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At least 325 records · Page 18Linked to original sources

Movement dynamics influence population monitoring and adaptive harvest management strategies in migratory birds

Informed population monitoring efforts are essential for sound management of harvested species, and adaptive strategies that provide detailed information to monitoring efforts often require data inputs from complimentary sources. Movement ecology information is seldom directly incorporated into population monitoring or adaptive harvest management strategies, yet can provide valuable information on species distributions, emigration and immigration rates, and aid in determining optimal population monitoring timing. The Rocky Mountain Population (RMP) of Sandhill Cranes is a harvested population subject to a stringent adaptive harvest management framework and an annual aerial survey to estimate population abundance, but movements of Sandhill Cranes during survey windows, and subsequent changes to harvest quotas based on their movement and distribution have not been investigated. We used seven years of GPS tracking data to estimate state-specific emigration and immigration rates, using a Bayesian multi-state capture-recapture model, among states within the RMP distribution to understand how seasonal crane movements may influence optimal aerial survey timing. We then leveraged these transition probabilities in conjunction with aerial survey count data to model how changes in aerial survey timing and movement-informed crane distribution would influence the current RMP Sandhill Crane adaptive harvest management model resulting in estimated changes to harvest allocation among states based on Sandhill Crane movement. We found that Sandhill Crane emigration from northern states began to increase the week of the aerial survey in late September, and continued to increase as autumn migration progressed into October. As expected, immigration to southern states began as emigration from northern states increased. Importantly, little movement among states occurred prior to the current aerial survey design timing. Overall, we found that current survey timing and shortly thereafter (∼1 week) did not greatly influence estimates of Sandhill Crane distribution, and did not greatly influence the harvest reallocation to each state until mid to late October (range of −42–+52 tag allocation change), much later than the current survey design would allow. Using GPS locations, we found that optimal population monitoring efforts could be improved to account for both detection and seasonal movements, while minimally influencing current adaptive harvest management strategies to stakeholders. Linking movement ecology with population monitoring efforts and subsequently adaptive harvest management strategies yields insightful information that can be beneficial for conservation planning, decision-making, and optimal species management of a migratory bird.

Colorado, Idaho, Montaha, Utah, Wyoming

A multispecies approach to manage effects of land cover and weather on upland game birds

Loss and degradation of grasslands in the Great Plains region have resulted in major declines in abundance of grassland bird species. To ensure future viability of grassland bird populations, it is crucial to evaluate specific effects of environmental factors among species to determine drivers of population decline and develop effective conservation strategies. We used threshold models to quantify the effects of land cover and weather changes in "lesser prairie-chicken" and "greater prairie-chicken" ( Tympanuchus pallidicinctus and T. cupido , respectively), northern bobwhites ( Colinus virginianus ), and ring-necked pheasants ( Phasianus colchicus ). We demonstrated a novel approach for estimating landscape conditions needed to optimize abundance across multiple species at a variety of spatial scales. Abundance of all four species was highest following wet summers and dry winters. Prairie chicken and ring-necked pheasant abundance was highest following cool winters, while northern bobwhite abundance was highest following warm winters. Greater prairie chicken and northern bobwhite abundance was also highest following cooler summers. Optimal abundance of each species occurred in landscapes that represented a grassland and cropland mosaic, though prairie chicken abundance was optimized in landscapes with more grassland and less edge habitat than northern bobwhites and ring-necked pheasants. Because these effects differed among species, managing for an optimal landscape for multiple species may not be the optimal scenario for any one species.

Kansas

An empirical evaluation of landscape energetic models: Mallard and American black duck space use during the non-breeding period

Bird conservation Joint Ventures are collaborative partnerships between public agencies and private organizations that facilitate habitat management to support waterfowl and other bird populations. A subset of Joint Ventures has developed energetic carrying capacity models (ECCs) to translate regional waterfowl population goals into habitat objectives during the non-breeding period. Energetic carrying capacity models consider food biomass, metabolism, and available habitat to estimate waterfowl carrying capacity within an area. To evaluate Joint Venture ECCs in the context of waterfowl space use, we monitored 33 female mallards ( Anas platyrhynchos ) and 55 female American black ducks ( A. rubripes ) using global positioning system satellite telemetry in the central and eastern United States. To quantify space use, we measured first-passage time (FPT: time required for an individual to transit across a circle of a given radius) at biologically relevant spatial scales for mallards (3.46 km) and American black ducks (2.30 km) during the non-breeding period, which included autumn migration, winter, and spring migration. We developed a series of models to predict FPT using Joint Venture ECCs and compared them to a biological null model that quantified habitat composition and a statistical null model, which included intercept and random terms. Energetic carrying capacity models predicted mallard space use more efficiently during autumn and spring migrations, but the statistical null was the top model for winter. For American black ducks, ECCs did not improve predictions of space use; the biological null was top ranked for winter and the statistical null was top ranked for spring migration. Thus, ECCs provided limited insight into predicting waterfowl space use during the non-breeding season. Refined estimates of spatial and temporal variation in food abundance, habitat conditions, and anthropogenic disturbance will likely improve ECCs and benefit conservation planners in linking non-breeding waterfowl habitat objectives with distribution and population parameters. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

Arkansas, Delaware, Louisiana, Michigan, New Jerse

Ducks and passerines nesting in northern mixed-grass prairie treated with fire

Prescribed fire is an important, ecology-driven tool for restoration of grassland systems. However, prescribed fire remains controversial for some grassland managers because of reported reductions in bird use of recently burned grasslands. Few studies have evaluated effects of fire on grassland bird populations in the northern mixed-grass prairie region. Fewer studies yet have examined the influence of fire on nest density or survival. In our review, we found no studies that simultaneously examined effects of fire on duck and passerine nesting. During 1998—2003, we examined effects of prescribed fire on the density of upland-nesting ducks and passerines nesting in north-central North Dakota, USA. Apparent nest densities of gadwall ( Anas strepera ), mallard ( A. platyrhynchos ), and all duck species combined, were influenced by fire history of study units, although the degree of influence was not compelling. Fire history was not related to nest densities of blue-winged teal ( A. discors ), northern shoveler ( A. clypeata ), or northern pintail ( A. acuta ); however, apparent nest densities in relation to the number of postfire growing seasons exhibited a strikingly similar pattern among all duck species. When compared to ducks, fire history strongly influenced apparent nest densities of clay-colored sparrow ( Spizella pallida ), Savannah sparrow ( Passerculus sandwichensis ), and bobolink ( Dolichonyx oryzivorus ). For most species examined, apparent nest densities were lowest in recently burned units, increased during the second postfire growing season, and stabilized or, in some cases, decreased thereafter. Prescribed fire is critical for restoring the ecology of northern mixed-grass prairies and our findings indicate that reductions in nest densities are limited mostly to the first growing season after fire. Our results support the premise that upland-nesting ducks and several grassland passerine species are adapted to periodic fires occurring at a frequency similar to that of pre-Euro-American settlement of the region.

North Dakota

Evaluating autonomous acoustic surveying techniques for rails in tidal marshes

There is a growing interest toward the use of autonomous recording units (ARUs) for acoustic surveying of secretive marsh bird populations. However, there is little information on how ARUs compare to human surveyors or how best to use ARU data that can be collected continuously throughout the day. We used ARUs to conduct 2 acoustic surveys for king ( Rallus elegans ) and clapper rails ( R. crepitans ) within a tidal marsh complex along the Pamunkey River, Virginia, USA, during May–July 2015. To determine the effectiveness of an ARU in replacing human personnel, we compared results of callback point‐count surveys with concurrent acoustic recordings and calculated estimates of detection probability for both rail species combined. The success of ARUs at detecting rails that human observers recorded decreased with distance ( P ≤ 0.001), such that at <25 m, 90.3% of human‐recorded rails also were detected by the ARU, but at >75 m, only 34.0% of human‐detected rails were detected by the ARU. To determine a subsampling scheme for continuous ARU data that allows for effective surveying of presence and call rates of rails, we used ARUs to conduct 15 continuous 48‐hr passive surveys, generating 720 hr of recordings. We established 5 subsampling periods of 5, 10, 15, 30, and 45 min to evaluate ARU‐based presence and vocalization detections of rails compared with each of the full 60‐min sampling of ARU‐based detection of rails. All subsampling periods resulted in different ( P ≤ 0.001) detection rates and unstandardized vocalization rates compared with the hourly sampling period. However, standardized vocalization counts from the 30‐min subsampling period were not different from vocalization counts of the full hourly sampling period. When surveying rail species in estuarine environments, species‐, habitat‐, and ARU‐specific limitations to ARU sampling should be considered when making inferences about abundances and distributions from ARU data.

Wildlife Society Bulletin

Swallows as a sentinel species for contaminant exposure and effect studies

Tree swallows are an important model species to study the effects of contaminants in wild bird populations and have been used extensively in studies across North America. The advantages of swallows compared to other avian species are detailed. Three case histories are provided where swallows have been successfully used in Natural Resource Damage and Ecological Risk Assessments. The final two sections of this chapter are for individuals who want more in-depth information and include a summary of the chemical classes for which there are swallow data, including effect levels when known. Information provided in this section can be used to put exposure to most classes of contaminants into context with other sites across North America. Finally, commonly used endpoints, ranging from population-level down to cellular and genetic endpoints, are discussed including considerations and pitfalls, and when further work is needed to more fully understand the role of environmental and biological variation in interpreting these endpoints.

Book chapter

Paleoecological insights on fixed tree island development in the Florida Everglades: I. environmental controls

Palynological and geochemical analyses of sediment cores collected on two tree islands in the Florida Everglades indicate long-term hydrologic and chemical differences between tree islands and surrounding marshes and sloughs. Gumbo Limbo and Nuthouse tree islands are elongate, teardrop-shaped islands in Water Conservation Area 3B. Prior to tree island formation at both sites, pollen records indicate that sites on modern tree island heads were covered with sawgrass marshes with abundant weedy annuals. Such vegetation is characteristic of moderate water depths and hydroperiods with frequent droughts or disturbances. Contemporaneously deposited sediments on tree island tails indicate progressively deeper water conditions with increasing distance from the head; wetlands surrounding tree islands were covered by sloughs with deep water and long hydroperiods. Tree island formation occurred at about 1200 BC on Gumbo Limbo Island, with mature tree island vegetation established by about 800 AD. On Nuthouse Island, tree island formation occurred around 300 AD, shifting to mature tree island vegetation around 1400 AD. Thus, tree island formation began on these islands between 3.2 Ka and 1.7 Ka. Maturation of tree islands took between 1,000 and 2,000 years, and vegetation on these tree islands has been relatively stable for the last 600–1,200 years. Phosphorus levels on tree island heads have been extremely high (approximately six times greater than baseline levels in marshes) throughout the history of the sites, and phosphorus content in tree island tails began increasing when tree island formation occurred. Elevated phosphorus content may reflect the long-term presence of wading birds at these sites and provide a proxy for reconstructing the historic distribution of wading bird populations.

Florida

Effects of Phos-Chek G75-F and Silv-Ex on developing Northern Bobwhite Quail (Colinus virginianus)

Eggs of nesting birds situated in peripheral areas serving as fire breaks are at risk of being sprayed with fire control chemicals. Acute toxicity tests were conducted by immersing northern bobwhite quail eggs for 10 s in different water-based concentrations of Silv-Ex® (SE), a foam-suppressant chemical, and Phos-Chek® G75-F (PC), a fire retardant chemical, on day 4 or day 11 of incubation. An attempt was made to relate the treatment concentrations to the actual field application levels. Mortality appeared higher in most groups exposed on day 11 than on day 4, suggesting that on day 11 the extensive chorioallantoic vascular network permitted greater uptake of chemical. Only 24–60% of the embryos survived to hatch at exposure concentrations of 202, 269, and 454 g/L PC when treated on incubation day 11. At higher concentrations including 681, 956, and 1,211 g/L PC, the compound did not completely dissolve in water and clumped on eggshells, resulting in greater hatching success. Exposures to SE at 100 g/L on incubation day 11 did not significantly affect hatching success of embryos but did significantly reduce the percent hematocrit in blood compared with controls. Incubation day 11 exposure to 202 and 1,211 g/L PC led to a significant increase in plasma aspartate aminotransferase, and day 4 exposure to 1,211 g/L PC resulted in a significant increase in alanine aminotransferase. In addition to elevated liver enzymes, these treatments resulted in a decrease in the number of hepatocyte profiles (1,211 g/L PC at day 4 and day 11) and an increase in hepatocyte size (202 and 1,211 g/L PC at day 11) in hatchlings. A combination of SE and PC was synergistic (202 g/L PC and 50 g/L SE) at day 11 of incubation with respect to decreased hatching success and reduced bone lengths. However, lower concentrations of SE (10 g/L or 30 g/L) combined with 202 g/L of PC appeared antagonistic. This may be due to SE, as a surfactant, altering the ability of PC to penetrate the egg. Our results show fewer adverse effects following exposure to SE than to PC; therefore application of SE may be less harmful to breeding bird populations.

Archives of Environmental Contamination and Toxico

Diversity, origins and virulence of Avipoxviruses in Hawaiian Forest Birds

We cultured avian pox (Avipoxvirus spp.) from lesions collected on Hawai'i, Maui, Moloka'i, and 'Oahu in the Hawaiian Islands from 15 native or non-native birds representing three avian orders. Phylogenetic analysis of a 538 bp fragment of the gene encoding the virus 4b core polypeptide revealed two distinct variant clusters, with sequences from chickens (fowlpox) forming a third distinct basal cluster. Pox isolates from one of these two clusters appear closely related to canarypox and other passerine pox viruses, while the second appears more specific to Hawai'i. There was no evidence that birds were infected simultaneously with multiple pox virus variants based on evaluation of multiples clones from four individuals. No obvious temporal or geographic associations were observed and strict host specificity was not apparent among the 4b-defined field isolates. We amplified a 116 bp 4b core protein gene fragment from an 'Elepaio (Chasiempis sandwichensis) collected in 1900 on Hawai'i Island that clustered closely with the second of the two variants, suggesting that this variant has been in Hawai'i for at least 100 years. The high variation detected between the three 4b clusters provides evidence for multiple, likely independent introductions, and does not support the hypothesis of infection of native species through introduction of infected fowl. Preliminary experimental infections in native Hawai'i 'Amakihi (Hemignathus virens) suggest that the 4b-defined variants may be biologically distinct, with one variant appearing more virulent. These pox viruses may interact with avian malaria (Plasmodium relictum), another introduced pathogen in Hawaiian forest bird populations, through modulation of host immune responses. ?? 2007 Springer Science+Business Media B.V.

Conservation Genetics

Co-producing coastal bird research on the Gulf Coast through structured decision making (SDM) and constructed value of information (CVoI)

Conservation practitioners face the complex challenge of addressing global biodiversity threats within social-ecological systems with multiple jurisdictions, numerous interest groups, and changing environmental conditions. Bridging the research-to-implementation gap between scientists and managers, which integrates diverse perspectives that represent the variety of considerations impacting management outcomes can help to inform efficient and effective conservation. Avian conservation programs along the U.S. Gulf Coast exemplify these challenges, as management decisions must address diverse threats to declining coastal bird populations across large breeding, wintering, and migratory ranges while facing uncertainty surrounding the efficacy of large-scale strategies. This provides opportunities for improving management through co-produced research with structured decision making (SDM). We present a case study that demonstrates the application of co-production principles and SDM to collaboratively develop high-priority research questions informing effective avian conservation and management. Additionally, we applied a constructed value of information (CVoI) framework to identify and prioritize which uncertainties to reduce and better understand how research questions impact management actions. The integration of SDM’s five-step decision making framework ensured key principles of co-production were met, while co-production enhanced SDM outcomes by incorporating diverse perspectives and knowledge bases. CVoI further allowed participants to collectively determine final high-priority research questions in the face of complexity and uncertainty. Together, these approaches supported co-produced knowledge-generation, strategic hypothesis prioritization, and identification of research questions most likely to improve conservation decisions. This case study from the U.S. Gulf Coast demonstrates how co-produced research through SDM offers a broadly applicable approach for navigating ecological complexity and bridging the research-to-implementation gap in avian conservation.

Gulf Coast

Climatic drought and trophic disruption in an endemic subalpine Hawaiian forest bird

Overexploitation, habitat conversion, and introduced species have caused unprecedented extinctions and heavily degraded native bird populations in island ecosystems. In the Hawaiian Islands, stemming these losses has proven difficult as the highly specialized avifauna are often impacted – among other things – by poorly understood trophic disruptions as well as persistent climatic shifts. Here we investigate these dynamics by examining the trophic positions of 7 different taxa of producers and consumers across the last century in the subalpine māmane ( Sophora chrysophylla ) forest ecosystem on the island of Hawaiʻi. From museum collections and contemporary sampling, we analyzed the stable nitrogen (δ 15 N) values of producers and consumers to identify trophic and source amino acids and derive trophic enrichment constants specific to this food web. This enables us to reconstruct the diet of the palila ( Loxioides bailleui ), a critically endangered finch whose population recently declined 90 %. Our results show that from 1890 to 2006, the palila trophic position declined from 2.6 to 2.2, with cascading implications for its diet. Bayesian mixing model reconstructions indicate that palila trophic position changes likely arose from a 76 % decline (69.3 % to 16.6 % of diet) in the consumption of native moth caterpillars, and a 172 % increase (30.7 % to 83.4 %) in native plants. From the available ecosystem variables, exploratory Bayesian multiple regressions selected surface temperature changes, and the interactions of surface temperatures with drought and caterpillar parasitism as the primary drivers of these trophic changes. Despite the predicted increases of warming and drought, management interventions may build resiliency in this unique island ecosystem.

Hawaii

Carcass size and ground substrate drive detection rates of avian carcasses by human surveyors and a dog team

Accurate avian mortality estimates are essential for understanding anthropogenic impacts to bird populations and informing conservation strategies. Carcass surveys are commonly conducted by human surveyors or by detection dogs, but the factors influencing surveyor detection abilities have not been fully explored. In this study, we conducted two years of detection trials in the semi-arid high desert of southern New Mexico, USA, testing 27 human surveyors and one conservation detection dog across 1096 trials with 238 carcasses representing 50 avian species. We directly compared detection abilities between surveyor types (human and dog) and identified key factors influencing detection probabilities. The conservation detection dog exhibited a significantly higher detection probability (mean = 0.87) than human surveyors (mean = 0.49, individuals ranged 0.25–0.71), consistent with previous studies. Detection probabilities for both surveyor types were influenced by carcass size and ground substrate; detection probability was higher for larger carcasses and areas with lower vegetative complexity. We discuss our results in the context of common tradeoffs faced by managers in designing carcass surveys and how guidance may vary under different scenarios. Broadly, our study provides valuable insight that can enhance wildlife mortality monitoring, ensuring more accurate mortality estimates to inform management and conservation efforts.

New Mexico

Wetland hydrologic dynamics and duck productivity are declining in the Prairie Pothole Region, and they are linked

The Prairie Pothole Region (PPR) of North America is a globally important area hosting >50 % of North America’s breeding ducks. Ducks in the PPR depend on wetlands and grasslands which have experienced accelerated losses in extent and quality due to agriculture. While other bird populations have declined, duck abundance reached record highs recently (2013–2017). We explored this discontinuity by examining monitoring data for trends in pond numbers (wetlands with ponded water) and interannual dynamics (water-level dynamics indexed by interannual change in pond numbers) and how those factors influenced duck productivity in the PPR during 1976–2019. Over time, pond numbers increased but their interannual dynamics declined, indicating stabilization of an ecosystem evolved with a dynamic climate. Our models accounted for 67 and 71 % of variation in productivity of PPR-obligate gadwall ( Mareca strepera ) and redheads ( Aythya americana ), respectively. Breeding productivity of these sentinel species was positively correlated with pond abundance and dynamics, and systematically declined. Accordingly, our analyses revealed sensitivity of breeding ducks to systematic change in the PPR previously obscured by increasingly abundant pond numbers. Interannual pond dynamics improved duck productivity and pond dynamics have declined indicating a de facto 44-year decline in duck productivity which is likely driven by water-level stabilization decreasing quality of brood-rearing wetlands. Residual temporal effects indicated that productivity has also declined for other reasons, such as agricultural land use changes. While mechanisms behind these correlations are speculative, they demonstrate the importance of further understanding land use and climate changes in the PPR for conservation of these important species and ecosystems.

Alberta, Iowa, Manitoba, Minnesota, Montana, North

Multi-omics responses in tree swallow (Tachycineta bicolor) nestlings from the Maumee Area of Concern, Maumee River, Ohio

A multi-omics approach was utilized to identify altered biological responses and functions, and to prioritize contaminants to assess the risks of chemical mixtures in the Maumee Area of Concern (AOC), Maumee River, OH, USA. The Maumee AOC is designated by the United States Environmental Protection Agency as having significant beneficial use impairments, including degradation of fish and wildlife populations, bird or animal deformities or reproduction problems, and loss of fish and wildlife habitat. Tree swallow ( Tachycineta bicolor ) nestlings were collected at five sites along the Maumee River, which included wastewater treatment plants (WWTPs) and industrial land-use sites. Polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), polycyclic aromatic hydrocarbons (PAHs), polychlorinated dibenzo p dioxins and furans (PCDD/Fs), and chlorinated pesticide concentrations were elevated in Maumee tree swallows, relative to a remote reference site, Star Lake, WI, USA. Liver tissue was utilized for non-targeted transcriptome and targeted metabolome evaluation. A significantly differentially expressed gene cluster related to a downregulation in cell growth and cell cycle regulation was identified when comparing all Maumee River sites with the reference site. There was an upregulation of lipogenesis genes, such as PPAR signaling ( HMGCS2 , SLC22A5 ), biosynthesis of unsaturated fatty acids (FASN, SCD, ELOVL2, and FADS2), and higher lipogenesis related metabolites, such as docosapentaenoic acid (DPA), docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), and arachidonic acid (AA) at two industrial land-use sites, Ironhead and Maumee, relative to WWTP sites (Perrysburg and SideCut), and the reference site. Toledo Water, in the vicinity of the other two industrial sites and also adjacent to a WWTP, showed a mix of signals between industrial land-use and WWTP land-use. PAHs, oxychlordane, and PBDEs were determined to be the most likely causes of the differentiation in biological responses, including de novo lipogenesis and biosynthesis of unsaturated fatty acids.

Ohio

Reproductive outcomes in colonial fish-eating birds: A biomarker for developmental toxicants in Great Lakes food chains: II. Spatial variation in the occurrence and prevalence of bill defects in young double-crested cormorants in the Great Lakes, 1979–1987

Congenital malformations are relatively uncommon in most wild bird populations. Here we document the occurrence of bill malformations in double-crested cormorant ( Phalacrocorax auritus ) chicks from colonies in Green Bay and elsewhere in the Great Lakes and in reference areas off the Great Lakes, in the years 1979 through 1987. In the Great Lakes, 31,168 cormorant chicks were examined during 147 visits to 42 colonies. Seventy of these chicks had crossed or deflected bills or bills in which the mandibles differed in length. Only two of the 20,962 chicks examined during 82 visits to 35 colonies in reference areas located in the prairies and northwestern Ontario had bill defects. The probability of observing a malformed chick on a visit to a colony in Green Bay was 10 to 32 times greater than on a visit to a colony in the reference areas. Bill defects were observed at only two (6%) of the colonies in the reference areas. This proportion was exceeded in six of eight geographic regions within the Great Lakes and was highest (73%) in Green Bay colonies. The prevalence of malformed chicks in Green Bay (52.1 per 10,000)was markedly greater than in all other regions during this period. These bill defects are an example of developmental asymmetry and are an indicator of developmental stability within local populations. Other investigations in Lake Michigan suggest that chemicals such as polyhalogenated aromatic hydrocarbons (e.g., PCBs) that induce aryl hydrocarbon hydroxylase are responsible for the defects observed defects.

Great Lakes

Pesticide toxicity, effects of chlorinated hydrocarbon insecticides upon quail and pheasants

Previous studies had shown that heavy or repeated applications of DDT resulted in decreases.in bird populations, but long-range effects of this and other chlorinated hydrocarbon insecticides had not been fully evaluated. Experiments were conducted to determine toxiCitY to quail and pheasants of aldrin, dieldrin, endrin, and strobane, and to determine effects of these compounds upon survival, growth, and reproduction....Feeding of diets containing 0.02% DDT to breeding quail resulted in significant decreases in hatchability of eggs and in viability of chiCks. Similar results were obtained by feeding 0.001% dieldrin, but effects upon reproduct.ion of short-term feeding of aldrin and endrin could not be determined....Aldrin, dieldrin, and endrin were lethal to both male and female quail when fed at levels of 0.0005% in the diets. Female pheasants appeared more resistant than males to the effects of these compounds.

Journal of Agricultural and Food Chemistry

Genesis and spread of multiple reassortants during the 2016/2017 H5 avian influenza epidemic in Eurasia

Highly pathogenic avian influenza (HPAI) viruses of the H5 A/goose/Guangdong/1/96 lineage can cause severe disease in poultry and wild birds, and occasionally in humans. In recent years, H5 HPAI viruses of this lineage infecting poultry in Asia have spilled over into wild birds and spread via bird migration to countries in Europe, Africa, and North America. In 2016/2017, this spillover resulted in the largest HPAI epidemic on record in Europe and was associated with an unusually high frequency of reassortments between H5 HPAI viruses and cocirculating low-pathogenic avian influenza viruses. Here, we show that the seven main H5 reassortant viruses had various combinations of gene segments 1, 2, 3, 5, and 6. Using detailed time-resolved phylogenetic analysis, most of these gene segments likely originated from wild birds and at dates and locations that corresponded to their hosts’ migratory cycles. However, some gene segments in two reassortant viruses likely originated from domestic anseriforms, either in spring 2016 in east China or in autumn 2016 in central Europe. Our results demonstrate that, in addition to domestic anseriforms in Asia, both migratory wild birds and domestic anseriforms in Europe are relevant sources of gene segments for recent reassortant H5 HPAI viruses. The ease with which these H5 HPAI viruses reassort, in combination with repeated spillovers of H5 HPAI viruses into wild birds, increases the risk of emergence of a reassortant virus that persists in wild bird populations yet remains highly pathogenic for poultry.

PNAS

Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective

The spread of avian influenza viruses (AIV) in nature is intrinsically linked with the movements of wild birds. Wild birds are the reservoirs for the virus and their migration may facilitate the circulation of AIV between breeding and wintering areas. This cycle of dispersal has become widely accepted; however, there are few AIV studies that present cross-seasonal information. A flyway perspective is critical for understanding how wild birds contribute to the persistence of AIV over large spatial and temporal scales, with implications for how to focus surveillance efforts and identify risks to public health. This study characterized spatio-temporal infection patterns in 10,389 waterfowl at two important locations within the Pacific Flyway--breeding sites in Interior Alaska and wintering sites in California's Central Valley during 2007-2009. Among the dabbling ducks sampled, the northern shoveler (Anas clypeata) had the highest prevalence of AIV at both breeding (32.2%) and wintering (5.2%) locations. This is in contrast to surveillance studies conducted in other flyways that have identified the mallard (Anas platyrhynchos) and northern pintail (Anas acuta) as hosts with the highest prevalence. A higher diversity of AIV subtypes was apparent at wintering (n=42) compared with breeding sites (n=17), with evidence of mixed infections at both locations. Our study suggests that wintering sites may act as an important mixing bowl for transmission among waterfowl in a flyway, creating opportunities for the reassortment of the virus. Our findings shed light on how the dynamics of AIV infection of wild bird populations can vary between the two ends of a migratory flyway.

Vector-Borne and Zoonotic Diseases