SEARCH · USGS Science

Results for “The R Journal”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 307 records · Page 17Linked to original sources

USGS2026

Statewide surficial geologic map of Nebraska underscores Quaternary landscape evolution from the High Plains to the Central Lowland

Surficial geologic mapping in Nebraska has been conducted primarily at the 1:24,000 scale since the mid-1990s, although there have also been limited efforts to map generalized Quaternary and surficial geology within the state and the region. We compiled and evaluated disparate maps (1:24,000–1:1,000,000) and datasets—including geologic, soil and soil parent material, and geomorphic maps as well as LiDAR derivatives—to produce a single 1:500,000 scale surficial geologic map of Nebraska that is the first of its kind. This new map provides a coarse-scale surficial geologic map that will be incorporated into a nationwide U.S. Geological Survey Quaternary geologic map. It also reflects the variation and uniqueness of physical landscapes in the state, where the Great Plains and Central Lowland physiographic provinces meet, further developing a richer interdisciplinary understanding of regional geomorphology in the heart of North America.

Nebraska↗

USGS2007

The FORE-SCE model: a practical approach for projecting land cover change using scenario-based modeling

A wide variety of ecological applications require spatially explicit, historic, current, and projected land use and land cover data. The U.S. Land Cover Trends project is analyzing contemporary (1973–2000) land-cover change in the conterminous United States. The newly developed FORE-SCE model used Land Cover Trends data and theoretical, statistical, and deterministic modeling techniques to project future land cover change through 2020 for multiple plausible scenarios. Projected proportions of future land use were initially developed, and then sited on the lands with the highest potential for supporting that land use and land cover using a statistically based stochastic allocation procedure. Three scenarios of 2020 land cover were mapped for the western Great Plains in the US. The model provided realistic, high-resolution, scenario-based land-cover products suitable for multiple applications, including studies of climate and weather variability, carbon dynamics, and regional hydrology.

Journal of Land Use Science↗

USGS2013

Projected surface radiative forcing due to 2000--2050 land-cover land-use albedo change over the eastern United States

Satellite-derived contemporary land-cover land-use (LCLU) and albedo data and modeled future LCLU are used to study the impact of LCLU change from 2000 to 2050 on surface albedo and radiative forcing for 19 ecoregions in the eastern United States. The modeled 2000–2050 LCLU changes indicate a future decrease in both agriculture and forested land and an increase in developed land that induces ecoregion radiative forcings ranging from −0.175 to 0.432 W m −2 driven predominately by differences in the area and type of LCLU change. At the regional scale, these projected LCLU changes induce a net negative albedo decrease (−0.001) and a regional positive radiative forcing of 0.112 W m −2 . This overall positive forcing (i.e., warming) is almost 4 times greater than that estimated for documented 1973–2000 LCLU albedo change published in a previous study using the same methods.

Journal of Land Change Science↗

USGS2017

Human drivers, biophysical changes, and climatic variation affecting contemporary cropping proportions in the northern prairie of the U.S

Grassland to cropland conversion in the northern prairie of the United States has been a topic of recent land use change studies. Within this region more corn and soybeans are grown now (2017) than in the past, but most studies to date have not examined multi-decadal trends and the synergistic web of socio-ecological driving forces involved, opting instead for short-term analyses and easily targeted agents of change. This paper examines the coalescing of biophysical and socioeconomic driving forces that have brought change to the agricultural landscape of this region between 1980 and 2013. While land conversion has occurred, most of the region’s cropland in 2013 had been previously cropped by the early 1980s. Furthermore, the agricultural conditions in which crops were grown during those three decades have changed considerably because of non-biophysical alterations to production practices and changing agricultural markets. Findings revealed that human drivers played more of a role in crop change than biophysical changes, that blending quantitative and qualitative methods to tell a more complete story of crop change in this region was difficult because of the synergistic characteristics of the drivers involved, and that more research is needed to understand how farmers make crop choice decisions.

Minnesota, North Dakota, South Dakota↗

USGS2018

Urban growth and landscape connectivity threats assessment at Saguaro National Park, Arizona, USA

Urban and exurban expansion results in habitat and biodiversity loss globally. We hypothesize that a coupled-model approach could connect urban planning for future cities with landscape ecology to consider wildland habitat connectivity. Our work combines urban growth simulations with models of wildlife corridors to examine how species will be impacted by development to test this hypothesis. We leverage a land use change model (SLEUTH) with structural and functional landscape-connectivity modeling techniques to ascertain the spatial extent and locations of connectivity related threats to a national park in southern Arizona, USA, and describe how protected areas might be impacted by urban expansion. Results of projected growth significantly altered structural connectivity (80%) when compared to current (baseline) corridor conditions. Moreover, projected growth impacted functional connectivity differently amongst species, indicating resilience of some species and near-complete displacement of others. We propose that implementing a geospatial-design-based model will allow for a better understanding of the impacts management decisions have on wildlife populations. The application provides the potential to understand both human and environmental impacts of land-system dynamics, critical for long-term sustainability.

Arizona↗

USGS2002

Emsian synorogenic paleogeography of the Maine Applachians

The Acadian deformation front in the northern Appalachians of Maine and New Hampshire can now be closely located during the early Emsian (Early Devonian; 408-406 Ma). Tight correlations between paleontologically and isotopically dated rocks are possible only because of a new 408-Ma time scale tie point for the early Emsian. The deformation front lay between a belt of Lower Devonian flysch and molasse that were deposited in an Acadian foreland basin and had not yet been folded and a belt of early Emsian plutons that intruded folded Lower Devonian rocks. This plutonic belt includes the newly dated Ore Mountain gabbro (U/Pb; 406 Ma), which hosts magmatic-sulfide mineralization. Along the deformation front, a 407-Ma pluton that locally truncates Acadian folds (Katahdin) was the feeder to volcanic rocks (Traveler Rhyolite; 406-407 Ma) that are part of the foreland-basin succession involved in these same folds. The Emsian igneous rocks thus define a syncollisional magmatic province that straddled the deformation front. These findings bear on three alternative subduction geometries for the Acadian collision.

Journal of Geology↗

USGS2008

Sequential solvent extraction for forms of antimony in five selected coals

Abundance of antimony in bulk samples has been determined in five selected coals, three coals from Huaibei Coalfield, Anhui, China, and two from the Illinois Basin in the United States. The Sb abundance in these samples is in the range of 0.11-0.43 ??g/g. The forms of Sb in coals were studied by sequential solvent extraction. The six forms of Sb are water soluble, ion changeable, organic matter bound, carbonate bound, silicate bound, and sulfide bound. Results of sequential extraction show that silicate-bound Sb is the most abundant form in these coals. Silicate- plus sulfide-bound Sb accounts for more than half of the total Sb in all coals. Bituminous coals are higher in organic matterbound Sb than anthracite and natural coke, indicating that the Sb in the organic matter may be incorporated into silicate and sulfide minerals during metamorphism. ?? 2008 by The University of Chicago. All rights reserved.

Journal of Geology↗

USGS2025

Identical sequence types of Yersinia ruckeri associated with lethal disease in wild-caught invasive Blue Catfish and cultured hybrid catfish (Channel Catfish ♀ × Blue Catfish ♂) from disparate aquatic ecosystems

Objective The Blue Catfish Ictalurus furcatus is commonly raised in warmwater aquaculture in the United States to produce Channel Catfish I. punctatus × Blue Catfish hybrids. It is also a prominent aquatic invasive species of concern in the mid-Atlantic region of the United States. Here, Yersina ruckeri was isolated from moribund Blue Catfish and hybrid catfish from disparate regions of the USA. The goal of the research here was to compare these Y. ruckeri strains to each other and other known strains for which adequate sequence data was available. In addition, we sought to determine if the strain from Blue Catfish was pathogenic to Rainbow Trout Oncorhynchus mykiss . Methods Moribund hybrid catfish from culture ponds in Mississippi were processed for diagnostic evaluation in March 2016. In April 2022, a moribund Blue Catfish specimen was collected from a tributary of the Nanticoke River in Maryland. Bacterial isolates were identified and characterized using biochemical tests, antimicrobial sensitivity screening, serotyping, and complete or partial genome sequencing. Disease pathology was described via histology. The isolate from Blue Catfish was used in challenge experiments to determine if it was pathogenic to Rainbow Trout. Multilocus sequencing typing was conducted using the PubMLST database. Results Biochemical testing was consistent with Y. ruckeri . A draft genome of the Y. ruckeri isolate was assembled based on Oxford Nanopore Technology sequencing and identified a single genomic replicon (3,791,418 bp) consistent in size to other Y. ruckeri genomes and a pLT plasmid (60, 933 bp). The challenge study demonstrated no significant virulence of this isolate for Rainbow Trout ( Y. ruckeri ). This isolate was most similar to other strains isolated from ictalurids. Notably, the gyrase B gene from this isolate was identical to that of archived strains isolated from moribund Mississippi hybrid catfish aquaculture during 2016 and these isolates share identical PubMLST sequence type profiles. Similarly, they shared a pLT plasmid that differed by only 6 bp. This plasmid has never been reported from trout isolates and appears to be unique to ictalurids. Conclusions Analyses here provide preliminary genetic evidence that geographically distant (Maryland and Mississippi, USA) isolates of Y. ruckeri from ictalurids are genetically similar to each other and Y. ruckeri (strain SC09) that infects ictalurids in China. This strain is not a biothreat to Rainbow Trout at typical culture temperatures.

Journal of Aquatic Animal Health↗

USGS2020

Determination of malachite green residues in the eggs, fry, and adult muscle-tissue of rainbow-trout (Oncorhynchus-mykiss)

Malachite green, an effective antifungal therapeutant used in fish culture, is a known teratogen. We developed a method to simultaneously detect both the chromatic and leuco forms of malachite green residues in the eggs, fry, and adult muscle tissue of rainbow trout ( Oncorhynchus mykiss ). Homogenates of these tissues were fortified with [ 14 C] malachite green chloride and extracted with 1% (v/v) acetic acid in acetonitrile or in methanol. The extracts were partitioned with chloroform, dried, redissolved in mobile phase, and analyzed by liquid chromatography (LC) with postcolumn oxidation of leuco malachite green to the chromatic form. LC fractions were collected every 30 s for quantitation by scintillation counting. Recoveries of total [ 14 C] malachite green chloride residue were 85 and 98% in eggs fortified with labeled malachite green at concentrations of 0.5 and 1.00 μg/g, respectively; 68% in fry similarly fortified at a concentration of 0.65 μg/g; and 66% in muscle homogenate similarly fortified at a level of 1.00 μg/g. The method was tested under operational conditions by exposing adult rainbow trout to 1.00 mg/L [ 14 C] malachite green chloride bath for 1 h. Muscle samples analyzed by sample oxidation and scintillation counting contained 1.3 and 0.5 μg/g total malachite green chloride residues immediately after exposure and after a 5-day withdrawal period, respectively.

Journal of AOAC International↗

USGS2022

Using surrogate insects in acid bioassays for development of new controls for Varroa destructor (Arachnida: Varroidae)

Resistance to traditional synthetic compounds by Varroa destructor Anderson and Trueman and shortcomings of the organic acid class of acaracides commonly used in varroa management requires continual development of new controls. V. destructor , however, are difficult to obtain for use in control bioassays because they are obligate parasites that cannot be easily reared outside of a honey bee colony. We conducted bioassays using other, more easily obtainable species to find organisms that could be used as surrogates for V. destructor when testing new potential controls. We compared the toxicities of acetic acid, lactic acid, formic acid, and oxalic acid at 0.005%, 0.05%, 0.5%, 5%, and 50% (20% oxalic acid only) concentrations based on natural volatility (nonheated) for the control of two beetle species, Oryzaephilus surinamensis L. and Alphitobius diaperinus Panzer, greater wax moth larvae, Galleria mellonella L., and V. destructor . The assay results were consistent across all species with formic acid and acetic acid showing 100% mortality of all four test species at 50% concentration. The assays also provided insight into the method of application (vaporization or contact) needed to cause mortality. Our results show that other organisms can be used in place of V. destructor for initial testing of acids and possibly other chemicals for control of the ectoparasite.

Journal of Economic Entomology↗

USGS2022

Give and take: Effects of genetic admixture on mutation load in endangered Florida panthers

Genetic admixture is a biological event inherent to genetic rescue programs aimed at the long-term conservation of endangered wildlife. Although the success of such programs can be measured by the increase in genetic diversity and fitness of subsequent admixed individuals, predictions supporting admixture costs to fitness due to the introduction of novel deleterious alleles are necessary. Here, we analyzed nonsynonymous variation from conserved genes to quantify and compare levels of mutation load (i.e. proportion of deleterious alleles and genotypes carrying these alleles) among endangered Florida panthers and non-endangered Texas pumas. Specifically, we used canonical (i.e. non-admixed) Florida panthers, Texas pumas, and F 1 (canonical Florida × Texas) panthers dating from a genetic rescue program and Everglades National Park panthers with Central American ancestry resulting from an earlier admixture event. We found neither genetic drift nor selection significantly reduced overall proportions of deleterious alleles in the severely bottlenecked canonical Florida panthers. Nevertheless, the deleterious alleles identified were distributed into a disproportionately high number of homozygous genotypes due to close inbreeding in this group. Conversely, admixed Florida panthers (either with Texas or Central American ancestry) presented reduced levels of homozygous genotypes carrying deleterious alleles but increased levels of heterozygous genotypes carrying these variants relative to canonical Florida panthers. Although admixture is likely to alleviate the load of standing deleterious variation present in homozygous genotypes, our results suggest that introduced novel deleterious alleles (temporarily present in heterozygous state) in genetically rescued populations could potentially be expressed in subsequent generations if their effective sizes remain small.

Journal of Heredity↗

USGS2018

Hatchery strain contributions to emerging wild lake trout populations in Lake Huron

Recent assessments indicate the emergence of naturally produced lake trout ( Salvelinus namaycush ) recruitment throughout Lake Huron in the North American Laurentian Great Lakes (>50% of fish <7 years). Because naturally produced fish derived from different stocked hatchery strains are unmarked, managers cannot distinguish strains contributing to natural recruitment. We used 15 microsatellite loci to identify strains of naturally produced lake trout ( N = 1567) collected in assessment fisheries during early (2002–2004) and late (2009–2012) sampling periods. Individuals from 13 American and Canadian hatchery strains ( N = 1143) were genotyped to develop standardized baseline information. Strain contributions were estimated using a Bayesian inferential approach. Deviance information criteria were used to compare models evaluating strain contributions at different spatial and temporal scales. The best performing models were the most complex models, suggesting that hatchery strain contributions to naturally produced lake trout varied spatially among management districts and temporally between time periods. Contributions of Seneca strain lake trout were consistently high across most management districts, with contributions increasing from early to late time periods (estimates ranged from 52% to 94% for the late period across 8 of 9 districts). Strain contributions deviated from expectations based on historical stocking levels, indicating strains differed with respect to survival, reproductive success, and/or dispersal. Knowledge of recruitment levels of strains stocked in different management districts, and how strain-specific recruitment varies temporally, spatially, and as a function of local or regional stocking is important to prioritize strains for future stocking and management of the transition process from primarily hatchery to naturally produced stocks.

Journal of Heredity↗

USGS2026

When the desert dries: Rainfall drives conflicts and conservation challenges for onager (Equus hemionus onager)

Increasingly, the conservation of large and wide-ranging animals is challenged by environmental variability, static boundaries of protected areas, and the expansion of human activities. The Critically Endangered Onager ( Equus hemionus onager ) exemplifies these issues in Qatrouiyeh National Park (QNP) and the surrounding Bahram-e-Goor Protected Area (BPA) in Iran. Using GPS telemetry data from 9 adult females tracked over 2 years, we examined seasonal patterns in movement and incursions into cultivated lands in 2017 and 2018. Net squared displacement analyses indicated that most individuals exhibited range-resident behavior with occasional nomadic movements, with no evidence for migration (i.e., predictable movements to and from distinct seasonal ranges). Both monthly home range size and monthly movement rate varied seasonally, peaking in late spring and early summer (May–July). Individual home ranges were between 257 and 1,928 km 2 , while the extrapolated population-level home range (718 km 2 ; 95% confidence interval = 276–1368) extended well outside QNP, covering large portions of the BPA. Occurrence distributions also expanded beyond the protected area into adjacent cultivated lands, highlighting the use of human-occupied areas by onagers. We recorded 2,285 (out of 72,168) GPS locations within cultivated lands and their surrounding 50 m buffer, with 60% of these incursions occurring immediately adjacent to QNP. Most incursions occurred at night and were strongly associated with both season and cumulative rainfall over the preceding 9 months. These findings emphasize how rainfall-driven variability in resource dynamics shapes the spatial distribution and behavior of onagers, thus elevating the risk of conflict with humans. The scale and seasonality of Onager movements highlight the need for flexible, landscape-level conservation strategies that extend beyond fixed park boundaries to encompass critical habitats and to mitigate conflict across the broader region.

Bahram-e-Goor Protected Area, Qatrouiyeh National ↗

USGS2016

Reproduction in moose at their southern range limit

Reproduction is a critical fitness component in large herbivores. Biogeographic models predict that populations occurring at the edges of the range may have compromised reproductive rates because of inferior habitat at range peripheries. When reproductive rates are chronically low, ungulate populations may lack the resiliency to rebound quickly after periods of environmental stress, and this effect may be greatest for heat-sensitive organisms at their southern range limit. To assess the demographic vulnerability of moose ( Alces alces ), we studied relationships between reproductive rates, maternal age, and rump fat in the southernmost naturally occurring moose population in North America. For prime-aged moose in our study, pregnancy rates were high (92%), but moose aged < 3 or > 9 years had low pregnancy rates (32% and 38%, respectively). The relationship between rump fat and pregnancy was nonlinear such that a threshold of at least 2mm of rump fat yielded a high probability of being pregnant midwinter. In contrast, among pregnant moose, the probability of both producing a calf and recruiting it until spring increased linearly with rump fat. We also conducted a meta-analysis of pregnancy and twinning rates for adult (≥ 2 years) moose across a latitudinal gradient to compare reproductive rates from our study to other populations in North America. Moose living at southern latitudes tended to have lower reproductive rates than those living in the core of moose range, implying that southern moose populations may be demographically more vulnerable than northern moose populations.

Utah↗

USGS2016

Dog days of summer: Influences on decision of wolves to move pups

For animals that forage widely, protecting young from predation can span relatively long time periods due to the inability of young to travel with and be protected by their parents. Moving relatively immobile young to improve access to important resources, limit detection of concentrated scent by predators, and decrease infestations by ectoparasites can be advantageous. Moving young, however, can also expose them to increased mortality risks (e.g., accidents, getting lost, predation). For group-living animals that live in variable environments and care for young over extended time periods, the influence of biotic factors (e.g., group size, predation risk) and abiotic factors (e.g., temperature and precipitation) on the decision to move young is unknown. We used data from 25 satellite-collared wolves ( Canis lupus ) in Idaho, Montana, and Yellowstone National Park to evaluate how these factors could influence the decision to move pups during the pup-rearing season. We hypothesized that litter size, the number of adults in a group, and perceived predation risk would positively affect the number of times gray wolves moved pups. We further hypothesized that wolves would move their pups more often when it was hot and dry to ensure sufficient access to water. Contrary to our hypothesis, monthly temperature above the 30-year average was negatively related to the number of times wolves moved their pups. Monthly precipitation above the 30-year average, however, was positively related to the amount of time wolves spent at pup-rearing sites after leaving the natal den. We found little relationship between risk of predation (by grizzly bears, humans, or conspecifics) or group and litter sizes and number of times wolves moved their pups. Our findings suggest that abiotic factors most strongly influence the decision of wolves to move pups, although responses to unpredictable biotic events (e.g., a predator encountering pups) cannot be ruled out.

Journal of Mammalogy↗

USGS1998

Reservoir competence of Microtus pennsylvanicus (Rodentia: Cricetidae) for the Lyme disease spirochete, Borrelia burgdorferi

The reservoir competence of the meadow vole, Microtus pennsylvanicus Ord, for the Lyme disease spirochete Borrelia burgdorferi Johnson, Schmid, Hyde, Steigerwalt & Brenner was established on Patience Island, RI. Meadow voles were collected from 5 locations throughout Rhode Island. At 4 of the field sites, M. pennsylvanicus represented only 4.0% ( n = 141) of the animals captured. However, on Patience Island, M. pennsylvanicus was the sole small mammal collected ( n = 48). Of the larval Ixodes scapularis Say obtained from the meadow voles on Patience Island, 62% ( n = 78) was infected with B. burgdorferi . Meadow voles from all 5 locations were successfully infected with B. burgdorferi in the laboratory and were capable of passing the infection to xenodiagnostic I. scapularis larvae for 9 wk. We concluded that M. pennsylvanicus was physiologically capable of maintaining B. burgdorferi infection. However, in locations where Peromyscus leucopus (Rafinesque) is abundant, the role of M. pennsylvanicus as a primary reservoir for B. burgdorferi was reduced.

Journal of Medical Entomology↗

USGS1969

Rheology of basalt in the melting range

Experimental data have been obtained for viscosities of tholeiite melts at temperatures from 1300 to 1120 °Cat 1 atm, using a concentric cylinder viscometer. The apparent viscosity increases more than two orders of magnitude between 1200 and 1120 °C (0–25 per cent crystallization) for shear rates of about 10 sec -1 and even more for lower shear rates. Non-Newtonian behaviour of ‘pseudo-plastic type’ becomes extremely pronounced at temperatures below about 1130 °C. At these temperatures, differences of less than 5 °C can produce changes in apparent viscosity amounting to orders of magnitude. These observations have led to the conclusion that the heat of deformation must itself influence rheological behaviour in the melting range. An equation for thermal energy balances and their rates of change is constructed and placed in a non-dimensional form that has been given published solutions by I. J. Gruntfest (1963) relating the shear stress, rate of strain, and temperature through the temperature dependence of viscosity. The results show that in an adiabatic system the heating rate increases with time so that the temperature eventually runs out of bounds, a process termed ‘thermal feedback’ by Gruntfest. A hypothesis of shear melting is derived on the basis of a simplified viscosity function extrapolated to the solidus temperature. The hypothesis is applied to magma generation in the earth on the basis of dimensional arguments. It is also suggested that thermal instabilities give rise to a sort of viscous failure responsible for deep-focus earthquakes, and that the two phenomena have the same cause relating ultimately to a gravitational energy source.

Journal of Petrology↗

USGS1973

Oxidation during magmatic differentiation, Finnmarka Complex, Oslo area, Norway: Part 2, the mafic silicates

Electron-microprobe analyses are presented for pyroxene, amphibole, and biotite from monzonite, granodiorite, and granite at Finnmarka, Norway. Compositional trends measured in biotite, present in all three rock types, and in amphibole, present in the monzonite and granodiorite, are markedly atypical and are interpreted as reflecting crystallization under progressively more oxidizing conditions. The average Fe/Fe + Mg for biotites from successively more silicic rock types changes from 0.64 → 0.35 → 0.28, and for amphiboles changes from 0.58 in the monzonite to 0.29 in the granodiorite. Analyses of selected areas within amphibole grains in the granodiorite show marked chemical variations, although single-crystal X-ray photographs are sharp and do not reveal multiple phases. On the basis of 33 such analyses, four coupled substitutions are identified as operative; the most unusual finding is the relation of 1 Ti cation to 4 Al IV cations in the unit cell. Variations within individual amphibole grains of the granodiorite resemble changes noted in evolution of amphibole composition from monzonite to granodiorite and are interpreted as reflecting progressive oxidation. Consideration of these data for the mafic silicates, data for the opaque oxides, and the extensive formation of sphene in the granodiorite, has allowed development of schematic reactions and an overall picture of magmatic environment and evolution at Finnmarka. Crystallization apparently took place at PH 2 o of 1000 bars or less and a temperature of about 700 °C. The trend of oxidation during differentiation is more extreme than any heretofore reported. Amphiboles, as well as biotites, may participate in oxidation reactions and may reflect the oxidation-reduction processes that occurred during magmatic evolution.

Oslo↗