USGS Science⌕ Search

SEARCH · USGS Science

Results for “Coral Reefs”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19Linked to original sources
USGS2025

Coral restoration can drive rapid increases in reef accretion potential

Coral-reef degradation is disrupting the balance between reef accretion and erosion and threatening the persistence of essential coral-reef habitats. In south Florida, most reefs are already net eroding, and without intervention, valuable ecosystem services may be lost. Coral restoration holds the potential to reverse those trends; however, typical restoration monitoring does not adequately capture key geo-ecological functions. We addressed this knowledge gap using carbonate budgets and Structure-from-Motion models to evaluate the impact of coral restoration on reef-accretion potential and structural complexity at eight offshore and three inshore coral reefs in the Lower Florida Keys. Within 2–6 years following outplanting, restoration of rapidly growing A. cervicornis populations increased reef-accretion potential to 2.8 mm y − 1 and drove significant increases in structural complexity. There was no measurable impact of restoring slower-growing, massive corals on reef-accretion potential inshore; however, whereas the severe 2023 coral-bleaching event immediately following our study caused near-complete mortality of A. cervicornis , 59% of massive corals survived, highlighting potential trade-offs between coral growth and survival on future restoration efficacy. We conclude that although restoration can produce rapid, small-scale increases in reef-accretion potential, there remain important uncertainties about how and whether ecosystem-scale benefits of restoration on important geo-ecological reef functions can persist long term.

south Florida↗
USGS2025

Pathological drivers of coral diseases across the Arabian Peninsula

Increasing trends of coral mortality are a challenge to coral reef management worldwide, and a need exists to identify the causes and pathways involved. Pathology is useful to help decipher potential causes of mortality in animals, because it illuminates agents associated with lesions and gives insights on the nature of how a host responds to said agents. To better understand the nature of threats facing corals in the Arabian Peninsula, we performed gross and microscopic pathology on corals from Saudi Arabia, Qatar, and the United Arab Emirates. Among 321 coral fragments examined from 21 genera, tissue loss was the most common lesion seen in 31% of samples, reflecting its widespread presence on reefs from the Arabian Peninsula. Histologically, 68% of lesions exhibited necrosis, predominantly in the basal body wall and surface body wall. Endolithic filamentous microalgae and sponges, originating from the skeleton, were associated with 57% and 39% of lesions, respectively, and were often linked to necrosis and hyaline membrane formation. Cell-associated microbial aggregates and coccidia were detected mainly in Acropora, Pocillopora , and Porites but were not associated with adverse host response. Notably, 69–100% of fragments showing lesions were female likely reflecting the temporal reproductive life history of corals in the region. Our findings highlight endolithic organisms as major contributors to coral tissue degradation in the Arabian Peninsula. Future studies might focus on drivers of endolithic microalgal and sponge dynamics in the region and their role in coral reef health.

Coral Reefs↗
USGS1995

Reef fishes of the Florida Keys

The Florida Keys are a chain of islands extending 320 km (199 mi) along the southern edge of the Florida Plateau from Biscayne Bay to the Dry Tortugas (101 km [63 mi] west of Key West). The Florida Reef Tract, a band of living coral reefs paralleling the Keys, extends from Fowey Rocks to the Marquesas and includes about 130 km (81 mi) of bank reefs and 6,000 patch reefs. For convenience, the Keys can be divided into the upper, middle, and lower Keys (Fig. 1). The environmental and economic importance of the Florida Keys is indicated by the many protected or regulated areas, which include several national wildlife refuges, national parks, marine sanctuaries, and state-protected areas (Fig. 1). Because many recreational and commercial activities occur in nearshore habitats, these areas have high potential for environmental damage. Relatively high rates of human population increase (28%-44%) are predicted over the next 20 years in some parts of the Keys; Monroe County, which includes all of the Keys, had a population growth of 160% during the past 40 years. Human activities associated with increased population growth may well ultimately disrupt the Florida Keys marine ecosystem and damage the area's overall economy. In recognition of this possibility, the Florida Keys National Marine Sanctuary was designated in 1990 under the Marine Protection, Research, and Sanctuaries Act, U.S. Public Law 101-605. The sanctuary includes 9,515 km 2 (3,673 mi 2 ) of coastal waters around the Florida Keys. The Sanctuaries and Reserves Division of the National Oceanic and Atmospheric Administration was charged with developing a comprehensive management plan and regulations to protect sanctuary resources (NOAA 1995). We focus on the current status of Florida Keys reef fishes and areas where research is needed immediately.

Florida↗
USGS2009

High diversity and abundance of scleractinian corals growing on and near mangrove prop roots, St. John, US Virgin Islands

A narrow zone of red mangroves fringes the shorelines of four small bays in Hurricane Hole, within Virgin Islands Coral Reef National Monument (VICRNM) on St. John. In two of these bays, Otter Creek and Water Creek, a particularly high abundance and diversity of corals are growing directly on or near the prop roots (Fig. 1 a,b,c). To date, 28 coral species have been found: Stephanocoenia intersepta , Agaricia sp., Agaricia agaricites , Siderastrea siderea , S. radians , Porites porites , P. astreoides , P. furcata , P. divaricata , Favia fragum , Diploria strigosa , D. labyrinthiformis , D. clivosa , Manicina areolata , Colpophyllia natans , C. amaranthus , Montastraea annularis , M. faveolata , M. franksi , M. cavernosa , Oculina diffusa , Meandrina meandrites , Dendrogyra cylindrus , Scolymia cubensis , Mycetophyllia sp., Eusmilia fastigiata , Cladocora arbuscula , and Tubastrea coccinea . The size of many of the colonies, including some M. faveolata and C. natans colonies over 1 m across (Fig. 1 b), indicate that they survived the 2005/2006 bleaching and disease event that caused losses of over 60% of the coral cover on St. John reefs (Rogers et al. 2008 ). Shading by the mangroves possibly reduced the thermal and photic stress on these corals. The coral diversity in these mangroves may be higher than for other Caribbean mangrove systems. Few published papers include data on corals in these habitats. Two comprehensive reviews of the biology of mangroves make no reference to corals on or near prop roots (Kathiresan and Bingham 2001 ; Nagelkerken et al. 2008 ). The number of corals in Hurricane Hole, particularly the new recruits on the prop roots (Fig. 1 c), may have increased since the establishment of the VICRNM in 2001, as boaters are not permitted to overnight in these bays or to tie their boats to the mangrove trees as was done in the past.

St. John↗
USGS1935

Shore benches on the island of Oahu, Hawaii

The Island of Oahu is third in size in the Hawaiian group and lies in the mid-Pacific about 2,100 miles southwest of San Francisco. Honolulu, the capital and principal port of this group, is on Oahu. Two dissected volcanic domes, the Waianae Range (4,035 feet high) and the Koolau Range (3,105 feet high) make up the island. They are surrounded by a nearly continuous coastal plain, in places reaching nearly 6 miles in width and consisting of emerged Pleistocene reef limestone and terrigenous deposits. A living coral reef fringes all of the island except the east and west ends.

Hawaii↗
USGS2025

Discovery of late Holocene-aged Acropora palmata reefs in Dry Tortugas National Park, Florida, USA: The past as a key to the future?

Emblematic of global coral-reef ecosystem decline, the coral ecosystem-engineer Acropora palmata is now rare throughout much of the western Atlantic. Understanding when and where this foundation species occurred during the past can provide information about the environmental limits defining its distribution through space and time. In this paper, the present, historical and newly dated geological records of A. palmata are compared to reveal novel insights into the environmental constraints on its occurrence in Dry Tortugas National Park, a subtropical reef system at the south-western terminus of the Florida reef tract. Although past geological investigation found little evidence of the species in the park, a single, moderately sized A. palmata reef existed throughout historical times (1881 Common Era [CE] to present day; ‘historical population’, termed herein). Over the last 140 years, repeated population declines occurred with little to no recovery, culminating in the extirpation of A. palmata from the area during the 2023–2024 CE global coral bleaching event. Reported here for the first time is a significant record of Late Holocene A. palmata populations that existed from ca 4500 to 375 years before present (‘Late Holocene population,’ termed herein) in three broadly distributed areas of the shallow Dry Tortugas platform. This discovery challenges previous assumptions regarding the species' limited contribution to reef development in the area by providing data that extend the known spatial and stratigraphic extent of Holocene populations in this location. It is posited that, although the Late Holocene climate largely suppressed regional reef development, the new records provide evidence for centennial-scale periods of more favourable and stable climate that allowed for short-term expansions of A. palmata populations in the Dry Tortugas. In conclusion, the species' prospects for future success in this and other subtropical location

Florida↗
USGS2010

The Sargassum Frogfish ( Histrio histrio Linnaeus) observed in mangroves in St. John, US Virgin Islands

The Sargassum Frogfish ( Histrio histrio ), the only pelagic member of the frogfish family Antennariidae, is considered an obligate associate of floating mats of the brown algae Sargassum natans and S. fluitans (Adams 1960; Dooley 1972; Pietsch and Grobecker 1987). Between February and April 2010, 20 of these fish were observed in three mangrove-fringed bays in Virgin Islands Coral Reef National Monument, St. John, US Virgin Islands. All of them were clinging to clumps of the red alga Acanthophora spicifera growing on the submerged prop roots of red mangrove trees ( Rhizophora mangle ) distributed along an estimated total of 2,160 mof shoreline (Fig. 1). All of the fish were at a depth of less than 0.5 meters. Two individuals were seen on one prop root, but the other 18 were solitary. Their estimated standard lengths ranged from about 20 to 100 mm. Littler and Littler (2000, p. 295) published a photograph of one individual in blades of the green alga Ulva lactuca growing on a prop root in Belize. This is the first report of the Sargassum Frogfish living in association with attached algae.

Virgin Islands Coral Reef National Monument;St. Jo↗
USGS2025

Reduced Atlantic reef growth past 2 °C warming amplifies sea-level impacts

Coral reefs form complex physical structures that can help to mitigate coastal flooding risk 1,2 . This function will be reduced by sea-level rise (SLR) and impaired reef growth caused by climate change and local anthropogenic stressors 3 . Water depths above reef surfaces are projected to increase as a result, but the magnitudes and timescales of this increase are poorly constrained, which limits modelling of coastal vulnerability 4,5 . Here we analyse fossil reef deposits to constrain links between reef ecology and growth potential across more than 400 tropical western Atlantic sites, and assess the magnitudes of resultant above-reef increases in water depth through to 2100 under various shared socioeconomic pathway (SSP) emission scenarios. Our analysis predicts that more than 70% of tropical western Atlantic reefs will transition into net erosional states by 2040, but that if warming exceeds 2 °C (SSP2–4.5 and higher), nearly all reefs (at least 99%) will be eroding by 2100. The divergent trajectories of reef growth and SLR will thus magnify the effects of SLR; increases in water depth of around 0.3–0.5 m above the present are projected under all warming scenarios by 2060, but depth increases of 0.7–1.2 m are predicted by 2100 under scenarios in which warming surpasses 2 °C. This would increase the risk of flooding along vulnerable reef-fronted coasts and modify nearshore hydrodynamics and ecosystems. Reef restoration offers one pathway back to higher reef growth 6,7 , but would dampen the effects of SLR in 2100 only by around 0.3–0.4 m, and only when combined with aggressive climate mitigation.

Florida↗
USGS2017

Wave dynamics and flooding on low-lying tropical reef-lined coasts

Many tropical islands and coasts are lined with coral reefs. These reefs are host to valuable ecosystems that support abundant marine species and provide resources for fisheries and recreation. As a flood defense, reefs protect coastlines from coastal storm damage and flooding by reducing the majority of incident wave energy. However, during storm and large swell conditions, coastal wave-driven flooding and overwash still occur due to high water levels, (infra) gravity waves, and/or low-frequency wave resonance. The wave and flooding effects cause erosion, damage to infrastructure, agricultural crops, and salinization of precious drinking water supplies. These impacts, which are likely to increase due to climate change and ongoing development on the islands, may cause many low-lying tropical islands and coastal areas to become uninhabitable before the end of the century. This paper investigates aspects of wave dynamics for the case of a small island in the tropical Pacific Ocean, shows projections of flooding under climate change scenarios, and outlines approaches to generalize the results to other islands, including mitigation options.

Conference Paper↗
USGS2020

Localized outbreaks of coral disease on Arabian reefs are linked to extreme temperatures and environmental stressors

The Arabian Peninsula borders the hottest reefs in the world, and corals living in these extreme environments can provide insight into the effects of warming on coral health and disease. Here, we examined coral reef health at 17 sites across three regions along the northeastern Arabian Peninsula (Persian Gulf, Strait of Hormuz and Oman Sea) representing a gradient of environmental conditions. The Persian Gulf has extreme seasonal fluctuations in temperature and chronic hypersalinity, whereas the other two regions experience more moderate conditions. Field surveys identified 13 coral diseases including tissue loss diseases of unknown etiology (white syndromes) in Porites, Platygyra , Dipsastraea , Cyphastrea, Acropora and Goniopora ; growth anomalies in Porites, Platygyra and Dipsastraea ; black band disease in Platygyra , Dipsastraea , Acropora, Echinopora and Pavona ; bleached patches in Porites and Goniopora and a disease unique to this region, yellow-banded tissue loss in Porites . The most widespread diseases were Platygyra growth anomalies (52.9% of all surveys), Acropora white syndrome (47.1%) and Porites bleached patches (35.3%). We found a number of diseases not yet reported in this region and found differential disease susceptibility among coral taxa. Disease prevalence was higher on reefs within the Persian Gulf (avg. 2.05%) as compared to reefs within the Strait of Hormuz (0.46%) or Oman Sea (0.25%). A high number of localized disease outbreaks (8 of 17 sites) were found, especially within the Persian Gulf (5 of 8 sites). Across all regions, the majority of variation in disease prevalence (82.2%) was associated with the extreme temperature range experienced by these corals combined with measures of organic pollution and proximity to shore. Thermal stress is known to drive a number of coral diseases, and thus, this region provides a platform to study disease at the edge of corals’ thermal range.

Gulf of Oman, Persian Gulf, Strait of Hormuz↗
USGS1993

A matter of scale: damage from Hurricane Hugo (1989) to U.S. Virgin Islands reefs at the colony, community and whole reef level

Studies at Buck Island Reef National Monument (St. Croix) and Virgin Islands National Park (St. John) by scientists in the U.S. National Park Service Coral Reef Assessment Program re- vealed the effects of Humcane Hugo on individual coral species, community parameters, and overall reef structure. Effects of the storm varied with depth, coral species, location relative to the storm path, character of the pre-storm communities, and ecological history. Live coral cover, initially less than 30% at all sites, dropped by 40 to 73%. Cover by the dominant species Montastrea annularis de- clined about 35% on the St. John reefs. At Buck Island, Acropora palmata cover, already reduced from 85% to 5% by white band disease and storms, fell to 0.8% after Hugo. Some areas on the south side of Buck Island were reduced to rubble pave- ment while other areas escaped serious damage. Data from cores at Buck Island reveal the influence of wave energy and storm frequency on overall reef character. Patchiness and variation in the responses of different species, zones, and entire reefs to the storm suggest that assessment of long-term trends in reef structure and composition requires analysis of changes at permanent study sites distributed over large areas.

Conference Paper↗
USGS2022

MIS 5e sea-level history along the Pacific coast of North America

The primary last interglacial, marine isotope substage (MIS) 5e records on the Pacific coast of North America, from Washington (USA) to Baja California Sur (Mexico), are found in the deposits of erosional marine terraces. Warmer coasts along the southern Golfo de California host both erosional marine terraces and constructional coral reef terraces. Because the northern part of the region is tectonically active, MIS 5e terrace elevations vary considerably, from a few meters above sea level to as much as 70 m above sea level. The primary paleo-sea-level indicator is the shoreline angle, the junction of the wave-cut platform with the former sea cliff, which forms very close to mean sea level. Most areas on the Pacific coast of North America have experienced uplift since MIS 5e time, but the rate of uplift varies substantially as a function of tectonic setting. Chronology in most places is based on uranium-series ages of the solitary coral Balanophyllia elegans (erosional terraces) or the colonial corals Porites and Pocillopora (constructional reefs). In areas lacking corals, correlation to MIS 5e often can be accomplished using amino acid ratios of fossil mollusks, compared to similar ratios in mollusks that also host dated corals. Uranium-series (U-series) analyses of corals that have experienced largely closed-system histories range from ∼124 to ∼118 ka, in good agreement with ages from MIS 5e reef terraces elsewhere in the world. There is no geomorphic, stratigraphic, or geochronological evidence for more than one high-sea stand during MIS 5e on the Pacific coast of North America. However, in areas of low uplift rate, the outer parts of MIS 5e terraces apparently were re-occupied by the high-sea stand at ∼100 ka (MIS 5c), evident from mixes of coral ages and mixes of molluscan faunas with differing thermal aspects. This sequence of events took place because glacial isostatic adjustment processes acting on North America resulted in regional high-sea stands at ∼100 and ∼80 ka that were higher than is the case in far-field regions, distant from large continental ice sheets. During MIS 5e time, sea surface temperatures (SSTs) off the Pacific coast of North America were higher than is the case at present, evident from extralimital southern species of mollusks found in dated deposits. Apparently, no wholesale shifts in faunal provinces took place, but in MIS 5e time, some species of bivalves and gastropods lived hundreds of kilometers north of their present northern limits, in good agreement with SST estimates derived from foraminiferal records and alkenone-based reconstructions in deep-sea cores. Because many areas of the Pacific coast of North America have been active tectonically for much or all of the Quaternary, many earlier interglacial periods are recorded as uplifted, higher-elevation terraces. In addition, from southern Oregon to northern Baja California, there are U-series-dated corals from marine terraces that formed at ∼80 ka, during MIS 5a. In contrast to MIS 5e, these terrace deposits host molluscan faunas that contain extralimital northern species, indicating cooler SST at the end of MIS 5. Here I present a review and standardized database of MIS 5e sea-level indicators along the Pacific coast of North America and the corresponding dated samples. The database is available in Muhs et al. (2021b; https://doi.org/10.5281/zenodo.5903285 ).

Earth System Science Data↗
USGS2009

Gulf of Mexico Deep-Sea Coral Ecosystem Studies, 2008-2011

Most people are familiar with tropical coral reefs, located in warm, well-illuminated, shallow waters. However, corals also exist hundreds and even thousands of meters below the ocean surface, where it is cold and completely dark. These deep-sea corals, also known as cold-water corals, have become a topic of interest due to conservation concerns over the impacts of trawling, exploration for oil and gas, and climate change. Although the existence of these corals has been known since the 1800s, our understanding of their distribution, ecology, and biology is limited due to the technical difficulties of conducting deep-sea research. DISCOVRE (DIversity, Systematics, and COnnectivity of Vulnerable Reef Ecosystems) is a new U.S. Geological Survey (USGS) program focused on deep-water coral ecosystems in the Gulf of Mexico. This integrated, multidisciplinary, international effort investigates a variety of topics related to unique and fragile deep-sea coral ecosystems from the microscopic level to the ecosystem level, including components of microbiology, population genetics, paleoecology, food webs, taxonomy, community ecology, physical oceanography, and mapping.

Fact Sheet↗
USGS1994

Fate and pathways of injection-well effluent in the Florida Keys

Twenty-four wells (21 locations) were core drilled into the limestone beneath the Keys, reef tract, and outer reefs to determine if sewage effluents injected in Class V wells onshore are reaching offshore reef areas via underground flow. These wells were fitted with PVC casings and well screens and were sampled every three months for a period of one year. Analyses showed consistent hypersalinity in most wells and a marked increase in nitrogen (as ammonia) in offshore ground water. Other forms of nitrogen (NO 2 and NO 3 ) and phosphorous were not particularly elevated in offshore ground water but were above the levels found in surface marine water. The highest levels of nitrogen (NO 2 and NO 3 ) and phosphorous were in shallow onshore ground waters. Sources for the nutrients in the shallow onshore ground water consist of septic tanks and cesspools (@ 24,000 and 5,000 in the Florida Keys, respectively), agricultural fertilizers, and natural vegetation. Ammonia concentrations were low in shallow ground waters beneath the Florida Keys, probably because of oxidizing conditions. Tidal pumping is particularly active, especially nearshore. Hydraulic heads sufficient to elevate well water as much as 7 cm above sea level during falling tides were detected in all nearshore wells. During rising tides, the situation was reversed and water flowed into the wells. Tidal pumping implies considerable water movement both in and out of the upper few meters of limestone. Tidal pumping is a likely mechanism for mixing and transferring nutrient-rich ground water into the overlying marine waters. Although tidal pumping should cause rather complete mixing and dilution of any freshwater-based effluents entering the limestone via the more than 600 disposal wells in the Florida Keys, the ground waters in the 30- to 40-ft-depth range (9-12 m) nevertheless remained slightly hypersaline relative to sea water throughout the year. Fecal coliform and fecal streptococcal bacteria were associated with three Lower Keys offshore wells and two shallow onshore wells at Key Largo. On occasions, these bacteria were detected farther offshore, once in a well 4 miles off Key Largo. The bacterial analyses for Key Largo (both onshore and offshore) are supported by two independent bacteriological researchers using more sophisticated methods than the standard 100-ml membrane-filter method used in this study. Fecal bacteria can serve as tracers; thus, we conclude their presence is possible evidence for offshore transport of ground waters originating on Key Largo. Elevated nutrients (ammonia) and slightly elevated dissolved total phosphorous in offshore ground waters, however, cannot be tied to onshore sources with existing data. Rock analyses of material from our cores do not prove or disprove the hypothesis that limestone beneath the Keys or reef tract is serving as a sink for phosphorus or other nutrients. The data, however, do not rule out phosphorus uptake by limestone adjacent to disposal sources. For the purposes of this study, monitoring wells were not positioned sufficiently close to injection wells to determine if uptake of phosphorous is taking place. Ground waters were found to contain more dissolved solids than could be accounted for if hypersalinity resulted from simple evaporation of sea water. These data indicate that ground waters in the vicinity of our wells are dissolving solids from the rock rather than precipitating material within the rock framework; however, as mentioned above, our wells were not positioned sufficiently close to disposal wells to determine if localized uptake is occurring. Examination of rock cores from these wells revealed a general distribution of reef- and grainstone-facies belts. The Upper and Middle Keys are composed of a thin coral reef facies that extends only a few hundred feet seaward of the Keys. Reef facies give way to mudstone facies within a few yards of shore on the Florida Bay side of the Keys. On the seaward side of the Keys, beneath Hawk Channel and White Bank, the Pleistocene limestone is a mixed grainstone, packstone, and wackstone facies. Corals are rare or absent. The Pleistocene limestone beneath the outer reefs 4 to 5 miles offshore, however, consists of reef facies with the same coral fauna as that found on Key Largo. This pattern of two major reef-facies belts separated by a 2- to 4-mile-wide belt of grainstone facies may have as yet undetermined effects on groundwater circulation beneath the Florida reef tract. Grainstone is approximately an order of magnitude less permeable than the coralline Key Largo Limestone facies. The Q3 surface, a major subsurface unconformity thought to form an effective confining zone elsewhere in south Florida, was not detected in wells drilled more than 1 mile from shore. This unconformity, however, was detected in all wells drilled on or near the Keys. What was found to be a more effective and widespread confining layer is the Holocene sediment deposited on the Pleistocene limestone during the past 6,000 to 7,000 years. These relatively impermeable sediments are extensive, forming a belt up to 5 miles wide beginning about 0.5 mile offshore. Holocene sediments generally consist of low-permeability lime mud just above the Pleistocene surface, overlain by more permeable carbonate sands and reefs. Leakage of ground water by tidal pumping is not likely to occur through lime-mud-dominated areas such as Hawk Channel but is likely to occur through isolated porous and permeable Holocene reefs situated on Pleistocene limestone highs, and in places where Holocene sediment does not cover the limestone bedrock. Leakage is therefore limited to 1) a shallow-water 0.5-mile-wide nearshore belt of exposed Key Largo Limestone, 2) Holocene patch reefs, which grow on mud-free topographic rock highs, and 3) along the seaward side of the outermost reef in 35 to 65 ft (10-20 m) of water, where Holocene reef and sediment accumulations are thin or absent. This study did not address direct measurements of lateral groundwater movement or a hydrologic mechanism for transporting hypersaline ground water away from the Florida Keys. More recent work, however (Halley et al., 1994), shows that sea level in Florida Bay is higher than on the Atlantic side of the Keys more than 50% of the time. Higher sea level on the bay side of the Keys provides a potential for groundwater flow toward the Atlantic most of the time. Use of tracers (dyes or harmless bacteriological tracers) injected into the center of tightly spaced clusters of monitoring wells is a simple way to ascertain the net direction and rate of groundwater movement. Knowing the direction and rate of groundwater movement is needed for prediction and modeling efforts in the future

Florida↗
USGS2024

Hurricane wave energy dissipation and wave-driven currents over a fringing reef

In 2018, two successive tropical cyclones, Hurricane Hector and Hurricane Lane, generated waves that impacted the Hawaiian Islands. This study investigates wave breaking over a broad fringing reef and aims to quantify the magnitudes and length scales of the corresponding wave-driven circulation using detailed field observations and numerical models corresponding to these wave events. Detailed wave and current measurements were collected across a 1200-m wide cross-reef transect off the coral reef-lined south coast of Moloka’i, Hawai’i. High-resolution numerical model grids were developed to resolve reef features and the coupled Delft3D-SWAN modeling system was applied to simulate spectral wave transformation and wave-driven currents for these two energetic ocean wave events generated by distant passing hurricanes. The results indicate that the wave-driven circulation is generally weak, with current speeds typically less than 0.15 m/s for the wave conditions generated by Hurricane Lane, with significant wave heights up to 1.9 m. Higher energy dissipation rates from larger waves up to 2.5 m breaking during Hurricane Hector resulted in stronger observed currents up to approximately 0.3 m/s. However, the model results show that these currents are confined to the wave-breaking region over the upper fore reef in a narrow (100–300 m) region near the reef crest, and weaker flows of less than 0.1 m/s are generated over the shallow and wide reef flat. Wave heights across the reef flat are less than 0.5 m and are controlled by the tidal water levels. The coral reef structures therefore provide significant protection for the coastline even during large wave and variable sea level conditions. Climate change is likely to increase sea level and storm intensity, the combination of which will influence wave transmission over fringing reefs that may degrade habitat, fueling the need for further research on changing conditions on coral reef-lined coasts.

Hawaii↗
USGS2023

Stony coral tissue loss disease accelerated shifts in coral composition and declines in reef accretion potential in the Florida Keys

Outbreaks of coral disease have been a dominant force shaping western Atlantic coral-reef assemblages since the late 1970s. Stony coral tissue loss disease (SCTLD) is nonetheless having an unprecedented impact in the region. Whereas numerous studies over the last decade have worked to characterize this novel pathogen and its impacts on coral populations, few have quantified its functional effects on reef ecosystems. Of particular importance is how SCTLD may be impacting the essential reef-accretion process and the myriad ecosystem services it supports. Here, we evaluated the impact of SCTLD on reef-accretion potential by estimating carbonate budgets and taxon-level carbonate production at 43 sites throughout the Florida Keys from 2016−2022. Average regional reef-accretion potential declined from an already low, but positive rate of 0.30 ± 0.16 mm y -1 (mean ± standard error) in 2016 before the disease was first observed, to a state of accretionary stasis (0.08 ± 0.12 mm y -1 ) by 2022. This 70% relative decline in reef-accretion potential was driven by the loss of reef-building corals, with significant decreases in carbonate production by massive taxa including Colpophyllia natans , Montastraea cavernosa , Pseudodiploria strigosa , Orbicella spp., and Siderastrea siderea , and increasing contributions from less susceptible, weedy taxa including Millepora spp., Agaricia spp., and Porites astreoides . In general, changes in taxon-level carbonate production following the SCTLD outbreak mirror long-term shifts in reef assemblages in response to previous stressors. One striking exception, however, is S. siderea , which had become increasingly dominant in recent decades, but declined significantly in response to SCTLD. Overall, by further decimating the already depauperate reef-building coral populations in the Florida Keys, SCTLD has caused a functionally significant shift in the composition of Florida’s coral-reef assemblages and accelerated the loss of regional reef-building capacity. The dire impacts of the disease in south Florida may serve as an early warning that the persistence of the invaluable ecological and socioeconomic functions coral reefs provide will be increasingly threatened throughout the western Atlantic in the aftermath of SCTLD.

Florida↗
USGS2012

Abiotic and biotic controls of cryptobenthic fish assemblages across a Caribbean seascape

The majority of fish studies on coral reefs consider only non-cryptic species and, despite their functional importance, data on cryptic species are scarce. This study investigates inter-habitat variation in Caribbean cryptobenthic fishes by re-analysing a comprehensive data set from 58 rotenone stations around Buck Island, U.S. Virgin Islands. Boosted regression trees were used to associate the density and diversity of non-piscivorous cryptobenthic fishes, both in the entire data set and on reef habitats alone, with 14 abiotic and biotic variables. The study also models the habitat requirements of the three commonest species. Dead coral cover was the first or second most important variable in six of the eight models constructed. For example, within the entire data set, the number of species and total fish density increased approximately linearly with increasing dead coral cover. Dead coral was also important in multivariate analyses that discriminated 10 assemblages within the entire data set. On reef habitats, the number of species and total fish density increased dramatically when dead coral exceeded ~55 %. Live coral cover was typically less important for explaining variance in fish assemblages than dead coral, but live corals were important for maintaining high fish diversity. Coral species favoured by cryptobenthic species may be particularly susceptible to mortality, but dead coral may also provide abundant food and shelter for many fishes. Piscivore density was a key variable in the final models, but typically increased with increasing cryptobenthic fish diversity and abundance, suggesting both groups of fishes are responding to the same habitat variables. The density of territorial damselfishes reduced the number of cryptobenthic fish species on reef habitats. Finally, habitats delineated by standard remote sensing techniques supported distinct cryptobenthic fish assemblages, suggesting that such maps can be used as surrogates of general patterns of cryptic fish biodiversity in conservation planning.

Coral Reefs↗
USGS2026

Evaluation of benthic habitat change within the national historic sites of Hawaiʻi’s Kona Coast

Executive Summary Coral bleaching events have become increasingly common across the Hawaiian Archipelago since 1996 because of more frequent and intense marine heatwaves. The most significant bleaching event to date occurred from 2014 to 2015, which resulted in catastrophic state-wide coral loss. Bleaching events with less severe effects also occurred in 1996 and 2019. To understand the long-term effects of repeated bleaching events, along with other anthropogenic factors such as water quality, storms, sewage runoff, and coastal development, on coral reefs on the Kona Coast of the Island of Hawaiʻi, the U.S. Geological Survey, in collaboration with the National Park Service, collected underwater imagery in the early 2000s (baseline survey) and again in 2022 (resurvey). These images were captured within and adjacent to the National Historic Parks (NHP) and National Historic Sites (NHS) of Kaloko-Honokōhau NHP (KAHO), Puʻuhonua o Hōnaunau NHP (PUHO), and Puʻukohola Heiau NHS (PUHE). Imagery was classified for live coral cover and dominant type (four coral types, rubble, macroalgae, and two bottom substrate types). Change of percent live coral cover was determined for all sites. Change of coral and non-coral dominant types were calculated by aggregating classifications for each park into coral and non-coral. Net coral cover decreased between the baseline and resurvey period across all three parks, though PUHE exhibited the greatest loss of live coral cover. Across all three parks, the occurrence of lower coral cover classes (0–20 percent) increased and higher coral cover classes (greater than 50 percent) decreased. Furthermore, the total occurrence of non-coral dominant type classifications (rubble, macroalgae, sand, and volcanic pavement) increased by approximately 25 percent across all three parks, with PUHE experiencing a nearly 90-percent increase in the occurrence of non-coral types. There was little to no effect of water depth on change of live coral cover, indicating that marine heatwave driven bleaching events and additional anthropogenic influences affected the entire reef across all water depths from the lower fore reef to the reef flat. Because coral loss was more severe at PUHE and PUHO than KAHO, creating a monitoring framework that utilizes periodic underwater camera surveys and fixed diver transects by the National Park Service would contextualize the periodic spatial surveys to the fixed transects that have greater temporal resolution. Similarly, increased frequency of spatial surveys would allow for the National Park Service to continue monitoring changes to critical nearshore habitats and marine resources relevant to National Park jurisdiction.

Hawaii↗