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At least 343 records · Page 19Linked to original sources
USGS2003

Modeling the Radiance of the Moon for On-orbit Calibration

The RObotic Lunar Observatory (ROLO) project has developed radiometric models of the Moon for disk-integrated irradiance and spatially resolved radiance. Although the brightness of the Moon varies spatially and with complex dependencies upon illumination and viewing geometry, the surface photometric properties are extremely stable, and therefore potentially knowable to high accuracy. The ROLO project has acquired 5+ years of spatially resolved lunar images in 23 VNIR and 9 SWIR filter bands at phase angles up to 90??. These images are calibrated to exoatmospheric radiance using nightly stellar observations in a band-coupled extinction algorithm and a radiometric scale based upon observations of the star Vega. An effort is currently underway to establish an absolute scale with direct traceability to NIST radiometric standards. The ROLO radiance model performs linear fitting of the spatially resolved lunar image data on an individual pixel basis. The results are radiance images directly comparable to spacecraft observations of the Moon. Model-generated radiance images have been produced for the ASTER lunar view conducted on 14 April 2003. The radiance model is still experimental - simplified photometric functions have been used, and initial results show evidence of computational instabilities, particularly at the lunar poles. The ROLO lunar image dataset is unique and extensive and presents opportunities for development of novel approaches to lunar photometric modeling.

Conference Paper↗
USGS2001

3-D imaging of large scale buried structure by 1-D inversion of very early time electromagnetic (VETEM) data

A simple and efficient method for large scale three-dimensional (3-D) subsurface imaging of inhomogeneous background is presented. One-dimensional (1-D) multifrequency distorted Born iterative method (DBIM) is employed in the inversion. Simulation results utilizing synthetic scattering data are given. Calibration of the very early time electromagnetic (VETEM) experimental waveforms is detailed along with major problems encountered in practice and their solutions. This discussion is followed by the results of a large scale application of the method to the experimental data provided by the VETEM system of the U.S. Geological Survey. The method is shown to have a computational complexity that is promising for on-site inversion.

IEEE Transactions on Geoscience and Remote Sensing↗
USGS1959

Test of 34 therapeutic agents for control of kidney disease in trout

Sixteen strains of fish kidney disease bacterium were tested in vitro to determine their reaction to 34 therapeutic agents. On the basis of the results obtained ten of the drugs were employed in experimental therapy of kidney disease in eastern brook trout (Salvelinus fontinalis). Erythromycin at the rate of 100 milligrams per kilogram of fish per day (4.5 grams per 100 pounds of fish) for 21 days gave the best results. Other drugs gave only temporary benefit if any.

Transactions of the American Fisheries Society↗
USGS1987

Bedform alignment in directionally varying flows

Many kinds of sediment bedforms are presumed to trend either normal or parallel to the direction of sediment transport. For this reason, the trend of bedforms observed by remote sensing or by field observations is commonly used as an indicator of the direction of sediment transport. Such presumptions regarding bedform trend were tested experimentally in bidirectional flows by rotating a sand-covered board in steady winds. Transverse, oblique, and longitudinal bedforms were created by changing only two parameters: the angle between the two winds and the proportions of sand transported in the two directions. Regardless of whether the experimental bedforms were transverse, oblique, or longitudinal (as defined by the bedform trend relative to the resultant transport direction), they all had trends that yielded the maximum gross transport across the bedforms. The fact that many of the experimental bedforms were neither transverse nor parallel to the resultant transport direction suggests that transport directions cannot be accurately determined by presuming such alignment.

Science↗
USGS2005

Resilience of predators to fishing pressure on coral patch reefs

Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could result from their protracted recruitment seasons, high immigration rates, cryptic habits, or naturally high abundances. A major factor was the high immigration rates of lizardfish, replacing lizardfish and other less mobile piscivores removed from the reefs by spearing. On the fished reefs, the removed lizardfish population replaced itself >20 times during the experiment; other piscivorous taxa replaced themselves only 5 times.

Journal of Experimental Marine Biology and Ecology↗
USGS2003

Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory-Evaluation of alkaline persulfate digestion as an alternative to Kjeldahl digestion for determination of total and dissolved nitrogen and phosphorus in water

Alkaline persulfate digestion was evaluated and validated as a more sensitive, accurate, and less toxic alternative to Kjeldahl digestion for routine determination of nitrogen and phosphorus in surface- and ground-water samples in a large-scale and geographically diverse study conducted by U.S. Geological Survey (USGS) between October 1, 2001, and September 30, 2002. Data for this study were obtained from about 2,100 surface- and ground-water samples that were analyzed for Kjeldahl nitrogen and Kjeldahl phosphorus in the course of routine operations at the USGS National Water Quality Laboratory (NWQL). These samples were analyzed independently for total nitrogen and total phosphorus using an alkaline persulfate digestion method developed by the NWQL Methods Research and Development Program. About half of these samples were collected during nominally high-flow (April-June) conditions and the other half were collected during nominally low-flow (August-September) conditions. The number of filtered and whole-water samples analyzed from each flow regime was about equal.By operational definition, Kjeldahl nitrogen (ammonium + organic nitrogen) and alkaline persulfate digestion total nitrogen (ammonium + nitrite + nitrate + organic nitrogen) are not equivalent. It was necessary, therefore, to reconcile this operational difference by subtracting nitrate + nitrite concentra-tions from alkaline persulfate dissolved and total nitrogen concentrations prior to graphical and statistical comparisons with dissolved and total Kjeldahl nitrogen concentrations. On the basis of two-population paired t-test statistics, the means of all nitrate-corrected alkaline persulfate nitrogen and Kjeldahl nitrogen concentrations (2,066 paired results) were significantly different from zero at the p = 0.05 level. Statistically, the means of Kjeldahl nitrogen concentrations were greater than those of nitrate-corrected alkaline persulfate nitrogen concentrations. Experimental evidence strongly suggests, however, that this apparent low bias resulted from nitrate interference in the Kjeldahl digestion method rather than low nitrogen recovery by the alkaline persulfate digestion method. Typically, differences between means of Kjeldahl nitrogen and nitrate-corrected alkaline persulfate nitrogen in low-nitrate concentration (< 0.1 milligram nitrate nitrogen per liter) subsets of filtered surface- and ground-water samples were statistically equivalent to zero at the p =level.Paired analytical results for dissolved and total phosphorus in Kjeldahl and alkaline persulfate digests were directly comparable because both digestion methods convert all forms of phosphorus in water samples to orthophosphate. On the basis of two-population paired t-test statistics, the means of all Kjeldahl phosphorus and alkaline persulfate phosphorus concentrations (2,093 paired results) were not significantly different from zero at the p = 0.05 level. For some subsets of these data, which were grouped according to water type and flow conditions at the time of sample collection, differences between means of Kjeldahl phosphorus and alkaline persulfate phosphorus concentrations were not equivalent to zero at the p = 0.05 level. Differences between means of these subsets, however, were less than the method detection limit for phosphorus (0.007 milligram phosphorus per liter) by the alkaline persulfate digestion method, and were therefore analytically insignificant.This report provides details of the alkaline persulfate digestion procedure, interference studies, recovery of various nitrogen- and phosphorus-containing compounds, and other analytical figures of merit. The automated air-segmented continuous flow methods developed to determine nitrate and orthophosphate in the alkaline persulfate digests also are described. About 125 microliters of digested sample are required to determine nitrogen and phosphorus in parallel at a rate of about 100 samples per hour with less than 1-percent sample in

Water-Resources Investigations Report↗
USGS2014

Impact of stressors on transmission potential of Renibacterium salmoninarum in Chinook salmon

Renibacterium salmoninarum is the causative agent of bacterial kidney disease (BKD) affecting several species of Pacific salmon. The severity of BKD can range from a chronic infection to overt disease with high mortality as in the case of large losses of adult Chinook salmon ( Oncorhynchus tshawytscha ) in the Great Lakes during late 1980s. The goal of this study was to empirically evaluate how environmental stressors relevant to the Great Lakes impact R. salmoninarum disease progression and bacterial shedding, the latter parameter being a proxy of horizontal transmission. In the first study (Aim 1), we focused on how endogenous host thiamine levels and dietary fatty acids impacted resistance of Chinook salmon to R. salmoninarum . Juvenile fish were fed one of four experimental diets, including a (1) thiamine replete diet formulated with fish oil, (2) thiamine deplete diet formulated with fish oil, (3) thiamine replete diet formulated with soybean oil, and (4) thiamine deplete diet formulated with soybean oil, before being challenged with buffer or R. salmoninarum . We observed significantly higher mortality in the R. salmoninarum infected groups relative to the corresponding mock controls in only the thiamine replete diet groups. We also observed a significant effect of time and diet on kidney bacterial load and bacterial shedding, with a significant trend towards higher shedding and bacterial load in the fish oil &ndash; thiamine replete diet group. However, during the course of the study, unexpected mortality occurred in all groups attributed to the myxozoan parasite Ceratomyxa shasta . Since the fish were dually-infected with C. shasta , we evaluated parasite DNA levels (parasitic load) in the kidney of sampled fish. We found that parasite load varied across time points but there was no significant effect of diet. However, parasite load did differ significantly between the mock and R. salmoninarum challenge groups with a trend towards longer persistence of C. shasta DNA in fish dually-infected with R. salmoninarum . Overall, results in Aim 1 indicated: 1) that the experimental diets impacted bacterial but not parasitic infection patterns, 2) that low thiamine levels may reduce the severity of R. salmoninarum infection, and 3) that fish infected with R. salmoninarum may be less able to clear a secondary infection with a parasite. The second study (Aim 2) focused on the role that temperature plays in the progression of BKD from the asymptomatic infected state to a diseased state. Lake Michigan Chinook salmon were infected with R. salmoninarum at a common intermediate water temperature and, at 2 weeks post-infection, were split into three temperature groups (cool, intermediate and warm). Fish held at the cool temperature (8&deg;C) had significantly greater mortality following challenge, significantly higher levels of bacteria in the kidney, and shed significantly greater amounts of bacteria into the water relative to fish held at the intermediate (12&deg;C) and warm (15&deg;C) temperatures. Thus, our results support the hypothesis that, for BKD, warm temperature stress does not contribute to greater disease progression and increased bacterial shedding. Our laboratory results are consistent with field epidemiological observations that BKD mortality in the Great Lakes is commonly associated with declining water temperatures in the fall or when water temperatures begin to increase but are still cool after over-wintering.

Report↗
USGS2006

Iron isotope fractionation during microbially stimulated Fe(II) oxidation and Fe(III) precipitation

Interpretation of the origins of iron-bearing minerals preserved in modern and ancient rocks based on measured iron isotope ratios depends on our ability to distinguish between biological and non-biological iron isotope fractionation processes. In this study, we compared 56Fe/54Fe ratios of coexisting aqueous iron (Fe(II)aq, Fe(III)aq) and iron oxyhydroxide precipitates (Fe(III)ppt) resulting from the oxidation of ferrous iron under experimental conditions at low pH (<3). Experiments were carried out using both pure cultures of Acidothiobacillus ferrooxidans and sterile controls to assess possible biological overprinting of non-biological fractionation, and both SO42- and Cl- salts as Fe(II) sources to determine possible ionic/speciation effects that may be associated with oxidation/precipitation reactions. In addition, a series of ferric iron precipitation experiments were performed at pH ranging from 1.9 to 3.5 to determine if different precipitation rates cause differences in the isotopic composition of the iron oxyhydroxides. During microbially stimulated Fe(II) oxidation in both the sulfate and chloride systems, 56Fe/54Fe ratios of residual Fe(II)aq sampled in a time series evolved along an apparent Rayleigh trend characterized by a fractionation factor ??Fe(III)aq-Fe(II)aq???1.0022. This fractionation factor was significantly less than that measured in our sterile control experiments (???1.0034) and that predicted for isotopic equilibrium between Fe(II)aq and Fe(III)aq (???1.0029), and thus might be interpreted to reflect a biological isotope effect. However, in our biological experiments the measured difference in 56Fe/54Fe ratios between Fe(III)aq, isolated as a solid by the addition of NaOH to the final solution at each time point under N2-atmosphere, and Fe(II)aq was in most cases and on average close to 2.9??? (??Fe(III)aq-Fe(II)aq ???1.0029), consistent with isotopic equilibrium between Fe(II)aq and Fe(III)aq. The ferric iron precipitation experiments revealed that 56Fe/54Fe ratios of Fe(III)aq were generally equal to or greater than those of Fe(III)ppt, and isotopic fractionation between these phases decreased with increasing precipitation rate and decreasing grain size. Considered together, the data confirm that the iron isotope variations observed in our microbial experiments are primarily controlled by non-biological equilibrium and kinetic factors, a result that aids our ability to interpret present-day iron cycling processes but further complicates our ability to use iron isotopes alone to identify biological processing in the rock record. ?? 2005 Elsevier Inc. All rights reserved.

Geochimica et Cosmochimica Acta↗
USGS1969

Experimental studies of pegmatite genesis: I. A model for the derivation and crystallization of granitic pegmatites

The genesis of granitic igneous pegmatites is here considered in terms of a model conceived from results of field and laboratory studies and subsequently tested by means of experimental investigations. This model emphasizes the roles of water (and/or other relatively volatile substances), both as a dissolved constituent in granitic magmas and as the dominant constituent of a separate fluid phase that is in the supercritical state under most conditions of pegmatite formation. Pegmatite magma, as distinguished by a content of dissolved water that is high relative to the limit of solubility under existing confining pressure, can be formed either through partial melting of crustal materials or as rest-liquid in a cooling igneous body yielding dominantly anhydrous crystalline phases. Such granitic magma can be expected to consolidate according to the following three-fold sequence: 1. Crystallization from hydrous silicate melt, yielding anhydrous solid phases with or without OH-bearing phases. The product is characterized by normal phaneritic textures that generafly are coarse grained. It has been termed pegmatite in some occurrences, and granite in others. 2. Crystallization concomitantly from silicate melt and from a coexisting exsolved aqueous fluid of considerably lower viscosity, yielding giant-textured pegmatite along with much finer-grained, even aplitic, mineral aggregates. Segregation of these products can vary enormously in scale and degree. Partitioning of constituents between melt and aqueous fluid, rapid diffusion of constituents through the aqueous phase, and gravitational rising of this fluid through the system contribute to formation of pods, zones, and other rock units of unusual composition and texture. 3. Crystallization in the absence of silicate melt, yielding a wide variety of late-stage products. These include so-called "pocket minerals" and numerous mineral aggregates formed through exchanges of material among aqueous fluid and earlier-formed crystal-line phases. Development of pegmatite bodies can begin with either Step 1 or Step 2, but it is suggested that the processes involved in Step 2 are essential to the formation of all true pegmatites of igneous origin. The appearance of a second fluid phase, in general a supercritical aqueous fluid derived from the crystallizing melt, is regarded as the decisive event; it is promptly followed by fundamental changes in distribution and texture of the solid phases being formed. The processes can operate effectively in a fully closed system, and they also can modify the surrounding rocks if the system is open at any stage. Step 1 can include reactions between magma and earlier-formed crystals, but far more rapid and extensive exchanges of materials are subsequently effected by processes included in Steps 2 and 3; indeed, such exchanges also can account satisfactorily for pegmatites of metamorphic origin. Crystallization of most granitic magmas in the absence of a separate aqueous phase probably would begin within the temperature range 1,300°-650 ° C, the specific liquidus temperature depending mainly upon the amounts of volatile constituents held in solution at the time. This compositional factor also would be important in controlling the stage of crystallization-late, intermediate, or early-at which a separate aqueous fluid would make its appearance. Depending upon confining pressure as dictated by geologic conditions for a given system, the stage in crystallization represented by the presence of both silicate melt and aqueous fluid could begin within about the same temperature range of 1.300°-650 ° C. Exhaustion of the melt could occur within range extending downward to temperatures of 600C or even somewhat lower. Textural and structural features appear to be the most reliable indicators of the stages and fundamental processes involved in crystallization of both natural and synthetic pegmatites. The contrasting processes of crystallization from one fluid and from more than one fluid can operate over such broad P-T-X ranges that simple genetic pegmatite classifications based largely upon "key minerals," presumed temperature or pressure intervals, or the presence or absence of supercritical conditions appear to be somewhat unrealistic. © 1969 Society of Economic Geologists, Inc.

Economic Geology↗
USGS2014

Adaptive restoration of river terrace vegetation through iterative experiments

Restoration projects can involve a high degree of uncertainty and risk, which can ultimately result in failure. An adaptive restoration approach can reduce uncertainty through controlled, replicated experiments designed to test specific hypotheses and alternative management approaches. Key components of adaptive restoration include willingness of project managers to accept the risk inherent in experimentation, interest of researchers, availability of funding for experimentation and monitoring, and ability to restore sites as iterative experiments where results from early efforts can inform the design of later phases. This paper highlights an ongoing adaptive restoration project at Zion National Park (ZNP), aimed at reducing the cover of exotic annual Bromus on riparian terraces, and revegetating these areas with native plant species. Rather than using a trial-and-error approach, ZNP staff partnered with academic, government, and private-sector collaborators to conduct small-scale experiments to explicitly address uncertainties concerning biomass removal of annual bromes, herbicide application rates and timing, and effective seeding methods for native species. Adaptive restoration has succeeded at ZNP because managers accept the risk inherent in experimentation and ZNP personnel are committed to continue these projects over a several-year period. Techniques that result in exotic annual Bromus removal and restoration of native plant species at ZNP can be used as a starting point for adaptive restoration projects elsewhere in the region.

Utah↗
USGS2025

When do single-species occupancy models outperform multispecies models?

Occupancy models have become increasingly popular for species monitoring and assessment, in part, because detection/non-detection data are readily obtained using a variety of methods. Multispecies occupancy models (MSOMs) can yield more accurate parameter estimates than single-species models (SSOMs) with less data through their hierarchical structure, making MSOMs an attractive option when species are hard to detect or when data collection is constrained, leading to sparse datasets. Such constraints may arise from limited sampling resources, but also occur in rare species monitoring or where preliminary results are desired to inform adaptive management. Further, experimental habitat treatments often impose spatial constraints on sampling based on the scale of their implementation. Whether a MSOM outperforms SSOMs depends on the volume of data, characteristics of the ecological community, research goals of a study and how these factors align with modeling assumptions. We performed a simulation study of hypothetical pollinator communities under varying sampling intensities for scenarios in which experimental habitat treatments produced different community-level effects. We fit occupancy models to simulated datasets and assessed model performance. At lower sampling intensities (< 20 spatial replicates and < 4 temporal replicates), MSOM community-level treatment effect estimates were biased. Even at twice this sampling intensity, SSOMs yielded more accurate species-specific effect estimates in treatment effect scenarios with high variance. In some cases, MSOMs can pull species in the tails of distributions too far toward the community mean effect, which risks incorrect conclusions concerning whether treatments help or harm individual species. When quantifying species-specific effects is the main objective, particularly for rarely observed species, SSOMs are more robust to outliers across a range of community response scenarios. Researchers can use this information to inform study design, guide simulation studies and decide whether the higher precision of MSOMs outweighs risks of improperly estimated effects for some species.

Ecology and Evolution↗
USGS2002

Improving the analysis of slug tests

This paper examines several techniques that have the potential to improve the quality of slug test analysis. These techniques are applicable in the range from low hydraulic conductivities with overdamped responses to high hydraulic conductivities with nonlinear oscillatory responses. Four techniques for improving slug test analysis will be discussed: use of an extended capability nonlinear model, sensitivity analysis, correction for acceleration and velocity effects, and use of multiple slug tests. The four-parameter nonlinear slug test model used in this work is shown to allow accurate analysis of slug tests with widely differing character. The parameter ?? represents a correction to the water column length caused primarily by radius variations in the wellbore and is most useful in matching the oscillation frequency and amplitude. The water column velocity at slug initiation (V0) is an additional model parameter, which would ideally be zero but may not be due to the initiation mechanism. The remaining two model parameters are A (parameter for nonlinear effects) and K (hydraulic conductivity). Sensitivity analysis shows that in general ?? and V0 have the lowest sensitivity and K usually has the highest. However, for very high K values the sensitivity to A may surpass the sensitivity to K. Oscillatory slug tests involve higher accelerations and velocities of the water column; thus, the pressure transducer responses are affected by these factors and the model response must be corrected to allow maximum accuracy for the analysis. The performance of multiple slug tests will allow some statistical measure of the experimental accuracy and of the reliability of the resulting aquifer parameters. ?? 2002 Elsevier Science B.V. All rights reserved.

Journal of Hydrology↗
USGS2009

Error evaluation of methyl bromide aerodynamic flux measurements

Methyl bromide volatilization fluxes were calculated for a tarped and a nontarped field using 2 and 4 hour sampling periods. These field measurements were averaged in 8, 12, and 24 hour increments to simulate longer sampling periods. The daily flux profiles were progressively smoothed and the cumulative volatility losses increased by 20 to 30% with each longer sampling period. Error associated with the original flux measurements was determined from linear regressions of measured wind speed and air concentration as a function of height, and averaged approximately 50%. The high errors resulted from long application times, which resulted in a nonuniform source strength; and variable tarp permeability, which is influenced by temperature, moisture, and thickness. The increase in cumulative volatilization losses that resulted from longer sampling periods were within the experimental error of the flux determination method.

ACS Symposium Series↗
USGS1997

Unified mechanism of alkali and alkaline earth catalyzed gasification reactions of carbon by CO2 and H2O

From molecular orbital calculations, a unified mechanism is proposed for the gasification reactions of graphite by CO 2 and H 2 O, both uncatalyzed and catalyzed by alkali and alkaline earth catalysts. In this mechanism, there are two types of oxygen intermediates that are bonded to the active edge carbon atoms: an in-plane semiquinone type, C f (O), and an off-plane oxygen bonded to two saturated carbon atoms that are adjacent to the semiquinone species, C(O)C f (O). The rate-limiting step is the decomposition of these intermediates by breaking the C−C bonds that are connected to C f (O). A new rate equation is derived for the uncatalyzed reactions, and that for the catalyzed reactions is readily available from the proposed mechanism. The proposed mechanism can account for several unresolved experimental observations: TPD and TK (transient kinetics) desorption results of the catalyzed systems, the similar activation energies for the uncatalyzed and catalyzed reactions, and the relative activities of the alkali and alkaline earth elements. The net charge of the edge carbon active site is substantially changed by gaining electron density from the alkali or alkaline earth element (by forming C−O−M, where M stands for metal). The relative catalytic activities of these elements can be correlated with their abilities of donating electrons and changing the net charge of the edge carbon atom. As shown previously (Chen, S. G.; Yang, R. T. J . Catal . 1993 , 141 , 102), only clusters of the alkali compounds are active. This derives from the ability of the clusters to dissociate CO 2 and H 2 O to form O atoms and the mobility of the dissociated O atoms facilitated by the clusters.

Energy and Fuels↗
USGS2000

Influence of acid volatile sulfide and metal concentrations on metal bioavailability to marine invertebrates in contaminated sediments

An 18-day microcosm study was conducted to evaluate the influence of acid volatile sulfides (AVS) and metal additions on bioaccumulation from sediments of Cd, Ni, and Zn in two clams ( Macoma balthica and Potamocorbula amurensis ) and three marine polychaetes ( Neanthes arenaceodentata, Heteromastus filiformis, and Spiophanes missionensis ). Manipulation of AVS by oxidation of naturally anoxic sediments allowed use of metal concentrations typical of nature and evaluation of processes important to chronic metal exposure. A vertical sediment column similar to that often found in nature was used to facilitate realistic biological behavior. Results showed that AVS or porewater (PW) metals controlled bioaccumulation in only 2 of 15 metal-animal combinations. Bioaccumulation of all three metals by the bivalves was related significantly to metal concentrations extracted from sediments (SEM) but not to [SEM − AVS] or PW metals. SEM predominantly influenced bioaccumulation of Ni and Zn in N. arenaceodentata , but Cd bioaccumulation followed PW Cd concentrations. SEM controlled tissue concentrations of all three metals in H. filiformis and S. missionensis , with minor influences from metal-sulfide chemistry. Significant bioaccumulation occurred when SEM was only a small fraction of AVS in several treatments. Three factors appeared to contribute to the differences between these bioaccumulation results and the results from toxicity tests reported previously: differences in experimental design, dietary uptake, and biological attributes of the species, including mode and depth of feeding.

Environmental Science & Technology↗
USGS1999

On the relative importance of pool morphology and woody debris to distributions of shrimp in a Puerto Rican headwater stream

In this paper, we report the sizes and distributional orientation of woody debris in a headwater rainforest stream in the Luquillo Experimental Forest (LEF), Puerto Rico. We also provide results of a 4-month study of a wood addition experiment designed to increase cover for benthic macroinvertebrates (freshwater shrimp). We added branch-sized woody debris to 20 pools in three streams. We trapped four species of freshwater shrimp (two species of benthic detritivores and two predatory shrimp species) during each of the 4 months following wood additions. An analysis of pool morphology (maximum depth, surface area and volume) provided a useful predictor of shrimp abundances. In general, numbers of shrimps increased with sizes of stream pools. A repeated measures ANOVA demonstrated no effect of woody debris additions on total numbers of shrimp per pool area. Two detritivore species (Atya lanipes, a filter feeder and Xiphocaris elongata, a shredder) decreased in abundance with increased woody debris and there was no statistical relationship between woody debris additions and predators (Macrobrachium carcinus and M. crenulatum). Small woody debris additions may have altered flow velocities that were important to filter-feeding Atya at the microhabitat scale, although the overall velocities within pools were not altered by wood additions. Lower numbers of Atya and Xiphocaris in two of the three streams may result from the occurrence of two predaceous fishes (American eel and mountain mullet) and more predatory Macrobrachium in these streams. One likely interpretation of the results of this study is that the stream pools in these study reaches had sufficient habitat structure provided by numerous rock crevices (among large rocks and boulders) to provide refuge from predators. Addition of woody debris did not add significantly to the existing structure. These results may not apply to stream channels with sand and gravel substrata where crevices and undercut banks are lacking and where woody debris often plays a major role by providing structure and refuge.

Hydrobiologia↗
USGS2012

Hydrate morphology: Physical properties of sands with patchy hydrate saturation

The physical properties of gas hydrate-bearing sediments depend on the volume fraction and spatial distribution of the hydrate phase. The host sediment grain size and the state of effective stress determine the hydrate morphology in sediments; this information can be used to significantly constrain estimates of the physical properties of hydrate-bearing sediments, including the coarse-grained sands subjected to high effective stress that are of interest as potential energy resources. Reported data and physical analyses suggest hydrate-bearing sands contain a heterogeneous, patchy hydrate distribution, whereby zones with 100% pore-space hydrate saturation are embedded in hydrate-free sand. Accounting for patchy rather than homogeneous hydrate distribution yields more tightly constrained estimates of physical properties in hydrate-bearing sands and captures observed physical-property dependencies on hydrate saturation. For example, numerical modeling results of sands with patchy saturation agree with experimental observation, showing a transition in stiffness starting near the series bound at low hydrate saturations but moving toward the parallel bound at high hydrate saturations. The hydrate-patch size itself impacts the physical properties of hydrate-bearing sediments; for example, at constant hydrate saturation, we find that conductivity (electrical, hydraulic and thermal) increases as the number of hydrate-saturated patches increases. This increase reflects the larger number of conductive flow paths that exist in specimens with many small hydrate-saturated patches in comparison to specimens in which a few large hydrate saturated patches can block flow over a significant cross-section of the specimen.

Journal of Geophysical Research B: Solid Earth↗