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USGS2019

Migration triggers in a large herbivore: Galapagos giant tortoises navigating resources gradients on volcanoes

To understand how migratory behavior evolved and to predict the future of migratory species in the face of global environmental change it is important to quantify intra- and inter-individual variation in migratory behavior. Intra-individual variation includes behavioral response to changing environmental conditions and hence behavioral plasticity in the context of novel conditions. Inter-individual variation determines the degree of variation on which selection can act and the rate of evolutionary response to changes in average and extreme environmental conditions. Here we focus on variation in the partial migratory behavior of Galapagos giant tortoises ( Chelonoidis spp.), which exhibit high fidelity to migratory routes over many years. We evaluate the extent and mechanisms by which tortoises adjust migration timing in response to varying annual environmental conditions, integrating movement data within a bioenergetic model of tortoise migration to quantify the fitness consequences of migration timing. We find strong inter-individual variation in the timing of migration, which was not affected by environmental conditions prevailing at the time of migration but rather by marginal expectations estimated from multi-annual averaged conditions, leading to an average annual loss in efficiency of ~15% relative to optimal timing based on year-specific conditions. These results point towards a limited ability of tortoises to adjust the timing of their migrations based on prevailing (and, by extension, future) conditions, suggesting that the adaptability of tortoise migratory behavior to changing conditions is predicated more on past “normal” conditions than responsive to current, changing conditions. Our work offers insights into the level of environmental-tuning in migratory behavior and a general framework for future research across taxa.

Galapagos Islands↗

USGS2009

Ocean carbon and biogeochemistry scoping workshop on terrestrial and coastal carbon fluxes in the Gulf of Mexico, St. Petersburg, FL, May 6-8, 2008

Despite their relatively small surface area, ocean margins may have a significant impact on global biogeochemical cycles and, potentially, the global air-sea fluxes of carbon dioxide. Margins are characterized by intense geochemical and biological processing of carbon and other elements and exchange large amounts of matter and energy with the open ocean. The area-specific rates of productivity, biogeochemical cycling, and organic/inorganic matter sequestration are high in coastal margins, with as much as half of the global integrated new production occurring over the continental shelves and slopes (Walsh, 1991; Doney and Hood, 2002; Jahnke, in press). However, the current lack of knowledge and understanding of biogeochemical processes occurring at the ocean margins has left them largely ignored in most of the previous global assessments of the oceanic carbon cycle (Doney and Hood, 2002). A major source of North American and global uncertainty is the Gulf of Mexico, a large semi-enclosed subtropical basin bordered by the United States, Mexico, and Cuba. Like many of the marginal oceans worldwide, the Gulf of Mexico remains largely unsampled and poorly characterized in terms of its air-sea exchange of carbon dioxide and other carbon fluxes. In May 2008, the Ocean Carbon and Biogeochemistry Scoping Workshop on Terrestrial and Coastal Carbon Fluxes in the Gulf of Mexico was held in St. Petersburg, FL, to address the information gaps of carbon fluxes associated with the Gulf of Mexico and to offer recommendations to guide future research. The meeting was attended by over 90 participants from over 50 U.S. and Mexican institutions and agencies. The Ocean Carbon and Biogeochemistry program (OCB; http://www.us-ocb.org/) sponsored this workshop with support from the National Science Foundation, the National Oceanic and Atmospheric Administration, the National Aeronautics and Space Administration, the U.S. Geological Survey, and the University of South Florida. The goal of the workshop was to bring together researchers from multiple disciplines studying terrestrial, aquatic, and marine ecosystems to discuss the state of knowledge in carbon fluxes in the Gulf of Mexico, data gaps, and overarching questions in the Gulf of Mexico system. The discussions at the workshop were intended to stimulate integrated studies of marine and terrestrial biogeochemical cycles and associated ecosystems that will help to establish the role of the Gulf of Mexico in the carbon cycle and how it might evolve in the face of environmental change. The information derived from the plenary sessions, questions, and recommendations formulated by the participants will drive future research projects. Further discussion of carbon dynamics is needed to address scales of variability, the infrastructure required for study, and the modeling framework for cross-system integration. During the workshop, participants discussed and provided a number of priorities and recommendations, which are listed on p. 2 of the report. Participants recognized that the key to understanding the Gulf of Mexico system requires international collaboration with scientists from countries adjacent to the Gulf of Mexico. Improved collaboration across existing research community boundaries will be critical and should be encouraged by the funding agencies.

Open-File Report↗

USGS2019

Fossilized diatoms of siliceous hydrothermal deposits in Yellowstone National Park, USA

The study of eukaryotic extremophiles is relatively novel, and, therefore, documentation of the structure and function of micro-organisms in continental hydrothermal systems globally is limited. In this study, we investigate fossil diatoms in siliceous hydrothermal deposits of the Upper Geyser and Yellowstone Lake hydrothermal basins in Yellowstone National Park, and utilize preserved diatom assemblages to infer local environmental conditions. Siliceous sinter from both the Upper Geyser Basin and Yellowstone Lake contains evidence of in-situ diatom growth within these environments. At Upper Geyser Basin, the assemblage consisted of species that could grow on moist siliceous sinter and was dominated by Rhopalodia gibberula . Diatom valves were found in various preservation states, ranging from nearly pristine to highly diagenetically altered. Diatoms collected from siliceous spires in Yellowstone Lake consisted largely of tychoplanktonic and benthic species that were almost certainly growing on the outside of the structure, with an assemblage indicative of relatively shallow, alkaline waters. What remains unclear without access to material for high-resolution dating is whether diatoms colonized the spires during hydrothermal activity or after activity ceased. Our results indicate that diatom frustules can, to some extent, survive alteration in low-temperature (<76°C) hydrothermal environments.

Wyoming↗

USGS1999

Age and paleoenvironment of the imperial formation near San Gorgonio Pass, Southern California

Microfossiliferous marine sediments of the Imperial Formation exposed in the Whitewater and Cabazon areas, near San Gorgonio Pass, southern California, are late Miocene in age and were deposited at intertidal to outer neritic depths, and possibly upper bathyal depths. A late Miocene age of 7.4 to >6.04 Ma is based on the ranges of age-diagnostic benthic foraminifers (Cassidulina delicata and Uvigerina peregrina), planktic foraminifers (Globigerinoides obliquus, G. extremus, and Globigerina nepenthes; zones N17-N19), and calcareous nannoplankton (Discoaster brouweri, D. aff. D. surculus, Reticulofenestra pseudoumbilicata, Sphenolithus abies, and S. neoabies; zones CN9a-CN11) coupled with published K/Ar dates from the underlying Coachella Formation (10.1 ?? 1.2 Ma; Peterson, 1975) and overlying Painted Hill Formation (6.04 ?? 0.18 and 5.94 ?? 0.18 Ma; J. L. Morton in Matti and others, 1985 and Matti and Morton, 1993). Paleoecologic considerations (sea-level fluctuations and paleotemperature) restrict the age of the Imperial Formation to 6.5 through 6.3 Ma. Benthic foraminiferal assemblages indicate that the Imperial Formation in the Whitewater and Cabazon sections accumulated at inner neritic to outer neritic (0-152 m) and possibly upper bathyal (152-244 m) depths. Shallowing to inner neritic depths occurred as the upper part of the section was deposited. This sea-level fluctuation corresponds to a global highstand at 6.3 Ma (Haq and others, 1987). Planktic foraminifers suggest an increase in surface-water temperatures upsection. A similar increase in paleotemperatures is interpreted for the North Pacific from 6.5 to 6.3 Ma (warm interval W10 of Barron and Keller, 1983). Environmental contrasts between the Whitewater and Cabazon sections of the Imperial Formation provide evidence for right-lateral displacements on the Banning fault, a late Miocene strand of the San Andreas fault system. The Cabazon section lies south of the Banning fault, and has been displaced west relative to the Whitewater sections. The Cabazon section was deposited at greater depths, suggesting that it accumulated farther offshore than the Whitewater section. If the Salton Trough was a southward-opening, elongated northwest-southeast basin similar to the modern Gulf of California, the Cabazon sequence probably has been displaced right-laterally from a position farther southeast of the Whitewater sequence. This relation requires late Miocene displacements greater than the present 12 km cross-fault separation between the two Imperial sections in the San Gorgonio Pass area.

Journal of Foraminiferal Research↗

USGS2021

Demographic risk assessment for a harvested species threatened by climate change: Polar bears in the Chukchi Sea

Climate change threatens global biodiversity. Many species vulnerable to climate change are important to humans for nutritional, cultural, and economic reasons. Polar bears Ursus maritimus are threatened by sea-ice loss and represent a subsistence resource for Indigenous people. We applied a novel population modeling-management framework that is based on species life history and accounts for habitat loss to evaluate subsistence harvest for the Chukchi Sea (CS) polar bear subpopulation. Harvest strategies followed a state-dependent approach under which new data were used to update the harvest on a predetermined management interval. We found that a harvest strategy with a starting total harvest rate of 2.7% (˜85 bears/yr at current abundance), a 2:1 male-to-female ratio, and a 10-yr management interval would likely maintain subpopulation abundance above maximum net productivity level for the next 35 yr (approximately three polar bear generations), our primary criterion for sustainability. Plausible bounds on starting total harvest rate were 1.7–3.9%, where the range reflects uncertainty due to sampling variation, environmental variation, model selection, and differing levels of risk tolerance. The risk of undesired demographic outcomes (e.g., overharvest) was positively related to harvest rate, management interval, and projected declines in environmental carrying capacity; and negatively related to precision in population data. Results reflect several lines of evidence that the CS subpopulation has been productive in recent years, although it is uncertain how long this will last as sea-ice loss continues. Our methods provide a template for balancing trade-offs among protection, use, research investment, and other factors. Demographic risk assessment and state-dependent management will become increasingly important for harvested species, like polar bears, that exhibit spatiotemporal variation in their response to climate change.

Chukchi Sea↗

USGS2026

Drivers of ecosystem metabolism in an anthropogenically modified delta

Estuaries are under threat globally from a wide range of stressors, with rates of ecosystem metabolism – respiration (R), gross primary production (GPP), and net ecosystem metabolism (NEM) – representing a way for resource managers to quantify their impacts. In this study, we assessed how natural and anthropogenic stressors have altered metabolism within the extensively modified Sacramento-San Joaquin Delta (“Delta”) in California, USA. Metabolism was estimated using a diel open-water technique utilizing dissolved oxygen measurements from a high frequency (15 min) water quality monitoring array, and spanned 6 sites across 11 years (2014–2025). Our analyses were driven by a conceptual model of Delta carbon (C) cycling focused on 1) Invasive aquatic vegetation (IAV), 2) Phytoplankton, 3) Wastewater treatment plant (WWTP) upgrades, 4) Large-scale flow alterations, and 5) Wet vs. dry years. We found that allochthonous C fuels net heterotrophy in the outer riverine sections of the Delta, while the heavily vegetated central Delta produces autochthonous C remineralized elsewhere in the system. IAV were the dominant primary producers, with low phytoplankton production except during a historic bloom. WWTP upgrades imparted negligible changes to metabolism, with low chlorophyll a (< 5 µg L −1 ) both before and after. Introduction of a flow barrier – a management response to drought – hydrodynamically isolated deep-water channels from nearby shallow areas, resulting in decreased metabolism indicative of changes to C transport. Contrary to past research, low rainfall years were associated with increased metabolism. This study demonstrates how multi-sensor arrays can be used to quantify ecosystem responses to major environmental stressors.

California↗

USGS2013

Species of conservation concern and environmental stressors: Local regional and global effects

Species conservation has traditionally been based on individual species within the context of their requisite habitat, which is generally defined as the communities and ecosystems deemed necessary for their presence. Conservation decisions are hampered by the fact that environmental stressors that poetically threaten the persistence of species can operate at organizational levels larger than the habitat or home range of a focal species. Resource managers must therefore simultaneously consider local, regional, and/or global scale stressors for effective conservation and management of species of concern. The wide ranging effects associated with global stressors such as climate change may exceed or exacerbate the effects of local or regional stressors, they still need to understand the direct and interactive effects of global stressors and ultimately how they affect the lands they manage. Conservation of species in southern Nevada is further complication by the fact that the region includes one of the largest and fastest growing urban centers in North America. To accomplish the goal of species conservation, resource managers must identify actionable management options that mitigate the effects of local and regional stressor in the context of the effects of global stressors that are beyond their control. Species conservation is typically focused on a subset often referred to as species of conservation concern that have either demonstrated considerable decline or are naturally rare or have limited distributions. Stressors can directly and indirectly impact species in a variety of ways and through a diversity of mechanisms. Some stressors have been more intense in the past (e.g., livestock grazing) whereas other are now only emerging as new stressors (e.g., solar energy development, climate change). The primary stressors affecting southern Nevada ecosystems are listed in table 2.1 and reviewed in detail in Chapter 2. This chapter addresses Dub-goal 1.4 in the SNAP Science Research Strategy which is to sustain and enhance southern Nevada's biotic communities to preserve biodiversity wand maintain viable populations (table 1.3; Turner and others 2009). We provide numerous examples of how stressors affect the range and/or habitat of select species of conservation concern. It is important to note that the species or groups discussed in this chapter by no means represent a comprehensive treatment of all species of conservation concern listed in Table 1.2 (Chapter 1). Rather, several species were chosen as examples for each southern Nevada ecosystem type to illustrate how stressors and linkages among them can affect species of conservation concern, keeping in mind that many of the species considered here are found in more than one ecosystem type. In addition, the stressors that may impact a species in one ecosystem may not be those that affect it in another ecosystem and different species in the same ecosystem may not be affected by the same suite of stressors. Finally, at the start of each ecosystem section we summarize key resource concerns, species used as examples, key stressors, and potential synergistic effects of those stressors relative to the species example.

Nevada↗

USGS2019

Decreased atmospheric nitrogen deposition in eastern North America: Predicted responses of forest ecosystems

Historical increases in emissions and atmospheric deposition of oxidized and reduced nitrogen (N) provided the impetus for extensive, global-scale research investigating the effects of excess N in terrestrial and aquatic ecosystems, with several regions within the Eastern Deciduous Forest of the United States found to be susceptible to negative effects of excess N. The Clean Air Act and associated rules have led to decreases in emissions and deposition of oxidized N, especially in eastern U.S., representing a research challenge and opportunity for ecosystem ecologists and biogeochemists. The purpose of this paper is to predict changes in the structure and function of North American forest ecosystems in a future of decreased N deposition. Hysteresis is a property of a system wherein output is not a strict function of corresponding input, incorporating lag, delay, or history dependence, particularly when the response to decreasing input is different from the response to increasing input. We suggest a conceptual hysteretic model predicting varying lag times in recovery of soil acidification, plant biodiversity, soil microbial communities, forest carbon (C) and N cycling, and surface water chemistry toward pre-N impact conditions. Nearly all of these can potentially respond strongly to reductions in N deposition. Most responses are expected to show some degree of hysteresis, with the greatest delays in response occurring in processes most tightly linked to “slow pools” of N in wood and soil organic matter. Because experimental studies of declines in N loads in forests of North America are lacking and because of the expected hysteresis, it is difficult to generalize from experimental results to patterns expected from declining N deposition. These will likely be long-term phenomena, difficult to distinguish from other, concurrent environmental changes, including elevated atmospheric CO 2 , climate change, reductions in acidity, invasions of new species, and long-term vegetation responses to past disturbance.

Environmental Pollution↗

USGS2008

Differential exposure, duration, and sensitivity of unionoidean bivalve life stages to environmental contaminants

Freshwater mussels (superfamily Unionoidea) are in serious global decline and in urgent need of protection and conservation. The declines have been attributed to a wide array of human activities resulting in pollution and water-quality degradation, and habitat destruction and alteration. Linkages among poor water quality, pollutant sources, and mussel decline in rivers and streams have been associated with results of laboratory-based tests of specific pollutants. However, uncertainties remain about the relationship of laboratory data to actual contaminant exposure routes for various mussel species, life stages, and in the habitats occupied during these exposures. We evaluated the pathways of exposure to environmental pollutants for all 4 life stages (free glochidia, encysted glochidia, juveniles, adults) of unionoidean mussels and found that each life stage has both common and unique characteristics that contribute to observed differences in exposure and sensitivity. Free glochidia typically are exposed only briefly (e.g., seconds to days) through surface water, whereas adults sustain exposure over years to decades through surface water, pore water, sediment, and diet. Juveniles live largely burrowed in the sediment for the first 0 to 4 y of life. Thus, sediment, pore water, and diet are the predominant exposure routes for this life stage, but surface water also might contribute to exposure during certain periods and environmental conditions. The obligate parasitic stage (encysted glochidia stage) on a host fish might be exposed from surface water while partially encysted or from toxicants in host-fish tissue while fully encysted. Laboratory methods for testing for acute and chronic exposures in water have advanced, and toxicant-specific information has increased in recent years. However, additional research is needed to understand interactions of life history, habitat, and long-term exposure to contaminants through water, pore water, sediment, and diet so that the risks of environmental exposures can be properly assessed and managed. ?? 2008 by The North American Benthological Society.

Journal of the North American Benthological Societ↗

USGS2026

Estimating GPS-based social aggregation metrics using collar data

Understanding social aggregation patterns in ungulate herds is essential for gaining behavioral insights, optimizing resource use, reducing human-wildlife conflict, and managing disease risk. As chronic wasting disease is the preeminent disease-related threat to cervid populations in North America, knowledge of contact between individuals and spatiotemporal patterns of aggregation provides opportunity to understand and potentially reduce disease risk while supporting sustainable population sizes. Herd density metrics, derived from global positioning system (GPS) data, can be used to inform management decisions. To effectively compare aggregation behavior within and between herds, aggregation metrics must be accurate. However, the consistency of metrics across different GPS collar sample sizes remains unclear and robust studies of big game require understanding how these factors may vary in different contexts. We examined the minimum sample size necessary for reliable calculations of three aggregation metrics: pairwise inter-animal distances, daily proximity rates, and kernel density estimate (KDE) areas. We used GPS collar data from the Jackson and West Green River elk herds ( Cervus canadensis ) in western Wyoming, USA, that differ in herd size and group structure (single versus multiple sub-groups), representing common practical contexts. Elk locations were acquired for the Jackson herd between 2016 and 2019 and from 2005 to 2010 for the West Green River herd. Herd-specific characteristics substantially influence the sample size necessary for accurate density measurements. As predicted, larger herds with many groups require more GPS collars than small herds with fewer groups. The sample size needed to accurately estimate aggregation varies by metric, with KDE areas, useful for indexing environmentally transmitted disease risk, generally requiring fewer samples, especially in high-density contexts. The required sample size also varies with seasonal changes in density. During periods of highest density, similar sample sizes are required to estimate inter-animal distances and proximity rates regardless of herd characteristics. Our results have implications for costs associated with studying big game herds, indicating fewer collars may be sufficient in some cases. These insights can aid researchers and managers in determining the appropriate number of GPS collars required for effective herd monitoring and informing relevant aggregation metrics for their management goals.

Wyoming↗

USGS2025

Evapotranspiration terminology and definitions

Evapotranspiration (ET), the combined process of evaporation from soil and plant surfaces and transpiration from plant tissue, plays a pivotal role in the global water and energy balance. Accurately quantifying ET at various spatial scales is important for diverse applications, including irrigation and natural resource management. While efforts to standardize ET methodology have progressed over the last few decades, some confusion and disagreements in terminology persist among communities of researchers and practitioners involved in the measurement, estimation, and simulation of ET. This technical note addresses the historical evolution and standardization of ET terminology, aiming to reduce and mitigate disparities in definitions and usage by advocating for standardized definitions and emphasizing the adoption of reference ET ( ET ref ) terminology to promote consistency and accuracy and to avoid ambiguity. This document provides comprehensive definitions of key terms, including crop (i.e., vegetation cover) coefficients, consumptive use (CU), actual crop evapotranspiration ( ET a ), and ET ref variants for short (grass, ET o ) and tall (alfalfa, ET r ) reference crops. Practical discussion on several relevant topics is given: (1) single and dual crop coefficient approaches, (2) applications to nonagricultural vegetation, (3) recommended subscripts for terms, (4) practical guidelines and considerations for ET ref calculation, (5) encouragement to replace “potential ET” terminology with better terms, (6) clarification on maximum ET ( ET max ) and maximum crop coefficient ( K c max ) terms, (7) ET products derived from remote sensing, (8) a brief description of the role of ET in water rights, and (9) a figure illustrating the use of the terms defined herein. The conclusion emphasizes the importance of consistent terminology for effective communication among researchers and end-users, which will facilitate the adoption of standardized ET methods and technologies. This technical note was created by the American Society of Civil Engineers, Environmental and Water Resources Institute (ASCE-EWRI), Evapotranspiration in Irrigation and Hydrology Committee, with input and endorsement from other relevant organizations in the United States and internationally. This note serves as a comprehensive reference guide for ET practitioners and researchers.

Irrigation and Drainage Engineering↗

USGS2018

Development of an aerial population survey method for elk (Cervus elaphus) in Rocky Mountain National Park, Colorado

Executive Summary Since the early 1990s, substantial effort and funding have been expended to conduct research to guide development of a 20-year Elk and Vegetation Management Plan for Rocky Mountain National Park (RMNP) in Colorado. One goal of the plan is to maintain the elk ( Cervus elaphus ) population size at the lower end of the natural range of variation. To implement management actions called for in the plan, accurate and reliable population estimates are needed, as well as a better understanding of the spatial and temporal distribution of elk. The previous aerial survey protocol and population estimation model used by the park had not been updated since the model’s initial calibration more than 15 years ago and the model was developed with an insufficient number (n=44) of observations. Thus we initiated research to reevaluate, update, and improve elk population estimation protocols for RMNP. We considered several alternative survey and analysis methods, and concluded that a hybrid population-estimation model using a simultaneous double-observer technique with sighting covariates was the most appropriate and effective aerial survey methodology for this population and the environmental conditions in RMNP. Instructional protocols for conducting these surveys in the future, along with datasheets, are provided in this report’s appendixes. To develop an improved method for aerial elk surveys, we used elk radio-collar location data from our study and other studies, and applied geographic information system analyses to define the survey area and develop effective, repeatable survey transect lines. We used telemetry data from radio-collared elk to inform our understanding of the temporal and spatial scale of elk movements across the park boundary, elk use of tree cover during potential survey hours, and elk use of different elevations within their range. Determining where elk were during surveys helped to fine-tune a survey design that improved spatial cover-age and decreased costs where possible, while standardizing the method to make it repeatable from year to year. We conducted aerial helicopter surveys to test our methodology in an adaptive, iterative process during three winters: 2007–2008, 2008–2009, and 2009–2010. We gained new information on each survey and used results to refine subsequent surveys. Our results confirm that elk movements were highly dynamic with respect to park boundary crossings; an average of six round trips from the park to Estes Park, Colorado, and back per month were taken by global positioning system-collared bull elk. We observed a strong diurnal temporal pattern of bull elk use of trees; elk were found in dense tree cover from 15:00−22:00 but not as often during morning and early afternoon hours when surveys were conducted. We used information on elk use of different altitudes to refine and establish a more efficient survey area. During the time of our study, a concurrent study in the park deployed 120 very high frequency radio collars on elk cows. We used those collar locations during our flights to increase sample size and to evaluate the level of precision we would gain by using “known fates analysis” (in which elk were known to be in the survey area, out of the survey area, or deceased based on radio-collar locations collected simultaneously during aerial surveys). Using radio-collar locations reduced bias by 1.1–8.8 percent and increased precision (that is, reduced the width of confidence intervals). This report provides final population estimates analyzed with and without radio-collar data to demonstrate what is gained by using marked individuals.

Colorado↗

USGS2011

Survival, growth and reproduction of non-indigenous Nile tilapia, Oreochromis niloticus (Linnaeus 1758). I. Physiological capabilities in various temperatures and salinities

The physiological tolerances of non-native fishes is an integral component of assessing potential invasive risk. Salinity and temperature are environmental variables that limit the spread of many non-native fishes. We hypothesised that combinations of temperature and salinity will interact to affect survival, growth, and reproduction of Nile tilapia, Oreochromis niloticus , introduced into Mississippi, USA. Tilapia withstood acute transfer from fresh water up to a salinity of 20 and survived gradual transfer up to 60 at typical summertime (30°C) temperatures. However, cold temperature (14°C) reduced survival of fish in saline waters ≥10 and increased the incidence of disease in freshwater controls. Although fish were able to equilibrate to saline waters in warm temperatures, reproductive parameters were reduced at salinities ≥30. These integrated responses suggest that Nile tilapia can invade coastal areas beyond their point of introduction. However, successful invasion is subject to two caveats: (1) wintertime survival depends on finding thermal refugia, and (2) reproduction is hampered in regions where salinities are ≥30. These data are vital to predicting the invasion of non-native fishes into coastal watersheds. This is particularly important given the predicted changes in coastal landscapes due to global climate change and sea-level rise.

Mississippi↗

USGS2013

Diatom evidence for the onset of Pliocene cooling from AND-1B, McMurdo Sound, Antarctica

The late Pliocene, ~ 3.3–3.0 Ma, is the most recent interval of sustained global warmth in the geologic past. This window is the focus of climate reconstruction efforts by the U.S. Geological Survey's Pliocene Research, Interpretation, and Synoptic Mapping (PRISM) Data/Model Cooperative, and may provide a useful climate analog for the coming century. Reconstructions of past surface ocean conditions proximal to the Antarctic continent are essential to understanding the sensitivity of the cryosphere to this key interval in Earth's climate evolution. An exceptional marine sediment core collected from the southwestern Ross Sea (78° S), Antarctica, during ANDRILL's McMurdo Ice Shelf Project preserves evidence of dramatic fluctuations between grounded ice and productive, open ocean conditions during the late Pliocene, reflecting orbitally-paced glacial/interglacial cycling. In this near-shore record, diatom-rich sediments are recovered from interglacial intervals; two of these diatomites, from ~ 3.2 Ma and 3.03 Ma, are within the PRISM chronologic window. The diatom assemblages identified in PRISM-age late Pliocene diatom-rich sediments are distinct from those in mid-Pliocene and later Pliocene/Pleistocene intervals recovered from AND-1B, and comprise both extant taxa with well-constrained ecological preferences and a diverse extinct flora, some members of which are previously undescribed from Antarctic sediments. Both units are dominated by Chaetoceros resting spores, an indicator of high productivity and stratification that is present at much lower abundance in materials both older and younger than the PRISM-age sediments. Newly described species of the genus Fragilariopsis , which first appear in the AND-1B record at 3.2 Ma, are the most abundant extinct members of the PRISM-age assemblages. Other extant species with established environmental affinities, such as Fragilariopsis sublinearis , F . curta , Stellarima microtrias , and Thalassiothrix antarctica , are present at lower abundances. Environmental inferences drawn from extant diatom assemblages are in good agreement with those from Chaetoceros resting spores and the Fragilariopsis radiation. All three lines of evidence indicate the onset of late Pliocene cooling in the Ross Sea near-shore environment at 3.2 Ma, with intensification and possible regional persistence of summer sea ice by 3.03 Ma. An important implication of this research is the indication that the Ross Ice Shelf fluctuated dramatically on orbital timescales at a time when nearshore Antarctic conditions were only modestly warmer than present.

Palaeogeography, Palaeoclimatology, Palaeoecology↗

USGS2010

The potential influence of changing climate on the persistence of salmonids of the inland west

The Earth's climate warmed steadily during the 20th century, and mean annual air temperatures are estimated to have increased by 0.6°C (Intergovernmental Panel on Climate Change, 2007). Although many cycles of warming and cooling have occurred in the past, the most recent warming period is unique in its rate and magnitude of change (Siegenthaler and others, 2005) and in its association with anthropogenic emissions of greenhouse gases (Intergovernmental Panel on Climate Change , 2007). The climate in the western United States warmed in concert with the global trend but at an accelerated rate (+0.8°C during the 20th century; Saunders and others, 2008). The region could also prove especially sensitive to future changes because the relatively small human population is growing rapidly, as are demands on limited water supplies. Regional hydrological patterns are dominated by seasonal snow accumulation at upper elevations. Most of the region is relatively dry, and both terrestrial and aquatic ecosystems are strongly constrained b y water availability (Barnett and others, 2008; Brown and others, 2008). Stream environments are dynamic and climatically extreme, and salmonid fishes are the dominant elements of the native biodiversity (McPhail and Lindsey, 1986; Waples and others, 2008). Salmonids have broad economic and ecologic importance, but a century of intensive water resource development, nonnative fish stocking, and land use has significantly reduced many populations and several taxa are now protected under the Endangered Species Act (Thurow and others, 1997; Trotter, 2008). Because salmonids require relatively pristine, cold water environments and are often isolated in headwater habitats, members of this group may be especially vulnerable to the effects of a warming climate (Keleher and Rahel, 1996; Rieman and others, 2007; Williams and others, 2009). Warming during the 20th century drove a series of environmental trends that have profound implications for many aspects of salmonid habitat, including disturbance regimes such as wildfire, and unfavorable changes to thermal and hydrologic properties of aquatic systems. Warmer air temperatures have been associated with decreased winter snow accumulations, have accelerated snowmelt, and have advanced the timing of peak runoff by several days to weeks across most of western North America (Stewart and others, 2005; Barnett and others, 2008). Less snow and earlier runoff decrease aquifer recharge, make less water available for groundwater inputs to streams, and are contributing to widespread decreases in summer low flows (Stewart and others, 2005; Rood and others, 2008; Luce and Holden 2009). Interannual variability in stream flow is increasing, as is the persistence of multi-year extreme conditions (McCabe and others, 2004; Pagano and Garen 2005). In many areas of western North America, flood risks have increased in association with warmer temperatures during the 20th century (Hamlet and Lettenmaier, 2005). Streams where midwinter temperatures are near freezing have proven especially sensitive to increased flooding because of associated transitional hydrological patterns (mixtures of rainfall and snowmelt) and propensity for occasional rain-on-snow events to rapidly melt winter snowpack and generate large floods (Hamlet and Lettenmaier, 2005). Stream temperatures in many areas are increasing (Peterson and Kitchell, 2001; Morrison and others, 2002; Bartholow, 2005; Kaushal and others, 2010), due to both air temperature increases and reduced summer flows that make streams more sensitive to warmer air temperatures (Isaak and others, 2010). In recent decades, wildfires have become more common across much of the western United States during periods of more frequent droughts (Westerling and others, 2006; Hoerling and Eischeid, 2007), and local stream temperature can increase in postfire environments (Gresswell, 1999; Dunham and others, 2007). Fire-related temperature increase within streams is commonly a transient phenomenon, lasting only until riparian vegetation has recovered (Gresswell, 1999); however, ongoing climate change could preclude recovery to higher stature, prefire vegetation types in some areas (McKenzie and others, 2004; van Mantgem and Stephenson, 2007), resulting in a loss of critical riparian shading. Additionally, when wildfires occur in steep mountain topographies, the vegetation that stabilize s soils on hillslopes is often killed and landslides become more prevalent (Gresswell, 1999). Landslides int o stream channels form debris flows composed of sediment slurries and dead trees that can scour channels to bedrock and further exacerbate stream heating, delay recovery of riparian areas, or extirpate fish populations (Gresswell, 1999; May and Gresswell, 2003; Dunham and others, 2007). Changes in stream environments will shift habitat distributions, sometimes unpredictably, in both time and space for many salmonid fishes. Water temperature fundamentally influences aquatic ecosystem health because distribution, reproduction, fitness, and survival of ectothermic organisms are inextricably linked to the thermal regime of the environment. Historically, research has focused on defining lethal thermal limits of salmonids (Eaton and others, 1995; Selong and others, 2001; Todd and others, 2008); however, water temperature is known to be important in biological processes at a variety of spatial scales and levels of biological organization (Rahel and Olden, 2008; McCullough and others, 2009). For instance, trout are affected directly by water temperature through feeding, metabolism, and growth rates, and indirectly by factors such as prey availability and species interactions (Wehrly and others, 2007; Rahel and Olden, 2008). Where cold water temperatures currently limit habitat suitability and distributions of some species (for example, at the highest and most northerly distributional extents; Nakano and others, 1996; Coleman and Fausch, 2007), a warming climate may gradually increase the quality and extent of suitable habitat. Over time, previously constrained populations are expected to expand into these new habitats and increase in number. Some evidence suggests this may already be happening in Alaska, where streams in recently deglaciated areas are being colonized by emigrants from nearby salmon and char populations (Milner and others, 2000). Unfortunately, many of the sensitive salmonid species that are often the focus of western managers are unlikely to benefit from future water temperature increases. Warmer stream temperatures will facilitate invasion by nonnative species that are broadly established in downstream areas into upstream areas where they will compete with native species (Rieman and others, 2006; Rahel and Olden, 2008; Fausch and others, 2009). In other cases, warmer stream temperatures will render thermally suitable habitats unsuitable in downstream areas and effect net losses of habitat because upstream distributions are often constrained by streams that are too small or steep (Hari and others, 2006; Isaak and others, 2010). Both scenarios are realistic for fish species like bull trout ( Salvelinus confluentus ) (Rieman and others, 2006; Rieman and others, 2007), the various subspecies of cutthroat trout ( Oncorhynchus clarkii ) (Williams and others, 2009), Gila trout ( Oncorhynchus gilae gilae ) (Kennedy and others, 2008), and Apache trout ( Oncorhynchus gilae apache ) (Rinne and Minckley, 1985; Carmichael and others, 1993). As native species are increasingly confined to smaller and more isolated habitats by a gradually warming climate, the effects of wildfires (whether related to lethal changes in water quality during a fire, channel debris flows, or chronic postfire warming ) could have greater proportional effects on remaining habitats (for example, Brown and others, 2001; Rieman and others, 2007). If these changes were accompanied by additional hydrologic alterations associated with changes to the magnitude, frequency, duration, timing, and rate of change of discharge patterns (Jager and others, 1999; Henderson and others, 2000), populations may begin to lose some of their historic resilience and become ever more susceptible to local extirpations. As dramatic and extensive as climatic and environmental trends are for salmonid habitats, global climate models (GCMs) project that many of these trends will continue and even accelerate until at least the middle of the 21st century (Intergovernmental Panel on Climate Change, 2007). Current projections suggest mean annual air temperatures will increase by an additional 1–3°C, and early indications are that climate trajectory is at the higher end of this range (Pittock, 2006; Raupach and others, 2007). Although predicted changes vary considerably, even the most conservative estimates suggest a warming rate that will be twice that observed during the 20th century. Projections for the midcentury are most certainly due to the effects of greenhouse gases already emitted or predicted in the short term, uncertainties of the effects of longer-term greenhouse gas emissions, short-term climate cycles, and process errors associated with climate models (Cox and Stephenson, 2007). Projections of changes in total precipitation are less certain than those for air temperatures, but most GCMs project relatively small changes in the Northwest, with the exception of slightly drier summer periods (Mote and others, 2008; Karl and others, 2009). In the Southwest, however, significant decreases (such as 15–30 percent ) are projected during most periods of the year, and this area is one of the few for which Intergovernmental Panel on Climate Change (2007) precipitation projections have a high level of certainty (Hoerling and Eischeid, 2007; Karl and others, 2009). Clearly, managers of native salmonids in the wester n United States should consider adjusting management strategies to accommodate a warmer and possibly drier future (Williams and others, 2009). Tools are needed to forecast where important changes may occur and how conservation efforts should be prioritized. In this Open-File Report, we document our initial efforts in this regard for 10 species and subspecies of inland trout and Montana Arctic grayling ( Thymallus arcticus ) across the western United States.

Arizona, California, Colorado, Idaho, Montana, Nev↗

USGS2021

Drivers of methane flux differ between lakes and reservoirs, complicating global upscaling efforts

Methane is an important greenhouse gas with growing atmospheric concentrations. Freshwater lakes and reservoirs contribute substantially to atmospheric methane concentrations, but the magnitude of this contribution is poorly constrained. Uncertainty stems partially from whether the sites currently sampled represent the global population as well as incomplete knowledge of which environmental variables predict methane flux. Thus, determining the main drivers of methane flux across diverse waterbody types will inform more accurate upscaling approaches. Here we use a new database of total, diffusive, and ebullitive areal methane emissions from 313 lakes and reservoirs (ranging in surface area from 6 m 2 to 5,400 km 2 ) to identify the best predictors of methane emission. We found that the best predictors of methane emission differed by waterbody type (lakes vs. reservoirs), and that ecosystem morphometric variables (e.g., surface area and maximum depth) were more important predictors in lakes whereas metrics of autochthonous production (e.g., chlorophyll a ) were more important in reservoirs. We also found that productivity strongly predicted methane ebullition, whereas ecosystem morphometry and waterbody type were more important predictors of diffusive methane flux. Finally, we identify several knowledge gaps that limit upscaling efforts. First, we need more methane emission measurements in small reservoirs, large lakes, and both natural and artificial ponds. Additionally, more accurate upscaling efforts require improved global information about waterbody surface area, waterbody type (lake vs. reservoir), ice phenology, and the distribution of productivity‐related predictor variables such as total phosphorus, DOC, and chlorophyll a .

Journal of Geophysical Research-Biogeosciences↗

USGS2025

Occurrence of pesticides in Oregon coastal waters

Pesticides are used globally for a wide range of applications including agricultural, forestry, roadsides, freshwater systems, and personal use. While pesticides have ensured efficient crop production, they are frequently transported away from application sites and are found in almost all terrestrial and aquatic environments. Pesticides are frequently detected in watersheds and rivers, but there is limited research on pesticide presence in United States (U.S.) marine environments. To address these data gaps, this study documents pesticide occurrence in U.S. coastal waters, providing new understanding of pesticide contamination in offshore environments. Polar organic chemical integrative samples (POCIS) were deployed at five sites along the Oregon, U.S. coast to examine the occurrence of pesticides. Between two and seven different pesticides were detected at every site, with herbicides diuron, and atrazine, and fungicides carbendazim, propiconazole, and tebuconazole being the most frequently detected at three sites. The prevalence of herbicides and fungicides in coastal waters indicates a connection between terrestrial pesticide practices and marine contamination. These findings provide new insights into the presence of pesticides in coastal nearshore and offshore waters and suggest that a comprehensive monitoring effort could enhance our understanding of sources, transport, and pesticide risks for marine species both nearshore and offshore.

Oregon↗

USGS2015

Influence of changes in wetland inundation extent on net fluxes of carbon dioxide and methane in northern high latitudes from 1993 to 2004

Estimates of the seasonal and interannual exchanges of carbon dioxide (CO 2 ) and methane (CH 4 ) between land ecosystems north of 45°N and the atmosphere are poorly constrained, in part, because of uncertainty in the temporal variability of water-inundated land area. Here we apply a process-based biogeochemistry model to evaluate how interannual changes in wetland inundation extent might have influenced the overall carbon dynamics of the region during the time period 1993–2004. We find that consideration by our model of these interannual variations between 1993 and 2004, on average, results in regional estimates of net methane sources of 67.8 ± 6.2 Tg CH 4 yr −1 , which is intermediate to model estimates that use two static inundation extent datasets (51.3 ± 2.6 and 73.0 ± 3.6 Tg CH 4 yr −1 ). In contrast, consideration of interannual changes of wetland inundation extent result in regional estimates of the net CO 2 sink of −1.28 ± 0.03 Pg C yr −1 with a persistent wetland carbon sink from −0.38 to −0.41 Pg C yr −1 and a upland sink from −0.82 to −0.98 Pg C yr −1 . Taken together, despite the large methane emissions from wetlands, the region is a consistent greenhouse gas sink per global warming potential (GWP) calculations irrespective of the type of wetland datasets being used. However, the use of satellite-detected wetland inundation extent estimates a smaller regional GWP sink than that estimated using static wetland datasets. Our sensitivity analysis indicates that if wetland inundation extent increases or decreases by 10% in each wetland grid cell, the regional source of methane increases 13% or decreases 12%, respectively. In contrast, the regional CO 2 sink responds with only 7–9% changes to the changes in wetland inundation extent. Seasonally, the inundated area changes result in higher summer CH 4 emissions, but lower summer CO 2 sinks, leading to lower summer negative greenhouse gas forcing. Our analysis further indicates that wetlands play a disproportionally important role in affecting regional greenhouse gas budgets given that they only occupy approximately 10% of the total land area in the region.

Environmental Research Letters↗