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At least 325 records · Page 18Linked to original sources

USGS2014

Temporal changes in taxonomic and functional diversity of fish assemblages downstream from mountaintop mining

Mountaintop mining (MTM) affects chemical, physical, and hydrological properties of receiving streams, but the long-term consequences for fish-assemblage structure and function are poorly understood. We sampled stream fish assemblages using electrofishing techniques in MTM exposure sites and reference sites within the Guyandotte River basin, USA, during 2010–2011. We calculated indices of taxonomic diversity (species richness, abundance, Shannon diversity) and functional diversity (functional richness, functional evenness, functional divergence) to compare exposure and reference assemblages between seasons (spring and autumn) and across years (1999–2011). We based temporal comparisons on 2 sites that were sampled during 1999–2001 by Stauffer and Ferreri (2002). Exposure assemblages had lower taxonomic and functional diversity than reference assemblages or simulated assemblages that accounted for random variation. Differences in taxonomic composition between reference and exposure assemblages were associated with conductivity and aqueous Se concentrations. Exposure assemblages had fewer species, lower abundances, and less biomass than reference assemblages across years and seasons. Green Sunfish ( Lepomis cyanellus ) and Creek Chub ( Semotilus atromaculatus ) became numerically dominant in exposure assemblages over time because of their persistence and losses of other taxa. In contrast, species richness increased over time in reference assemblages, a result that may indicate recovery from drought. Mean individual biomass increased as fish density decreased and most obligate invertivores were apparently extirpated at MTM exposure sites. Effects of MTM were not related to physical-habitat conditions but were associated with water-quality variables, which may limit quality and availability of benthic macroinvertebrate prey. Simulations revealed effects of MTM that could not be attributed to random variation in fish assemblage structure.

West Virginia↗

USGS2016

Response of ecosystem metabolism to low densities of spawning Chinook salmon

Marine derived nutrients delivered by large runs of returning salmon are thought to subsidize the in situ food resources that support juvenile salmon. In the Pacific Northwest, USA, salmon have declined to <10% of their historical abundance, with subsequent declines of marine derived nutrients once provided by large salmon runs. We explored whether low densities (<0.001 spawners/m 2 ) of naturally spawning Chinook Salmon ( Oncorhynchus tshawytscha ) can affect ecosystem metabolism. We measured gross primary production (GPP) and ecosystem respiration (ER) continuously before, during, and after salmon spawning. We compared downstream reaches with low densities of spawning salmon to upstream reaches with fewer or no spawners in 3 mid-sized (4 th -order) rivers in northern Washington. In addition, we measured chemical, physical, and biological factors that may be important in controlling rates of GPP and ER. We observed that low densities of spawning salmon can increase GPP by 46% during spawning, but values quickly return to those observed before spawning. No difference in ER was observed between up- and downstream reaches. Based on our results, salmon density, temperature, and the proximity to salmon redds were the most important factors controlling rates of GPP, whereas temperature was most important for ER. These results suggest that even at low spawning densities, salmon can stimulate basal resources that may propagate up the food web. Understanding how recipient ecosystems respond to low levels of marine derived nutrients may inform nutrient augmentation studies aimed at enhancing fish populations.

Freshwater Science↗

USGS2001

Disease emergence in birds: Challenges for the twenty-first century

The paper by Hartup et al. (2001) on House Finch ( Carpodacus mexicanus ) conjunctivitis is an example of the rapid geographic spread that can result from disease emergence in naïve populations. That event was neither novel nor transient relative to its occurrence or effects. Disease emergence and reemergence are hallmarks of the latter part of the twentieth century (Center for Disease Control 1994, Levins et al. 1994, DaSilva and Laccarino 1999, Gratz 1999). Current examples involving domestic animals include the problems in Europe with bovine spongiform encephalopathy (BSE, or “mad cow disease”) (Brown 2001) and foot-and-mouth disease (FMD) (Kitching 1999). Human health has been affected by diseases caused by an array of viruses (Morse 1993, Nichol et al. 1993, Murphy and Nathanson 1994), bacteria (Dennis 1998, DaSilva and Laccarino 1999), rickettsia (Walker and Dumier 1996, Azad et al. 1997), protozoans (Tuerrant 1997, Saini et al. 2000), and metazoan parasites (Hildreth et al. 1991, Gubler 1998), as well as other causes. Acquired immune deficiency syndrome (AIDS) has received the most notoriety of those diseases (Hahn et al. 2000, Schwartlander et al. 2000). A similar pattern exists on a global scale for free-ranging wildlife populations (Table 1) (Friend 1994, 1995; Epstein et al. 1998, Daszak et al. 2000). However, in comparison to disease emergence affecting humans and domestic animals, response to emerging diseases of wildlife is generally superficial. We present concepts and data to support our contention that failure to adequately address disease emergence in free-ranging wildlife is resulting in a diminished capability to achieve and sustain desired geographic distributions and population abundance for species of wild birds, including some threatened and endangered avifauna. For clarity, we define disease and disease emergence in the context of our use of those terms because they are the focus of our comments. Disease is any departure from health (Guralnik 1982); that is, dysfunction contributing to physiological, physical, reproductive, behavioral, or other impairment that reduces the probability of survival of individuals. If enough individuals are affected, the collective effects can reduce the sustainability of the population. Although disease can result from exposure to a wide variety of physical, chemical, and biological agents and other conditions, we focus this paper on microbes and parasites and to overt mortality caused by them. Thus, disease effects presented only represent the proverbial “tip of the iceberg” relative to the challenges wild avifauna face from disease. Our perspective of disease emergence expands the earlier definitions of emerging diseases by others (Centers for Disease Control and Prevention 1994, Morse 1995) to include all species. Our comments are defined by the context of disease occurrences that have increased within the past three decades, or threaten to increase in the near future relative to populations affected, geographic distribution, or magnitude of effects.

The Auk↗

USGS2011

Vertebrate species introductions in the United States and its territories

At least 1,065 introduced vertebrate species have been introduced in the United States and its territories, including at least 86 mammalian, 127 avian, 179 reptilian/amphibian, and 673 fish species. Examples in each major taxonomic group include domestic cat, small Indian mongoose, red fox, goat, pig, rabbit, rats, house mouse, gray squirrel, nutria, starling, Indian common myna, red-vented bulbul, brown treesnake, red-eared slider, brown trout, tilapia, and grass carp. We briefly review some of these species and the types of damage they cause. We then review the basic types of methods used for control or eradication of each taxonomic group, including physical, chemical, biological, and cultural methods. We discuss some of the challenges in managing these species, including issues with the use of toxicants, land access, public attitudes, and monitoring difficulties. Finally, we list some ongoing research and future research needs, including improved detection methods, improved attractants, improved barriers, improved capture methods, fertility control, and risk assessment methods.

Current Zoology↗

USGS1978

Comparison of a few recording current meters in San Francisco Bay, CA

A team of research scientists in the U.S. Geological Survey uses San Francisco Bay, California, as an outdoor laboratory to study complicated interactions of physical, chemical, and biological processes which take place in an estuarine environment. A current meter comparison study was conceived because of the need to select a suitable current meter to meet field requirements for current measurements in the Bay. The study took place in south San Francisco Bay, California, in the spring of 1977. An instrument tower which was designed to support instruments free from the conventional mooring line motions was constructed and emplaced in south San Francisco Bay. During a period of two months, four types of recording current meters have been used in the tests. The four types were: (1) Aanderaa, (2) tethered shroud-impeller, (3) drag-inclinometer, and (4) electromagnetic current meters. With the exception of the electromagnetic current meter, one of each type was mounted on the instrument tower, and one of each type was deployed on moorings near the instrument tower. In addition, a wind anemometer and a recording tide gauge were also installed on the tower. This paper discusses the characteristics of each instrument and the accuracy that each instrument can provide when used in an estuarine environment. We pay special attention to our experiences in the field operation with respect to handling of the instruments and to our experiences working up the raw data in the post-deployment data analysis.

California↗

USGS2019

Annual winter water level drawdowns limit shallow-water mussel densities in small lakes

Regulated water level fluctuations alter the physical, chemical, and biological environments in lakes. However, few studies have measured the effects of repeated annual winter drawdowns on freshwater mussel populations (Bivalvia: Unionida), and it is unknown whether drawdowns permanently constrain mussel populations to deeper depths or are resilient to the annual disturbance. We quantified mussel densities during normal water levels and their mortality after the initiation of drawdown in lakes with annual winter (December–March) water level drawdown regimes that have existed for several decades. We used systematic quadrat sampling and visual snorkel surveys to estimate the number of live mussels at the surface and buried, and shell length in six drawdown and three control lakes at exposed (0.5-m) and unexposed (1-m) depths during winter drawdown. We also estimated mortality of mussels along the exposed lakebed for nine drawdown lakes. Study lakes were dominated by Elliptio complanata and Pyganodon cataracta . During normal water levels, mussel densities were much lower in drawdown lakes than control lakes at 0.5-m depths. When mussels were present in drawdown lakes at 0.5-m depths, they were often burrowed in the substrate and smaller than buried mussels in control lakes. At unexposed 1-m depths, mussel densities were primarily explained by geographic region (western versus central Massachusetts), and found higher densities in drawdown lakes compared to control lakes. Mussel mortality after a single drawdown event in nine drawdown lakes was not correlated with drawdown magnitude or rate. Concordance of shell length-frequency distributions between dead and buried living mussels in drawdown lakes suggests annual mortality of colonising individuals, which are typically small and presumably of young cohorts. Annual winter drawdowns still limit densities of E. complanata and P. cataracta in shallow-water habitats in the following autumn (September–October) after 4–5 months of potential recovery, and hence constrain their distribution in lakes exposed to drawdowns. The development of sustainable water level management practices will be essential to minimise impacts to native mussel populations.

Massachusetts↗

USGS2015

Human activities cause distinct dissolved organic matter composition across freshwater ecosystems

Dissolved organic matter (DOM) composition in freshwater ecosystems is influenced by interactions between physical, chemical, and biological processes that are controlled, at one level, by watershed landscape, hydrology, and their connections. Against this environmental template, humans may strongly influence DOM composition. Yet, we lack a comprehensive understanding of DOM composition variation across freshwater ecosystems differentially affected by human activity. Using optical properties, we described DOM variation across five ecosystem groups of the Laurentian Great Lakes Region: large lakes, Kawartha Lakes, Experimental Lakes Area, urban stormwater ponds, and rivers (n = 184 sites). We determined how between ecosystem variation in DOM composition related to watershed size, land use and cover, water quality measures (conductivity, dissolved organic carbon (DOC), nutrient concentration, chlorophyll a ), and human population density. The five freshwater ecosystem groups had distinctive DOM composition from each other. These significant differences were not explained completely through differences in watershed size nor spatial autocorrelation. Instead, multivariate partial least squares regression showed that DOM composition was related to differences in human impact across freshwater ecosystems. In particular, urban/developed watersheds with higher human population densities had a unique DOM composition with a clear anthropogenic influence that was distinct from DOM composition in natural land cover and/or agricultural watersheds. This nonagricultural, human developed impact on aquatic DOM was most evident through increased levels of a microbial, humic-like parallel factor analysis component (C6). Lotic and lentic ecosystems with low human population densities had DOM compositions more typical of clear water to humic-rich freshwater ecosystems but C6 was only present at trace to background levels. Consequently, humans are strongly altering the quality of DOM in waters nearby or flowing through highly populated areas, which may alter carbon cycles in anthropogenically disturbed ecosystems at broad scales.

Global Change Biology↗

USGS2016

Estuary-ocean connectivity: Fast physics, slow biology

Estuaries are connected to both land and ocean so their physical, chemical, and biological dynamics are influenced by climate patterns over watersheds and ocean basins. We explored climate-driven oceanic variability as a source of estuarine variability by comparing monthly time series of temperature and chlorophyll- a inside San Francisco Bay with those in adjacent shelf waters of the California Current System (CCS) that are strongly responsive to wind-driven upwelling. Monthly temperature fluctuations inside and outside the Bay were synchronous, but their correlations weakened with distance from the ocean. These results illustrate how variability of coastal water temperature (and associated properties such as nitrate and oxygen) propagates into estuaries through fast water exchanges that dissipate along the estuary. Unexpectedly, there was no correlation between monthly chlorophyll- a variability inside and outside the Bay. However, at the annual scale Bay chlorophyll- a was significantly correlated with the Spring Transition Index (STI) that sets biological production supporting fish recruitment in the CCS. Wind forcing of the CCS shifted in the late 1990s when the STI advanced 40 days. This shift was followed, with lags of 1–3 years, by 3- to 19-fold increased abundances of five ocean-produced demersal fish and crustaceans and 2.5-fold increase of summer chlorophyll- a in the Bay. These changes reflect a slow biological process of estuary–ocean connectivity operating through the immigration of fish and crustaceans that prey on bivalves, reduce their grazing pressure, and allow phytoplankton biomass to build. We identified clear signals of climate-mediated oceanic variability in this estuary and discovered that the response patterns vary with the process of connectivity and the timescale of ocean variability. This result has important implications for managing nutrient inputs to estuaries connected to upwelling systems, and for assessing their responses to changing patterns of upwelling timing and intensity as the planet continues to warm.

California↗

USGS2019

Characterization of the exoskeleton of the Antarctic king crab Paralomis birsteini

Ocean acidification is projected to inhibit the biogenic production of calcium-carbonate skeletons in marine organisms. Antarctic waters represent a natural environment in which to examine the long-term effects of carbonate undersaturation on calcification in marine predators. King crabs (Decapoda: Anomura: Lithodidae), which currently inhabit the undersaturated environment of the continental slope off Antarctica, are potential invasives on the Antarctic shelf as oceanic temperatures rise. Here, we describe the chemical, physical, and mechanical properties of the exoskeleton of the deep-water Antarctic lithodid Paralomis birsteini and compare our measurements with two decapod species from shallow water at lower latitudes: Cancer borealis (Brachyura: Cancridae) and Callinectes sapidus (Brachyura: Portunidae). Paralomis birsteini deposit proportionally more calcium carbonate in their predatory chelae than their protective carapaces, compared with the other two crab species. When exoskeleton thickness and microhardness were compared between the chelae and carapace, the magnitude of the difference between these body regions was significantly greater in P. birsteini than in the other species tested. Hence, there appeared to be a greater disparity in P. birsteini in overall investment in calcium-carbonate structures among regions of the exoskeleton. The imperatives of prey consumption and predator avoidance may be influencing the deposition of calcium to different parts of the exoskeleton in lithodids living in an environment undersaturated with respect to calcium carbonate.

Invertebrate Biology↗

USGS2004

The effects of macroinvertebrate taxonomic resolution in large landscape bioassessments: An example from the Mid-Atlantic Highlands, U.S.A.

1. During late spring 1993-1995, the U.S. Environmental Protection Agency's Environmental Monitoring and Assessment Program (EMAP) sampled 490 wadeable streams in the mid-Atlantic Highlands (MAH) of the U.S. for a variety of physical, chemical and biological indicators of environmental condition. We used the resulting data set to evaluate the importance of differing levels of macroinvertebrate taxonomic resolution in bioassessments by comparing the ability of family versus genus to detect differences among sites classified by type and magnitude of human impact and by stream size. We divided the MAH into two physiographic regions: the Appalachian Plateau where mine drainage (MD) and acidic deposition are major stressors, and the Ridge and Valley where nutrient enrichment is a major stressor. Stream sites were classified into three or four impact classes based on water chemistry and habitat. We used stream order (first to third Strahler order) in each region as a measure of stream size. Ordination, 2 x 2 chi-square and biotic metrics were used to compare the ability of family and genus to detect differences among both stressor and size classes. 2. With one notable exception, there were only a small number of different genera per family (interquartile range = 1-4). Family Chironomidae, however, contained 123 different genera. As a result, significant information loss occurred when this group was only classified to family. The family Chironomidae did not discriminate among the predefined classes but many chironomid genera did: by chi-square analysis, 10 and 28 chironomid genera were significant in discriminating MD and nutrient impacts, respectively. 3. Family and genus data were similar in their ability to distinguish among the coarse impacts (e.g. most severe versus least severe impact classes) for all cases. Though genus data in many cases distinguished the subtler differences (e.g. mixed/moderate impacts versus high or low impacts) better than family, differences in significance levels between family and genus analyses were relatively minor. However, genus data detected differences among stream orders in ordination analyses that were not revealed at the family level. In the ordinations, both family and genus levels of analysis responded to similar suites of environmental variables. 4. Our results suggest that identification to the family level is sufficient for many bioassessment purposes. However, identifications to genus do provide more information in genera-rich families like Chironomidae. Genus or finer levels of identification are important for investigating natural history, stream ecology, biodiversity and indicator species. Decisions about the taxonomic level of identification need to be study specific and depend on available resources (cost) and study objectives.

Freshwater Biology↗

USGS2010

Quantifying restoration success and recovery in a metal-polluted stream: A 17-year assessment of physicochemical and biological responses

Evaluating the effectiveness of stream restoration is often challenging because of the lack of pre-treatment data, narrow focus on physicochemical measures and insufficient post-restoration monitoring. Even when these fundamental elements are present, quantifying restoration success is difficult because of the challenges associated with distinguishing treatment effects from seasonal variation, episodic events and long-term climatic changes.2. We report results of one of the most comprehensive and continuous records of physical, chemical and biological data available to assess restoration success for a stream ecosystem in North America. Over a 17 year period we measured seasonal and annual changes in metal concentrations, physicochemical characteristics, macroinvertebrate communities, and brown trout Salmo trutta populations in the Arkansas River, a metal-contaminated stream in Colorado, USA.3. Although we observed significant improvements in water quality after treatment, the effectiveness of restoration varied temporally, spatially and among biological response variables. The fastest recovery was observed at stations where restoration eliminated point sources of metal contamination. Recovery of macroinvertebrates was significantly delayed at some stations because of residual sediment contamination and because extreme seasonal and episodic variation in metal concentrations prevented recolonization by sensitive species. Synthesis and applications. Because recovery trajectories after the removal of a stressor are often complex or nonlinear, long-term studies are necessary to assess restoration success within the context of episodic events and changes in regional climate. The observed variation in recovery among chemical and biological endpoints highlights the importance of developing objective criteria to assess restoration success. Although the rapid response of macroinvertebrates to reduced metal concentrations is encouraging, we have previously demonstrated that benthic communities from the Arkansas River remained susceptible to other novel anthropogenic stressors. We suggest that the resistance or resilience of benthic macroinvertebrate communities to novel stressors may be effective indicators of restoration success that can account for the non-additive (e.g. synergistic) nature of compound perturbations. ?? 2010 The Authors. Journal compilation ?? 2010 British Ecological Society.

Journal of Applied Ecology↗

USGS2011

Lake sturgeon response to a spawning reef constructed in the Detroit river

Prior to the First World War, the bi-national Detroit River provided vast areas of functional fish spawning and nursery habitat. However, ongoing conflicting human uses of these waters for activities such as waste disposal, water withdrawals, shoreline development, shipping, recreation, and fishing have altered many of the chemical, physical, and biological processes of the Detroit River. Of particular interest and concern to resource managers and stakeholders is the significant loss and impairment of fish spawning and nursery habitat that led to the decline in abundance of most fish species using this ecosystem. Lake sturgeon ( Acipenser fulvescens ) populations for example, were nearly extirpated by the middle of the 20th century, leaving only a small fraction of their former population. Fisheries managers recognized that the loss of suitable fish spawning habitat is a limiting factor in lake sturgeon population rehabilitation in the Detroit River. In efforts to remediate this beneficial water use impairment, a reef consisting of a mixture of natural rock and limestone was constructed at the upstream end of Fighting Island in 2008. This paper focuses on the response by lake sturgeon to the different replicates of suitable natural materials used to construct the fish spawning habitat at Fighting Island in the Detroit River. Pre-construction fisheries assessment during 2006–2008 showed that along with the presence of adult lake sturgeon, spawning conditions were favorable. However, no eggs were found in assessments conducted prior to reef construction. The 3300 m 2 Fighting Island reef was placed at the upstream end of the island in October of 2008. The construction design included 12 spawning beds of three replicates each consisting of either round rock, small or large (shot-rock) diameter limestone or a mixture thereof. An observed response by spawning lake sturgeon occurred the following year when spawning-ready adults (ripe), viable eggs, and larvae were collected during May and June 2009. Additional eggs and spawning-ready adults were found in 2010 (no larval sampling occurred in 2010) as well as collection of three age-0 juvenile lake sturgeon in bottom trawls fished downstream of the reef during July 2010. Spawning lake sturgeon showed no repeatable preference for any of the four particular substrate types but showed a high degree of preference for the island side of the channel, where faster water current velocities occurred. In 2009, overall lake sturgeon egg densities across all replicates averaged 102 m -2 and seven larvae were found in night drift-net samples. In 2010, average lake sturgeon egg density was 12 m -2 and three age-0 lake sturgeon averaging 120 mm TL were collected in bottom trawls in deepwater (∼8 m depth) downstream from the constructed reef. These results demonstrated successful reproduction by lake sturgeon on a man-made reef and suggested that additions and improvements to fish spawning habitat could enhance reproduction and early life history survival of lake sturgeon in the Detroit River.

Michigan;Ontario↗

USGS2007

A watershed approach to ecosystem monitoring in Denali National Park and preserve, Alaska

The National Park Service and the National Biological Service initiated research in Denali National Park and Preserve, a 2.4 million-hectare park in southcentral Alaska, to develop ecological monitoring protocols for national parks in the Arctic/Subarctic biogeographic area. We are focusing pilot studies on design questions, on scaling issues and regionalization, ecosystem structure and function, indicator selection and evaluation, and monitoring technologies. Rock Creek, a headwater stream near Denali headquarters, is the ecological scale for initial testing of a watershed ecosystem approach. Our conceptual model embraces principles of the hydrological cycle, hypotheses of global climate change, and biological interactions of organisms occupying intermediate, but poorly studied, positions in Alaskan food webs. The field approach includes hydrological and depositional considerations and a suite of integrated measures linking key aquatic and terrestrial biota, environmental variables, or defined ecological processes, in order to establish ecological conditions and detect, track, and understand mechanisms of environmental change. Our sampling activities include corresponding measures of physical, chemical, and biological attributes in four Rock Creek habitats believed characteristic of the greater system diversity of Denali. This paper gives examples of data sets, program integration and scaling, and research needs.

Journal of the American Water Resources Associatio↗

USGS2007

Quantifying urban intensity in drainage basins for assessing stream ecological conditions

Three investigations are underway, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program, to study the relation between varying levels of urban intensity in drainage basins and in-stream water quality, measured by physical, chemical, and biological factors. These studies are being conducted in the vicinities of Boston (Massachusetts), Salt Lake City (Utah), and Birmingham (Alabama), areas where rapid urbanization is occurring. For each study, water quality will be sampled in approximately 30 drainage basins that represent a gradient of urban intensity. This paper focuses on the methods used to characterize and select the basins used in the studies. It presents a methodology for limiting the variability of natural landscape characteristics in the potential study drainage basins and for ranking the magnitude of human influence, or urbanization, based on land cover, infrastructure, and socioeconomic data in potential study basins. Basin characterization efforts associated with the Boston study are described for illustrative purposes.

Alabama, Massachusetts, Utah↗

USGS1972

Factors of ecologic succession in oligotrophic fish communities of the Laurentian Great Lakes

Oligotrophic fish communities of the Great Lakes have undergone successive disruptions since the mid-1800s. Major contributing factors have been intensive selective fisheries, extreme modification of the drainage, invasion of marine species, and progressive physical–chemical changes of the lake environments. Lake Ontario was the first to be affected as its basin was settled and industrialized earliest, and it was the first to be connected by canals to the mid-Atlantic where the alewife ( Alosa pseudoharengus ) and sea lamprey ( Petromyzon marinus ) which ultimately became established in the Great Lakes were abundant. Oligotrophic fish communities were successively disrupted in Lakes Erie, Huron, Michigan, and Superior as the affects of population growth, industrialization, and marine invaders spread upward in the Laurentian drainage.The degree and sequence of response of families offish and species within families differed for each factor, but the sequence of change among families and species has been the same in response to each factor as it affected various lakes at different times. The ultimate result of the disruption of fish communities has been a reduction of productivity of oligotrophic species that ranges from extreme in Lake Ontario to moderate in Lake Superior, and which has reached a state of instability and rapid change in the upper three Great Lakes by the rnid-1900s similar to the situation in Lake Ontario in the mid-1800s. Since oligotrophic species (primarily salmonines, coregonines, and deepwater cottids) are the only kinds of fish that fully occupied the entire volume of the deepwater Great Lakes (Ontario, Huron, Michigan, and Superior), the fish biomass of these lakes has been reduced as various species declined or disappeared. In Lake Erie, which is shallow, and in the shallow bays of the deep lakes, oligotrophic species were replaced by mesotrophic species, primarily percids, which have successively increased and declined. All oligotrophic species are greatly reduced or extinct in lakes Ontario and Erie, and are in various stages of decline in lakes Huron, Michigan, and Superior, from greatest to least, respectively. The percids appear to be near the end of their sequence of succession in lakes Erie, Ontario, and Huron (primarily Saginaw Bay) where only the yellow perch ( Perca flavescens ) remains abundant. The yellow perch appears to be on the brink of decline in Lake Erie, which has been more severely influenced by water quality change than the other lakes.

Journal of the Fisheries Research Board of Canada↗

USGS2011

Hyperspectral remote sensing of vegetation

Hyperspectral narrow-band (or imaging spectroscopy) spectral data are fast emerging as practical solutions in modeling and mapping vegetation. Recent research has demonstrated the advances in and merit of hyperspectral data in a range of applications including quantifying agricultural crops, modeling forest canopy biochemical properties, detecting crop stress and disease, mapping leaf chlorophyll content as it influences crop production, identifying plants affected by contaminants such as arsenic, demonstrating sensitivity to plant nitrogen content, classifying vegetation species and type, characterizing wetlands, and mapping invasive species. The need for significant improvements in quantifying, modeling, and mapping plant chemical, physical, and water properties is more critical than ever before to reduce uncertainties in our understanding of the Earth and to better sustain it. There is also a need for a synthesis of the vast knowledge spread throughout the literature from more than 40 years of research.

Book↗

USGS2020

Influence of sediment and stream transport on detecting a source of environmental DNA

Environmental DNA (eDNA) can be used for early detection, population estimations, and assessment of potential spread of invasive species, but questions remain about factors that influence eDNA detection results. Efforts are being made to understand how physical, chemical, and biological factors—settling, resuspension, dispersion, eDNA stability/decay—influence eDNA estimations and potentially population abundance. In a series of field and controlled mesocosm experiments, we examined the detection and accumulation of eDNA in sediment and water and the transport of eDNA in a small stream in the Lake Michigan watershed, using the invasive round goby fish ( Neogobius melanostomus ) as a DNA source. Experiment 1: caged fish (average n = 44) were placed in a stream devoid of round goby; water was collected over 24 hours along 120-m of stream, including a simultaneous sampling event at 7 distances from DNA source; stream monitoring continued for 24 hours after fish were removed. Experiment 2: round goby were placed in laboratory tanks; water and sediment were collected over 14 days and for another 150 days post-fish removal to calculate eDNA shedding and decay rates for water and sediment. For samples from both experiments, DNA was extracted, and qPCR targeted a cytochrome oxidase I gene (COI) fragment specific to round goby. Results indicated that eDNA accumulated and decayed more slowly in sediment than water. In the stream, DNA shedding was markedly lower than calculated in the laboratory, but models indicate eDNA could potentially travel long distances (up to 50 km) under certain circumstances. Collectively, these findings show that the interactive effects of ambient conditions (e.g., eDNA stability and decay, hydrology, settling-resuspension) are important to consider when developing comprehensive models. Results of this study can help resource managers target representative sites downstream of potential invasion sites, thereby maximizing resource use.

PLoS ONE↗

USGS1955

Is Carbon dioxide an ore-forming fluid under shallow-earth conditions?

A review of some of the physical-chemical properties of CO 2 and of the system CO 2 --H 2 O indicates that under some shallow-earth conditions CO 2 can exist as a separate phase with a density approximately that of water. The effect of dissolved neutral or acid salts on the solubility of CO 2 in H 2 O is not large. Carbonates, oxides, and silicates, through reactions with a CO 2 -saturated water phase, will eventually cause the disappearance of a CO 2 phase. The prevalence of CO 2 in the earth's crust is attested by its abundance in natural gases and fluid inclusions in minerals. Some of the characteristics of uranium ores of the Colorado Plateau are not incompatible with the assumption that deposition was from a fluid CO 2 phase.

Economic Geology↗