the distance, I could hear the hectoring cry of an osprey, as well as the periodic cheep-cheep of a mangrove warbler deeper in the forest. A soft breeze carried the faint odor of rotten eggs, which was caused by the microbially mediated production of hydrogen sulfide in the waterlogged soil. This was my first close-up view of Belize’s mangroves. The year was 1985. The movie “Back to the Future” had just premiered, PLO terrorists had hijacked the Italian cruise ship Achille Lauro, five people had died after ingesting cyanide-laced Tylenol, and Microsoft had just released Windows 1.0. I had recently gotten a Macintosh personal computer with 128k of memory (seemed like a lot back then) and was learning how to use Cricket Graph, my first software program. Until that point, I had been creating graphs by hand with ink-filled drawing pens, T-squares, and Letraset dry-transfer sheets. This was a time when the world seemed to be on the verge of dramatic changes—many that would impact me and my career as a scientist.

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