USGS ScienceSearch

SEARCH · USGS Science

Results for “Food Webs”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 325 records · Page 18Linked to original sources

Gear comparison study for sampling nekton in Barataria Basin marshes

This project was funded by the Louisiana Trustee Implementation Group (LA TIG) to support decisions related to investments in long-term monitoring. The LA TIG seeks to ensure long-term monitoring informs coastal restoration activities with the goal of sustaining and improving fisheries impacted by the Deepwater Horizon (DWH) Oil Spill. The project objective was to compare nekton catch across an estuarine gradient using different sampling gear with the goal of identifying trade-offs among nekton sampling approaches. To accomplish this objective, Louisiana Department of Wildlife and Fisheries (LDWF), The Water Institute of the Gulf (the Institute), Dynamic Solutions, LLC, Louisiana State University Agricultural Center (LSU AgCenter), and the U.S. Geological Survey (USGS) completed a field gear comparison study from 2018 to 2019. This work compared electrofisher and seine sampling at 12 fixed stations in Barataria Basin using data collected by LDWF. In addition, and in conjunction with LDWF monthly sampling, the same 12 fixed stations were sampled in May 2019 using a throw trap to compare nekton catch and assemblages collected with the throw trap, seine and electrofisher. LDWF has been conducting seine sampling since 1986, and seine data are used by the State of Louisiana to assess juvenile shrimp, crab and fish abundances, sizes and overall assemblages. In 2018, LDWF began conducting electrofisher sampling at 12 Barataria Basin seine stations in order to determine if the two gear types sample similar species and assemblages for potential future replacement of long-term seine sampling with electrofishing. Throw traps were included as they provide density estimates, which are ultimately the desired statistic used in modeling trophic webs, and are used in assessing habitat restoration outcomes. The project compared the nekton catch and assemblages collected using seine, electrofisher, and throw trap data from marsh edge habitats located across the estuarine gradient in Barataria Basin. Specifically, catch per unit effort (CPUE), species richness, species-specific total length (mm) distribution and nekton assemblages were compared between gear types. The first dataset was collected in May 2019 with throw trap (Appendix A), seine (LDWF data), and electrofisher (LDWF data) gear, and the second dataset (collected by LDWF) spanned 14 months of seine and electrofisher monthly sampling occurring from May 2018 through June 2019 at 12 stations in Barataria Basin. Key findings include that gear bias was not evident across the range of water quality conditions (salinity, temperature, o C, dissolved oxygen, mg L-1 , turbidity, NTU; Appendix B: scatter plots) captured during this pilot study, but differences in nekton catch per unit effort (CPUE) and assemblages were evident between gear types. However, those differences largely depended on the parameter examined. For example, the overall CPUE was highest for electrofishing, followed by seine, and then throw trap. When grass shrimp (the most abundant taxon collected) were removed from CPUE, the electrofisher and seine results were similar in CPUE. When CPUE was corrected for gear efficiency and total area sampled, the throw trap had the highest reported density of nekton sampled, followed by electrofisher and seine results. Electrofishing captured the highest number of species, which included more unique species compared to seine or throw trap catches, though all gear types captured at least one unique species. These highlight a need for caution in interpreting assemblage and density data when comparing datasets derived from different sampling methodologies. These key findings can help inform implementation and interpretation of long-term monitoring data in Louisiana as management decisions are made about coastal restoration projects to sustain and improve fisheries. There are trade-offs in selecting gear types for estuarine nekton monitoring of density, abundance, species richness, and assemblages. The table below (Table 1) summarizes some considerations when selecting gear types for long-term monitoring of estuarine nekton. In addition to biological and ecological considerations, other important considerations include cost, the labor required to conduct sampling, logistics, and potential uncertainties related to how effective each gear type is for sampling the wide variety of conditions found across Louisiana’s coastal habitats. For example, although electrofishing may capture higher CPUE, the equipment is more expensive to obtain and maintain compared to the other gear types. Most importantly, this table highlights differences in the nekton assemblages sampled by each gear type; this consideration is critical when designing the goals of a long-term monitoring program as it will inform how the data can be used and interpreted in the future. This report provides caveats, assumptions, and recommendations that can help support the Louisiana Coastal Protection and Restoration Authority (CPRA), LDWF and the LA TIG in comparing data from different gear types, and in making decisions for future monitoring. Findings from this study are limited to the range of water quality conditions occurring during these data collection events; these data and analyses could benefit from sampling across a wider range of water quality conditions, and collection of habitat structure and bottom type data which are not routinely collected but critically influence nekton. Further investigation examining how relative differences detected in key species abundances between gear types might impact ecosystem indicators and energetics in a modeled food web would provide valuable input to understand outputs of the Comprehensive Aquatic System Model for Barataria Basin, including the potential impacts of nekton monitoring decisions on food web models.

Louisiana

Carcass deposition to suppress invasive lake trout causes differential mortality of two common benthic invertebrates in Yellowstone Lake

Invasive species require management to mitigate their harmful effects on native biodiversity and ecosystem processes. However, such management can also have negative, unintended consequences on non-target taxa, ecosystem processes, and food web dynamics. In Yellowstone Lake, invasive lake trout ( Salvelinus namaycush ) have caused a decline in the native Yellowstone cutthroat trout ( Oncorhynchus clarkii bouvieri ) population. To suppress the invader, lake trout carcasses are deposited on the species’ spawning sites, causing embryo mortality by reducing dissolved oxygen as they decay. The non-target effects of carcass treatment are unknown, but benthic invertebrates may be sensitive to reductions in dissolved oxygen. Benthic invertebrate taxa have varying hypoxia tolerances; caddisflies ( Trichoptera , family Limnephilidae ) are hypoxia sensitive while amphipods Gammarus lacustris and Hyallela azteca are hypoxia tolerant. Both are widespread and abundant in Yellowstone Lake and comprise a large proportion of fish diets, so changes in their abundances could alter food web dynamics. We conducted an in situ experiment to determine if carcass deposition causes mortality in these two taxa of benthic invertebrates. The probability of mortality for caddisflies was 3.15 times higher in carcass treatments as compared to controls, while amphipod mortality did not change in response to carcass treatment. Amphipods, which contribute most significantly to fish diets, are unlikely to be reduced in response to carcass deposition, which is confined to a small fraction of the lake where lake trout spawn, limiting the possibility for lake-wide effects. We conclude that carcass deposition is unlikely to alter the availability of invertebrates as a food source for fish in Yellowstone Lake.

Wyoming

A synthesis of the biology and ecology of sculpin species in the Laurentian Great Lakes and implications for the adaptive capacity of the benthic ecosystem

The Laurentian Great Lakes have experienced recent ecosystem changes that could lead to reductions in adaptive capacity and ultimately a loss of biodiversity and production throughout the food web. Observed changes in Great Lakes benthic communities include declines of native species and widespread success of invasive species like dreissenid mussels in all but Lake Superior. Understanding the ecology of native benthic deepwater preyfish and the reasons for their declines is important for predicting future losses in adaptive capacity and diversity, as well as managing the Great Lakes ecosystem to avoid such losses. Native sculpin species ( Cottus bairdii , C. cognatus , C. ricei , Myoxocephalus thompsonii ) historically were among the most abundant of the Great Lakes native deepwater benthic preyfish community and are an important link between offshore benthic and pelagic food webs. With one exception, these species have declined in abundance throughout the Great Lakes in recent years, but relatively little is known about their biology and ecology. This review synthesizes the available knowledge for the Great Lakes sculpin species and provides suggestions for future research efforts, which include understanding reproductive ecology and spawning behavior, connectivity and dispersal of populations, early life history, and influences of interactions with native and non-native species.

Great Lakes

Marine predator surveys in Glacier Bay National Park and Preserve

Since 1999, vessel based surveys to estimate species composition, distribution and relative abundance of marine birds and mammals have been conducted along coastal and pelagic (offshore) transects in Glacier Bay, Alaska. Surveys have been conducted during winter (November-March) and summer (June). This annual report presents the results of those surveys conducted in March and June of 2001. Following completion of surveys in 2002 we will provide a final report of the results of all surveys conducted between 1999 and 2002. Glacier Bay supports diverse and abundant assemblages of marine birds and mammals. In 2001 we identified 58 species of bird, 7 species of marine mammal, and 6 species of terrestrial mammal on transects sampled during winter and summer. Of course all species are not equally abundant. Among all taxa, in both seasons, sea ducks were the numerically dominant group. In their roles as consumers and because of their generally large size, marine mammals are also likely important in the consumption of energy produced in the Glacier Bay ecosystem. Most common and abundant marine birds and mammals can be placed in either a fish based (e.g. alcids and pinnipeds), or a benthic invertebrate (e.g. sea ducks and sea otters) based food web. Distinct differences in the species composition and abundance of marine birds were observed between winter and summer surveys. Winter marine bird assemblages were dominated numerically (> 11,000; 65% of all birds) by a relatively few species of sea ducks (scoters, goldeneye, Bufflehead, Harlequin and Long-tailed ducks). The sea ducks were distributed almost exclusively along near shore habitats. The prevalence of sea ducks during the March surveys indicates the importance of Glacier Bay as a wintering area for this poorly understood group of animals that occupy a high trophic position in a principally benthic invertebrate (mussel and clam) food web. Marine mammal assemblages were generally consistent between seasons, although Humpback and Killer whales were not observed in winter 2001. Summer marine bird assemblages remained numerically dominated by sea ducks, but species composition shifted between the goldeneye whose density was 44/m 2 in winter to < 0.2/m 2 in summer, to scoters, whose density was 29/m 2 in winter to > 60/m 2 in summer. Large increases in Black-legged kittiwake, murrelet (Marbled and Kittlitz’s) and Common merganser densities were detected during summer surveys. Seasonal differences in abundance of species likely reflected differences in life history attributes (e.g. reproductive biology, foraging ecology) among species. Because of differences observed in species composition between the winter and summer, it is apparent that a single annual survey cannot accurately describe the populations of marine birds and mammals that occur in Glacier Bay. Preliminary analysis further suggests that interpretations of data resulting from this type of survey may depend to a large extent on the individual species. Because species exhibit differences in behavior, morphology, coloration, and distribution, accuracy and precision of abundance estimates likely vary among species. Confidence in survey results should be evaluated in consideration of life history and detection probabilities at the species level. However, survey results likely provide reasonable estimates of species composition and relative abundance, as well as accurate abundance estimates for those species whose detection closely approximates one.

Alaska

Chapter 11 The phosphoria formation: A model for forecasting global selenium sources to the environment

Mining of the Permian Phosphoria Formation — a marine, oil-generating, phosphatic shale — provided the selenium (Se) source implicated in the recent deaths of livestock in southeast Idaho. Field studies and the geohydrologic balance of Se in southeast Idaho confirm risk to animals from exposure to Se through leaching of mined waste shale into streams, discharge of regional drainage, and impoundment of drainage in wetland areas. Forage grown to stabilize waste rock contoured into hills or used as cross-valley fill provides an additional mechanism of Se exposure for the environment (Mackowiak et al., Chapter 19). The average Se concentration of the Meade Peak Member of the Phosphoria Formation is an order of magnitude higher than those of other exploited marine shales that have been linked to incidences of Se toxicosis via oil refining and irrigation in the western United States. The Phosphoria Formation accumulated in an environment that preserved organic matter and contributed to the formation of economic-grade phosphate and oil deposits. The addition of this phosphate-mining case study enables a comprehensive approach to the identification of marine sedimentary Se sources and a more complete range of ecotoxic field studies on which to establish the conditions and anthropogenic connections that determine uptake, release, and recycling of Se in food webs. A constructed conceptual model of Se pollution indicates that ancient organic-rich depositional marine basins, unre- stricted by age, are linked to the contemporary global distribution of Se source rocks. A global plot shows (a) the areal association of major basins hosting phosphate deposits and petroleum source rocks and (b) the importance of paleo-latitudinal setting in influencing the composition of the deposits. Given the geographic patterns, Se emerges as a contami- nant within specific regions of the globe that may limit phosphate mining, oil refining, and drainage of agricultural lands because of potential ecological risks to vulnerable food webs. Selenium also may serve as a geochemical exploration tool that signals an ancient productive biological environment.

Handbook of Exploration and Environmental Geochemi

A synthesis of patterns of environmental mercury inputs, exposure and effects in New York State

Mercury (Hg) pollution is an environmental problem that adversely affects human and ecosystem health at local, regional, and global scales—including within New York State. More than two-thirds of the Hg currently released to the environment originates, either directly or indirectly, from human activities. Since the early 1800s, global atmospheric Hg concentrations have increased by three- to eight-fold over natural levels. In the U.S., atmospheric emissions and point-source releases to waterways increased following industrialization into the mid-1980s. Since then, water discharges have largely been curtailed. As a result, Hg emissions, atmospheric concentrations, and deposition over the past few decades have declined across the eastern U.S. Despite these decreases, Hg pollution persists. To inform policy efforts and to advance public understanding, the New York State Energy Research and Development Authority (NYSERDA) sponsored a scientific synthesis of information on Hg in New York State. This effort includes 23 papers focused on Hg in atmospheric deposition, water, fish, and wildlife published in Ecotoxicology . New York State experiences Hg contamination largely due to atmospheric deposition. Some landscapes are inherently sensitive to Hg inputs driven by the transport of inorganic Hg to zones of methylation, the conversion of inorganic Hg to methylmercury, and the bioaccumulation and biomagnification along food webs. Mercury concentrations exceed human and ecological risk thresholds in many areas of New York State, particularly the Adirondacks, Catskills, and parts of Long Island. Mercury concentrations in some biota have declined in the Eastern Great Lakes Lowlands and the Northeastern Highlands over the last four decades, concurrent with decreases in water releases and air emissions from regional and U.S. sources. However, widespread changes have not occurred in other ecoregions of New York State. While the timing and magnitude of the response of Hg levels in biota varies, policies expected to further diminish Hg emissions should continue to decrease Hg concentrations in food webs, yielding benefits to the fish, wildlife, and people of New York State. Anticipated improvements in the Hg status of aquatic ecosystems are likely to be greatest for inland surface waters and should be roughly proportional to declines in atmospheric Hg deposition. Efforts that advance recovery from Hg pollution in recent years have yielded significant progress, but Hg remains a pollutant of concern. Indeed, due to this extensive compilation of Hg observations in biota, it appears that the extent and intensity of the contamination on the New York landscape and waterscape is greater than previously recognized. Understanding the extent of Hg contamination and recovery following decreases in atmospheric Hg deposition will require further study, underscoring the need to continue existing monitoring efforts.

New York

Forecasting selenium discharges to the San Francisco Bay-Delta Estuary: Ecological effects of a proposed San Luis Drain extension

Selenium discharges to the San Francisco Bay-Delta Estuary (Bay-Delta) could change significantly if federal and state agencies (1) approve an extension of the San Luis Drain to convey agricultural drainage from the western San Joaquin Valley to the North Bay (Suisun Bay, Carquinez Strait, and San Pablo Bay); (2) allow changes in flow patterns of the lower San Joaquin River and Bay-Delta while using an existing portion of the San Luis Drain to convey agricultural drainage to a tributary of the San Joaquin River; or (3) revise selenium criteria for the protection of aquatic life or issue criteria for the protection of wildlife. Understanding the biotransfer of selenium is essential to evaluating effects of selenium on Bay-Delta ecosystems. Confusion about selenium threats to fish and wildlife stem from (1) monitoring programs that do not address specific protocols necessary for an element that bioaccumulates; and (2) failure to consider the full complexity of the processes that result in selenium toxicity. Past studies show that predators are more at risk from selenium contamination than their prey, making it difficult to use traditional methods to predict risk from environmental concentrations alone. This report presents an approach to conceptualize and model the fate and effects of selenium under various load scenarios from the San Joaquin Valley. For each potential load, progressive forecasts show resulting (1) water-column concentration; (2) speciation; (3) transformation to particulate form; (4) particulate concentration; (5) bioaccumulation by invertebrates; (6) trophic transfer to predators; and (7) effects on those predators. Enough is known to establish a first-order understanding of relevant conditions, biological response, and ecological risks should selenium be discharged directly into the North Bay through a conveyance such as a proposed extension of the San Luis Drain. The approach presented here, the Bay-Delta selenium model, determines the mass, fate, and effects of selenium released to the Bay-Delta through use of (1) historical land-use, drainage, alluvial-fill, and runoff databases; (2) existing knowledge concerning biogeochemical reactions and physiological parameters of selenium (e.g., speciation, partitioning between dissolved and particulate forms, and bivalve assimilation efficiency); and (3) site-specific data mainly from 1986 to 1996 for clams and bottom-feeding fish and birds. Selenium load scenarios consider effluents from North Bay oil refineries and discharges of agricultural drainage from the San Joaquin Valley to enable calculation of (a) a composite freshwater endmember selenium concentration at the head of the estuary; and (b) a selenium concentration at a selected seawater location (Carquinez Strait) as a foundation for modeling. Analysis of selenium effects also takes into account the mode of conveyance for agricultural drainage (i.e., the San Luis Drain or San Joaquin River); and flows of the Sacramento River and San Joaquin River on a seasonal or monthly basis. Load scenarios for San Joaquin Valley mirror predictions made since 1955 of a worsening salt (and by inference, selenium) build-up exacerbated by an arid climate and massive irrigation. The reservoir of selenium in the San Joaquin Valley is sufficient to provide loading at an annual rate of approximately 42,500 pounds of selenium to a Bay-Delta disposal point for 63 to 304 years at the lower range of projections presented here, even if influx of selenium from the California Coast Ranges could be curtailed. Disposal of wastewaters on an annual basis outside of the San Joaquin Valley may slow the degradation of valley resources, but drainage alone cannot alleviate the salt and selenium build-up in the San Joaquin Valley, at least within a century. Load scenarios also show the different proportions of selenium loading to the Bay-Delta. Oil refinery loads from 1986 to 1992 ranged from 8.5 to 20 pounds of selenium per day; with treatment and cleanup, loads decreased to 3.0 pounds of selenium per day in 1999. In contrast, San Joaquin Valley agricultural drainage loads disposed of in a San Luis Drain extension could range from 45 to 117 pounds of selenium per day across a set of historical and future conditions. Components of this valley-wide load include five source subareas (i.e., Grassland, Westlands, Tulare, Kern, and Northern) defined by water and drainage management. Loads vary per subarea mainly because of proximity of the subarea to geologic sources of selenium and irrigation history. Loads from the Sacramento River, depending on flow conditions, range from 0.8 to 10 pounds of selenium per day. Loads from the San Joaquin River vary depending on restoration and flow conditions, which are considered. A consistent picture of ecological risk emerges under modeled selenium discharges from a proposed San Luis Drain extension. The threat to the estuary is greatest during low flow seasons and critically dry years. Where selenium undergoes reactions typical of low flow or longer residence time, highly problematic bioaccumulation in prey (food) is forecast. Surf scoter, greater and lesser scaup, and white sturgeon appear to be most at risk because these Bay-Delta predators feed on deposit and filter-feeding bivalves. Recent findings add Sacramento splittail and Dungeness crab to that list. During the low flow season of critically dry years, forecasted selenium concentrations in water, particulate matter, prey (diet), and predator tissue exceed guidelines with a high certainty of producing adverse effects under the most likely load scenario from a proposed San Luis Drain extension. High flows afford some protection under certain conditions in modeled San Joaquin River scenarios. However, meeting a combined goal of releasing a specific load during maximum flows and keeping selenium concentrations in the river below a certain objective to protect against bioaccumulation may not always be attainable. Management of the San Joaquin River on a constant concentration basis also could create problematic bioaccumulation during a wet year, especially during the low flow season, because high flows translate to high loads that are not always offset by seasonal river inflows. Prior to refinery cleanup, selenium contamination was sufficient to threaten reproduction in key species within the Bay-Delta ecosystems and human health advisories were posted based on selenium concentrations in tissues of diving ducks. During this time, selenium concentrations in the Bay-Delta were well below the most stringent recommended water quality criterion [1 microgram per liter (1 µg/L)]. Enhanced biogeochemical transformations to bioavailable particulate selenium and efficient bioaccumulation by bivalves characterized the system. If these biogeochemical conditions continue to prevail and agricultural selenium sources replace or exceed refinery sources, ecological forecasts suggest the risk of adverse effects will be difficult to eliminate under an out-of-valley resolution to the selenium problem. The Bay-Delta selenium model presented here is a systematic approach for conducting forecasts of the ecological effects from selenium on aquatic food webs. It is a new tool that links and models the major processes leading from loads through consumer organisms to predators. It also is a feasible approach for site-specific analysis and could provide a framework for developing new protective selenium foodweb guidelines and predator criteria. Model components that help ensure understanding ecosystems and the basis of environmental protection are (1) contaminant concentrations and speciation in sources, such as particulate material, that most influence bioavailability; (2) bioaccumulation models that calculate concentrations in diet, specifically in bivalves of the Bay-Delta that act as sensitive indicators of selenium contamination; (3) food-web type that determines what animals are threatened and when; and (4) multiple media concentrations (water, particulate material, and tissue of prey and predators) that, in-combination, determine risk or hazard.

California

Impact of wildfire on levels of mercury in forested watershed systems: Voyageurs National Park, Minnesota

Atmospheric deposition of mercury to remote lakes in mid-continental and eastern North America has increased approximately threefold since the mid-1800s (Swain and others, 1992; Fitzgerald and others, 1998; Engstrom and others, 2007). As a result, concerns for human and wildlife health related to mercury contamination have become widespread. Despite an apparent recent decline in atmospheric deposition of mercury in many areas of the Upper Midwest (Engstrom and Swain, 1997; Engstrom and others, 2007), lakes in which fish contain levels of mercury deemed unacceptable for human consumption and possibly unacceptable for fish-consuming wildlife are being detected with increasing frequency. In northern Minnesota, Voyageurs National Park (VNP) (fig. 1) protects a series of southern boreal lakes and wetlands situated on bedrock of the Precambrian Canadian Shield. Mercury contamination has become a significant resource issue within VNP as high concentrations of mercury in loons, bald eagle eaglets, grebes, northern pike, and other species of wildlife and fish have been found. The two most mercury-contaminated lakes in Minnesota, measured as methylmercury in northern pike ( Esox lucius ), are in VNP. Recent multidisciplinary U.S. Geological Survey (USGS) research demonstrated that the bulk of the mercury in lake waters, soils, and fish in VNP results from atmospheric deposition (Wiener and others, 2006). The study by Wiener and others (2006) showed that the spatial distribution of mercury in watershed soils, lake waters, and age-1 yellow perch ( Perca flavescens ) within the Park was highly variable. The majority of factors correlated for this earlier study suggested that mercury concentrations in lake waters and age-1 yellow perch reflected the influence of ecosystem processes that affected within-lake microbial production and abundance of methylmercury (Wiener and others, 2006), while the distribution of mercury in watershed soils seemed to be partially dependent on forest disturbance, especially the historic forest fire pattern (Woodruff and Cannon, 2002). Forest fire has an essential role in the forest ecosystems of VNP (Heinselman, 1996). Because resource and land managers need to integrate both natural wildfire and prescribed fire in management plans, the potential influence of fire on an element as sensitive to the environment as mercury becomes a critical part of their decisionmaking. A number of recent studies have shown that while fire does have a significant impact on mercury at the landscape level, the observed effects of fire on aquatic environments are highly variable and unpredictable (Caldwell and others, 2000; Garcia and Carrigan, 2000; Kelly and others, 2006; Nelson and others, 2007). Caldwell and others (2000) described an increase in methylmercury in reservoir sediments resulting from mobilization and transport of charred vegetative matter following a fire in New Mexico. Krabbenhoft and Fink (2000) attributed increases in total mercury concentrations in young-of-the-year fish in the Florida Everglades to release of mercury resulting from peat oxidation following fires. A fivefold increase in whole-body mercury accumulation by rainbow trout ( Oncorhynchus mykiss ) following a fire in Alberta, Canada, apparently resulted from increased nutrient concentrations that enhanced productivity and restructured the food web of a lake within the fire’s burn footprint (Kelly and others, 2006). For this study, we determined the short-term effects of forest fire on mercury concentrations in terrestrial and aquatic environments in VNP by comparing and contrasting mercury concentrations in forest soils, lake waters, and age-1 yellow perch for a burned watershed and an adjacent lake, with similar samples from watersheds and lakes with no fire activity (control watersheds and lakes). The concentration of total mercury in whole, 1-year-old yellow perch serves as a good biological indicator for monitoring trends in methylmercury concentrations in food webs of lakes in North America (Wiener and others, 2007). With a limited gape, age-1 yellow perch that hatched the previous year and resided in a lake for 1 year feed largely on zooplankton and small benthic invertebrates. Thus, age-1 yellow perch provide a baseline for methylmercury concentrations for individual lakes that can be compared across spatial areas. The nine appendixes that accompany this report contain the complete datasets for soils, lake waters, and age-1 yellow perch collected for this study. This report uses data from these three media to provide a framework for evaluating short-term effects of fire on mercury in forested soils and possible effects of the mobilization of mercury from soils on lake water quality and aquatic health.

Minnesota

Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm water to fuel blooms of cryptophyte algae, diatoms, green and blue-green algae in the low-gradient, slow-moving reservoir reach of the lower river. Algae in the Tualatin River generally drift with the water rather than attach to the river bottom as a result of moderate water depths, slightly elevated turbidity caused by suspended colloidal material, and dominance of silty substrates. Growth of algae occurs as if on a “conveyor belt” of streamflow, a dynamic system that is continually refreshed with inflowing water. Transit through the system can take as long as 2 weeks during the summer low-flow period. Photosynthetic production of DO during algal blooms is important in offsetting oxygen consumption at the sediment-water interface caused by the decomposition of organic matter from primarily terrestrial sources, and the absence of photosynthesis can lead to low DO concentrations that can harm aquatic life. The periods with the lowest DO concentrations in recent years (since 2003) typically occur in August following a decline in algal abundance and activity, when DO concentrations often decrease to less than State standards for extended periods (nearly 80 days). Since 2003, algal populations have tended to be smaller and algal blooms have terminated earlier compared to conditions in the 1990s, leading to more frequent declines in DO to levels that do not meet State standards. This study was developed to document the current abundance and species composition of phytoplankton in the Tualatin River, identify the possible causes of the general decline in algae, and evaluate hypotheses to explain why algal blooms diminish in midsummer. Plankton and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer. Meteorological, streamflow, turbidity, water temperature, and conductance conditions in the Tualatin River during the 2006–08 summer seasons were not atypical. Natural flow comprised the majority (70–80 percent) of flow each year during spring, but then reduced to 38–40 percent during midsummer when WWTF effluent—which contributed as much as 36 percent—and flow augmentation releases comprised a greater fraction of the flow. Summer 2008 was unusual, however, in the prolonged influence from the Wapato Lake agricultural area near Gaston in the upper part of the basin. The previous winter flooding and levee breach at Wapato Lake caused a much greater area of inundation. As a result, drainage from this area continued into July, much later than normal. A subsequent algal bloom in Wapato Lake then seeded the upper Tualatin River, and this drainage had a profound effect on the downstream plankton community. A large blue-green algae bloom developed—the largest in recent memory—prompting a public health advisory for recreational contact for about two weeks. Algal growths and surface blooms are a common feature of the Tualatin River. Most of the dominant algae have growth forms and morphologies that are well suited for planktonic life, employing spines and gas vacuoles to resist settling, forming colonies, and producing mucilage (or toxins) to resist zooplankton grazing. In 2006–08, 143 algal taxa were identified in 117 main-stem samples; diatoms and green algae were more diverse than blue-green, golden, and cryptophyte algae, although these later groups sometimes dominated the overall volumetric abundance (biovolume). The most frequently occurring taxa, occurring in 97–99 percent of samples, were flagellated cryptophytes Cryptomonas erosa and Rhodomonas minuta. Other important algal taxa included centric diatoms Stephanodiscus, Cyclotella, and Melosira species and colonial green algae Scenedesmus and Actinastrum. These taxa comprised the majority of the algal biovolume during much of the growing season. A general seasonal trend in the phytoplankton assemblages was observed, with dominance by filamentous centric diatoms Stephanodiscus and Melosira in spring and early summer, and flagellated cryptophytes and green algae, particularly Chlamydomonas sp., in late-summer; or, in 2008, dominance by blue-green algae Anabaena flos-aquae and Aphanizomenon flos-aquae during the Wapato Lake bloom event. There were 99 zooplankton taxa identified from the Tualatin River in 2006–08, composed primarily of cladocerans, copepods, and rotifers. A seasonal increase in zooplankton abundance was observed in early summer just as or shortly after the phytoplankton population began to increase, with populations growing to 15,000−120,000 organisms per cubic meter in the lower river. Zooplankton abundance showed a predictable and distinct longitudinal downstream increase, particularly downstream of Highway 99W (RM 11.6). Although grazing rates were not measured, the data suggest that, at times, zooplankton grazing may affect algal abundance and species composition in the Tualatin River, with diatoms becoming relatively less abundant and flagellated cryptophytes and green algae relatively more abundant during periods when zooplankton densities were highest. Multivariate statistical analyses identified soluble reactive phosphorus (SRP), natural flow, flow augmentation, and WWTF effluent as important factors influencing Tualatin River phytoplankton populations, with zooplankton density (particularly rotifers and copepods), specific conductance, chloride, and water temperature also having an important influence. Although SRP was highly correlated with the plankton communities, that correlation was likely the result of high or low algal activity (uptake) as SRP concentrations were often reduced to low levels during blooms. While previous studies have already established that phosphorus, among other factors such as flow, places a theoretical cap on the size of the phytoplankton population in the river, sometimes algal declines occur when SRP concentrations are apparently sufficient. To identify alternative causal factors, additional analyses were performed without SRP to focus on other water-quality parameters, zooplankton density, and flow factors. Considering data for all 3 years and including just those samples from the lower Tualatin River not affected by the 2008 Wapato Lake drainage event, three factors (percentage of reservoir flow augmentation, total natural flow, and rotifer density) best explained variations in the phytoplankton assemblages. Analyses focusing on the possible causes of algal declines included the above multivariate analyses, scrutiny of 10 specific instances of declines in algal populations during 2003–08 including several bloom–crash sequences, and analyses of historic routine watershed monitoring data from Clean Water Services. Six factors were hypothesized to be important in causing bloom crashes or impeding blooms from rebounding in August: (1) light limitation from cloudy weather, (2) a reduction in the plankton inocula or “seed” entering the lower river from upstream sources, (3) increased summer streamflows, (4) changes in the dominant sources of flow as the percentage of flow augmentation and WWTF discharges have increased, (5) zooplankton grazing, and (6) low concentrations of bioavailable phosphorus (<0.015 milligram per liter). All of these hypotheses are supported in some fashion by the available data and statistical analyses. Zooplankton grazing, short-term declines in photosynthesis from cloudy weather, total flow as it affects residence time, and the dominant source of flow are primary factors responsible for the low-DO events caused by declines in algae in the lower Tualatin River during late summer. Cloudy weather and increased turbidity are known to inhibit algal growth in the Tualatin River, and slight increases in turbidity in recent years may be a problem. Upstream sources of algae are critical in determining the characteristics and size of downstream populations, as illustrated by the Wapato Lake bloom in 2008, but more data are needed from upstream to fully define the importance of this connection. The sources of flow, through their differential contribution of plankton inocula (quality and amount), were, at times, important factors affecting phytoplankton populations. While SRP concentrations were often most highly correlated with phytoplankton species community, the bioavailability of phosphorus is still somewhat unknown and there are several sources to consider. Preliminary bioassay tests suggested that while treated wastewater effluent may stimulate algae at 30 percent concentrations, negative effects (or decreased stimulation) on Chl-a and DO production may occur at concentrations of 50 percent. Targeted data collection and future research will be needed to further understand the importance of these factors on Tualatin River phytoplankton. While the data and analysis completed for this report provide insights into future research and monitoring that would be useful to continue, additional monitoring of turbidity, Chl-a, and plankton abundance and species composition in the upper part of the basin would enhance our understanding of plankton dynamics and factors affecting phytoplankton abundance in the lower river. Assessment of the key upstream sources of algal inocula via surveys of the major flow sources as well as tributaries and wetlands would provide useful information for the management of river water quality. Other studies that could prove useful for developing management strategies include targeted experiments to evaluate the bioavailability of phosphorus from a variety of sources. New research on phytoplankton–zooplankton interactions, and studies of planktivorous fish, might also provide insight about food web dynamics and potential “top-down” effects of fish predation on the plankton communities. In addition, further development of neural-network or other water-quality models would help to evaluate management strategies and provide forecasts of water-quality conditions. Finally, periodic future reassessments of the available data with the multivariate statistical tools used in this study would be helpful to assess whether and how plankton communities are changing, and to continue to shed light on the importance of factors shaping the plankton. Although certain types and sizes of algal blooms are undesirable, minimum phytoplankton populations are an important part of aquatic food webs and are needed to maintain healthy levels of DO in the river. By understanding the sources, characteristics, causal factors, and responses of the plankton communities, management strategies can be developed to improve DO conditions in the lower Tualatin River during the important summer low-flow period.

Oregon

Trophic magnification of organic chemicals: A global synthesis

Production of organic chemicals (OCs) is increasing exponentially, and some OCs biomagnify through food webs to potentially toxic levels. Biomagnification under field conditions is best described by trophic magnification factors (TMFs; per trophic level change in log-concentration of a chemical) which have been measured for more than two decades. Syntheses of TMF behavior relative to chemical traits and ecosystem properties are lacking. We analyzed >1500 TMFs to identify OCs predisposed to biomagnify and to assess ecosystem vulnerability. The highest TMFs were for OCs that are slowly metabolized by animals (metabolic rate k M < 0.01 day &ndash;1 ) and are moderately hydrophobic (log K OW 6&ndash;8). TMFs were more variable in marine than freshwaters, unrelated to latitude, and highest in food webs containing endotherms. We modeled the probability that any OC would biomagnify as a combined function of K OW and k M . Probability is greatest (&sim;100%) for slowly metabolized compounds, regardless of K OW , and lowest for chemicals with rapid transformation rates ( k M > 0.2 day &ndash;1 ). This probabilistic model provides a new global tool for screening existing and new OCs for their biomagnification potential.

Environmental Science & Technology

Ecological tracers reveal resource convergence among prey fish species in a large lake ecosystem

1. We measured stable isotopes of carbon (&delta; 13 C) and nitrogen (&delta; 15 N) and fatty acid profiles in Lake Ontario alewife ( Alosa pseudoharengus ), rainbow smelt ( Osmerus mordax ), slimy sculpin ( Cottus cognatus ) and round goby ( Neogobius melanostomus ) collected from 1982 to 2008 to investigate how temporal variability in these ecological tracers can relate to ecosystem-level changes associated with the establishment of highly invasive dreissenid mussels. 2. Prey fish &delta; 15 N values remained relatively constant, with only slimy sculpin exhibiting a temporal increase in &delta; 15 N. In contrast, &delta; 13 C values for alewife, rainbow smelt and, especially, slimy sculpin became less negative over time and were consistent with the benthification of the Lake Ontario food web associated with dreissenids. 3. Principal components analysis revealed higher contributions of 14:0 and 16:1n-7 fatty acids and increasingly negative &delta; 13 C values in older samples in agreement with the greater historical importance of pelagic production for alewife, rainbow smelt and slimy sculpin. 4. Temporal declines in fatty acid unsaturation indices and &Sigma;n-3/&Sigma;n-6 ratios, and also increased 24:0/14:0 ratios for alewife, rainbow smelt and slimy sculpin, indicated the increasing importance of nearshore production pathways for more recently collected fish and resulted in values more similar to those for round goby. 5. These results indicate a temporal convergence of the food niche, whereas food partitioning has historically supported the coexistence of prey fish species in Lake Ontario. This convergence is consistent with changes in food-web processes associated with the invasion of dreissenid mussels.

Lake Ontario

Long-term impacts of invasive species on a native top predator in a large lake system

1. Declining abundances of forage fish and the introduction and establishment of non-indigenous species have the potential to substantially alter resource and habitat exploitation by top predators in large lakes. 2. We measured stable isotopes of carbon (δ 13 C) and nitrogen (δ 15 N) in field-collected and archived samples of Lake Ontario lake trout ( Salvelinus namaycush ) and five species of prey fish and compared current trophic relationships of this top predator with historical samples. 3. Relationships between δ 15 N and lake trout age were temporally consistent throughout Lake Ontario and confirmed the role of lake trout as a top predator in this food web. However, δ 13 C values for age classes of lake trout collected in 2008 ranged from 1.0 to 3.9‰ higher than those reported for the population sampled in 1992. 4. Isotope mixing models predicted that these changes in resource assimilation were owing to the replacement of rainbow smelt ( Osmerus mordax ) by round goby ( Neogobius melanostomus ) in lake trout diet and increased reliance on carbon resources derived from nearshore production. This contrasts with the historical situation in Lake Ontario where δ 13 C values of the lake trout population were dominated by a reliance on offshore carbon production. 5. These results indicate a reduced capacity of the Lake Ontario offshore food web to support the energetic requirements of lake trout and that this top predator has become increasingly reliant on prey resources that are derived from nearshore carbon pathways.

Freshwater Biology

Enhanced susceptibility of methylmercury bioaccumulation into seston of the Laurentian Great Lakes

Mercury concentrations in the Laurentian Great Lakes waters are among the lowest reported in the literature, while game fish concentrations approach consumption advisory limits, particularly in Lakes Superior, Huron, and Michigan, indicating efficient methylmercury transfer from water to game fish. To determine if increased transfer efficiency is evident within the lower food web, we measured (2010–2018) mercury and dissolved organic carbon (DOC) in water, and in size-sieved seston, dietary tracers (carbon and nitrogen isotope ratios), phytoplankton methylmercury bioaccumulation, and methylmercury biomagnification between increasing seston size fractions. We observed consistently low filter-passing methylmercury (<0.010 ng L –1 ) and comparatively variable DOC (1.1 to 3.4 mg L –1 ) concentrations. Methylmercury biomagnification factors between size-sieved seston were similar between lakes. Bioaccumulation factors in phytoplankton were among the highest in the literature (log 5.5 to 6.1), exceeding those in oceans, smaller lakes, and streams, and was influenced by DOC. Higher bioaccumulation rates increase the susceptibility of methylmercury accumulation into the food web. Because mercury is dominantly delivered to the Great Lakes through the atmosphere and the biota therein is highly susceptible to methylmercury uptake, we propose that the Laurentian Great Lakes are excellent sentinels to trace the success of efforts to decrease global mercury emissions (e.g., Minamata Treaty) in the future.

Environmental Science and Technology

Exposure pathways and biological receptors: baseline data for the canyon uranium mine, Coconino County, Arizona

Recent restrictions on uranium mining within the Grand Canyon watershed have drawn attention to scientific data gaps in evaluating the possible effects of ore extraction to human populations as well as wildlife communities in the area. Tissue contaminant concentrations, one of the most basic data requirements to determine exposure, are not available for biota from any historical or active uranium mines in the region. The Canyon Uranium Mine is under development, providing a unique opportunity to characterize concentrations of uranium and other trace elements, as well as radiation levels in biota, found in the vicinity of the mine before ore extraction begins. Our study objectives were to identify contaminants of potential concern and critical contaminant exposure pathways for ecological receptors; conduct biological surveys to understand the local food web and refine the list of target species (ecological receptors) for contaminant analysis; and collect target species for contaminant analysis prior to the initiation of active mining. Contaminants of potential concern were identified as arsenic, cadmium, chromium, copper, lead, mercury, nickel, selenium, thallium, uranium, and zinc for chemical toxicity and uranium and associated radionuclides for radiation. The conceptual exposure model identified ingestion, inhalation, absorption, and dietary transfer (bioaccumulation or bioconcentration) as critical contaminant exposure pathways. The biological survey of plants, invertebrates, amphibians, reptiles, birds, and small mammals is the first to document and provide ecological information on .200 species in and around the mine site; this study also provides critical baseline information about the local food web. Most of the species documented at the mine are common to ponderosa pine Pinus ponderosa and pinyon&ndash;juniper Pinus&ndash;Juniperus spp. forests in northern Arizona and are not considered to have special conservation status by state or federal agencies; exceptions are the locally endemic Tusayan flameflower Phemeranthus validulus, the long-legged bat Myotis volans, and the Arizona bat Myotis occultus. The most common vertebrate species identified at the mine site included the Mexican spadefoot toad Spea multiplicata, plateau fence lizard Sceloporus tristichus, violetgreen swallow Tachycineta thalassina, pygmy nuthatch Sitta pygmaea, purple martin Progne subis, western bluebird Sialia mexicana, deermouse Peromyscus maniculatus, valley pocket gopher Thomomys bottae, cliff chipmunk Tamias dorsalis, black-tailed jackrabbit Lepus californicus, mule deer Odocoileus hemionus, and elk Cervus canadensis. A limited number of the most common species were collected for contaminant analysis to establish baseline contaminant and radiological concentrations prior to ore extraction. These empirical baseline data will help validate contaminant exposure pathways and potential threats from contaminant exposures to ecological receptors. Resource managers will also be able to use these data to determine the extent to which local species are exposed to chemical and radiation contamination once the mine is operational and producing ore. More broadly, these data could inform resource management decisions on mitigating chemical and radiation exposure of biota at high-grade uranium breccia pipes throughout the Grand Canyon watershed.

Arizona

Adding the ocean to the study of seabirds: A brief history of at-sea seabird research

We review the history of how research directed towards marine ornithology has led to an appreciation of seabirds as highly specialized marine organisms. Beginning with R. C. Murphy (Pacific), V. C. Wynne-Edwards (Atlantic), and associates in the early 1900s, the research approach grew from an emphasis on seabird single-species ecology to an appreciation of interacting species assemblages and finally to seabirds being considered as important components of marine food webs. After a slow, drawn-out beginning, the initial main impetus for developing the field was a need to map seabird abundance and distribution tied to understanding impacts of continental shelf resource exploitation. Coalescing during the 1970s to 1980s to facilitate this line of research were 6 factors: (1) ability to identify birds at sea; (2) standardization of techniques to quantify abundance; (3) resources and techniques for mapping; (4) appreciation of how scale affects seabird relationships to hydrographic features and patchy prey; (5) development of computing power and appropriate statistics; and (6) seabird biologists becoming embedded in, as well as organizing, multidisciplinary marine research projects. Future advances in understanding the role of seabirds in marine food webs will be made by seabird biologists participating in multidisciplinary projects using grid-like surveys relative to oceanographic features in combination with instrumentation that reveals the finer details of seabird foraging behaviors.

Marine Ecology Progress Series

Revisiting Paine’s 1966 sea star removal experiment, the most-cited empirical article in the American Naturalist

&ldquo;Food Web Complexity and Species Diversity&rdquo; (Paine 1966) is the most-cited empirical article published in the American Naturalist . In short, Paine removed predatory sea stars ( Pisaster ochraceus ) from the rocky intertidal and watched the key prey species, mussels ( Mytilus californianus ), crowd out seven subordinate primary space-holding species. However, because these mussels are a foundational species, they provide three-dimensional habitat for over 300 associated species inhabiting the mussel beds; thus, removing sea stars significantly increases community-wide diversity. In any case, most ecologists cite Paine (1966) to support a statement that predators increase diversity by interfering with competition. Although detractors remained skeptical of top-down effects and keystone concepts, the paradigm that predation increases diversity spread. By 1991, &ldquo;Food Web Complexity and Species Diversity&rdquo; was considered a classic ecological paper, and after 50 years it continues to influence ecological theory and conservation biology.

American Naturalist

Potential shifts in zooplankton community structure in response to changing ice regimes and hydrologic connectivity

Changing Arctic climate may alter freshwater ecosystems as a result of warmer surface waters, longer open-water periods, reduced wintertime lake ice growth, and altered hydrologic connectivity. This study aims to characterize zooplankton community composition and size structure in the context of hydrologic connectivity and ice regimes in Arctic lakes. Between 2011 and 2016, we sampled the phytoplankton, zooplankton, and fish communities from a set of representative lakes on the Arctic Coastal Plain (ACP) of northern Alaska to determine potential food web responses to changing Arctic ecosystems. Multivariate analyses showed that time from ice-out had a strong influence on zooplankton community structure and that seasonal succession of zooplankton differed between lakes with varying hydrologic connectivity. Trends were observed suggesting that large-bodied zooplankton ( Daphnia , calanoid copepods) may be more prevalent in poorly connected lakes with low fish diversity. Large-bodied zooplankton displayed higher biomass in lakes with high occurrences of bedfast ice, while small-bodied zooplankton ( Bosmina , rotifers) displayed highest biomass in deeper lakes with low occurrences of bedfast ice. Our results contribute to limited knowledge of zooplankton in remote lakes of the ACP and suggest that the anticipated changes to aquatic ecosystems in the Arctic may include energetically less efficient plankton food webs.

Alaska

Presence and biomagnification of organochlorine chemical residues in oxbow lakes of northeastern Louisiana

Ninety-eight samples of 16 species of animals were collected at Lake Providence, 88 samples of 15 species at Lake Bruin, and 21 samples of 5 species at Lake St. John, Louisiana, between 15 July and 25 September 1980. Residues of 13 organochlorine compounds were identified in these samples. Substantial concentrations of many of these compounds throughout the food webs of all three lakes showed that the lakes act as sumps, accumulating residues from nearby agricultural land. DDT and its metabolites (DDE, TDE, and DDMU), toxaphene, and polychlorobiphenyls (PCBs) were the principal Organochlorine residues detected. With few exceptions, biomagnification of the principal residues was clearly illustrated. Tertiary consumers such as green-backed heron ( Butorides striatus ), snakes, spotted gar ( Lepisosteus oculatus ), and largemouth bass ( Micropterus salmoides ) contained the highest residues. Bluegill ( Lepomis macrochims ), blacktail shiner ( Notopis venustus ), yellow-crowned night-heron ( Nycticorax violaceus ), and other secondary consumers contained lower levels of residues. Primary consumers, crayfish ( Orconectes lancifer ) and threadfin shad ( Dorosoma petenense ), contained relatively low residue levels of most of the compounds. Frogs contained lower residue levels than expected based on their position in the food web. It is suggested that residue levels in immature green-backed herons and one or more of the longer-lived predators such as snakes, gars, or largemouth bass could be monitored to evaluate levels of Organochlorine chemical contaminants in aquatic habitats.

Louisiana