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USGS2008

Fish passage in a western Iowa stream modified by grade control structures

Grade control structures (GCSs) are commonly used in streams of western Iowa to control bank erosion and channel headcutting but may be barriers to fish passage. From May 2002 to May 2006, we used mark-recapture methods to evaluate fish passage over a total of five GCSs, ranging in slope (run : rise) from 13:1 to 18:1 in Turkey Creek, Cass County, Iowa. Three structures, over which limited fish movement was documented from 2002 to 2004, were modified in the winter of 2004-2005 to facilitate fish passage. Before modification, the majority of recaptured fish were recaptured at the station where they were originally marked; only 1% displayed movement between sites and either upstream or downstream over a GCS. After modification fish passage improved, 14% of recaptured fish displayed movement either upstream or downstream over a GCS. Individuals of four target species - channel catfish Ictalurus punctatus, yellow bullhead Ameiurus natalis, black bullhead A. melas, and creek chub Semotilus atromaculatus - passed over at least one modified structure. The majority of documented movements over GCSs were in the upstream direction and occurred in late spring and early summer, when streamflow was relatively high. Although we documented low numbers of fish passing both upstream and downstream over GCSs, these structures are probably barriers to fish movement during periods of low flow and when there is a structural failure, such as in-channel movement of riprap. Grade control structures are pervasive in western Iowa streams; nearly every low-order stream contains at least one instream structure. To sustain fish populations, management efforts should focus on constructing or modifying GCSs to allow fish passage. ?? Copyright by the American Fisheries Society 2008.

North American Journal of Fisheries Management↗

USGS2023

Evaluation of threatened, endangered, and rare fish species and communities of the St. Lawrence River and its tributaries in the United States

Biodiversity is responsible for important ecological processes like productivity and ecosystem stability, and rare species are a major component of biodiversity. Rarity increases a species' vulnerability to disturbances and also makes them difficult to study. Globally, species of freshwater systems are some of the most threatened, and evaluation of rare freshwater species and their habitats is needed to help preserve natural flexibility and ecological function. We conducted an analysis of full fish communities of the upper St. Lawrence River and its major US tributaries, with the goals of determining species locations and abundances, associated environmental conditions, the distribution of distinct fish assemblages across the landscape (with emphasis on communities supporting rare species), and potential threats. From 2009 to 2015, the US Geological Survey (USGS) and Saint Regis Mohawk Tribe (SRMT) worked together using standardized methods to collect community samples within 4 different aquatic realms (shallow and deep lentic, and small and large lotic systems) and determine species-specific fish abundances, frequencies of occurrence, and associated habitat signatures and spatial distributions. Distinct fish assemblages and associated habitat conditions were objectively identified by multivariate and hypothesis-testing methods. We used a geographic information system (GIS) to spatially associate habitat, biotic, and landscape attributes within each stream reach throughout the study area, facilitating quantification of distribution patterns. Comparisons with historical data provided estimates of loss or gain of threatened and endangered species (T&E) colonies. We developed a disturbance index to highlight potential threats to aquatic species. More than 140,000 fishes of 87 species were collected from a total of 1140 sample sites, covering 278 stream reaches, including the endangered Notropis anogenus (Pugnose Shiner), and threatened Hiodon tergisus (Mooneye), Etheostoma pellucidum (Eastern Sand Darter), and Acipenser fulvescens (Lake Sturgeon). We identified 50 distinct fish assemblages differing in species composition, abundance, and/or diversity, but only 13 of those assemblages included a T&E species. The rareness, extent, and patchiness of fish assemblages created a mosaic of fish communities across the landscape, from headwaters to the mainstem of the St. Lawrence River. Comparisons with historic surveys (1978–2008) showed a stable number of T&E species colonies or an increase for some species. The geographic distribution of multimetric disturbance index values showed where combinations of disturbances to fish habitats might affect rare fish species and aquatic communities in the region. The species–habitat associations and fish assemblage distributions can be used for evaluation of species, communities, or habitats that may need protection or restoration.

St. Lawrence River study area↗

USGS2003

Mercury effects on predator avoidance behavior of a forage fish, golden shiner (Notemigonus crysoleucas)

Mercury contamination of fish is widespread in North America and has resulted in the establishment of fish consumption advisories to protect human health, However, the effects of mercury exposure to fish have seldom been investigated. We examined the effects of dietary mercury exposure at environmental levels in a common forage species, golden shiner (Notemigonus crysoleucas). Fish were fed either an unaltered diet (12 ng/g wet wt methylmercury [MeHg] as Hg), a low-Hg diet (455 ng/g Hg), or a high-Hg diet (959 ng/g Hg). After 90 d mean fish whole-body total Hg concentrations were 41, 230, and 518 ng/g wet wt, respectively, which were within the range of concentrations found in this species in northern U.S. lakes. There were no mortalities or differences in growth rate among groups. Groups of fish from each treatment were exposed to a model avian predator and their behavioral response videotaped for analysis. Brain acetylcholinesterase (AChE) activity was determined in fish after behavioral testing. Fish fed the high-Hg diet had significantly greater shoal vertical dispersal following predator exposure, took longer to return to pre-exposure activity level, and had greater shoal area after return to pre-exposure activity than did the other treatments, all of which would increase vulnerability of the fish to predation. There were no differences in brain AChE among treatments. We conclude that mercury exposure at levels currently occurring in northern United States lakes alters fish predator-avoidance behavior in a manner that may increase vulnerability to predation. This finding has significant implications for food chain transfer of Hg and Hg exposure of fish predators.

Environmental Toxicology and Chemistry↗

USGS1996

Episodic acidification of small streams in the northeastern United states: Effects on fish populations

As part of the Episodic Response Project (ERP), we studied the effects of episodic acidification on fish in 13 small streams in the northeastern United States: four streams in the Adirondack region of New York, four streams in the Catskills, New York, and five streams in the northern Appalachian Plateau, Pennsylvania. In situ bioassays with brook trout (Salvelinus fontinalis) and a forage fish species (blacknose dace (Rhinichthys atratulus), mottled sculpin (Cottus bairdi), or slimy sculpin (Cottus cognatus), depending on the region) measured direct toxicity. Movements of individual brook trout, in relation to stream chemistry, were monitored using radiotelemetry. Electrofishing surveys assessed fish community status and the density and biomass of brook trout in each stream. During low flow, all streams except one had chemical conditions considered suitable for the survival and reproduction of most fish species (median pH 6.0-7.2 during low flow; inorganic Al < 60 μg/L). ERP streams with suitable conditions during low flow, but moderate-to-severe episodic acidification during high flow, had higher fish mortality in bioassays, net down-stream movement of brook trout during events, and lower brook trout density and biomass compared to nonacidic streams, and lacked acid-sensitive fish species (blacknose dace and sculpin). Movement of trout into refugia (areas with higher pH and lower Al) during episodes partially mitigated the adverse effects of episodes. Recolonization from alkaline tributaries or microhabitats can maintain low densities of fish in streams that experience severe acidic episodes, but it is not sufficient to sustain fish densities and community composition at levels expected in the absence of these episodes. Fish responses to acid-base chemistry were fairly consistent across regions. In general, trout abundance was reduced and acid-sensitive fish species were absent from ERP streams with median pH < 5.0-5.2 during high flow and inorganic Al > 100-200 μg/L. We conclude that episodic acidification can have long-term effects on fish communities in small streams.

Ecological Applications↗

USGS2013

Mercury bioaccumulation in fishes from subalpine lakes of the Wallowa-Whitman National Forest, northeastern Oregon and western Idaho

Mercury (Hg) is a globally distributed pollutant that poses considerable risks to human and wildlife health. Over the past 150 years since the advent of the industrial revolution, approximately 80 percent of global emissions have come from anthropogenic sources, largely fossil fuel combustion. As a result, atmospheric deposition of Hg has increased by up to 4-fold above pre-industrial times. Because of their isolation, remote high-elevation lakes represent unique environments for evaluating the bioaccumulation of atmospherically deposited Hg through freshwater food webs, as well as for evaluating the relative importance of Hg loading versus landscape influences on Hg bioaccumulation. The increase in Hg deposition to these systems over the past century, coupled with their limited exposure to direct anthropogenic disturbance make them useful indicators for estimating how changes in Hg emissions may propagate to changes in Hg bioaccumulation and ecological risk. In this study, we evaluated Hg concentrations in fishes of high-elevation, sub-alpine lakes in the Wallowa-Whitman National Forest in northeastern Oregon and western Idaho. Our goals were to (1) assess the magnitude of Hg contamination in small-catchment lakes to evaluate the risk of atmospheric Hg to human and wildlife health, (2) quantify the spatial variability in fish Hg concentrations, and (3) determine the ecological, limnological, and landscape factors that are best correlated with fish total mercury (THg) concentrations in these systems. Across the 28 study lakes, mean THg concentrations of resident salmonid fishes varied as much as 18-fold among lakes. Importantly, our top statistical model explained 87 percent of the variability in fish THg concentrations among lakes with four key landscape and limnological variables— catchment conifer density (basal area of conifers within a lake’s catchment), lake surface area, aqueous dissolved sulfate, and dissolved organic carbon. The basal area of conifers within a lake’s catchment was by far the most important variable explaining fish THg concentrations, with an increase in THg concentrations of more than 400 percent across the forest density spectrum. Across all study lakes, fish THg concentrations ranged from 0.004 to 0.438 milligrams per kilogram wet weight (mg/kg ww). Only a single individual fish sample exceeded the U.S. Environmental Protection Agency’s (USEPA) human health tissue residue criteria of 0.3 mg/kg ww. However, 54 percent of fish (N=177) exceeded the more stringent tissue residue criteria (0.04 mg/kg ww) adopted by the Oregon Department of Environmental Quality to better protect subsistence fishers. Additionally, 2 and 10 percent of fish exceeded levels associated with reduced common loon reproduction and behavior, respectively. Whereas 25 and 68 percent of fish sampled exceeded concentrations deemed protective of mink and kingfisher, respectively. These results suggest that THg concentrations may be present in these lakes at levels associated with ecological risk. It is important to note however, that accurate inference on potential impairment cannot be made within the context of this study design and further research is needed to better quantify these risks.

Oregon;Idaho↗

USGS2014

Mercury in fishes from Wrangell-St. Elias National Park and Preserve, Alaska

In this study, mercury (Hg) concentrations were examined in fishes from Wrangell-St. Elias National Park and Preserve, Alaska, the largest and one of the most remote units in the national park system. The goals of the study were to (1) examine the distribution of Hg in select lakes of Wrangell-St. Elias National Park and Preserve; (2) evaluate the differences in Hg concentrations among fish species and with fish age and size; and (3) assess the potential ecological risks of Hg to park fishes, wildlife, and human consumers by comparing Hg concentrations to a series of risk benchmarks. Total Hg concentrations ranged from 17.9 to 616.4 nanograms per gram wet weight (ng/g ww), with a mean (± standard error) of 180.0 ±17.9 across the 83 individuals sampled. Without accounting for the effects of size, Hg concentrations varied by a factor of 10.9 across sites and species. After accounting for the effects of size, Hg concentrations were even more variable, differing by a factor of as much as 13.2 within a single species sampled from two lakes. Such inter-site variation suggests that site characteristics play an important role in determining fish Hg concentrations and that more intensive sampling may be necessary to adequately characterize Hg contamination in the park. Size-normalized Hg concentrations also differed among three species sampled from Tanada Lake, and Hg concentrations were strongly correlated with age. Furthermore, potential risks to park fish, wildlife, and human users were variable across lakes and species. Although no fish from two of the lakes studied (Grizzly Lake and Summit Lake) had Hg concentrations exceeding any of the benchmarks used, concentrations in Copper Lake and Tanada Lake exceeded conservative benchmarks for bird (90 ng/g ww in whole-body) and human (150 ng/g ww in muscle) consumption. In Tanada Lake, concentrations in most fishes also exceeded benchmarks for risk to moderate- and low-sensitivity avian consumers (180 and 270 ng/g ww in whole-body, respectively), as well as the concentration at which Alaska State guidelines suggest at-risk groups limit fish consumption to 3 meals per week (320 ng/g). However, the relationship between Hg concentrations and fish size in Tanada Lake suggests that consumption of smaller-sized fishes could reduce Hg exposure in human consumers.

Alaska↗

USGS2017

Spatial and temporal distribution of bull trout ( Salvelinus confluentus )-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016

Acoustic cameras were used to assess the behavior and abundance of bull trout ( Salvelinus confluentus )-size fish at the entrance to the North Fork Reservoir juvenile fish floating surface collector (FSC). The purpose of the FSC is to collect downriver migrating juvenile salmonids at the North Fork Dam, and safely route them around the hydroelectric projects. The objective of the acoustic camera component of this study was to assess the behaviors of bull trout-size fish observed near the FSC, and to determine if the presence of bull trout-size fish influenced the collection or abundance of juvenile salmonids. Acoustic cameras were deployed near the surface and floor of the entrance to the FSC. The acoustic camera technology was an informative tool for assessing abundance and spatial and temporal behaviors of bull trout-size fish near the entrance of the FSC. Bull trout-size fish were regularly observed near the entrance, with greater abundances on the deep camera than on the shallow camera. Additionally, greater abundances were observed during the hours of sunlight than were observed during the night. Behavioral differences also were observed at the two depths, with surface fish traveling faster and straighter with more directed movement, and fish observed on the deep camera generally showing more milling behavior. Modeling potential predator-prey interactions and influences using collected passive integrated transponder (PIT) -tagged juvenile salmonids proved largely unpredictable, although these fish provided relevant timing and collection information. Overall, the results indicate that bull trout-size fish are present near the entrance of the FSC, concomitant with juvenile salmonids, and their abundances and behaviors indicate that they may be drawn to the entrance of the FSC because of the abundance of prey-sized fish.

Oregon↗

USGS2021

Summary of fish communities along Underwood Creek, Milwaukee, Wisconsin, 2004–2019

Beginning in 2010, sections of Underwood Creek in Milwaukee County, Wisconsin, have undergone reconstruction to allow for improved fish habitat and better management of storm flows. In addition, dam and drop structures were removed to help improve fish migration while reintroducing several native fish species. With the reconstruction of Underwood Creek underway, the Milwaukee Metropolitan Sewerage District sought to evaluate if these measures have resulted in improvements to the fish community in the upstream parts of the watershed. The U.S. Geological Survey began sampling fish communities in 2004 at the farthest downstream site on Underwood Creek (Reach A) which was reconstructed in 2017. Reach B, which is slightly upstream, had undergone reconstruction in 2010 and fish community sampling began in 2016. A third reach farther upstream near Elm Grove was schedule to begin reconstruction in 2019. To compare the fish before and after reconstruction at the Elm Grove Reach, a fish community survey was conducted in spring of 2019 at Elm Grove and Reach B. This document describes the fish community from this sampling in comparison to previous surveys. Before reconstruction, Elm Grove Reach contained fish species more indicative of a slower, stagnant, warmwater stream than the other two rehabilitated reaches. Although six of the eight species found in Elm Grove Reach have been found at the lower reaches, all but two of the species are considered tolerant. Reconstruction of Elm Grove Reach to a similar habitat as the lower reaches will likely support a more diverse fish community.

Wisconsin↗

USGS2013

Identifying nutrient reference sites in nutrient-enriched regions-Using algal, invertebrate, and fish-community measures to identify stressor-breakpoint thresholds in Indiana rivers and streams, 2005-9

Excess nutrients in aquatic ecosystems can lead to shifts in species composition, reduced dissolved oxygen concentrations, fish kills, and toxic algal blooms. In this study, nutrients, periphyton chlorophyll a (CHLa), and invertebrate- and fishcommunity data collected during 2005-9 were analyzed from 318 sites on Indiana rivers and streams. The objective of this study was to determine which invertebrate and fish-taxa attributes best reflect the conditions of streams in Indiana along a gradient of nutrient concentrations by (1) determining statistically and ecologically significant relations among the stressor (total nitrogen, total phosphorus, and periphyton CHLa) and response (invertebrate and fish community) variables; and (2) determining the levels at which invertebrate- and fish-community measures change in response to nutrients or periphyton CHL a . For water samples at the headwater sites, total nitrogen (TN) concentrations ranged from 0.343 to 21.6 milligrams per liter (mg/L) (median 2.12 mg/L), total phosphorus (TP) concentrations ranged from 0.050 to 1.44 mg/L (median 0.093 mg/L), and periphyton CHL a ranged from 0.947 to 629 mg/L (median 69.7 mg/L). At the wadable sites, TN concentrations ranged from 0.340 to 10.0 mg/L (median 2.31 mg/L), TP concentrations ranged from 0.050 to 1.24 mg/L (median 0.110 mg/L), and periphyton CHLa ranged from 0.383 to 719 mg/L (median 44.7 mg/L). Recursive partitioning identified statistically significant low and high breakpoint thresholds on invertebrate and fish measures, which demonstrated the ecological response in enriched conditions. The combined community (invertebrate and fish) mean low and high TN breakpoint thresholds were 1.03 and 2.61 mg/L, respectively. The mean low and high breakpoint thresholds for TP were 0.083 and 0.144 mg/L, respectively. The mean low and high breakpoint thresholds for periphyton CHL a were 20.9 and 98.6 milligrams per square meter (mg/m 2 ), respectively. Additive quantile regression analysis found similar thresholds (TN of 0.656 mg/L, mean TP of 0.118 mg/L, and periphyton CHLa of 27.2 mg/m 2 ) for some stressor variables as determined by the breakpoint analysis. The TN and TP concentrations in this study showed a nutrient gradient that spanned three orders of magnitude. Sites were divided into Low, Medium, and High nutrient groups based on the 10th and 75th percentiles. The invertebrate and fish communities were similar along the nutrient gradient, using an analysis of similarity, demonstrating there was not a species trophic gradient. Within all nutrient groups, invertebrate and fish communities were dominated by nutrient tolerant taxa (algivores, herbivores, and omnivores) that included invertebrates, such as Cheumatopsyche sp., Physella sp., and fish such as Stonerollers ( Campostoma spp.) and Bluntnose Minnow ( Pimephales notatus ). To determine if low nutrient concentrations at some sites were caused by algal uptake and not oligotrophic conditions, sites with low nutrient concentrations (less than 10th percentile for TN or TP) were examined based on the Low (less than or equal to the 10th percentile) and High (greater than the 75th percentile) periphyton CHL a concentrations. Within low nutrient sites, the invertebrate and fish communities were statistically different between Low and High periphyton CHL a categories. The majority of variance between the Low and High periphyton CHL a categories was caused by Cheumatopsyche sp. (caddisfly), Physella sp. (pulmonate snail), and Caenis latipennis (a mayfly) in the invertebrate community; and caused by Stonerollers, Western Blacknose Dace ( Rhinichthys atratulus meleagris ), and Creek Chub ( Semotilus atromaculatus ) in the fish community. The dominance of tolerant herbivore and omnivore taxa in the High periphyton CHL a group indicates that low nutrient concentrations are a result of nutrient uptake and increased algal growth. This study highlights the importance of assessing multiple lines of evidence when attempting to identify the trophic condition of a site.

Indiana↗

USGS2000

Organic compounds and trace elements in fish tissue and bed sediment from streams in the Yellowstone River basin, Montana and Wyoming, 1998

A comprehensive water-quality investigation of the Yellowstone River Basin began in 1997, under the National Water-Quality Assessment (NAWQA) Program. Twenty-four sampling sites were selected for sampling of fish tissue and bed sediment during 1998. Organic compounds analyzed included organochlorine insecticides and their metabolites and total polychlorinated biphenyls (PCBs) from fish-tissue and bed-sediment samples, and semivolatile organic compounds from bed-sediment samples. A broad suite of trace elements was analyzed from both fish-tissue and bed-sediment samples, and a special study related to mercury also was conducted. Of the 12 organochlorine insecticides and metabolites detected in the fish-tissue samples, the most compounds per site were detected in samples from integrator sites which represent a mixture of land uses. The presence of DDT, and its metabolites DDD and DDE, in fish collected in the Yellowstone Park area likely reflects long-term residual effects from historical DDT-spraying programs for spruce budworm. Dieldrin, chlordane, and other organic compounds also were detected in the fish-tissue samples. The compound p, p'-DDE was detected at 71 percent of the sampling sites, more than any other compound. The concentrations of total DDT in fish samples were low, however, compared to concentrations from historical data from the study area, other NAWQA studies in the Rocky Mountains, and national baseline concentrations. Only 2 of the 27 organochlorine insecticides and metabolites and total PCBs analyzed in bed sediment were detected. Given that 12 of the compounds were detected in fish-tissue samples, fish appeared to be more sensitive indicators of contamination than bed sediment.Concentrations of some trace elements in fish and bed sediment were higher at sites in mineralized areas than at other sites. Concentrations of selenium in fish tissue from some sites were above background levels. Concentrations of arsenic, chromium, copper, and lead in some of the bed-sediment samples potentially exceeded criteria for the protection of aquatic life.

Water-Resources Investigations Report↗

USGS2004

Trace elements and organic compounds in sediment and fish tissue from the Great Salt Lake basins, Utah, Idaho, and Wyoming, 1998-99

A study to determine the occurrence and distribution of trace elements, organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds in sediment and in fish tissue was conducted in the Great Salt Lake Basins study unit of the National Water-Quality Assessment (NAWQA) program during 1998-99. Streambed-sediment and fish-tissue samples were collected concurrently at 11 sites and analyzed for trace-element concentration. An additional four sites were sampled for streambed sediment only and one site for fish tissue only. Organic compounds were analyzed from streambed-sediment and fish-tissue samples at 15 sites concurrently. Bed-sediment cores from lakes, reservoirs, and Farmington Bay collected by the NAWQA program in 1998 and by other researchers in 1982 were used to examine historical trends in trace-element concentration and to determine anthropogenic sources of contaminants. Cores collected in 1982 from Mirror Lake, a high-mountain reference location, showed an enrichment of arsenic, cadmium, copper, lead, tin, and zinc in the surface sediments relative to the deeper sediments, indicating that enrichment likely began after about 1900. This enrichment was attributed to atmospheric deposition during the period of metal-ore mining and smelting. A core from Echo Reservoir, in the Weber River Basin, however, showed a different pattern of trace-element concentration that was attributed to a local source. This site is located downstream from the Park City mining district, which is the most likely historical source of trace elements. Cores collected in 1998 from Farmington Bay show that the concentration of lead began to increase after 1842 and peaked during the mid-1980s and has been in decline since. Recent sediments deposited during 1996-98 indicate a 41- to 62-percent reduction since the peak in the mid-1980s. The concentration of trace elements in streambed sediment was greatest at sites that have been affected by historic mining, including sites on Little Cottonwood Creek in the Jordan River basin, Silver Creek in the Weber River basin, and the Weber River below the confluence with Silver Creek. There was significant correlation of lead concentrations in streambed sediment and fish tissue, but other trace elements did not correlate well. Streambed sediment and fish tissue collected from sites in the Bear River basin, which is predominantly rangeland and agriculture, generally had low concentrations of most elements. Sediment-quality guidelines were used to assess the relative toxicity of streambed-sediment sites to aquatic communities. Sites affected by mining exceeded the Probable Effect Concentration (PEC), the concentration at which it is likely there will be a negative effect on the aquatic community, for arsenic, cadmium, copper, lead, silver, mercury, and zinc. Sites that were not affected by mining did not exceed these criteria. Concentrations of trace elements in samples collected from the Great Salt Lake Basins study unit (GRSL) are high compared to those of samples collected nationally with the NAWQA program. Nine of 15 streambed-sediment samples and 11 of 14 fish-tissue samples had concentrations of at least one trace element greater than the concentration of 90 percent of the samples collected nationally during 1993-2000. Organic compounds that were examined in streambed sediment and fish-tissue samples also were examined in bed-sediment cores. A bed-sediment core from Farmington Bay of Great Salt Lake showed an increase in total polycyclic aromatic hydrocarbon (PAH) concentrations coincident with the increase in population in Salt Lake Valley, which drains into this bay. Analysis of streambed-sediment samples showed that the highest concentrations of PAHs were detected at urban sites, including two sites in the lower Jordan River (the Jordan River flows into Farmington Bay), the Weber River at Ogden Bay, and the Provo River near Provo. Other organic compounds detected in streambed sediment in the lower Jordan River were PCBs, DDT compounds, and chlordane compounds. Organic compounds were detected more frequently in fish tissue than in streambed sediment. Chlordane compounds and PCBs were detected more frequently at urban sites. DDT compounds were detected at 13 of 15 sites including urban and agricultural sites. Concentrations of total DDT in fish tissue exceeded the guideline for protection of fish-eating wildlife at two urban sites. The concentration of organic compounds in the GRSL study unit is low compared with that of samples collected nationally.

Idaho, Utah, Wyoming↗

USGS1998

Trace elements in streambed sediment and fish liver at selected sites in the Upper Colorado River Basin, Colorado 1995-96

Trace elements were analyzed in streambed-sediment samples collected from 16 sites and in fish-liver samples collected from 14 sites in the Upper Colorado River Basin in Colorado as part of the National Water-Quality Assessment program. Sites sampled represented agricultural, mining, mixed, and urban/recreation land uses and background conditions. The results for 15 trace elements in streambed-sediment and in fish-liver samples are presented in this report. Fourteen of the selected trace elements were detected in streambed-sediment samples collected at all sites. Twelve of the selected trace elements were detected in fish liver at more than 50 percent of the sites. Cadmium, copper, selenium, and zinc were selected for a more detailed analysis. Cadmium, copper, and zinc concentrations in streambed sediment were highest at mining land-use sites in the Southern Rocky Mountains physiographic province. Selenium concentrations in streambed sediment were highest at an agricultural land-use site in the Colorado Plateau physiographic province. The concentration of trace elements in streambed sediment generally increased as particle size decreased. Concentrations of trace elements in fish liver generally did not follow the same relation to land use as concentrations in streambed sediment; however, cadmium concentrations in fish liver were highest at a mining land-use site in the Southern Rocky Mountains physiographic province, and selenium concentrations in fish liver were highest at an agricultural land-use site in the Colorado Plateau physiographic province. Copper and zinc concentrations in fish liver were highest at mixed land-use sites. Comparison of streambed-sediment and fish-liver concentrations to two other similar NAWQA studies in the Rocky Mountain region generally indicated similar patterns in relation to land use for streambed sediment, but not for fish liver. Cadmium, copper, and zinc concentrations in streambed sediment were highest at sites affected by mining in all three study units. Selenium concentrations in streambed sediment did not indicate relations among the three study units when compared to land use. Cadmium in fish liver was highest at sites affected by mining in all three study units. Copper, selenium, and zinc in fish liver did not indicate relations among the three study units when compared to land use.

Colorado↗

USGS1999

Fish losses to double-crested cormorant predation in Eastern Lake Ontario, 1992-97

We examined 4,848 regurgitated digestive pellets of double-crested cormorants ( Phalacrocorax auritus ) over a 6-year period (1992–97) to estimate annual predation on sport and other fishes in the eastern basin of Lake Ontario. We found more than 51,000 fish of 28 species. Using a model that incorporates annual colony nest counts; fledgling production rates; adult, immature, and young-of-year residence times (seasonal); estimates of mean number of fish per pellet and mean fish size; and a fecal pathway correction factor (4.0 percent), we estimate total annual number of fish consumed by cormorants in the eastern basin of Lake Ontario to range from 37 million to 128 million fish for 1993–97. This fish loss equates to an estimated 0.93 million to 3.21 million kg (mean 2.07 million kg) of fish consumed per year, principally alewife ( Alosa pseudoharengus , 42.3 percent) and yellow perch ( Perca flavescens , 18.4 percent). Forage fish (alewife, cyprinids, trout-perch [ Percopsis omiscomaycus ], and other minor components) accounted for 65 percent of the diet, and panfish contributed 34 percent of the diet for the 5-year period. Game fish were minor components of the diet, in view of an average estimated annual consumption of 900,000 smallmouth bass ( Micropterus dolomieui , 1.1 percent) and 168,000 salmonines (mostly lake trout, Salvelinus namaycush , 0.2 percent). Cormorant predation on lake trout fingerlings stocked in May 1993 and June 1994 was estimated through the use of coded wire tag recoveries from pellets collected on Little Galloo Island 1 and 4 days after stocking events. We estimated losses of 13.6 percent and 8.8 percent, respectively, of the fish stocked for the two events, an average of 11.2 percent. Such losses may be reduced through alteration of existing stocking practices.

Lake Ontario;Little Galloo Island↗

USGS2003

Importance of benthic prey for fishes in coral reef-associated sediments

The importance of open, sandy substrate adjacent to coral reefs as habitat and a food source for fishes has been little studied in most shallow tropical waters in the Pacific, including Hawai'i. In this study, in Hanalei Bay, Hiwai'i, we identified and quantified the major invertebrate fauna (larger than 0.5 mm) in the well-characterized sands adjoining the shallow fringing reefs. Concurrently, we identified the fish species that seemed to make substantial use of these sand habitats, estimated their density there, sampled their gut contents to examine trophic links with the sand habitat, and made other observations and collections to determine the times, locations, and types of activity there. A variety of (mostly small) polychaeres were dominant in the sediments at most sampling stations, along with many small crustaceans (e.g., amphipods, isopods, ostracods, and small shrimps) and fair numbers of mollusks (especially bivalves) and small echinoids. Fish guts examined contained ???77% of the total number of benthic taxa collected, including nearly all those just listed. However, fish consumption was selective, and the larger shrimps, crabs, and small cryptic fishes were dominant in the diets of most of the numerous predator taxa. Diets of benthic-feeding fishes showed relatively low specific overlap. The fish fauna in this area included substrate-indifferent pelagics, species with various degrees of reef relatedness, reef-restricted species, and (at the other extreme) permanent cryptic sand dwellers. Data on occurrence and movements of fishes indicated that a band of sandy substrate several tens of meters wide next to the reef was an active area for fishes, and activity was considerably different at different times of day and for fish of different ages. These results imply an important trophic role for the benthos in these near-reef habitats in support of reef-associated fishes.

Pacific Science↗

USGS2012

Status and trends in the fish community of Lake Superior, 2012

The Great Lakes Science Center has conducted daytime nearshore bottom trawl surveys of Lake Superior (15-80 m bathymetric depth zone) each spring since 1978 and an offshore survey (>80 m) since 2011 to provide long-term trends of relative abundance and biomass of the fish community. In 2012, 72 nearshore and 34 offshore stations were sampled with a 12-m Yankee bottom trawl. The 2012 estimate of lake-wide nearshore fish community biomass was 1.14 kg/ha, second lowest in the 35-year survey history, down from 3.63 kg/ha observed in the 2011 survey. Dominant species in the catch, in order of relative biomass, were bloater, rainbow smelt, lake whitefish, pygmy whitefish, and shortjaw cisco. Compared to 2011 levels, biomass of all species decreased. Year-class strengths for the 2011 cisco and bloater cohorts were well below average and ranked as the second weakest year-classes in the past 35 years. Year-class strength of rainbow smelt was the weakest in the survey record, continuing a decline that began in 2008. As in 2011, densities of hatchery lake trout remained near zero in 2012, while densities of wild (lean) lake trout and siscowet lake trout decreased. Proportions of total lake trout density in 2012 that were hatchery, wild, and siscowet were 5, 74, and 21%, respectively. The 2012 estimate of lake-wide offshore fish community biomass was 6.9 kg/ha, down from 9.0 kg/ha in 2011. Deepwater sculpin, kiyi, and siscowet lake trout represented 98% of the fish caught in terms of both density and biomass. Community composition, number of species collected and densities and biomass for most species were similar to that observed in 2011. Due to ship mechanical failures, nearshore sampling was delayed from mid-May to mid-June to mid-June to late August. The shift to summer sampling when the lake was stratified may have affected our estimates, thus our estimates of status and trends for the nearshore fish community in 2012 are tentative, pending results of future surveys. However, the results of the 2012 survey are comparable with those during 2009 and 2010 when lake-wide fish biomass declined to < 1.40 kg/ha. Declines in prey fish biomass since the late 1990s can be attributed to a combination of increased predation by recovered lake trout populations and infrequent and weak recruitment by the principal prey fishes, cisco and bloater. In turn declines in lake trout biomass since the mid-2000s are likely linked to declines in prey fish biomass. If lean and siscowet lake trout populations in nearshore waters continue to remain at current levels, predation mortality will likely maintain the relatively low prey fish biomass observed in recent years. Alternatively, if lake trout populations show a substantial decline in abundance in upcoming years, prey fish populations may rebound in a fashion reminiscent to what occurred in the late 1970s to mid-1980s. However, this scenario depends on substantial increases in harvest of lake trout, which seems unlikely given that levels of lake trout harvest have been flat or declining in many regions of Lake Superior since 2000.

Lake Superior↗

USGS2022

Status and trends of the Lake Huron prey fish community, 1976-2020

The USGS Great Lakes Science Center (GLSC) has assessed annual changes in the offshore prey fish community of Lake Huron since 1973. Assessments are based on a bottom trawl survey conducted in October and an acoustics-midwater trawl survey conducted in September-October. In 2020, USGS-GLSC vessels were not permitted to cross into Canada due to the COVID-19 pandemic, so prey fish surveys sampled only sites in U.S. (Michigan) waters of Lake Huron. This prevented USGS from providing information about the current status and trends of prey fish communities in Georgian Bay and the North Channel. Prey fish biomass in U.S. waters of Lake Huron in 2020 remained below levels observed prior to community-wide declines that began in the early to mid-1990s. Fish community biomass was dominated by two species, Bloater (Coregonus hoyi) and Rainbow Smelt (Osmerus mordax). While both surveys found Bloater biomass in the main basin had declined from levels observed in 2019, Bloater still comprised over three-quarters of prey fish biomass in Lake Huron in 2020. Biomass and abundance for other prey fish species were within the range observed over the past five years. Current low biomass of invasive species like Alewife (Alosa pseudoharengus) and Rainbow Smelt is consistent with fish community objectives focused on restoration of native fish communities. Reduced lake productivity, predation by a recovering piscivore community, and shifts in food web dynamics that favor fish production in nearshore environments may prevent prey fish biomass in offshore areas from returning to levels observed prior to the early 1990’s. However, the dominance of Bloater in bottom trawl catches and acoustic surveys suggests that current lake conditions are conducive to the recovery of some native species.

Lake Huron↗

USGS2025

Status and trends of pelagic and benthic prey fish populations in Lake Michigan, 2024

Fall bottom trawl (fall BT) and lakewide acoustic (AC) surveys are conducted annually to generate indices of pelagic and benthic prey fish densities in Lake Michigan. The fall BT survey has been conducted each fall since 1973 using 12-m trawls at depths ranging from 9 to 110 m at fixed locations distributed across seven transects; this survey estimates densities of seven prey fish species [i.e., Alewife ( Alosa pseudoharengus ), Bloater ( Coregonus hoyi ), Rainbow Smelt ( Osmerus mordax ), Deepwater Sculpin ( Myoxocephalus thompsonii ), Slimy Sculpin ( Cottus cognatus ), Round Goby ( Neogobius melanostomus ), Ninespine Stickleback ( Pungitius pungitius )] as well as age-0 Yellow Perch ( Perca flavescens ) and large (> 350 mm) Burbot ( Lota lota ). In recent years, wild juvenile (<400 mm) Lake Trout ( Salvelinus namaycush ) have also become more common in the fall bottom trawl. The AC survey has been conducted each late summer/early fall since 2004 (except 2020). The 2024 AC survey consisted of 24 transects [468 km total (291 miles)] covering bottom depths ranging from 16 to 173 m and 38 midwater trawl tows at 4 to 72 m; this survey estimates densities of three prey fish species (i.e., Alewife, Bloater, and Rainbow Smelt). The data generated from these surveys are used to estimate various population parameters that are, in turn, used by state and tribal agencies in managing Lake Michigan fish stocks. In spring of 2024, an additional spring bottom trawl survey (spring BT) was implemented across six of the transects sampled in the fall and sites ranged in depth from 9 to 237 m. The goal of the spring BT, conducted annually since 2021 with differing levels of effort, was to explore seasonal differences in biomass density and distributions of key prey species, most notably Alewife. Total prey fish biomass density from the spring BT was 5.7 kg/ha. For the AC survey, total biomass density of prey fish equaled 10.8 kg/ha, more than double the long-term average (20042023) of 5.1 kg/ha but 4.0 kg/ha lower than the 2023 estimate. For the fall BT, total biomass density of prey fish equaled 2.1 kg/ha, the lowest value since 2020 and 69% lower than the average from 2004-2023 (6.8 kg/ha). The 2024 fall BT biomass density was only 6.3% of the average over the entirety of the time series (1973-2023; 33.1 kg/ha). Over the period both surveys have been conducted (2004-2024), total biomass density has trended downward in the fall BT (despite a high 2022 estimate) and remained relatively stable in the AC survey. Deepwater Sculpin and Bloater were the most common species (by biomass) among prey fishes in the spring BT while the AC survey and fall BT reported co-dominance of Bloater and Alewife. Mean biomass of yearling and older (YAO) Alewife was 1.30 kg/ha in the spring BT, 4.7 kg/ha in the AC survey, and 0.68 kg/ha in the fall BT. Since 2014, annual survey results suggest that the catchability of YAO Alewives for the fall BT is substantially lower than the AC survey. Like previous spring surveys, Alewives were aggregated in deeper habitats, with 93% of biomass collected between 110 and 201 m. Results of the 2024 spring BT align with past spring surveys and do not suggest that spring bottom trawling provides a better index of age-2 and older Alewives than fall bottom trawling, even with adjustments for differences in habitat use. However, the spring BT does appear to index age-1 Alewives more effectively than the fall BT. The 2024 AC survey YAO Alewife biomass density estimate was 77% higher than the average from 2004-2023. The Alewife population of Lake Michigan appears to be composed mostly of young fish and the proportion of age-4 and older Alewives was <1.8% in each of the three surveys. Age-0 Alewife numeric density from the AC survey was 510 fish/ha in 2024, slightly higher than the long-term mean (486 fish/ha). Biomass density of large (≥120 mm) Bloater was 5.2 kg/ha in the AC survey and 0.76 kg/ha in the fall BT, while total Bloater biomass in the spring BT was 1.8 kg/ha - all three estimates were much lower than what was estimated by the fall BT between 1981 and 1998. The density of small (<120 mm) Bloater was 456 fish/ha in the AC survey, the second highest value in the time series and potentially reflective of an above average 2024 year-class. Meanwhile, small Bloater density estimated in the fall BT was only 16 fish/ha. Biomass density of large Rainbow Smelt (≥90 mm) was 0.21 kg/ha in the AC survey and 0.03 kg/ha in the fall BT survey, continuing the trend of low large Rainbow Smelt biomass observed since 2001. Numeric density of small (<90 mm) Rainbow Smelt was 31 fish/ha in the AC survey and 143 fish/ha in the fall BT. All four prey fish species indexed only by the fall BT had below-average biomass densities regardless of trawling season. Deepwater Sculpin biomass density was 0.26 kg/ha, which makes 14 of the past 15 years with biomass <1 kg/ha. Spring BT Deepwater Sculpin biomass density (2.0 kg/ha) was higher than any fall BT estimate since 2006, likely reflective of including bottom trawls at greater depths in the spring than the fall. Slimy Sculpin was estimated to be < 0.04 kg/ha in the spring and fall BT, an order of magnitude lower than the long-term average from the fall BT. Round Goby biomass density estimates were low and similar across seasons (0.43 kg/ha in the spring and 0.10 kg/ha in the fall). Ninespine Stickleback density was 3.9 fish/ha in the fall BT and no fish were collected in the spring BT.

Lake Michigan↗

USGS2026

Status and trends in the Lake Superior fish community, 2025

The U.S. Geological Survey has conducted annual trawl surveys across Lake Superior since 1978 that describe trends in fish species occurrence and relative abundance to support fisheries science and management. In 2025, the Lake Superior fish community was sampled with daytime bottom and surface trawls at 72 nearshore stations in May and June and 36 offshore locations in July. Nearshore bottom trawls collected 63,005 fish represented by 30 species or morphotypes. The number of species collected at each location ranged from 1 to 13, with a median of 7.0 species. Estimated fish biomass density at individual stations ranged from <0.1 to 125.7 kg per ha with a lakewide mean of 7.6 kg per ha. Offshore bottom trawls collected 30,342 fish represented by 13 species or morphotypes. Estimated fish biomass density at individual stations ranged from 1.6 to 34.7 kg per ha with a lakewide mean of 9.1 kg per ha, which was the highest since the offshore survey began in 2011. Lakewide average numerical densities (fish per ha) of age-1 fish were 0.67 per ha for Bloater, 0.01 per ha for Cisco, 1.15 per ha for Kiyi, 0.95 per ha for Lake Whitefish, and 336.33 per ha for Rainbow Smelt. Surface trawling collected 1,562 larval Coregonus individuals which was the fewest Coregonus larvae collected in a whole lake survey since the larval fish survey began in 2014. Nearshore mean larval Coregonus numerical densities were 156 fish per ha in May and June 2025 and 21 fish per ha in July 2025. May mean surface water temperatures (6.1°C) were near the warmest for the period-of-record, while June (6.8°C) and July (10.0°C) were near average or below.

Lake Superior↗