USGS Science⌕ Search

SEARCH · USGS Science

Results for “Current Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19Linked to original sources
USGS1988

The Detroit River, Michigan: an ecological profile

A part of the connecting channel system between Lake Huron and Lake Erie, the Detroit River forms an integral link between the two lakes for both humans and biological resources such as fish, nutrients, and plant detritus. This profile summarizes existing scientific information on the ecological structure and functioning of this ecosystem. Topics include the geological history of the region, climatic influences, river hydrology, lower trophic-level biotic components, native and introduced fishes, waterfowl use, ecological interrelationships, commercial and recreational uses of the river, and current management issues. Despite urbanization, the river still supports diverse fish, waterfowl, and benthic populations. Management issues include sewer overflows; maintenance dredging for navigation and port activities; industrial discharges of potentially hazardous materials; and wetland, fishery, and waterfowl protection and enhancement.

Biological Report↗
USGS2014

Vaccination against bacterial kidney disease

Bacterial kidney disease (BKD) of salmonid fishes, caused by Renibacterium salmoninarum , has been recognized as a serious disease in salmonid fishes since the 1930s. This chapter discusses the occurrence and significance, etiology, and pathogenesis of BKD. It then describes the different vaccination procedures and the effects and side-effects of vaccination. Despite years of research, however, only a single vaccine has been licensed for prevention of BKD, and has demonstrated variable efficacy. Therefore, in addition to a presentation of the current status of BKD vaccination, a discussion of potential future directions for BKD vaccine development is included in the chapter. This discussion is focused on the unique characteristics of R. salmoninarum and its biology, as well as aspects of the salmonid immune system that might be explored specifically to develop more effective vaccines for BKD prevention.

Book chapter↗
USGS2008

Management concerns about known and potential impacts of lead use in shooting and in fishing activities

We present a summary of the technical review, jointly requested by the American Fisheries Society and The Wildlife Society, addressing the hazards to wildlife resulting from lead objects or fragments introduced into aquatic and terrestrial environments from the use of ammunition and fishing tackle. Impacts from lead are well documented in humans, as well as in terrestrial and aquatic organisms. Concern about impacts from lead ammunition and fishing tackle has resulted in the development of non-lead alternatives, educational campaigns, and regulations to restrict their use. This article discusses the general biological impacts of lead exposure from fishing and shooting activities to fish, wildlife, and humans; summarizes existing and proposed regulations to reduce lead exposure to biota; reviews alternatives to lead materials that are currently available for fishing; and outlines options for further actions to reduce wildlife and human exposure to lead from fishing activities.

Fisheries↗
USGS2012

Changing Arctic ecosystems--research to understand and project changes in marine and terrestrial ecosystems of the Arctic

Ecosystems and their wildlife communities are not static; they change and evolve over time due to numerous intrinsic and extrinsic factors. A period of rapid change is occurring in the Arctic for which our current understanding of potential ecosystem and wildlife responses is limited. Changes to the physical environment include warming temperatures, diminishing sea ice, increasing coastal erosion, deteriorating permafrost, and changing water regimes. These changes influence biological communities and the ways in which human communities interact with them. Through the new initiative Changing Arctic Ecosystems (CAE) the U.S. Geological Survey (USGS) strives to (1) understand the potential suite of wildlife population responses to these physical changes to inform key resource management decisions such as those related to the Endangered Species Act, and (2) provide unique insights into how Arctic ecosystems are responding under new stressors. Our studies examine how and why changes in the ice-dominated ecosystems of the Arctic are affecting wildlife and will provide a better foundation for understanding the degree and manner in which wildlife species respond and adapt to rapid environmental change. Changes to Arctic ecosystems will be felt broadly because the Arctic is a production zone for hundreds of species that migrate south for the winter. The CAE initiative includes three major research themes that span Arctic ice-dominated ecosystems and that are structured to identify and understand the linkages between physical processes, ecosystems, and wildlife populations. The USGS is applying knowledge-based modeling structures such as Bayesian Networks to integrate the work.

Arctic↗
USGS2007

Development of the Hydroecological Integrity Assessment Process for Determining Environmental Flows for New Jersey Streams

The natural flow regime paradigm and parallel stream ecological concepts and theories have established the benefits of maintaining or restoring the full range of natural hydrologic variation for physiochemical processes, biodiversity, and the evolutionary potential of aquatic and riparian communities. A synthesis of recent advances in hydroecological research coupled with stream classification has resulted in a new process to determine environmental flows and assess hydrologic alteration. This process has national and international applicability. It allows classification of streams into hydrologic stream classes and identification of a set of non-redundant and ecologically relevant hydrologic indices for 10 critical sub-components of flow. Three computer programs have been developed for implementing the Hydroecological Integrity Assessment Process (HIP): (1) the Hydrologic Indices Tool (HIT), which calculates 171 ecologically relevant hydrologic indices on the basis of daily-flow and peak-flow stream-gage data; (2) the New Jersey Hydrologic Assessment Tool (NJHAT), which can be used to establish a hydrologic baseline period, provide options for setting baseline environmental-flow standards, and compare past and proposed streamflow alterations; and (3) the New Jersey Stream Classification Tool (NJSCT), designed for placing unclassified streams into pre-defined stream classes. Biological and multivariate response models including principal-component, cluster, and discriminant-function analyses aided in the development of software and implementation of the HIP for New Jersey. A pilot effort is currently underway by the New Jersey Department of Environmental Protection in which the HIP is being used to evaluate the effects of past and proposed surface-water use, ground-water extraction, and land-use changes on stream ecosystems while determining the most effective way to integrate the process into ongoing regulatory programs. Ultimately, this scientifically defensible process will help to quantify the effects of anthropogenic changes and development on hydrologic variability and help planners and resource managers balance current and future water requirements with ecological needs.

Scientific Investigations Report↗
USGS1990

Resistance to 3-trifluoromethyl-4-nitrophenol (TFM) in sea lamprey

The lampricide 3-trifluoromethyl-4-nitrophenol (TFM) has been used in the United States and Canada for more than 30 years to control populations of sea lamprey (Petromyzon marinus) in the Great Lakes. There is concern that sea lamprey might become resistant to TFM. Lampricide toxicity tests have been conducted at the Hammond Bay Biological Station, Millersburg, Michigan, since the 1950s and examination of TFM toxicity data for larval lamprey from 1963 to 1987 indicated that sea lamprey have not developed increased resistance to TFM. Maintenance of current control practices are unlikely to cause the development of TFM-resistant sea lamprey strains in the foreseeable future.

Technical Report↗
USGS2013

Integration of bed characteristics, geochemical tracers, current measurements, and numerical modeling for assessing the provenance of beach sand in the San Francisco Bay Coastal System

Over 150 million m 3 of sand-sized sediment has disappeared from the central region of the San Francisco Bay Coastal System during the last half century. This enormous loss may reflect numerous anthropogenic influences, such as watershed damming, bay-fill development, aggregate mining, and dredging. The reduction in Bay sediment also appears to be linked to a reduction in sediment supply and recent widespread erosion of adjacent beaches, wetlands, and submarine environments. A unique, multi-faceted provenance study was performed to definitively establish the primary sources, sinks, and transport pathways of beach-sized sand in the region, thereby identifying the activities and processes that directly limit supply to the outer coast. This integrative program is based on comprehensive surficial sediment sampling of the San Francisco Bay Coastal System, including the seabed, Bay floor, area beaches, adjacent rock units, and major drainages. Analyses of sample morphometrics and biological composition (e.g., Foraminifera) were then integrated with a suite of tracers including 87 Sr/ 86 Sr and 143 Nd/ 144 Nd isotopes, rare earth elements, semi-quantitative X-ray diffraction mineralogy, and heavy minerals, and with process-based numerical modeling, in situ current measurements, and bedform asymmetry to robustly determine the provenance of beach-sized sand in the region.

California↗
USGS1999

Restoration of bighorn sheep metapopulations in and near 15 national parks: Conservation of a severely fragmented species; Volume I, Planning, problem definition, findings, and restoration

Bighorn sheep ( Ovis canadensis ) were historically a ubiquitous species. Prior to the arrival of Europeans, they were seemingly widespread in nearly all steep habitats in the mountains, foothills, river breaks, and prairie badlands of the western United States. However, since catastrophic declines in the late 1800s and early 1900s, most extant populations have existed as small, isolated groups in a highly fragmented distribution. Stochastic events such as seasonal weather change or population fluctuations render these small populations more prone to extirpation than larger populations. Three different subspecies of bighorn sheep were eliminated from 14 of 18 National Park System (NPS) units in the 6-state Intermountain Region of the western United States (Singer 1994). In 1990, when this restoration was initiated, only 4 (18%) of 22 discrete park populations or metapopulations were considered large enough (300-500 animals) to be secure for long-term management. Five (23%) other populations numbered 100-299 animals and 3 (14%) populations numbered 75-99 animals. But, the remaining 10 populations (45%) were either extirpated (n = 2), remnant populations (n = 5, populations of 7-10 animals), or vulnerable to extirpation (n = 3, populations of less than 50 animals). Restoration prior to 1991-96 was largely completed in one NPS unit, but was incomplete in the remaining units. Most bighorn sheep are not federally listed as endangered or threatened species, although the California peninsular population of desert bighorn sheep was recently listed as endangered. The bighorn sheep is a rare or uncommon species that is declining in many parts of its range but is abundant in other areas and still relatively easy to study and manage. The Secretary of the Department of the Interior, Bruce Babbitt, directed the Biological Resources Division of the U.S. Geological Survey in 1993 (when this agency was still the National Biological Service) to research and recover species that were declining to avoid expensive and controversial federal listing. Because the capture and moving of the species are still relatively uncomplicated and because some source stocks are available, aggressive restoration in 15 National Park System units in the former Rocky Mountain Region was recommended in 1990. This report details the 7-year restoration of bighorn sheep to all currently suitable historic habitats in the national parks of the former Rocky Mountain Region (now the Intermountain and Midwest regions of the National Park Service). The purpose of the first phase of the restoration during 1991-93 was to conduct research and population surveys and to formulate the restoration plans. The purpose of the second phase of the initiative during 1994-97 was to conduct GIS-based habitat and biological assessments of prospective restoration sites, write restoration plans, and restore and monitor the released bighorn sheep.

Colorado, Montana, North Dakota, South Dakota, Uta↗
USGS2016

Biological soil crusts as soil stabilizers

Soil erosion is of particular concern in dryland regions, as the sparse cover of vascular plants results in large interspaces unprotected from the erosive forces of wind and water. Thus, most of these soil surfaces are stabilized by physical or biological soil crusts. However, as drylands are extensively used by humans and their animals, these crusts are often disturbed, compromising their stabilizing abilities. As a result, approximately 17.5% of the global terrestrial lands are currently being degraded by wind and water erosion. All components of biocrusts stabilize soils, including green algae, cyanobacteria, fungi, lichens, and bryophytes, and as the biomass of these organisms increases, so does soil stability. In addition, as lichens and bryophytes live atop the soil surface, they provide added protection from raindrop impact that cyanobacteria and fungi, living within the soil, cannot. Much research is still needed to determine the relative ability of individual species and suites of species to stabilize soils. We also need a better understanding of why some individuals or combination of species are better than others, especially as these organisms become more frequently used in restoration efforts.

Book chapter↗
USGS2025

Estimating occupancy of focal bee species

Current bee monitoring efforts have a limited capacity for understanding factors affecting wild bee population changes, including the effects of management. To improve the effectiveness of wild bee monitoring, we first discuss principles of biological monitoring and provide a framework to design monitoring projects to estimate species occupancy, where occupancy is defined as the probability that a Sampling Unit or site is occupied by the focal species. Monitoring practitioners should first define the desired goal or question of monitoring and secondly select the appropriate state variable for monitoring ( e.g ., species richness, occupancy, abundance). These represent two critical, yet often overlooked, steps in the development of wild bee monitoring projects. As with all forms of demographic monitoring, practitioners who are interested in estimating species occupancy will need to develop a sampling scheme tailored to meet their monitoring objectives. Defining key sampling terms will provide the architecture of their scheme, including the Area of Interest, Sampling Unit, Season, and Replicate Survey. We also highlight data standards, including core data fields that must be collected during Surveys for bee occupancy data and additional, recommended data fields . We illustrate how these monitoring concepts are being applied to the design of a real-world monitoring project for the federally endangered rusty patched bumble bee ( Bombus affinis Cresson). This framework was developed in association with the U.S. National Native Bee Monitoring Network.

Journal of Melittology↗
USGS1976

Geothermal handbook

The Bureau of Land Management offered over 400,000 hectares (one million acres) for geothermal exploration and development in 1975, and figure is expected to double this year. The Energy Research and Development Administration hopes for 10-15,000 megawatts of geothermal energy by 1985, which would require, leasing over 16.3 million hectares (37 million acres) of land, at least half of which is federal land. Since there is an 8 to 8-1/2 year time laf between initial exploration and full field development, there would have to be a ten-fold increase in the amount of federal land leased within the next three years. Seventy percent of geothermal potential, 22.3 million hectares (55 million acres), is on federal lands in the west. The implication for the Service are enormous and the problems immediate. Geothermal resource are so widespread they are found to some extent in most biomes and ecosystems in the western United States. In most cases exploitation and production of geothermal resources can be made compatible with fish and wildlife management without damage, if probable impacts are clearly understood and provided for before damage has unwittingly been allowed to occur. Planning for site suitability and concern with specific operating techniques are crucial factors. There will be opportunities for enhancement: during exploration and testing many shallow groundwater bodies may be penetrated which might be developed for wildlife use. Construction equipment and materials needed for enhancement projects will be available in areas heretofore considered remote projects will be available in areas heretofore considered remote by land managers. A comprehensive knowledge of geothermal development is necessary to avoid dangers and seize opportunities. This handbook is intended to serve as a working tool in the field. It anticipated where geothermal resource development will occur in the western United States in the near future. A set of environmental assessment procedures are presented which will allow the Service to provide input to the federal leasing process. As an impact information source by which to judge the appropriateness of a specific activity at a specific site, a discussion of activities-impacts is provided on a phase by phase basis. Mitigation and possible enhancement techniques are also presented so that the impacts of the development can be dealt with and the fish and wildlife situation improved. The Service can achieve its objective only if biological input is made throughout the entire process of geothermal development, from exploration to testing to full field operation. A discussion of geothermal leasing procedures emphasizes the timing and nature of Service participation in current interagency lease processing, and there is a provision for the utilization of new knowledge, techniques, and responses as experience is accumulated.

FWS/OBS↗
USGS2019

Amphibian conservation in the Anthropocene

Research is necessary to identify patterns in nature, to understand how a system functions, and to make predictions about the future state of an ecosystem. Applied research in conservation biology can identify effective strategies to maintain biodiversity, though many papers end with the conclusion that more research is needed. However, more research does not necessarily lead to solutions. We use the ongoing global decline of amphibians as a salient example to highlight limitations in current conservation research, and to focus on finding solutions which are directly relevant for conservation. While research has been conducted since declines were first detected in the 1990s, outside a few specific examples, little progress in conservation has been achieved. We suggest that the case of amphibian declines is relevant to conservation science in general, as the current paradigm for conservation is that management is planned after research is completed; research and management are not effectively (and not directly) connected. This disconnect illustrates the knowledge-action divide which has been identified as a serious deficiency in conservation. Accordingly, we use this introductory paper to the Special Issue (Amphibian conservation in the Anthropocene: Progress and challenges) to describe amphibians as a conservation dilemma, and to make the case for a different, more pragmatic, and more solutions-focused view of conservation research.

Kansas, Oklahoma↗
USGS2010

Challenges of predicting the potential distribution of a slow-spreading invader: a habitat suitability map for an invasive riparian tree

Understanding the potential spread of invasive species is essential for land managers to prevent their establishment and restore impacted habitat. Habitat suitability modeling provides a tool for researchers and managers to understand the potential extent of invasive species spread. Our goal was to use habitat suitability modeling to map potential habitat of the riparian plant invader, Russian olive ( Elaeagnus angustifolia ). Russian olive has invaded riparian habitat across North America and is continuing to expand its range. We compiled 11 disparate datasets for Russian olive presence locations (n = 1,051 points and 139 polygons) in the western US and used Maximum entropy (Maxent) modeling to develop two habitat suitability maps for Russian olive in the western United States: one with coarse-scale water data and one with fine-scale water data. Our models were able to accurately predict current suitable Russian olive habitat (Coarse model: training AUC = 0.938, test AUC = 0.907; Fine model: training AUC = 0.923, test AUC = 0.885). Distance to water was the most important predictor for Russian olive presence in our coarse-scale water model, but it was only the fifth most important variable in the fine-scale model, suggesting that when water bodies are considered on a fine scale, Russian olive does not necessarily rely on water. Our model predicted that Russian olive has suitable habitat further west from its current distribution, expanding into the west coast and central North America. Our methodology proves useful for identifying potential future areas of invasion. Model results may be influenced by locations of cultivated individuals and sampling bias. Further study is needed to examine the potential for Russian olive to invade beyond its current range. Habitat suitability modeling provides an essential tool for enhancing our understanding of invasive species spread.

Biological Invasions↗
USGS2015

The U.S. Geological Survey’s nonindigenous aquatic species database: over thirty years of tracking introduced aquatic species in the United States (and counting)

The U.S. Geological Survey’s Nonindigenous Aquatic Species (NAS) Database has tracked introductions of freshwater aquatic organisms in the United States for the past four decades. A website provides access to occurrence reports, distribution maps, and fact sheets for more than 1,000 species. The site also includes an on-line reporting system and an alert system for new occurrences. We provide an historical overview of the database, a description of its current capabilities and functionality, and a basic characterization of the data contained within the database.

Management of Biological Invasions↗
USGS2013

Plant invasions in protected areas of tropical pacific islands, with special reference to Hawaii

Isolated tropical islands are notoriously vulnerable to plant invasions. Serious management for protection of native biodiversity in Hawaii began in the 1970s, arguably at Hawaii Volcanoes National Park. Concerted alien plant management began there in the 1980s and has in a sense become a model for protected areas throughout Hawaii and Pacific Island countries and territories. We review the relative successes of their strategies and touch upon how their experience has been applied elsewhere. Protected areas in Hawaii are fortunate in having relatively good resources for addressing plant invasions, but many invasions remain intractable, and invasions from outside the boundaries continue from a highly globalised society with a penchant for horticultural novelty. There are likely few efforts in most Pacific Islands to combat alien plant invasions in protected areas, but such areas may often have fewer plant invasions as a result of their relative remoteness and/or socio-economic development status. The greatest current needs for protected areas in this region may be for establishment of yet more protected areas, for better resources to combat invasions in Pacific Island countries and territories, for more effective control methods including biological control programme to contain intractable species, and for meaningful efforts to address prevention and early detection of potential new invaders.

Hawaii↗
USGS2024

Groundwater-Surface water interactions research: Past trends and future directions

Interactions between groundwater and surface water sustain groundwater-dependent ecosystems and regulate river temperature and biogeochemical cycles, amongst many other processes. These interactions occur in freshwater environments including rivers, springs, lakes, and wetlands, and in coastal environments via tidal pumping, submarine groundwater discharge, and seawater intrusion. Here, we explore groundwater-surface water interactions research using bibliometric analyses of titles, abstracts, and keywords from 20,275 journal papers published between 1970 and 2023 extracted from Scopus. Analyses show that research into groundwater-surface water interactions is highly multi-disciplinary, with growing contributions from the social and biological sciences. The number of groundwater-surface water interactions papers is rapidly increasing with over 1200 papers published per year since 2020. Drawing on our data-driven approach and expert knowledge, we synthesise current research trends and identify critical future research directions. Despite the thousands of papers on groundwater-surface water interactions, important processes are still difficult to quantify or predict at meaningful spatial scales to inform water-resources management. We see benefits in future groundwater-surface water interactions research focusing on: (1) using new technologies including internet-of-things-based sensors, uncrewed vehicles, and remote-sensing approaches for data collection to inform groundwater-surface water interactions at large scales, (2) seeking approaches to upscale site-specific findings to better inform management, and (3) continuing the movement towards multi-disciplinary investigations to better inform the understanding of groundwater-surface water interactions and processes that will enable better management outcomes.

Journal of Hydrology↗
USGS2021

New faunal records from a World Heritage Site in danger: Rennell Island, Solomon Islands

Remote oceanic islands have high potential to harbor unique fauna and flora, but opportunities to conduct in-depth biotic surveys are often limited. Furthermore, underrepresentation of existing biodiversity in the literature has the potential to detract from conservation planning and action. Between 18 and 29 October 2018, we surveyed the terrestrial vertebrates of East Rennell, a UNESCO World Heritage Site in Solomon Islands. We documented 56 species, including 15 squamates, 13 mammals, and 38 birds, and present four new vertebrate records for the island: Stephan's emerald dove ( Chalcophaps stephani ), Maluku myotis ( Myotis moluccarum ), littoral skink ( Emoia atrocostata ) and brahminy blindsnake ( Indotyphlops braminus ). East Rennell was designated a World Heritage site for its significant on-going ecological and biological processes, and importance for the study of island biogeography. The new records presented here provide evidence that continued field studies combined with DNA analysis will continue to uncover even greater endemic biodiversity. Rennell is currently experiencing major habitat destruction in parts of the island that are not under World Heritage protection, and we anticipate collateral damage will likely extend into protected areas. Our survey also underscores the incredible vertebrate biodiversity that stands to be lost unless conservation actions and local community needs are intertwined to promote beneficial outcomes on both fronts.

Pacific Science↗
USGS2021

Fluvial Egg Drift Simulator (FluEgg) user’s manual

The Fluvial Egg Drift Simulator (FluEgg) was developed to simulate the transport and dispersion of invasive carp eggs and larvae in a river. FluEgg currently (2020) supports modeling of bighead carp ( Hypophthalmichthys nobilis ), silver carp ( H. molitrix ), and grass carp ( Ctenopharyngodon idella ), with the planned addition of black carp ( Mylopharyngodon piceus ) once developmental data are available. FluEgg integrates the biological development of invasive carp eggs and larvae with a particle transport model that simulates the advection and dispersion of the eggs and larvae based on user-supplied one-dimensional hydraulic conditions. FluEgg can be used to evaluate the hydrodynamic suitability of a river for invasive carp spawning, to inform sampling and monitoring efforts, and to identify the most likely spawning areas of captured eggs or larvae.

Open-File Report↗