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An integrative paradigm for building causal knowledge

A core aspiration of the ecological sciences is to determine how systems work, which implies the challenge of developing a causal understanding. Causal inference has long been approached from a statistical perspective, which can be limited and restrictive for a variety of reasons. Ecologists and other natural scientists have historically pursued mechanistic knowledge as an alternative approach to causal understanding, though without explicit reference to the requirements of causal statistics. In this paper, I describe the premises of an expanded paradigm for causal studies, the Integrative Causal Investigation Paradigm, that subsumes causal statistics and mechanistic investigation into a multi-evidence approach. This paradigm is distinct from the one articulated by causal statistics in that it (1) focuses its attention on the long-term goal of building causal knowledge across multiple studies and (2) recognizes the essential role of mechanistic investigations in establishing a causal understanding. The Integrative Paradigm, consequentially, proposes that there are multiple methodological routes to building causal knowledge and thus represents a pluralistic perspective. This paper begins by describing the crux of the problem faced by causal statistics. To understand this problem, it should be recognized that the word causal has multiple meanings and a variety of evidential standards. An expanded vocabulary is developed so as to reduce ambiguities and clarify critical issues. I further show by example that there is an important ingredient typically omitted from consideration in causal statistics, which is the known information related to the mechanisms underlying relationships being evaluated. To address this issue, I describe a procedure, Causal Knowledge Analysis, that involves an evaluation and compilation of existing evidence indicative of causal content and the features of mechanisms. Causal Knowledge Analysis is applied to three example situations to illustrate the process and its potential for contributing to the development of causal knowledge. The implications of adopting the proposed paradigm and associated procedures are discussed and include the potential for advancing ecology, the potential for clarifying causal methodology, and the potential for contributing to predictive forecasting.

Ecological Monographs

Development of small uncrewed aerial systems for multi-instrument geophysical data acquisition in active geothermal systems

Small Uncrewed Aerial Systems (sUAS) serve as critical platforms for geophysical data collection at an intermediate scale between lower resolution, regional datasets collected via crewed aerial surveys, and high resolution, but spatially sparse sampling of ground-based data collection methods. Advances in sensor design and sUAS capabilities have led to rapid advances in the amount and type of geophysical data that can be acquired using sUAS-based survey designs (Gavazzi et al., 2019). Here we showcase the utility of a single sUAS (the Matrice 600 Pro and accompanying sensor package) that collects magnetic, thermal infra-red (TIR) and gas (CO2, SO2, H2S, water vapor) data for use in geothermal resource exploration and monitoring, with case studies in eastern California and Iceland. The work highlights the flexibility of modern sUAS systems for single-team acquisition of multiple independent but coupled geophysical data which allow for a multidisciplinary approach to geothermal systems research. We summarize the workflows involved in collecting each dataset as well as several common issues encountered both during data collection and data processing.

Conference Paper

An evaluation of the global 1-km AVHRR land dataset

This paper summarizes the steps taken in the generation of the global 1-km AVHRR land dataset, and it documents an evaluation of the data product with respect to the original specifications and its usefulness in research and applications to date. The evaluation addresses data characterization, processing, compositing and handling issues. Examples of the main scientific outputs are presented and options for improved processing are outlined and prioritized. The dataset has made a significant contribution, and a strong recommendation is made for its reprocessing and continuation to produce a long-term record for global change research.

International Journal of Remote Sensing

Refinements to the Graves and Pitarka (2010) Broadband Ground Motion Simulation Method

This brief article describes refinements to the Graves and Pitarka (2010) broadband ground motion simulation methodology (GP2010 hereafter) that have been implemented in version 14.3 of the SCEC Broadband Platform (BBP). The updated version of our method on the current SCEC BBP is referred to as GP14.3. Our simulation technique is a hybrid approach that combines low-­‐frequency and high-­‐frequency motions computed with different methods into a single broadband response. The separate low-­‐ and high-­‐frequency components have traditionally been called “deterministic” and “stochastic”, respectively; however, this nomenclature is an oversimplification. In reality, the low-­‐frequency approach includes many stochastic elements, and likewise, the high-­‐frequency approach includes many deterministic elements (e.g., Pulido and Kubo, 2004; Hartzell et al., 2005; Liu et al., 2006; Frankel, 2009; Graves and Pitarka, 2010; Mai et al., 2010). While the traditional terminology will likely remain in use by the broader modeling community, in this paper we will refer to these using the generic terminology “low-­‐frequency” and “high-­‐ frequency” approaches. Furthermore, one of the primary goals in refining our methodology is to provide a smoother and more consistent transition between the low-­‐ and high-­‐ frequency calculations, with the ultimate objective being the development of a single unified modeling approach that can be applied over a broad frequency band. GP2010 was validated by modeling recorded strong motions from four California earthquakes. While the method performed well overall, several issues were identified including the tendency to over-­‐predict the level of longer period (2-­‐5 sec) motions and the effects of rupture directivity. The refinements incorporated in GP14.3 are aimed at addressing these issues with application to the simulation of earthquakes in Western US (WUS). These refinements include the addition of a deep weak zone (details in following section) to the rupture characterization and allowing perturbations in the correlation of rise time and rupture speed with the specified slip distribution. Additionally, we have extended the parameterization of GP14.3 so that it is also applicable for simulating Eastern North America (ENA) earthquakes. This work has been guided by the comprehensive set of validation studies described in Goulet and Abrahamson (2014) and Dreger et al. (2014). The GP14.3 method shows improved performance relative to GP2010, and we direct the interested reader to Dreger et al. (2014) for a detailed assessment of the current methodology. In this paper, we concentrate on describing the modifications in more detail, and also discussing additional refinements that are currently being developed.

California

The history of aggregate development in the Denver, CO area

At the start of the 20 th century Denver's population was 203,795. Most streets were unpaved. Buildings were constructed of wood frame or masonry. Transport was by horse-drawn-wagon or rail. Statewide, aggregate consumption was less than 0.25 metric tons per person per year. One hundred years later Denver had a population of 2,365,345. Today Denver is a major metropolitan area at the crossroads of two interstates, home to a new international airport, and in the process of expanding its light rail transit system. The skyline is punctuated with skyscrapers. The urban center is surrounded with edge cities. These changes required huge amounts of aggregate. Statewide, aggregate consumption increased 50 fold to over 13 metric tons per person per year. Denver has a large potential supply of aggregate, but sand and gravel quality decreases downstream from the mountain front and potential sources of crushed stone occur in areas prized for their scenic beauty. These issues, along with urban encroachment and citizen opposition, have complicated aggregate development and have paved a new path for future aggregate development including sustainable resource management and reclamation techniques.

Colorado

Vulnerability assessment of a port and harbor community to earthquake and tsunami hazards: Integrating technical expert and stakeholder input

Research suggests that the Pacific Northwest could experience catastrophic earthquakes and tsunamis in the near future, posing a significant threat to the numerous ports and harbors along the coast. A collaborative, multiagency initiative is underway to increase the resiliency of Pacific Northwest ports and harbors to these hazards, involving Oregon Sea Grant, Washington Sea Grant, the National Oceanic and Atmospheric Administration Coastal Services Center, and the U.S. Geological Survey Center for Science Policy. One element of this research, planning, and outreach initiative is a natural hazard mitigation and emergency preparedness planning process that combines technical expertise with local stakeholder values and perceptions. This paper summarizes and examines one component of the process, the vulnerability assessment methodology, used in the pilot port and harbor community of Yaquina River, Oregon, as a case study of assessing vulnerability at the local level. In this community, stakeholders were most concerned with potential life loss and other nonstructural vulnerability issues, such as inadequate hazard awareness, communication, and response logistics, rather than structural issues, such as damage to specific buildings or infrastructure.

Oregon

A model for the evaluation of environmental impact indicators for a sustainable maritime transportation systems

Maritime shipping is considered the most efficient, low-cost means for transporting large quantities of freight over significant distances. However, this process also causes negative environmental and societal impacts. Therefore, environmental sustainability is a pressing issue for maritime shipping management, given the interest in addressing important issues that affect the safety, security, and air and water quality as part of the efficient movement of freight throughout the coasts and waterways and associated port facilities worldwide. In-depth studies of maritime transportation systems (MTS) can be used to identify key environmental impact indicators within the transportation system. This paper develops a tool for decision making in complex environments; this tool will quantify and rank preferred environmental impact indicators within a MTS. Such a model will help decision-makers to achieve the goals of improved environmental sustainability. The model will also provide environmental policy-makers in the shipping industry with an analytical tool that can evaluate tradeoffs within the system and identify possible alternatives to mitigate detrimental effects on the environment.

Frontiers of Engineering Management

Critical ShakeCast lifeline users and their response protocols

ShakeCast is a US Geological Survey (USGS) software application that automatically retrieves ShakeMap shaking estimates and performs analyses using fragility functions for buildings and lifelines. The ShakeCast system aims to identify which facilities or lifeline segments are most likely impacted by an earthquake—and thus which ones should be prioritized for inspection and response—and sends notifications to responders in the minutes after an event. By focusing inspection efforts on the most damage-susceptible facilities in the severely shaken areas, ShakeCast can improve critical lifeline inspection prioritization and reduce response time in the aftermath of a significant earthquake. Overviews and technical specifications of the ShakeCast system and software have been presented at earlier conferences; here we discuss ShakeCast users and their response protocols to provide further insight into the use of the ShakeCast system. We focus on case histories of ShakeCast users who are responsible for monitoring and response for critical infrastructure. We emphasize the inventory, fragility, and notification issues pertinent to these users, their efforts in developing protocols for post-earthquake inspections, and response.

Conference Paper

7th U.S. / Japan Natural Resources (UJNR) Panel on Earthquake Research: Abstract volume and technical program

The U.S. / Japan Natural Resources (UJNR) Panel on Earthquake Research promotes advanced study toward a more fundamental understanding of the earthquake process and hazard estimation. The Panel promotes basic and applied research to improve our understanding of the causes and effects of earthquakes and to facilitate the transmission of research results to those who implement hazard reduction measures on both sides of the Pacific and around the world. Meetings are held every other year, and alternate between countries with short presentation on current research and local field trips being the highlights. The 5th Joint Panel meeting was held at Asilomar, California in October, 2004. The technical sessions featured reports on the September 28, 2004 Parkfield, California earthquake, progress on earthquake early warning and rapid post-event assessment technology, probabilistic earthquake forecasting and the newly discovered phenomenon of nonvolcanic tremor. The Panel visited the epicentral region of the M 6.0 Parkfield earthquake and viewed the surface ruptures along the San Andreas Fault. They also visited the San Andreas Fault Observatory at Depth (SAFOD), which had just completed the first phase of drilling into the fault. The 6th Joint Panel meeting was held in Tokushima, Japan in November, 2006. The meeting included very productive exchanges of information on approaches to systematic observation of earthquake processes. Sixty eight technical papers were presented during the meeting on a wide range of subjects, including interplate earthquakes in subduction zones, slow slip and nonvolcanic tremor, crustal deformation, recent earthquake activity and hazard mapping. Through our discussion, we reaffirmed the benefits of working together to achieve our common goal of reducing earthquake hazard, continued cooperation on issues involving densification of observation networks and the open exchange of data among scientific communities. We also reaffirmed the importance of making information public in a timely manner. The Panel visited sites along the east coast of Shikoku that were inundated by the tsunami caused by the 1946 Nankai earthquake where they heard from survivors of the disaster and saw new tsunami shelters and barriers. They also visited the Median Tectonic Line, a major onshore strike-slip fault on Shikoku. The 7th Joint Panel meeting was held in Seattle, Wash., U.S.A. from October 27-30, 2008.

Open-File Report

Linking field and laboratory studies: Reproductive effects of perfluorinated substances on avian populations

Although both laboratory and field studies are needed to effectively assess effects and risk of contaminants to free-living organisms, the limitations of each must be understood. The objectives of this paper are to examine information on field studies of reproductive effects of perfluorinated substances (PFASs) on bird populations, discuss the differences among field studies, and then place those results in context with laboratory studies. Hypotheses to explain the divergences between field studies and between laboratory and field studies will be discussed. Those differences include mixture issues, misattribution of the mechanism or the specific PFAS causing impairments, as well as other possible reasons. Finally, suggestions to better link laboratory and field studies will be presented. Integr Environ Assess Manag 2021;17:690–696. Published 2021. This article is a US Government work and is in the public domain in the USA.

Integrated Environmental Assessment and Management

Challenges for monitoring the extent and land use/cover changes in monarch butterflies’ migratory habitat across the United States and Mexico

This paper presents a synopsis of the challenges and limitations presented by existing and emerging land use/ land cover (LULC) digital data sets when used to analyze the extent, habitat quality, and LULC changes of the monarch (Danaus plexippus) migratory habitat across the United States of America (US) and Mexico. First, the characteristics, state of the knowledge, and issues related to this habitat are presented. Then, the characteristics of the existing and emerging LULC digital data sets with global or cross-border coverage are listed, followed by the data sets that cover only the US or Mexico. Later, we discuss the challenges for determining the extent, habitat quality, and LULC changes in the monarchs’ migratory habitat when using these LULC data sets in conjunction with the current state of the knowledge of the monarchs’ ecology, behavior, and foraging/roosting plants used during their migration. We point to approaches to address some of these challenges, which can be categorized into: (a) LULC data set characteristics and availability; (b) availability of ancillary land management information; (c) ability to construct accurate forage suitability indices for their migration habitat; and (d) level of knowledge of the ecological and behavioral patterns of the monarchs during their journey.

Land

Value of sample information in dynamic, structurally uncertain resource systems

Few if any natural resource systems are completely understood and fully observed. Instead, there almost always is uncertainty about the way a system works and its status at any given time, which can limit effective management. A natural approach to uncertainty is to allocate time and effort to the collection of additional data, on the reasonable assumption that more information will facilitate better understanding and lead to better management. But the collection of more data, either through observation or investigation, requires time and effort that often can be put to other conservation activities. An important question is whether the use of limited resources to improve understanding is justified by the resulting potential for improved management. In this paper we address directly a change in value from new information collected through investigation. We frame the value of information in terms of learning through the management process itself, as well as learning through investigations that are external to the management process but add to our base of understanding. We provide a conceptual framework and metrics for this issue, and illustrate them with examples involving Florida scrub-jays (Aphelocoma coerulescens).

PLoS ONE

Genesis of an oak-fire science consortium

With respect to fire management and practices, one of the most overlooked regions lies in the middle of the country. In this region there is a critical need for both recognition of fire’s importance and sharing of fire information and expertise. Recently we proposed and were awarded funding by the Joint Fire Science Program to initiate the planning phase for a regional fire consortium. The purpose of the consortium will be to promote the dissemination of fire information across the interior United States and to identify fire information needs of oak-dominated communities such as woodlands, forests, savannas, and barrens. Geographically, the consortium region will cover: 1) the Interior Lowland Plateau Ecoregion in Illinois, Indiana, central Kentucky and Tennessee; 2) the Missouri, Arkansas, and Oklahoma Ozarks; 3) the Ouachita Mountains of Arkansas and Oklahoma; and 4) the Cross Timbers Region in Texas, Oklahoma, and Kansas. This region coincides with the southwestern half of the Central Hardwoods Forest Region. The tasks of this consortium will be to disseminate fire information, connect fire professionals, and efficiently address fire issues within our region. If supported, the success and the future direction of the consortium will be driven by end-users, their input, and involvement.

Conference Paper

Cooperative science to inform Lake Ontario management: Research from the 2013 Lake Ontario CSMI program

Since the mid-1970s, successful Lake Ontario management actions including nutrient load and pollution reductions, habitat restoration, and fish stocking have improved Lake Ontario. However, several new obstacles to maintenance and restoration have emerged. This special issue presents management-relevant research from multiple agency surveys in 2011 and 2012 and the 2013 Cooperative Science and Monitoring Initiative (CSMI), that span diverse lake habitats, species, and trophic levels. This research focused on themes of nutrient loading and fate; vertical dynamics of primary and secondary production; fish abundance and behavior; and food web structure. Together these papers identify the status of many of the key drivers of the Lake Ontario ecosystem and contribute to addressing lake-scale questions and management information needs in Lake Ontario and the other Great Lakes and connecting water bodies.

Lake Ontario

Are there spurious temperature trends in the United States Climate Division database?

The United States (U.S.) Climate Division data set is commonly used in applied climatic studies in the United States. The divisional averages are calculated by including all available stations within a division at any given time. The averages are therefore vulnerable to shifts in average station location or elevation over time, which may introduce spurious trends within these data. This paper examines temperature trends within the 15 climate divisions of New England, comparing the NCDC's U.S. Divisional Data to the U.S. Historical Climate Network (USHCN) data. Correlation and multiple regression revealed that shifts in latitude, longitude, and elevation have affected the quality of the NCDC divisional data with respect to the USHCN. As a result, there may be issues with regard to their use in decadal-to century-scale climate change studies.

Geophysical Research Letters

Use of the Legal-Institutional Analysis Model to assess hydropower licensing negotiations

In the United States, the Federal Energy Regulatory Commission (FERC) is responsible for issuing or renewing licenses for hydropower projects owned and operated by power companies. During the licensing process, these companies are required to consult with agencies and other parties that are affected by project operating regimes. Typical participants include state and federal fish and wildlife agencies, environmental interest groups, and the FERC. One of the most difficult tasks facing participants is to reach agreement about what kinds of environmental conditions should be placed on license. Researchers at the United States Geological Survey developed a model to analyze the institutional context of natural resource disputes. The Legal-Institutional Analysis Model (LIAM) is a computerized model that allows an analyst to determine the likely behavior of each organization in a conflict. The model also analyzes the types and levels of negotiating power held by each organization. Researchers at the USGS have used the model in several cases involving hydropower license applications. To use the model, they facilitate workshops for stakeholder groups in order to develop a shared understanding of the likely obstacles and opportunities for successful resolution of the issues. This allows a systematic workshop analyses to develop strategies for successful negotiations, because they are able to better understand the negotiation problem and work more effectively with both their allies and their competitors.

Conference Paper

Field and laboratory determination of water-surface elevation and velocity using noncontact measurements

Noncontact methods for measuring water-surface elevation and velocity in laboratory flumes and rivers are presented with examples. Water-surface elevations are measured using an array of acoustic transducers in the laboratory and using laser scanning in field situations. Water-surface velocities are based on using particle image velocimetry or other machine vision techniques on infrared video of the water surface. Using spatial and temporal averaging, results from these methods provide information that can be used to develop estimates of discharge for flows over known bathymetry. Making such estimates requires relating water-surface velocities to vertically averaged velocities; the methods here use standard relations. To examine where these relations break down, laboratory data for flows over simple bumps of three amplitudes are evaluated. As anticipated, discharges determined from surface information can have large errors where nonhydrostatic effects are large. In addition to investigating and characterizing this potential error in estimating discharge, a simple method for correction of the issue is presented. With a simple correction based on bed gradient along the flow direction, remotely sensed estimates of discharge appear to be viable.

Conference Paper