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At least 37 records · Page 2Linked to original sources
USGS2018

The interaction of exposure and warming tolerance determines fish species vulnerability to warming stream temperatures

Species vulnerability to climate change involves an interaction between the magnitude of change (exposure) and a species's tolerance to change. We evaluated fish species vulnerability to predicted stream temperature increases by examining warming tolerances across the Wyoming fish assemblage. Warming tolerance combines stream temperature with a thermal tolerance metric to estimate how much warming beyond current conditions a species can withstand. Brown trout, rainbow trout and burbot had the lowest warming tolerances and the highest proportion of currently occupied sites that will become unsuitable under predicted temperature increases. These most vulnerable species were coldwater species, but had neither the lowest thermal tolerances nor would they experience the greatest temperature increases. Our results highlight the importance of considering the interaction of exposure and warming tolerance when predicting climate change vulnerability and demonstrate an approach that can be applied broadly.

Wyoming↗
USGS2018

Carotenoid-based skin ornaments reflect foraging propensity in a seabird, Sula leucogaster

Carotenoid-based ornaments are common signalling features in animals. It has long been proposed that such ornaments communicate information about foraging abilities to potential mates. However, evidence linking foraging with ornamentation is largely missing from unmanipulated, free-ranging populations. To investigate this relationship, we studied a coastal population of brown booby ( Sula leucogaster brewsteri ), a seabird with a carotenoid-based gular skin ornament. δ 13 C values from both feathers and blood plasma were negatively correlated with male gular colour, indicating birds that consumed more pelagic prey in offshore locations had more ornamented skin than those that fed on nearshore, benthic prey. This relationship was supported by our GPS tracking results, which revealed longer, more offshore foraging trips among highly ornamented males. Our data show that brown booby ornaments are honest indicators of foraging propensity; a link consistent with the rarity hypothesis and potentially driven by the concentration of carotenoids found in phytoplankton versus benthic algae. Carotenoid-based ornaments may reflect foraging tendencies in animals such as coastal predators that use food webs with distinct carotenoid profiles.

Biology Letters↗
USGS2020

Wait and snap: eastern snapping turtles (Chelydra serpentina) prey on migratory fish at road-stream crossing culverts

There is growing evidence that culverts at road-stream crossings can increase fish density by reducing stream width and fish movement rates, making these passageways ideal predator ambush locations. In this study, we used a combination of videography and δ 13 C stable isotope analyses to investigate predator–prey interactions at a road-stream crossing culvert. Eastern snapping turtles ( Chelydra serpentina ) were found to regularly reside within the culvert to ambush migratory river herring ( Alosa spp.). Resident fish species displayed avoidance of the snapping turtles, resulting in zero attempted attacks on these fish. In contrast, river herring did not display avoidance and were attacked by a snapping turtle on 79% of approaches with a 15% capture rate. Stable isotope analyses identified an apparent shift in turtle diet to consumption of river herring in turtles from culvert sites that was not observed in individuals from non-culvert sites. These findings suggest that anthropogenic barriers like culverts that are designed to allow passage may create predation opportunities by serving as a bottleneck to resident and migrant fish movement.

Biology Letters↗
USGS2022

Social effects of rabies infection in male vampire bats (Desmodus rotundus)

Rabies virus (RABV) transmitted by the common vampire bat ( Desmodus rotundus ) poses a threat to agricultural development and public health throughout the Neotropics. The ecology and evolution of rabies host-pathogen dynamics are influenced by two infection-induced behavioral changes. RABV-infected hosts often exhibit increased aggression which facilitates transmission, and rabies also leads to reduced activity and paralysis prior to death. Although several studies document rabies-induced behavioral changes in rodents and other dead-end hosts, surprisingly few studies have measured these changes in vampire bats, the key natural reservoir throughout Latin America. Here, we take advantage of an experiment designed to test the safety and efficacy of an oral rabies vaccine in captive male vampire bats to quantify for the first time how rabies affects allogrooming and aggressive behaviors in the vampire bat. Compared to non-rabid vampire bats, rabid individuals reduced their allogrooming prior to death, but we did not detect increases in aggression among bats. To put our results in context, we review what is known and what remains unclear about behavioral changes of rabid vampire bats.

Biology Letters↗
USGS2024

Range-wide salamander densities reveal a key component of terrestrial vertebrate biomass in eastern North American forests

Characterizing the population density of species is a central interest in ecology. Eastern North America is the global hotspot for biodiversity of plethodontid salamanders, an inconspicuous component of terrestrial vertebrate communities, and among the most widespread is the eastern red-backed salamander, Plethodon cinereus . Previous work suggests population densities are high with significant geographic variation, but comparisons among locations are challenged by lack of standardization of methods and failure to accommodate imperfect detection. We present results from a large-scale research network that accounts for detection uncertainty using systematic survey protocols and robust statistical models. We analysed mark–recapture data from 18 study areas across much of the species range. Estimated salamander densities ranged from 1950 to 34 300 salamanders ha −1 , with a median of 9965 salamanders ha −1 . We compared these results to previous estimates for P. cinereus and other abundant terrestrial vertebrates. We demonstrate that overall the biomass of P. cinereus , a secondary consumer, is of similar or greater magnitude to widespread primary consumers such as white-tailed deer ( Odocoileus virginianus ) and Peromyscus mice, and two to three orders of magnitude greater than common secondary consumer species. Our results add empirical evidence that P. cinereus , and amphibians in general, are an outsized component of terrestrial vertebrate communities in temperate ecosystems.

Biology Letters↗
USGS2025

Viral outbreak dynamics and evolution in wildlife at the interface with humans

In this study, we used a multi-faceted approach to understand patterns of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission and persistence in a wild white-tailed deer ( Odocoileus virginianus ) population. Serology data indicated transmission of SARS-CoV-2 and persistence during the seven-month sampling period. Traditional disease modelling based on deer-to-deer transmission indicated relatively low prevalence with an R 0 of 1.9 and recovery period of 7 days; however, individual-based modelling informed by GPS tracked-movement data captured a potential transmission event. Phylogenetic analyses revealed a recurring pattern of divergent groups of deer-derived sequences with human-derived sequences falling close to each deer-derived cluster. Further, human-derived sequences were frequently sampled months prior to the deer-derived sequences, indicating repeated human to deer spillover. Using multiple types of data as well as both fine and broad scale analyses, we have characterized a pattern of localized outbreaks of SARS-CoV-2 within white-tailed deer populations that are likely recurring due to frequent spillover events. Our results suggest that while deer-to-deer transmission occurs over small spatiotemporal scales, SARS-CoV-2 persistence over longer periods and across larger regions is likely driven by repeated spillover from human populations.

Pennsylvania↗
USGS2001

Whooping cranes breeding at White Lake, Louisiana, 1939: observations by John J. Lynch, U.S. Bureau of Biological Survey

On 15 May 1939, John J. Lynch of the U.S. Bureau of Biological Survey located 13 whooping cranes (Grus americana), including 2 prefledged young, during an aerial survey near White Lake in southwestern Louisiana. His observation was the last historic record of whooping cranes breeding in the wild in the United States, and it confirmed the presence of a nonmigratory breeding population along the Gulf Coast. While reviewing old U.S. Fish and Wildlife Service files at the National Archives in 1999, we located Lynch's original 1939 field note, 2 letters, 5 photographs, and a draft manuscript describing the discovery; 4 other related letters also were found. Because of their biological and historical interest, we have reproduced the documents in this paper. A thorough assessment of the White Lake marshes as a potential site for returning nonmigratory whooping cranes to southwestern Louisiana should be conducted.

Book chapter↗
USGS1989

Methods for collection and analysis of aquatic biological and microbiological samples

The series of chapters on techniques describes methods used by the U.S. Geological Survey for planning and conducting water-resources investigations. The material is arranged under major subject headings called books and is further subdivided into sections and chapters. Book 5 is on laboratory analysis. Section A is on water. The unit of publication, the chapter, is limited to a narrow field of subject matter. "Methods for Collection and Analysis of Aquatic Biological and Microbiological Samples" is the fourth chapter to be published under Section A of Book 5. The chapter number includes the letter of the section. This chapter was prepared by several aquatic biologists and microbiologists of the U.S. Geological Survey to provide accurate and precise methods for the collection and analysis of aquatic biological and microbiological samples. Use of brand, firm, and trade names in this chapter is for identification purposes only and does not constitute endorsement by the U.S. Geological Survey. This chapter supersedes "Methods for Collection and Analysis of Aquatic Biological and Microbiological Samples" edited by P.E. Greeson, T.A. Ehlke, G.A. Irwin, B.W. Lium, and K.V. Slack (U.S. Geological Survey Techniques of Water-Resources Investigations, Book 5, Chapter A4, 1977) and also supersedes "A Supplement to-Methods for Collection and Analysis of Aquatic Biological and Microbiological Samples" by P.E. Greeson (U.S. Geological Survey Techniques of Water-Resources Investigations, Book 5, Chapter A4), Open-File Report 79-1279, 1979.

Techniques of Water-Resources Investigations↗
USGS2005

Introduced species as evolutionary traps

Invasive species can alter environments in such a way that normal behavioural decision-making rules of native species are no longer adaptive. The evolutionary trap concept provides a useful framework for predicting and managing the impact of harmful invasive species. We discuss how native species can respond to changes in their selective regime via evolution or learning. We also propose novel management strategies to promote the long-term co-existence of native and introduced species in cases where the eradication of the latter is either economically or biologically unrealistic.

Ecology Letters↗
USGS2021

Authors’ reply to letter to the editor: Continued improvement to genetic diversity indicator for CBD

We appreciate the encouraging response to our call for indicators for genetic diversity within the post-2020 Global Biodiversity Framework of the Convention on Biological Diversity, CBD (Laikre et al. 2020 ; Hoban et al. 2020 ). In agreement with us, Frankham ( 2021 ) highlights the urgent necessity for the CBD to include an indicator that tracks the maintenance of genetic diversity within populations of all species—wild and domestic. Draft CBD Headline indicators (which all CBD Parties will need to report) do not include genetic diversity within populations of wild species (CBD/SBSTTA/24/3Add.1).

Conservation Genetics↗
USGS2014

Character, distribution, and ecological significance of storm wave-induced scour in Rhode Island Sound, USA

Multibeam bathymetry, collected during NOAA hydrographic surveys in 2008 and 2009, is coupled with USGS data from sampling and photographic stations to map the seabed morphology and composition of Rhode Island Sound along the US Atlantic coast, and to provide information on sediment transport and benthic habitats. Patchworks of scour depressions cover large areas on seaward-facing slopes and bathymetric highs in the sound. These depressions average 0.5-0.8 m deep and occur in water depths reaching as much as 42 m. They have relatively steep well-defined sides and coarser-grained floors, and vary strongly in shape, size, and configuration. Some individual scour depressions have apparently expanded to combine with adjacent depressions, forming larger eroded areas that commonly contain outliers of the original seafloor sediments. Where cobbles and scattered boulders are present on the depression floors, the muddy Holocene sands have been completely removed and the winnowed relict Pleistocene deposits exposed. Low tidal-current velocities and the lack of obstacle marks suggest that bidirectional tidal currents alone are not capable of forming these features. These depressions are formed and maintained under high-energy shelf conditions owing to repetitive cyclic loading imposed by high-amplitude, long-period, storm-driven waves that reduce the effective shear strength of the sediment, cause resuspension, and expose the suspended sediments to erosion by wind-driven and tidal currents. Because epifauna dominate on gravel floors of the depressions and infauna are prevalent in the finer-grained Holocene deposits, it is concluded that the resultant close juxtaposition of silty sand-, sand-, and gravel-dependent communities promotes regional faunal complexity. These findings expand on earlier interpretations, documenting how storm wave-induced scour produces sorted bedforms that control much of the benthic geologic and biologic diversity in Rhode Island Sound.

Rhode Island↗
USGS1997

Benthic boundary layer processes in the Lower Florida Keys

This special issue of Geo-Marine Letters, "Benthic Boundary Layer Processes in the Lower Florida Keys," includes 12 papers that present preliminary results from the Key West Campaign. The Dry Tortugas and Marquesas Keys test sites were selected by a group of 115 scientists and technicians to study benthic boundary layer processes in a carbonate environment controlled by bioturbation and biogeochemical processes. Major activities included remote sediment classification; high-frequency acoustic scattering experiments; sediment sampling for radiological, geotechnical, biological, biogeochemical, physical, and geoacoustic studies; and hydrodynamic studies using an instrumented tetrapod. All these data are being used to improve our understanding of the effects of environmental processes on sediment structure and behavior.

Florida↗
USGS2007

Suboxic deep seawater in the late Paleoproterozoic: Evidence from hematitic chert and iron formation related to seafloor-hydrothermal sulfide deposits, central Arizona, USA

A current model for the evolution of Proterozoic deep seawater composition involves a change from anoxic sulfide-free to sulfidic conditions 1.8??Ga. In an earlier model the deep ocean became oxic at that time. Both models are based on the secular distribution of banded iron formation (BIF) in shallow marine sequences. We here present a new model based on rare earth elements, especially redox-sensitive Ce, in hydrothermal silica-iron oxide sediments from deeper-water, open-marine settings related to volcanogenic massive sulfide (VMS) deposits. In contrast to Archean, Paleozoic, and modern hydrothermal iron oxide sediments, 1.74 to 1.71??Ga hematitic chert (jasper) and iron formation in central Arizona, USA, show moderate positive to small negative Ce anomalies, suggesting that the redox state of the deep ocean then was at a transitional, suboxic state with low concentrations of dissolved O2 but no H2S. The presence of jasper and/or iron formation related to VMS deposits in other volcanosedimentary sequences ca. 1.79-1.69??Ga, 1.40??Ga, and 1.24??Ga also reflects oxygenated and not sulfidic deep ocean waters during these time periods. Suboxic conditions in the deep ocean are consistent with the lack of shallow-marine BIF ??? 1.8 to 0.8??Ga, and likely limited nutrient concentrations in seawater and, consequently, may have constrained biological evolution. ?? 2006 Elsevier B.V. All rights reserved.

Earth and Planetary Science Letters↗
USGS2021

Climate variability drives watersheds along a transporter-transformer continuum

We examined how climate variability affects the mobilization of material from six watersheds. We analyzed one to seven years of high-frequency sensor data from a temperate ecosystem and a tropical rainforest. We applied a windowed analysis to correlate concentration-discharge (C-Q) behavior with climate anomalies, providing insight into how hydrological and biogeochemical processes change in response to climate variability. Positive precipitation anomalies homogenized the C-Q responses for dissolved organic matter, nitrate, specific conductance and turbidity, indicating that hydrological processes dominate the C-Q signal and watersheds act as “conveyor belts” of material. In contrast, drier and warmer conditions led to C-Q behavior associated with variation in solute concentration, suggesting that biogeochemical processes are a primary control on solute export and their response to flow. Results indicate that climate variability can move watersheds along a continuum from transporter-to-transformer of biologically active solutes and responses can potentially vary by biome.

Geophysical Research Letters↗
USGS2021

Impacts of sediment removal from and placement in coastal barrier island systems

Executive Summary On June 24, 2019, Congressman Raul Grijalva of Arizona, Chair of the House Committee on Natural Resources, sent a letter to the directors of the U.S. Fish and Wildlife Service and the U.S. Geological Survey to request their assistance in answering questions regarding coastal sediment resource management within the Coastal Barrier Resources System as defined by the Coastal Barrier Resources Act (Public Law 97–348; 96 Stat. 1653; 16 U.S.C. 3501 et seq.). For the purposes of this response, coastal sediment resource management refers to the removal of sediment from one part of a barrier island system for placement in another part of the coastal system, for either hazard mitigation (for example, erosion or flood control) or coastal restoration (for example, expansion or restoration of beach, dune, and [or] marsh habitats). The specific topics of concern are as follows (paraphrased from Congressman Grijalva’s letter): 1. Disruption of coastal sediment supply resulting from sediment removal and placement, including the replenishment rate of removed sediments and impacts to other components of the barrier island system (discussed in sec. 3). 2. Physical and biological impacts of sediment removal and placement on benthic habitats (discussed in sec. 4). 3. Impacts of sediment removal and placement on fish and other marine species (discussed in sec. 5). 4. Changes in migratory bird nesting and foraging habitats resulting from sediment removal and placement (discussed in sec. 6). 5. Long-term impacts of sediment removal and placement on physical coastal resiliency (discussed in sec. 7).

Open-File Report↗
USGS2010

Limits on the adaptability of coastal marshes to rising sea level

Assumptions of a static landscape inspire predictions that about half of the world's coastal wetlands will submerge during this century in response to sea-level acceleration. In contrast, we use simulations from five numerical models to quantify the conditions under which ecogeomorphic feedbacks allow coastal wetlands to adapt to projected changes in sea level. In contrast to previous sea-level assessments, we find that non-linear feedbacks among inundation, plant growth, organic matter accretion, and sediment deposition, allow marshes to survive conservative projections of sea-level rise where suspended sediment concentrations are greater than ~20 mg/L. Under scenarios of more rapid sea-level rise (e.g., those that include ice sheet melting), marshes will likely submerge near the end of the 21st century. Our results emphasize that in areas of rapid geomorphic change, predicting the response of ecosystems to climate change requires consideration of the ability of biological processes to modify their physical environment.

Geophysical Research Letters↗
USGS1996

Water-quality, streamflow, and meteorological data for the Tualatin River Basin, Oregon, 1991-93

Surface-water-quality data, ground-water-quality data, streamflow data, field measurements, aquatic-biology data, meteorological data, and quality-assurance data were collected in the Tualatin River Basin from 1991 to 1993 by the U.S. Geological Survey (USGS) and the Unified Sewerage Agency of Washington County, Oregon (USA). The data from that study, which are part of this report, are presented in American Standard Code for Information Interchange (ASCII) format in subject-specific data files on a Compact Disk-Read Only Memory (CD-ROM). The text of this report describes the objectives of the study, the location of sampling sites, sample-collection and processing techniques, equipment used, laboratory analytical methods, and quality-assurance procedures. The data files on CD-ROM contain the analytical results of water samples collected in the Tualatin River Basin, streamflow measurements of the main-stem Tualatin River and its major tributaries, flow data from the USA wastewater-treatment plants, flow data from stations that divert water from the main-stem Tualatin River, aquatic-biology data, and meteorological data from the Tualatin Valley Irrigation District (TVID) Agrimet Weather Station located in Verboort, Oregon. Specific information regarding the contents of each data file is given in the text. The data files use a series of letter codes that distinguish each line of data. These codes are defined in data tables accompanying the text. Presenting data on CD-ROM offers several advantages: (1) the data can be accessed easily and manipulated by computers, (2) the data can be distributed readily over computer networks, and (3) the data may be more easily transported and stored than a large printed report. These data have been used by the USGS to (1) identify the sources, transport, and fate of nutrients in the Tualatin River Basin, (2) quantify relations among nutrient loads, algal growth, low dissolved-oxygen concentrations, and high pH, and (3) develop and calibrate a water- quality model that allows managers to test options for alleviating water-quality problems.

Oregon↗
USGS1997

Investigation into avian mortality in the Playa Lakes region of southeastern New Mexico: Final Report - June 1997

This Final Report is a review of work on a cooperative study undertaken by the USGS Biological Resources Division's National Wildlife Health Center (NWHC) and National Wetlands Research Center (NWRC; formerly the Southern Science Center) from 1994 through 1997. The study was initiated at the request of the Bureau of Land Management (BLM), through a request to the former National Biological Service. The Southeastern New Mexico Playa Lakes Coordinating Committee (SENMPLCC) played an important role in outlining the research needs. The initial Study Plan document, which outlines the background, objectives and methods for the first two years is available as Appendix 1. A letter indicating modifications to the Study Plan was sent to the SENMPLCC chair on April 25,1995, and is Appendix 2. An Interim Report, covering this work was completed and submitted in September 1995. The Literature Review section of the study was completed and presented to SENMPLCC in August, 1995. Following SENMPLCC review, NWHC was asked to develop a series of questions that could be posed from information gained in the initial phase (Appendix 3). The NWHC and NWRC were then directed to begin work to answer the top three questions, within the available fiscal resources. NWRC could continue with work outlined under the original Study Plan (Appendix 1), however an additional Study Plan for experiments performed by NWHC and collaborators and is available as Appendix 4.

New Mexico↗