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At least 343 records · Page 19Linked to original sources

USGS2025

Per- and polyfluoroalkyl substances in surface water and sediment in Great Lakes tributaries and relations with watershed attributes

Per- and polyfluoroalkyl substances (PFAS) are chemicals of emerging concern that potentially pose risks to human and environmental health. In May–Oct 2018, sediment and passively collected surface water samples were collected from 62 tributary sites of the Laurentian Great Lakes with site catchments spanning various land cover types. Discrete samples of sediment collected manually and time-integrated surface water samples collected with polar organic chemical integrative samplers (POCIS) were analyzed for 23 and 34 PFAS, respectively. Concentrations of individual PFAS in sediment and surface water varied immensely among sites from below detection to 20,800 ng kg −1 and 247 ng L −1 , respectively. Of all target compounds, PFOS was the most frequently detected in sediment (56 of 62 sites) and had the highest median concentration (132 ng kg −1 ). PFOA, PFHxS, PFOS, PFHpA, and PFNA (full chemical names are listed in online supplementary material Table S2) were detected in all 60 surface water sites, with median estimated concentrations of 5.9, 5.2, 4.6, 3.7, and 1.3 ng L −1 , respectively. Compounds with 8–13 fluorinated carbons comprised a larger proportion of sediment PFAS than compounds with 4–7 fluorinated carbons, whereas compounds with 4–7 fluorinated carbons comprised a greater proportion of PFAS in surface waters. Watershed attributes, including urban land cover, airports per catchment area, and wastewater treatment plants flow percentage were significantly ( p < 0.05) and positively related with PFAS sum concentrations in sediment and (or) surface water. Collectively, these results, albeit with some uncertainty in the estimated concentrations, highlight the relation PFAS occurrence has with human activities and documents widespread low-level PFAS contamination across the Great Lakes basin.

Great Lakes↗

USGS2025

Sea Lamprey control reduction during the COVID-19 pandemic corresponds to rapid increase in Sea Lamprey abundance

The Sea Lamprey Petromyzon marinus control program in the Laurentian Great Lakes is one of the longest-running and most successful invasive species suppression programs in the world. Although several techniques are used to suppress Sea Lamprey, the control program relies heavily on regular application of lampricide to kill stream-dwelling larvae. The COVID-19 pandemic disrupted lampricide application from 2020 to 2022, which provided a unique opportunity to test how Sea Lamprey populations and wound counts on fishes would respond. We evaluated the consequences of decreased control effort at a basin-wide level using standard control program metrics and through a focused analysis of multispecies wounding in Lake Ontario, which experienced the greatest disruption in Sea Lamprey control. The reduction in control effort corresponded to increased basin-wide adult Sea Lamprey abundance but was only weakly associated with Lake Trout Salvelinus namaycush wounding. However, the novel multispecies wounding rate metric calculated for Lake Ontario increased and was consistent with observations by anglers and managers regarding a sharp increase in Sea Lamprey abundance following reduced effort. Ultimately, our research highlights that consistent treatment is critically important for preventing damage stemming from Sea Lamprey and that reductions in suppression could quickly lead to a resurgence in abundance.

Great Lakes↗

USGS1996

Zebra mussel infestation of unionid bivalves (Unionidae) in North America

In 1989, zebra mussels received national attention in North America when they reached densities exceeding 750,000/m2 in a water withdrawal facility along the shore of western Lake Erie of the Laurentian Great Lakes. Although water withdrawal problems caused by zebra mussels have been of immediate concern, ecological impacts attributed to mussels are likely to be the more important long-term issue for surface waters in North America. To date, the epizoic colonization (i.e., infestation) of unionid bivalve mollusks by zebra mussels has caused the most direct and severe ecological impact. Infestation of and resulting impacts caused by zebra mussels on unionids in the Great Lakes began in 1988. By 1990, mortality of unionids was occurring at some locations; by 1991, extant populations of unionids in western Lake Erie were nearly extirpated; by 1992, unionid populations in the southern half of Lake St. Clair were extirpated; by 1993, unionids in widely separated geographic areas of the Great Lakes and the Mississippi River showed high mortality due to mussel infestation. All infested unionid species in the Great Lakes (23) have become infested and exhibited mortality within two to four years after heavy infestation began. Data indicate that mean zebra mussel densities >5,000–6,000/m 2 and infestation intensities >100-200/unionid in the presence of heavy zebra mussel recruitment results in near total mortality of unionids. At present, all unionid species in rivers, streams, and akes that sympatrically occur with zebra mussels have been infested and, in many locations, negatively impacted by zebra mussels. We do not know the potential consequences of infestation on the 297 unionid species found in North America, but believe zebra mussels pose an immediate threat to the abundance and diversity of unionids.

American Zoologist↗

USGS2020

Advancements towards selective barrier passage by automatic species identification: Applications of deep convolutional neural networks on images of dewatered fish

Invasive species negatively affect enterprises such as fisheries, agriculture, and international trade. In the Laurentian Great Lakes Basin, threats include invasive sea lamprey ( Petromyzon marinus ) and the four major Chinese carps. Barriers have proven to be an effective mechanism for managing invasive species but are detrimental in that they also limit the migration of desirable, native species. Fish passage technologies that selectively pass desirable species while blocking undesirable species are needed. Key to an automated selective barrier passage system is a high precision fish classifier to assign fish to be passed or blocked. Presented is an evaluation of two classifiers developed using images of partially dewatered fish captured from a commercial, high-speed camera array. For a lamprey vs. non-lamprey classification task, an ensemble prediction approach achieved near perfect accuracy on both a validation and test dataset. For a species classification task for 13 species found in the Great Lakes region, an ensemble prediction approach achieved accuracies of 96% and 97% on a validation and test dataset, respectively. Both prediction approaches were based on deep convolutional neural networks constructed using transfer learning and image augmentation. The study provides an important proof-of-concept for the viability in fully automated, selective fish passage systems.

Illinois, Michigan,Ohio↗

USGS2018

Hatchery strain contributions to emerging wild lake trout populations in Lake Huron

Recent assessments indicate the emergence of naturally produced lake trout ( Salvelinus namaycush ) recruitment throughout Lake Huron in the North American Laurentian Great Lakes (>50% of fish <7 years). Because naturally produced fish derived from different stocked hatchery strains are unmarked, managers cannot distinguish strains contributing to natural recruitment. We used 15 microsatellite loci to identify strains of naturally produced lake trout ( N = 1567) collected in assessment fisheries during early (2002–2004) and late (2009–2012) sampling periods. Individuals from 13 American and Canadian hatchery strains ( N = 1143) were genotyped to develop standardized baseline information. Strain contributions were estimated using a Bayesian inferential approach. Deviance information criteria were used to compare models evaluating strain contributions at different spatial and temporal scales. The best performing models were the most complex models, suggesting that hatchery strain contributions to naturally produced lake trout varied spatially among management districts and temporally between time periods. Contributions of Seneca strain lake trout were consistently high across most management districts, with contributions increasing from early to late time periods (estimates ranged from 52% to 94% for the late period across 8 of 9 districts). Strain contributions deviated from expectations based on historical stocking levels, indicating strains differed with respect to survival, reproductive success, and/or dispersal. Knowledge of recruitment levels of strains stocked in different management districts, and how strain-specific recruitment varies temporally, spatially, and as a function of local or regional stocking is important to prioritize strains for future stocking and management of the transition process from primarily hatchery to naturally produced stocks.

Journal of Heredity↗

USGS2021

Invasive sea lamprey detection and characterization using interdigitated electrode (IDE) contact sensor

The ability to monitor invasive sea lamprey (Petromyzon marinus) populations in the Laurentian Great Lakes is critical to protecting the region’s $ 7 billion USD fishing industry and preserving its biodiversity. Monitoring these invaders requires considerable fieldwork and human power, making remote lamprey detection systems attractive for their continuous monitoring capabilities and potential for workload reduction. However, a lack of available methods for detecting sea lamprey hampers development of such systems. Here we present a sensor composed of two exposed planar interdigitated electrodes (IDE) along with a DC measurement system for the detection of lamprey attachment underwater. Measuring voltage instead of impedance, reduces cost and signal processing complexity, making the device more attractive for field deployment. The system is calibrated to a baseline output voltage and deviations from this baseline occur when objects touch the IDE. Validation was done through testing on live adult sea lampreys using video recordings to correlate lamprey attachments to the sensor response. Three response types were identified corresponding to different attachments: sustained, short and sliding-sustained. Sensor response to sustained and sliding-sustained attachments showed a characteristic exponential decay whereas the response due to short attachments was indistinguishable from measurement noise. Lamprey size was found to have a weak linear correlation with both response parameters, positive for the voltage drop and negative for the time constant of voltage drop. A representative circuit for the lamprey-sensor interaction is proposed and simulated using element values calculated from the response parameters. The response of the model shows agreement with experimental data.

Great Lakes↗

USGS2017

Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor

Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or temporally-distributed food and space resources. This study investigated the spatial ecology of lake sturgeon ( Acipenser fulvescens ) within the barrier free Huron-Erie Corridor (HEC), which connects Lake Huron and Lake Erie of the North American Laurentian Great Lakes. Over six years (2011 – 2016), movements of 268 lake sturgeon in the HEC were continuously monitored across the Great Lakes using acoustic telemetry (10 yr battery life acoustic transmitters). Five distinct migration behaviours were identified with hierarchical cluster analysis, based on the phenology and duration of river and lake use. Lake sturgeon in the HEC were found to contain a high level of intraspecific divergent migration, including partial migration with the existence of residents. Specific behaviours included year-round river residency and multiple lake-migrant behaviours that involved movements between lakes and rivers. Over 85% of individuals were assign to migration behaviours as movements were consistently repeated over the study, which suggested migration behaviours were consistent and persistent in lake sturgeon. Differential use of specific rivers or lakes by acoustic-tagged lake sturgeon further subdivided individuals into 14 “contingents” (spatiotemporally segregated subgroups). Contingents associated with one river (Detroit or St. Clair) were rarely detected in the other river, which confirmed that lake sturgeon in the Detroit and St. Clair represent two semi-independent populations that could require separate management consideration for their conservation. The distribution of migration behaviours did not vary between populations, sexes, body size, or among release locations, which indicated that intrapopulation variability in migratory behaviour is a general feature of the spatial ecology of lake sturgeon in un-fragmented landscapes.

Michigan, Ontario↗

USGS2016

Divergent life histories of invasive round gobies (Neogobius melanostomus) in Lake Michigan and its tributaries

Round gobies ( Neogobius melanostomus ) have invaded benthic habitats of the Laurentian Great Lakes and connected tributary streams. Although connected, these two systems generally differ in temperature (Great Lakes are typically colder), food availability ( Dreissenid mussels are more prevalent in Great Lakes), and system size and openness. Here, we compare round goby life histories from inshore Lake Michigan and adjacent tributary systems—an uncommon case study of life-history differences between connected systems. Tributary round gobies grew much faster (average length-at-age of 122.3 vs. 65.7 mm for Age 2 + round gobies), appeared to have shorter life spans (maximum observed age of 2 vs. 5) and had lower age-at-50% maturity (1.6 vs. 2.4 years; females only) compared to gobies from Lake Michigan. In addition, tributary gobies had greater fecundity at Ages 1–2 than lake gobies, but had fewer eggs for a given body size prior to the first spawning event of the summer. We were not able to determine the cause of the observed life-history differences. Nonetheless, the observed differences in growth, maturation and longevity were consistent with known effects of water temperature, as well as predictions of life-history theory for animals at invasion fronts exposed to novel environmental conditions. The high degree of phenotypic plasticity in connected populations of this invasive species has implications for our understanding of invasive species impacts in different habitats.

Wisconsin↗

USGS2017

Spawning site fidelity and apparent annual survival of walleye (Sander vitreus) differ between a Lake Huron and Lake Erie tributary

Fidelity to spawning habitats can maximise reproductive success of fish by synchronising movements to sites of previous recruitment. To determine the role of reproductive fidelity in structuring walleye Sander vitreus populations in the Laurentian Great Lakes, we used acoustic telemetry combined with Cormack–Jolly–Seber capture–recapture models to estimate spawning site fidelity and apparent annual survival for the Tittabawassee River in Lake Huron and Maumee River in Lake Erie. Walleye in spawning condition were tagged from the Tittabawassee River in Lake Huron and Maumee River in Lake Erie in 2011–2012. Site fidelity and apparent annual survival were estimated from return of individuals to the stream where tagged. Site fidelity estimates were higher in the Tittabawassee River (95%) than the Maumee River (70%) and were not related to sex or fish length at tagging. Apparent annual survival of walleye tagged in the Tittabawassee did not differ among spawning seasons but was higher for female than male walleye and decreased linearly as fish length increased. Apparent annual survival of walleye tagged in the Maumee River did not differ among spawning seasons but was higher for female walleye than male walleye and increased linearly as fish length increased. Greater fidelity of walleye tagged in the Tittabawassee River than walleye tagged in the Maumee River may be related to the close proximity to the Maumee River of other spawning aggregations and multiple spawning sites in Lake Erie. As spawning site fidelity increases, management actions to conserve population structure require an increasing focus on individual stocks.

Lake Erie, Lake Huron↗

USGS2017

Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America

Previous studies of lake trout, Salvelinus namaycush , spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry to locate, describe and compare lake trout spawning habitats. Adult lake trout were implanted with acoustic transmitters and tracked during five consecutive spawning seasons in a 19–27 km 2 region of the Drummond Island Refuge, Lake Huron, using the VEMCO Positioning System. Acoustic telemetry revealed discrete areas of aggregation on at least five reefs in the study area, subsequently confirmed by divers to contain deposited eggs. Notably, several identified spawning sites would likely not have been discovered using traditional methods because either they were too small and obscure to stand out on a bathymetric map or because they did not conform to the conceptual model of spawning habitat held by many biologists. Our most unique observation was egg deposition in gravel and rubble substrates located at the base of and beneath overhanging edges of large boulders. Spawning sites typically comprised <10% of the reef area and were used consistently over the 5-year study. Evaluation of habitat selection from the perspective of fish behaviour through use of acoustic transmitters offers potential to expand current conceptual models of critical spawning habitat.

Ecology of Freshwater Fish↗

USGS2019

Diets of endangered silver chub (Macrhybopsis storeriana, Kirtland, 1844) in Lake Erie and implications for recovery

Silver chub ( Macrhybopsis storeriana , Kirtland, 1844) is a native Cyprinid in Lake Erie, one of the Laurentian Great Lakes of North America. It is listed as endangered by the US state of New York and Canada, which has a recovery plan, and as special concern by the state of Michigan. Silver chub faces a potential threat to recovery from control efforts for invasive Grass carp ( Ctenopharyngodon idella , Valenciennes 1844). Among the knowledge gaps for protection and restoration is current diet data. I describe the diet of silver chub from western Lake Erie in 2014, and I compare it to past studies to assess changes in diet through time. Silver chub captured in bottom trawls May–September 2014 were frozen in the field, and stomach contents were preserved in ethanol. Diet taxa were identified to the lowest practical taxonomic unit, then dried and weighed. Frequency of occurrence in silver chub diets was highest for Hexagenia spp. mayflies (79%). Dreissena spp. and Hexagenia spp. were both 41% of the diet by dry weight. Analysis of δ 13 C isotopes identified Hexagenia spp. as the primary source of carbon in silver chub. Compared to past studies, Dreissena spp. have mostly replaced Sphaeriidae and Gastropoda in silver chub diets. There also have been seasonal shifts in relative amounts of shelled organisms and Hexagenia spp. This study and past research suggest a functional link between silver chub and Hexagenia spp. abundance. Maintenance and recovery of silver chub may be dependent on maintaining Hexagenia spp. populations.

Ecology of Freshwater Fish↗

USGS2021

Diversity in spawning habitat use among Great Lakes Cisco populations

Cisco ( Coregonus artedi ) once dominated fish communities in the Laurentian Great Lakes. Restoring the abundance and distribution of this species has emerged as a management priority, yet our understanding of Cisco spawning habitat use is insufficient to characterise habitat needs for these populations and assess whether availability of suitable spawning habitat could be a constraint to recovery. We characterised the distribution of incubating Cisco eggs in situ across gradients of depth and substrate types to describe the spawning habitat used by three Great Lakes populations. In Chaumont Bay, Lake Ontario, eggs were concentrated on shallow bedrock shoals and not found on deeper silt or sand substrate. In contrast, eggs in Thunder Bay, Lake Superior, and Elk Rapids, Lake Michigan, were found on deeper fine grain sediments with low utilisation of shallow rocky and cobble habitats. These patterns of egg incubation habitat use suggest a broad spawning habitat niche at the species level but distinct spawning habitat preferences at the population level. While our results indicate some historical diversity in spawning habitat use has been maintained across the species’ range in the Great Lakes, comparisons of contemporary spawning habitat utilisation against historical accounts raise questions as to whether some spawning habitat use behaviours may no longer be prevalent within specific lakes. Thus, characterising the portfolio of spawning strategies remaining within lakes may improve our understanding of habitat needs and identify opportunities to maintain population diversity while supporting Cisco rehabilitation.

Michigan, New York↗

USGS2023

Larval cisco and lake whitefish exhibit high distributional overlap within nursery areas

Coregonine fishes, including lake whitefish ( Coregonus clupeaformis ) and cisco ( C. artedi ), are socioecologically important in the Laurentian Great Lakes and of conservation concern, but the processes driving recruitment variability are unclear. In Lake Ontario, cisco and lake whitefish exhibit similar spawning behaviours and early life histories, but population trajectories are diverging. One hypothesis is that sympatric cisco and lake whitefish larvae occupy distinct habitats and experience dissimilar local environmental conditions, despite co-occurrence within nursery areas. We described the spatiotemporal distributions of larval cisco and lake whitefish among multiple Lake Ontario embayment nursery areas, characterised physical habitat features associated with their distributions, determined the degree of spatial habitat partitioning between species and evaluated how habitat niche divergence occurred along an ontogenetic progression. Both species were widely distributed across larval nursery areas, though lake whitefish were less abundant and more narrowly distributed than cisco. Within the yolk sac stage, lake whitefish occupied more nearshore, shallower and colder waters than cisco, indicating potential habitat niche partitioning between congeners. However, distributional differences were subtle and likely driven by differential hatch timing and staggered ontogenetic habitat shifts. Combined, our results illustrate similar habitat use between cisco and lake whitefish through the larval stage and demonstrate that ontogeny and species-specific phenology influence habitat use for these species. This study provides additional evidence that the early life histories of cisco and lake whitefish are highly similar and does not support the hypothesis that larval habitat use differences are a major driver of differential recruitment success for these species.

New York↗

USGS2020

A century of intermittent eco‐evolutionary feedbacks resulted in novel trait combinations in invasive Great Lakes alewives (Alosa pseudoharengus)

Species introductions provide opportunities to quantify rates and patterns of evolutionary change in response to novel environments. Alewives ( Alosa pseudoharengus ) are native to the East Coast of North America where they ascend coastal rivers to spawn in lakes and then return to the ocean. Some populations have become landlocked within the last 350 years and diverged phenotypically from their ancestral marine population. More recently, alewives were introduced to the Laurentian Great Lakes (~150 years ago), but these populations have not been compared to East Coast anadromous and landlocked populations. We quantified 95 years of evolution in foraging traits and overall body shape of Great Lakes alewives and compared patterns of phenotypic evolution of Great Lakes alewives to East Coast anadromous and landlocked populations. Our results suggest that gill raker spacing in Great Lakes alewives has evolved in a dynamic pattern that is consistent with responses to strong but intermittent eco‐evolutionary feedbacks with zooplankton size. Following their initial colonization of Lakes Ontario and Michigan, dense alewife populations likely depleted large‐bodied zooplankton, which drove a decrease in alewife gill raker spacing. However, the introduction of large, non‐native zooplankton to the Great Lakes in later decades resulted in an increase in gill raker spacing, and present‐day Great Lakes alewives have gill raker spacing patterns that are similar to the ancestral East Coast anadromous population. Conversely, contemporary Great Lakes alewife populations possess a gape width consistent with East Coast landlocked populations. Body shape showed remarkable parallel evolution with East Coast landlocked populations, likely due to a shared response to the loss of long‐distance movement or migrations. Our results suggest the colonization of a new environment and cessation of migration can result in rapid parallel evolution in some traits, but contingency also plays a role, and a dynamic ecosystem can also yield novel trait combinations.

Great Lakes↗

USGS2016

Islands in the ice stream: were spawning habitats for native salmonids in the Great Lakes created by paleo-ice streams?

Lake trout Salvelinus namaycush , lake whitefish Coregonus clupeaformis and cisco Coregonus artedi are salmonid fishes native to the Laurentian Great Lakes that spawn on rocky substrates in the fall and early winter. After comparing the locations of spawning habitat for these species in the main basin of Lake Huron with surficial substrates and the hypothesized locations of fast-flowing Late Wisconsinan paleo-ice streams, we hypothesize that much of the spawning habitat for these species in Lake Huron is the result of deposition and erosion by paleo-ice streams. This hypothesis may represent a new framework for the identification and protection of spawning habitat for these native species, some of which are currently rare or extirpated in some of the Great Lakes. We further suggest that paleo-ice streams may have been responsible for the creation of native salmonid spawning habitat elsewhere in the Great Lakes and in other glaciated landscapes.

Lake Huron↗

USGS2023

Morphological differences between wild and hatchery-reared Bloater (Coregonus hoyi) from Lake Michigan, USA

Coregonines (ciscoes and whitefishes) are economically, ecologically, and culturally important fishes that are distributed throughout the Northern Hemisphere. In the Laurentian Great Lakes, coregonines declined throughout the 19th and 20th centuries, and managers have prioritized their restoration. A key restoration tool is reintroduction via stocking. However, hatchery-reared coregonines can display different morphologies than wild fish, which could affect their fitness. Unfortunately, our understanding of these differences is limited because previous work did not adequately remove allometric effects in morphological analyses. We compared morphologies between wild and hatchery-reared Bloater ( Coregonus hoyi ) from the same stock using appropriate size corrections. Hatchery-reared fish had shorter heads, shorter dorsal fins, and shallower bodies than wild fish. Moreover, some characters differed across wild fish collections. Our results improve our understanding of how artificial rearing can impact coregonine morphology, and we recommend future studies on what causes these differences and whether they impact fitness.

Fisheries Management and Ecology↗

USGS2014

Habitat coupling in a large lake system: delivery of an energy subsidy by an offshore planktivore to the nearshore zone of Lake Superior

1. We hypothesised that the autumn spawning migration of Lake Superior cisco ( Coregonus artedi ) provides a resource subsidy, in the form of energy-rich cisco eggs, from the offshore pelagic to the nearshore benthic community over winter, when alternate prey production is likely to be low. 2. We tested this hypothesis using fish and macroinvertebrate surveys, fish population demographics, diet and stable isotope analyses, and bioenergetics modelling. 3. The benthic, congeneric lake whitefish ( C. clupeaformis ) was a clear beneficiary of cisco spawning. Cisco eggs represented 16% of lake whitefish annual consumption in terms of biomass, but 34% of energy (because of their high energy density: >10 kJ g wet mass −1 ). Stable isotope analyses were consistent with these results and suggest that other nearshore fish species may also rely on cisco eggs. 4. The lipid content of lake whitefish liver almost doubled from 26 to 49% between November and March, while that of muscle increased from 14 to 26% over the same period, suggesting lake whitefish were building, rather than depleting, lipid reserves during winter. 5. In the other Laurentian Great Lakes, where cisco populations remain very low and rehabilitation efforts are underway, the offshore-to-nearshore ecological link apparent in Lake Superior has been replaced by non-native planktivorous species. These non-native species spawn in spring have smaller eggs and shorter incubation periods. The rehabilitation of cisco in these systems should reinstate the onshore subsidy as it has in Lake Superior.

Wisconsin↗

USGS2014

Depth gradients in food-web processes linking habitats in large lakes: Lake Superior as an exemplar ecosystem

In large lakes around the world, depth-based changes in the abundance and distribution of invertebrate and fish species suggest that there may be concomitant changes in patterns of resource allocation. Using Lake Superior of the Laurentian Great Lakes as an example, we explored this idea through stable isotope analyses of 13 major fish taxa. Patterns in carbon and nitrogen isotope ratios revealed use of both littoral and profundal benthos among populations of most taxa analysed regardless of the depth of their habitat, providing evidence of nearshore–offshore trophic linkages in the largest freshwater lake by area in the world. Isotope-mixing model results indicated that the overall importance of benthic food-web pathways to fish was highest in nearshore species, whereas the importance of planktonic pathways increased in offshore species. These characteristics, shared with the Great Lakes of Africa, Russia and Japan, appear to be governed by two key processes: high benthic production in nearshore waters and the prevalence of diel vertical migration (DVM) among offshore invertebrate and fish taxa. DVM facilitates use of pelagic food resources by deep-water biota and represents an important process of trophic linkage among habitats in large lakes. Support of whole-lake food webs through trophic linkages among pelagic, profundal and littoral habitats appears to be integral to the functioning of large lakes. These linkages can be disrupted though ecosystem disturbance such as eutrophication or the effects of invasive species and should be considered in native species restoration efforts.

Lake Superior↗