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At least 37 records · Page 2Linked to original sources
USGS2009

Maintaining the competitiveness of the American Fisheries Society journals: An assessment based on influence and cost-effectiveness

Recent changes in the landscape of scientific publishing prompted the Publications Overview Committee of the American Fisheries Society (AFS) to review the Society's portfolio of scientific journals. We evaluated journals based on metrics in two categories: (1) citation-based measures of the influence of a journal on the scientific literature, and (2) measures of the cost-effectiveness of a journal (citation rate adjusted for subscription cost). Over the long-term, we found that ecology journals had far stronger citation-based influence than fisheries and aquatic sciences journals, and that journals publishing primarily basic research had stronger influence than journals publishing applied research (including four AFS journals and Fisheries magazine). In evaluating the current status of fisheries and aquatic sciences journals, we found that metrics of influence and cost-effectiveness provided considerably different portrayals of journals relative to their peers. In terms of citation-based influence, we found that the AFS journal Transactions of the American Fisheries Society (TAFS) and Fisheries magazine were competitive with highly regarded peer fisheries journals, but that North American Journal of Aquaculture (NAJA) and Journal of Aquatic Animal Health (JAAH) were less influential than their peers. The citation-based influence of North American Journal of Fisheries Management (NAJFM) was intermediate between TAFS/Fisheries and NAJA/JAAH . For journals like NAJFM and NAJA , we expect that much of the scientific influence on policy and management is not captured by citations in the primary literature, and alternative methods of evaluation may be needed. All of the AFS journals ranked highly with regard to cost-effectiveness because their subscription costs are low, and these rankings are in accordance with membership needs and the strategic mission of AFS to provide broad and timely dissemination of scientific information. We conclude by suggesting ways to increase the influence of AFS journals without compromising their accessibility and affordability, and offer advice about methods and frequency for future journal evaluations.

Fisheries↗
USGS2024

Cisco (Coregonus artedi) and bloater (Coregonus hoyi) culture manual

The primary objective of the Coregonine Research Program established at the U.S. Geological Survey, Great Lakes Science Center, Tunison Laboratory of Aquatic Science as mandated by the Great Lakes Restoration Initiative is to restore native coregonines, specifically Coregonus artedi (Lesueur, 1818; ciscoes) and Coregonus hoyi (Milner, 1874; bloaters) into Lake Ontario. This objective focuses on providing an alternative food source for top predators and improving the ecological function of Lake Ontario as it relates to native versus invasive species control. To complete this goal, hatchery techniques were developed to grow ciscoes and bloaters; these techniques are described in this standard operating manual.

Techniques and Methods↗
USGS2022

Eastern Ecological Science Center — Fish and aquatic animal health

Science provided by the U.S. Geological Survey (USGS) Eastern Ecological Science Center (EESC) helps to protect fish and aquatic animal health and support disease management of our Nation’s fisheries and aquatic animal populations. Our capabilities and expertise span diverse, yet highly integrated disciplines related to all aspects of biology, ecology, and animal health. Our scientists work to identify novel and emerging pathogens and diseases to assess fish and aquatic animal responses to parasites, pathogens, adverse environmental conditions, and chemical exposures. Eastern Ecological Science Center research is conducted both in laboratories and in the field in various aquatic environments ranging from headwater streams to the ocean. The EESC team provides science leadership and support for fisheries and aquatic species specialists nationwide.

Fact Sheet↗
USGS2026

Origins, evolutions, and future directions of Landsat science products for advancing global inland water and coastal ocean observations

In April 2020, the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center introduced a Level 2 provisional Aquatic Reflectance (AR) product for the Landsat 8 Operational Land Imager (OLI), marking the initial phase in developing a standardized global product for Landsat-derived surface water measurements. The goal of USGS EROS aquatic product research and development is to prepare for an operational processing architecture for Landsat Collection 3 in the late 2020s that will enable use of quality-controlled data for emerging Landsat aquatic science applications. To achieve this, we released a subset of the Landsat 8/9 provisional AR products (Crawford et al., 2025, https://doi.org/10.5066/P14MBBRM) and examined its general performance through the Science Algorithms to Operations (SATO) framework alongside quantitative assessment using community made inland water data records (GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments, GLORIA) and radiometric coastal validation platforms (NASA’s Ocean Color component of the Aerosol Robotic Network, AERONET-OC). Variability within the validation datasets indicate that the performance of the Landsat 8/9 provisional AR retrieval is highly context-dependent; errors are minimal in optically simple waters (e.g., clear to moderately turbid coastal waters) but increase considerably in optically complex waters where factors such as elevated levels of turbidity, chlorophyll (Chl a ) concentrations, or colored dissolved organic matter (CDOM) dominate the water column. Additionally, this paper examines key algorithmic considerations for atmospheric correction, highlighting factors that influence accuracy, scalability, and computational efficiency necessary for collection processing in the operational Landsat Product Generation System (LPGS). This paper is intended to communicate with aquatic scientists, satellite oceanographers, and the broader Earth observation community on the origins, requirements, challenges, successes, and future objectives for operationalizing global AR data products for Landsat satellite missions.

Earth System Science Data↗
USGS2021

USGS CEOS analysis ready data for land achievements and future plans

The efforts of the Committee on Earth Observation Satellites (CEOS) to bring CEOS Analysis Ready Data for Land (CARD4L) products to countries and international organizations quickly and easily continues to receive important support from the U.S. Geological Survey (USGS). As part of its engagement with CARD4L, the USGS worked to address specific Threshold and Target Product Family Specification (PFS) requirements for its Landsat Collection 2 Level-2 science products and in July 2020, received formal CEOS endorsement for 100 percent CARD4L-compliance at the Threshold level for Collection 2 surface reflectance and surface temperature. This endorsement ensures these products meet a level of interoperability with data from other Earth-observing platforms, such as Europe's Sentinel-2 satellites, as the European Space Agency also works toward CARD4L-compliant products. In addition to the Collection 2 Level-2 land surface data products, the USGS recognizes Landsat's potential to make a valuable contribution to aquatic science and environmental monitoring capabilities for aquatic ecosystems, especially in coastal and inland waters. Working with subject matter experts, the USGS has been coordinating an international agency effort to establish a new CARD4L PFS for aquatic reflectance to be considered for CEOS endorsement in 2021.

Conference Paper↗
USGS2025

One-hundred fundamental, open questions to integrate methodological approaches in lake ice research

The rate of technological innovation within aquatic sciences outpaces the collective ability of individual scientists within the field to make appropriate use of those technologies. The process of in situ lake sampling remains the primary choice to comprehensively understand an aquatic ecosystem at local scales; however, the impact of climate change on lakes necessitates the rapid advancement of understanding and the incorporation of lakes on both landscape and global scales. Three fields driving innovation within winter limnology that we address here are autonomous real-time in situ monitoring, remote sensing, and modeling. The recent progress in low-power in situ sensing and data telemetry allows continuous tracing of under-ice processes in selected lakes as well as the development of global lake observational networks. Remote sensing offers consistent monitoring of numerous systems, allowing limnologists to ask certain questions across large scales. Models are advancing and historically come in different types (process-based or statistical data-driven), with the recent technological advancements and integration of machine learning and hybrid process-based/statistical models. Lake ice modeling enhances our understanding of lake dynamics and allows for projections under future climate warming scenarios. To encourage the merging of technological innovation within limnological research of the less-studied winter period, we have accumulated both essential details on the history and uses of contemporary sampling, remote sensing, and modeling techniques. We crafted 100 questions in the field of winter limnology that aim to facilitate the cross-pollination of intensive and extensive modes of study to broaden knowledge of the winter period.

Water Resources Research↗
USGS2018

Connectivity of streams and wetlands to downstream waters: An integrated systems framework

Interest in connectivity has increased in the aquatic sciences, partly because of its relevance to the Clean Water Act. This paper has two objectives: (1) provide a framework to understand hydrological, chemical, and biological connectivity, focusing on how headwater streams and wetlands connect to and contribute to rivers; and (2) briefly review methods to quantify hydrological and chemical connectivity. Streams and wetlands affect river structure and function by altering material and biological fluxes to the river; this depends on two factors: (1) functions within streams and wetlands that affect material fluxes; and (2) connectivity (or isolation) from streams and wetlands to rivers that allows (or prevents) material transport between systems. Connectivity can be described in terms of frequency, magnitude, duration, timing, and rate of change. It results from physical characteristics of a system, e.g., climate, soils, geology, topography, and the spatial distribution of aquatic components. Biological connectivity is also affected by traits and behavior of the biota. Connectivity can be altered by human impacts, often in complex ways. Because of variability in these factors, connectivity is not constant but varies over time and space. Connectivity can be quantified with field‐based methods, modeling, and remote sensing. Further studies using these methods are needed to classify and quantify connectivity of aquatic ecosystems and to understand how impacts affect connectivity.

Journal of the American Water Resources Associatio↗
USGS2011

Differences in macroinvertebrate community structure in streams and rivers with different hydrologic regimes in the semi-arid Colorado Plateau

Aquatic macroinvertebrates are sensitive to changes in their chemical and physical environment, and as such, serve as excellent indicators of overall ecosystem health. Moreover, temporal and spatial differences in macroinvertebrate community structure can be used to investigate broad issues in aquatic science, such as the hypothesis that changes in climate are likely to have disproportionately large effects on small, intermittent stream ecosystems. We quantified macroinvertebrate community structure and abiotic conditions at ten stream sites with different dominant hydrologic regimes in the Colorado Plateau, ranging from small, intermittent desert streams to large perennial mountain rivers. Considerable differences were observed in community structure between sites with differing hydrologic regimes. Quantitative results of non-metric multidimensional scaling (NMDS) ordination and Spearman rank correlations between physical habitat and macroinvertebrate resemblance matrices indicate that discharge, geomorphic channel unit type (% pools vs. % riffles), percent of substrate composed of sand, and velocity were the subset of measured habitat variables that best explained the differences in macroinvertebrate community structure among sites. Of the 134 taxa identified, nine taxa explained 95 % of the variability in community structure between sites. These results add to a growing base of knowledge regarding the functioning of lotic ecosystems in the Colorado Plateau, and provide timely information on anticipated changes in the structure and function of aquatic ecosystems in response to predicted future environmental conditions.

Colorado Plateau↗
USGS1999

Outbreeding depression in hybrids between odd-and even-broodyear pink salmon

Fewer F 2 hybrids between even- and odd-broodline pink salmon ( Oncorhynchus gorbuscha ), which are lines that are genetically isolated by their strict two-year life cycle, survived than did F 2 controls, indicating outbreeding depression. Cryopreserved sperm of 40 broodyear 1990 males and of 40 broodyear 1991 males fertilized equal subsamples of eggs from 40 broodyear 1992 females. Return rates of F 1 hybrids (1.73%) and controls (1.63%) in 1994 did not differ significantly ( P =0.30). F 2 hybrid and control crosses were made from 40 males and 40 females selected at random from each return group. Offspring were differentially marked and released. In 1996, returns differed significantly ( P =0.011) between hybrids ( n =34, 0.34%) and controls ( n =44, 0.42%). The low rate of return of the control fish was similar to the measured return of a much larger group of tagged Auke Creek pink salmon, and probably not an artifact of the experiment. Although no increase in fluctuating asymmetry of paired meristic counts was observed in either F 1 or F 2 hybrids, size and some meristic counts of hybrids exceed measurements of controls, suggesting heterosis for those traits. The observations of decreased survival in F 2 hybrids confirm previous work [Gharrett, A.J., Smoker, W.W., 1991. Two generations of hybrids between even- and odd-year pink salmon ( O. gorbuscha ). Canadian Journal of Fisheries and Aquatic Science 48(9) 1744–1749]. Although genetic divergence between pink salmon broodlines is large and outbreeding depression might be expected in such unlikely hybrids, the results document the occurrence of outbreeding depression in salmon and signal caution in making management and aquacultural decisions that may create the possibility of outbreeding depression in self-sustaining or cultured populations.

Aquaculture↗
USGS2021

The drying regimes of non-perennial rivers and streams

The flow regime paradigm is central to the aquatic sciences, where flow drives critical functions in lotic systems. Non-perennial streams comprise the majority of global river length, thus we extended this paradigm to stream drying. Using 894 USGS gages, we isolated 25,207 drying events from 1979 to 2018, represented by a streamflow peak followed by no flow. We calculated hydrologic signatures for each drying event and using multivariate statistics, grouped events into drying regimes characterized by: (a) fast drying, (b) long no-flow duration, (c) prolonged drying following low antecedent flows, (d) drying without a distinctive hydrologic signature. 77% of gages had more than one drying regime at different times within the study period. Random forests revealed land cover/use are more important to how a river dries than climate or physiographic characteristics. Clustering stream drying behavior may allow practitioners to more systematically adapt water resource management practices to specific drying regimes or rivers.

Geophysical Research Letters↗
USGS2024

Atlantic salmon (Salmo salar) culture manual

The primary objective of the Atlantic Salmon Research Program established at the U.S. Geological Survey Tunison Laboratory of Aquatic Science as mandated by the Great Lakes Restoration Initiative is to restore Atlantic salmon (Linnaeus, 1758; Salmo salar ) into Lake Ontario. This objective focuses on evaluating the survival of stocked Atlantic salmon in current Lake Ontario conditions to create a genetic strain that is robust to overcome current physiological and physical barriers. To complete this goal, new and innovative hatchery techniques based on past successful methods and protocols to grow Atlantic salmon to various life stages are described in this standard operating manual.

Techniques and Methods↗
USGS2010

Southeast Ecological Science Center

Aquatic ecosystems, from deep sea reefs and coastal marshes to freshwater springs and wetlands, are home to diverse assemblages of life. These commercially and ecologically important systems are part of our national heritage, and are often treasured places or refuges that protect rare or threatened species. In the water-rich Southeastern United States, managers face the challenge of understanding how water and land use affect the region's aquatic life. The Southeast Ecological Science Center (SESC) helps address that challenge by providing objective science that can be used to evaluate proposed actions and develop management strategies.

Fact Sheet↗
USGS2016

Science to support aquatic animal health

Healthy aquatic ecosystems are home to a diversity of plants, invertebrates, fish and wildlife. Aquatic animal populations face unprecedented threats to their health and survival from climate change, water shortages, habitat alteration, invasive species and environmental contaminants. These environmental stressors can directly impact the prevalence and severity of disease in aquatic populations. For example, periodic fish kills in the upper Chesapeake Bay Watershed are associated with many different opportunistic pathogens that proliferate in stressed fish populations. An estimated 80 percent of endangered juvenile Puget Sound steelhead trout die within two weeks of entering the marine environment, and a role for disease in these losses is being investigated. The introduction of viral hemorrhagic septicemia virus (VHSV) into the Great Lakes—a fishery worth an estimated 7 billion dollars annually—resulted in widespread fish die-offs and virus detections in 28 different fish species. Millions of dying sea stars along the west coast of North America have led to investigations into sea star wasting disease. U.S. Geological Survey (USGS) scientists are assisting managers with these issues through ecological investigations of aquatic animal diseases, field surveillance, and research to promote the development of mitigation strategies.

Fact Sheet↗
USGS2017

The Wetland and Aquatic Research Center strategic science plan

Introduction The U.S. Geological Survey (USGS) Wetland and Aquatic Research Center (WARC) has two primary locations (Gainesville, Florida, and Lafayette, Louisiana) and field stations throughout the southeastern United States and Caribbean. WARC’s roots are in U.S. Fish and Wildlife Service (USFWS) and National Park Service research units that were brought into the USGS as the Biological Research Division in 1996. Founded in 2015, WARC was created from the merger of two long-standing USGS biology science Centers—the Southeast Ecological Science Center and the National Wetlands Research Center—to bring together expertise in biology, ecology, landscape science, geospatial applications, and decision support in order to address issues nationally and internationally. WARC scientists apply their expertise to a variety of wetland and aquatic research and monitoring issues that require coordinated, integrated efforts to better understand natural environments. By increasing basic understanding of the biology of important species and broader ecological and physiological processes, this research provides information to policymakers and aids managers in their stewardship of natural resources and in regulatory functions. This strategic science plan (SSP) was developed to guide WARC research during the next 5–10 years in support of Department of the Interior (DOI) partnering bureaus such as the USFWS, the National Park Service, and the Bureau of Ocean Energy Management, as well as other Federal, State, and local natural resource management agencies. The SSP demonstrates the alignment of the WARC goals with the USGS mission areas, associated programs, and other DOI initiatives. The SSP is necessary for workforce planning and, as such, will be used as a guide for future needs for personnel. The SSP also will be instrumental in developing internal funding priorities and in promoting WARC’s capabilities to both external cooperators and other groups within the USGS.

Open-File Report↗
USGS2026

Patterns of recent brook trout invasion in bull trout streams in relation to habitat, source connectivity, biotic resistance, and disturbance

Knowledge of which habitats are at risk of invasion by nonnative species is essential to conservation, but a changing climate often complicates assessments of where future invasions may occur. Nonnative brook trout Salvelinus fontinalis threaten cold-adapted native salmonids throughout western North America, and the extent of future invasions in coldwater streams is recognized as an area of uncertainty with important consequences. We addressed this uncertainty using spatial-stream-network (SSN) modeling to develop a species distribution model (SDM) for brook trout in Idaho, creating high-resolution prediction maps of suitable (i.e., invadable) habitat under baseline (1990–2015) and future (2080s) climate scenarios, and querying predictions within natal bull trout S. confluentus habitat patches (stream–subwatershed scale) for each scenario. Results indicated that brook trout will experience a net loss of suitable habitat in Idaho, but a large increase of suitable habitat in cold streams. The total proportion of bull trout habitat invadable by brook trout increased from 0.33 during the baseline scenario to 0.44 during the future scenario—a result of upstream expansions of brook trout habitat that were partially offset by contractions in bull trout habitat. Changes in the proportion of invadable habitat varied widely among bull trout patches. Between scenarios, the largest increases in suitable habitat occurred in small, low-gradient, unconfined streams with mean August water temperatures of 7–9 °C during the baseline period. A relatively small proportion of patches contained the majority of invadable habitat in both scenarios, particularly patches in “U-shaped” glacial valleys. A changing climate will broadly increase the threat that brook trout pose to bull trout, but the degree of change experienced by individual populations will vary with local context. The high-resolution prediction maps created by our SSN model will help conservation planners identify and prioritize control efforts on the small proportion of brook trout populations that most threaten bull trout.

Idaho↗
USGS1987

Recent changes in Lake Michigan's fish community and their probable causes, with emphasis on the role of the alewife (Alosa pseudoharengus)

Deepwater ciscoes ( Coregonus spp.) or "chubs" of Lake Michigan far surpassed those of Lake Huron in yield, population density, and resilience following severe depletion in the 1960s and 1970s, when the bloater ( C . hoyi ) composed more than 90% of the stocks. The population decline of bloaters in recent decades was mainly attributed to exploitation, to the depression of chub recruitment (e.g. from inferred predation on early life stages) by nonendemic alewives ( Alosa pseudoharengus ) and rainbow smelt ( Osmerus mordax ), and to complications arising from extreme female predominance that was best documented for Lake Michigan. The various interactions between bloaters and the nonendemic species, which were intensified after the loss of large predators to sea lamprey ( Petromyzon marinus ), would help to explain why a stock–recruitment relation was not shown for the Lake Michigan bloater. We hypothesize that reproductive inefficiency caused by a shift to strong female predominance in the bloater depresses recruitment and thus helps to regulate abundance. However, the low resilience that sex imbalance seems to impart makes the stock unstable when exploited. It should therefore be exploited conservatively during such periods. Also, the sex ratio and its direction of change appear to be important qualifiers when surplus production is estimated from stock size.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2019

Long-term annual aerial surveys of submersed aquatic vegetation (SAV) support science, management, and restoration

Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually, they reveal changes that are otherwise difficult to assess from ground-based surveys. This paper reviews the utility of a long-term (1984-present) annual aerial monitoring program for submersed aquatic vegetation (SAV) in Chesapeake Bay, its tidal tributaries, and nearby Atlantic coastal bays, USA. We present a series of applications that highlight the program’s importance in assessing anthropogenic impacts, gauging water quality status and trends, establishing and evaluating restoration goals, and understanding the impact of commercial fishing practices on benthic habitats. These examples demonstrate how periodically quantifying coverage of this important foundational habitat answers basic research questions locally as well as globally, and provides essential information to resource managers. New technologies are enabling more frequent and accurate aerial surveys at greater spatial resolution and lower cost. These advances will support efforts to extend the applications described here to similar issues in other areas

Chesapeake Bay↗