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At least 307 records · Page 17Linked to original sources

USGS2013

CEOS visualization environment (COVE) tool for intercalibration of satellite instruments

Increasingly, data from multiple instruments are used to gain a more complete understanding of land surface processes at a variety of scales. Intercalibration, comparison, and coordination of satellite instrument coverage areas is a critical effort of international and domestic space agencies and organizations. The Committee on Earth Observation Satellites Visualization Environment (COVE) is a suite of browser-based applications that leverage Google Earth to display past, present, and future satellite instrument coverage areas and coincident calibration opportunities. This forecasting and ground coverage analysis and visualization capability greatly benefits the remote sensing calibration community in preparation for multisatellite ground calibration campaigns or individual satellite calibration studies. COVE has been developed for use by a broad international community to improve the efficiency and efficacy of such calibration planning efforts, whether those efforts require past, present, or future predictions. This paper provides a brief overview of the COVE tool, its validation, accuracies, and limitations with emphasis on the applicability of this visualization tool for supporting ground field campaigns and intercalibration of satellite instruments.

IEEE Transactions on Geoscience and Remote Sensing↗

USGS2019

Extreme site fidelity as an optimal strategy in an unpredictable and homogeneous environment

1.Animal site fidelity structures space use, population demography and ultimately gene flow. Understanding the adaptive selection for site fidelity patterns provides a mechanistic understanding to both spatial and population processes. This can be achieved by linking space use with environmental variability (spatial and temporal) and demographic parameters. However, rarely is the environmental context that drives the selection for site fidelity behaviour fully considered. 2. We use ecological theory to understand whether the spatial and temporal variability in breeding site quality can explain the site fidelity behaviour and demographic patterns of Gunnison sage-grouse (Centrocercus minimus). We examined female site fidelity patterns across multiple spatial scales: proximity of consecutive year nest locations, space-use overlap within and across the breeding and brooding seasons, and fidelity to a breeding patch. We also examined the spatial and temporal variability in nest, chick, juvenile and adult survival. 3. We found Gunnison sage-grouse to be site faithful to their breeding patch, area of use within the patch and generally where they nest, suggesting an “Always Stay” site fidelity strategy. This is an optimal evolutionary strategy when site quality is unpredictable. Further, we found limited spatial variability in survival within age groups, suggesting little demographic benefit to moving among patches. We suggest Gunnison sage-grouse site fidelity is driven by the unpredictability of predation in a relatively homogeneous environment, the lack of benefits and likely costs to moving across landscape patches and leaving known lek and breeding/brooding areas. 4. Space use and demography are commonly studied separately. More so, site fidelity patterns are rarely framed in the context of ecological theory, beyond questions related to the win-stay:lose-switch rule. To move beyond describing patterns and understand the adaptive selection driving species movements and their demographic consequences require integrating movement, demography and environmental variability in a synthetic framework. 5. Site fidelity theory provides a coherent framework to simultaneously investigate the spatial and population ecology of animal populations. Using it to frame ecological questions will lead to a more mechanistic understanding of animal movement, spatial population structuring and meta-population dynamics.

Colorado↗

USGS2023

Identifying mechanisms underlying individual body size increases in a changing, highly seasonal environment: The growing trout of West Brook

As air temperature increases, it has been suggested that smaller individual body size may be a general response to climate warming. However, for ectotherms inhabiting cold, highly seasonal environments, warming temperatures may increase the scope for growth and result in larger body size. In a long-term study of individual brook trout Salvelinus fontinalis and brown trout Salmo trutta inhabiting a small stream network, individual lengths increased over the course of 15 years. As size-selective gains and losses to the population acted to reduce body sizes and mean body size at first tagging in the autumn (<60 mm) were not observed to change substantially over time, the increase in body size was best explained by higher individual growth rates. For brook trout, increasing water temperatures during the spring (when both trout species accomplish most of their total annual growth) was the primary driver of growth rate for juvenile fish and the environmental factor which best explained increases in individual body size over time. For brown trout, by contrast, reduction in and subsequent elimination of juvenile Atlantic salmon Salmo salar midway through the study period explained most of the increases in juvenile growth and body size. In addition to these major trends, a considerable amount of interannual variation in trout growth and body size was explained by other abiotic (stream flow) and biotic (population density) factors with the direction and magnitude of these effects differing by season, age-class and species. For example, stream flow was the dominant growth rate driver for adult fish with strong positive effects in the summer and autumn, but flow variation could not explain increases in body size as we observed no trend in flow. Overall, our work supports the general contention that for high-latitude ectotherms, increasing spring temperatures associated with a warming climate can result in increased growth and individual body size (up to a point), but context-dependent change in other factors can substantially contribute to both interannual variation and longer-term effects.

Massachusetts↗

USGS2018

Modelling sound attenuation in heterogeneous environments for improved bioacoustic sampling of wildlife populations

Acoustic sampling methods are becoming increasingly important in biological monitoring. Sound attenuation is one of the most important dynamics affecting the utility of acoustic data as it directly affects the probability of detection of individuals by acoustic sensor arrays and especially the localization of acoustic signals necessary in telemetry studies. Therefore, models of sound attenuation are necessary to make efficient use of acoustic data in ecological monitoring and assessment applications. Models of attenuation in widespread use are based on Euclidean distance between source and sensor, which is justified under spherical attenuation of sound waves in homogeneous environments. In this paper, I develop a model of sound attenuation based on a non‐Euclidean cost‐weighted distance metric which contains attenuation coefficients that characterize the attenuation of sound due to environmental heterogeneity in the vicinity of an acoustic sensor array. I show that parameters of the proposed attenuation model can be estimated by maximum likelihood using experimental data from an array of fixed sources, thus allowing investigators who use bioacoustic methods to devise explicit models of sound attenuation in situ and apply them to localization of sources and density estimation. In addition, drawing on analogy with spatial capture–recapture models, I argue that parameters of the non‐Euclidean model of attenuation can be estimated when source locations are unknown . Thus, the models can be applied to real field studies which require estimation of attenuation parameters or localization of signals. Models of heterogeneous sound attenuation allow more accurate descriptions of acoustic monitoring data, and therefore should produce more accurate estimates of ecological parameters of interest, including source locations, density, and movement trajectories. Moreover, the ability to test specific hypotheses about the effects of habitat and landscape structure on sound attenuation can improve the design of acoustic monitoring arrays and lead to more efficient deployment of acoustic sensing technology.

Methods in Ecology and Evolution↗

USGS2025

Non-native bird populations respond differently to their environment and exhibit shifts in ecological niche limits across continents

Aim The degree to which species' niches remain stable over space and time–the niche conservatism hypothesis–is critical for predicting species' responses to environmental change. Tests of this hypothesis typically focus on changes in niche centroids and boundaries. An outstanding question is whether species' environmental associations differ within the interior of their niche space–that is, across the full range of occupied conditions–in original versus novel geographic space. Location Europe and North America. Time Period 1997–2018. Major Taxa Studied Birds. Methods We used over 400,000 observations collected over 22 years and across 28 countries to explore whether two common songbird species—European starling ( Sturnus vulgaris ) and house sparrow ( Passer domesticus ) – exhibit niche conservatism between their native European and non-native North American ranges. We tested for niche conservatism via (1) an ordination approach that quantified change in niche shape and boundaries, and (2) generalised linear mixed effects models to quantify how abundance varied with the interaction between continent and climate or land cover variables. Results The ordination analysis indicated that both European starling and house sparrow exhibited niche conservatism between Europe and North America. However, abundance models revealed continental differences in how the species responded to temperature and land cover. The abundance models also revealed that areas with wetter conditions that were occupied by both species in their native European ranges were available but unoccupied in their non-native North American ranges (i.e., niche unfilling). Main Conclusions Our work demonstrates that species can exhibit apparent consistency in niche boundaries but varied abundance responses to the environment within niche boundaries. Expanding the study of niche conservatism to explore changes both at the edge of and within niche boundaries would improve the ability to assess and predict species' invasion risk or sensitivity to ongoing global change.

Diversity and Distributions↗

USGS2013

Links between riparian landcover, instream environment and fish assemblages in headwater streams of south-eastern Brazil

We hypothesised and tested a hierarchical organisation model where riparian landcover would influence bank composition and light availability, which in turn would influence instream environments and control fish assemblages. The study was conducted during the dry season in 11 headwater tributaries of the Sorocaba River in the upper Paraná River Basin, south-eastern Brazil. We focused on seven environmental factors each represented by one or multiple environmental variables and seven fish functional traits each represented by two or more classes. Multivariate direct gradient analyses suggested that riparian zone landcover can be considered a higher level causal factor in a network of relations that control instream characteristics and fish assemblages. Our results provide a framework for a hierarchical conceptual model that identifies singular and collective influences of variables from different scales on each other and ultimately on different aspects related to stream fish functional composition. This conceptual model is focused on the relationships between riparian landcover and instream variables as causal factors on the organisation of stream fish assemblages. Our results can also be viewed as a model for headwater stream management in that landcover can be manipulated to influence factors such as bank composition, substrates and water quality, whereas fish assemblage composition can be used as indicators to monitor the success of such efforts.

Sorocaba River Basin↗

USGS2023

Evaluating population trends of juvenile Atlantic Sturgeon at low abundance in a dynamic estuarine environment (Hudson River, New York)

Evaluating population trends in dynamic estuarine environments can be challenging, especially when survey data include a high percentage of zero observations. In fishery-independent surveys, zeros that come from reduced susceptibility to sample gears and reduced availability of the population to the survey impact survey catchability and negatively bias relative abundance indices. A zero-inflated negative binomial model was used to standardize a juvenile Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) relative abundance index (Hudson River, New York) that included a high proportion (42%) of zero observations and intra- and interannually variable covariates. Reduced susceptibility was related to low water temperature, with the percentage of zeroes increasing rapidly below 7°C. Availability was influenced by temperature and distance to salt front, as catch rates increased with temperature and peaked in mesohaline waters ~27 km downstream of the predicted salt front. An alternative index suggested significant population growth ( r = 0.15; p -value = 0.007) occurred from 2004 to 2015. The zero-inflated model helped better understand Hudson River juvenile Atlantic Sturgeon ecology and relative trends in abundance, to better inform future management and monitoring decisions along the Atlantic Coast.

New York↗

USGS2020

Insects in high-elevation streams: Life in extreme environments imperiled by climate change

Climate change is altering conditions in high-elevation streams worldwide, with largely unknown effects on resident communities of aquatic insects. Here, we review the challenges of climate change for high-elevation aquatic insects and how they may respond, focusing on current gaps in knowledge. Understanding current effects and predicting future impacts will depend on progress in three areas. First, we need better descriptions of the multivariate physical challenges and interactions among challenges in high-elevation streams, which include low but rising temperatures, low oxygen supply and increasing oxygen demand, high and rising exposure to ultraviolet radiation, low ionic strength, and variable but shifting flow regimes. These factors are often studied in isolation even though they covary in nature and interact in space and time. Second, we need a better mechanistic understanding of how physical conditions in streams drive the performance of individual insects. Environment-performance links are mediated by physiology and behavior, which are poorly known in high-elevation taxa. Third, we need to define the scope and importance of potential responses across levels of biological organization. Short-term responses are defined by the tolerances of individuals, their capacities to perform adequately across a range of conditions, and behaviors used to exploit local, fine-scale variation in abiotic factors. Longer term responses to climate change, however, may include individual plasticity and evolution of populations. Whether high-elevation aquatic insects can mitigate climatic risks via these pathways is largely unknown.

Global Change Biology↗

USGS2007

Using SHRIMP zircon dating to unravel tectonothermal events in arc environments. The early Palaeozoic arc of NW Iberia revisited

Dating of zircon cores and rims from granulites developed in a shear zone provides insights into the complex relationship between magmatism and metamorphism in the deep roots of arc environments. The granulites belong to the uppermost allochthonous terrane of the NW Iberian Massif, which forms part of a Cambro-Ordovician magmatic arc developed in the peri-Gondwanan realm. The obtained zircon ages confirm that voluminous calc-alkaline magmatism peaked around 500Ma and was shortly followed by granulite facies metamorphism accompanied by deformation at c. 480Ma, giving a time framework for crustal heating, regional metamorphism, deformation and partial melting, the main processes that control the tectonothermal evolution of arc systems. Traces of this arc can be discontinuously followed in different massifs throughout the European Variscan Belt, and we propose that the uppermost allochthonous units of the NW Iberian Massif, together with the related terranes in Europe, constitute an independent and coherent terrane that drifted away from northern Gondwana prior to the Variscan collisional orogenesis.

Terra Nova↗

USGS2007

Ammonia-oxidizing bacterial community composition in estuarine and oceanic environments assessed using a functional gene microarray

The relationship between environmental factors and functional gene diversity of ammonia-oxidizing bacteria (AOB) was investigated across a transect from the freshwater portions of the Chesapeake Bay and Choptank River out into the Sargasso Sea. Oligonucleotide probes (70-bp) designed to represent the diversity of ammonia monooxygenase (amoA) genes from Chesapeake Bay clone libraries and cultivated AOB were used to construct a glass slide microarray. Hybridization patterns among the probes in 14 samples along the transect showed clear variations in amoA community composition. Probes representing uncultivated members of the Nitrosospira-like AOB dominated the probe signal, especially in the more marine samples. Of the cultivated species, only Nitrosospira briensis was detected at appreciable levels. Discrimination analysis of hybridization signals detected two guilds. Guild 1 was dominated by the marine Nitrosospira-like probe signal, and Guild 2???s largest contribution was from upper bay (freshwater) sediment probes. Principal components analysis showed that Guild 1 was positively correlated with salinity, temperature and chlorophyll a concentration, while Guild 2 was positively correlated with concentrations of oxygen, dissolved organic carbon, and particulate nitrogen and carbon, suggesting that different amoA sequences represent organisms that occupy different ecological niches within the estuarine/marine environment. The trend from most diversity of AOB in the upper estuary towards dominance of a single type in the polyhaline region of the Bay is consistent with the declining importance of AOB with increasing salinity, and with the idea that AO-Archaea are the more important ammonia oxidizers in the ocean.

Environmental Microbiology↗

USGS2007

Rhodamine-WT dye losses in a mountain stream environment

A significant fraction of rhodamine WT dye was lost during a short term multitracer injection experiment in a mountain stream environment. The conservative anion chloride and the sorbing cation lithium were concurrently injected. In-stream rhodamine WT concentrations were as low as 45 percent of that expected, based on chloride data. Concentration data were available from shallow‘wells’dug near the stream course and from a seep of suspected return flow. Both rhodamine WT dye and lithium were nonconservative with respect to the conservative chloride, with rhodamine WT dye closely following the behavior of the sorbing lithium. Nonsorption and sorption mechanisms for rhodamine WT loss in a mountain stream were evaluated in laboratory experiments. Experiments evaluating nonsorption losses indicated minimal losses by such mechanisms. Laboratory experiments using sand and gravel size streambed sediments show an appreciable capacity for rhodamine WT sorption. The detection of tracers in the shallow wells and seep indicates interaction between the stream and the flow in the surrounding subsurface, intergravel water, system. The injected tracers had ample opportunity for intimate contact with materials shown in the laboratory experiments to be potentially sorptive. It is suggested that in the study stream system, interaction with streambed gravel was a significant mechanism for the attenuation of rhodamine WT dye (relative to chloride).

Journal of the American Water Resources Associatio↗

USGS2017

Extreme precipitation variability, forage quality and large herbivore diet selection in arid environments

Nutritional ecology forms the interface between environmental variability and large herbivore behaviour, life history characteristics, and population dynamics. Forage conditions in arid and semi-arid regions are driven by unpredictable spatial and temporal patterns in rainfall. Diet selection by herbivores should be directed towards overcoming the most pressing nutritional limitation (i.e. energy, protein [nitrogen, N], moisture) within the constraints imposed by temporal and spatial variability in forage conditions. We investigated the influence of precipitation-induced shifts in forage nutritional quality and subsequent large herbivore responses across widely varying precipitation conditions in an arid environment. Specifically, we assessed seasonal changes in diet breadth and forage selection of adult female desert bighorn sheep Ovis canadensis mexicana in relation to potential nutritional limitations in forage N, moisture and energy content (as proxied by dry matter digestibility, DMD). Succulents were consistently high in moisture but low in N and grasses were low in N and moisture until the wet period. Nitrogen and moisture content of shrubs and forbs varied among seasons and climatic periods, whereas trees had consistently high N and moderate moisture levels. Shrubs, trees and succulents composed most of the seasonal sheep diets but had little variation in DMD. Across all seasons during drought and during summer with average precipitation, forages selected by sheep were higher in N and moisture than that of available forage. Differences in DMD between sheep diets and available forage were minor. Diet breadth was lowest during drought and increased with precipitation, reflecting a reliance on few key forage species during drought. Overall, forage selection was more strongly associated with N and moisture content than energy content. Our study demonstrates that unlike north-temperate ungulates which are generally reported to be energy-limited, N and moisture may be more nutritionally limiting for desert ungulates than digestible energy.

Arizona↗

USGS2021

Riverine complexity and life history inform restoration in riparian environments in the southwestern U.S.

Riparian habitat in the southwestern USA has undergone substantial degradation over the past century, prompting extensive management and restoration of these critical ecosystems. Most restoration efforts, however, do not account for life history traits or riverine complexity that may influence genetic diversity and structure. Here, we use simple sequence repeat (SSR) markers in four southwestern riparian species ( Populus fremontii, Salix gooddingii, S. exigua, and Prosopis glandulosa ) that occupy a geographically complex region to address four questions: 1) How is river connectivity related to genetic diversity and structure? 2) How do mating systems and dispersal mechanisms influence gene flow? 3) Is genetic diversity influenced by unidirectional water flow? 4) How do unregulated tributary and regulated river flows affect clonality and associated diversity? Our results identify five findings: 1) Patterns of genetic diversity and structure vary substantially across different species; 2) species with geographic distributions that include a large, perennial river exhibit the least genetic structure; 3) mating system, clonality, and seed dispersal are related to genetic structure; 4) genetic diversity is variable among species and populations, but does not increase or decrease unidirectionally; and 5) clonality and associated diversity does not differ along a regulated river relative to unregulated tributaries. Our multispecies approach to understanding how riverine complexity and life history traits influence genetic diversity and structure could be incorporated into management efforts to more closely match riparian species with their unique environments, thereby facilitating restoration success.

Arizona↗

USGS2002

Chromium isotopes and the fate of hexavalent chromium in the environment

Measurements of chromium (Cr) stable-isotope fractionation in laboratory experiments and natural waters show that lighter isotopes reacted preferentially during Cr(VI) reduction by magnetite and sediments. The 53 Cr/ 52 Cr ratio of the product was 3.4 ± 0.1 per mil less than that of the reactant. 53 Cr/ 52 Cr shifts in water samples indicate the extent of reduction, a critical process that renders toxic Cr(VI) in the environment immobile and less toxic.

Science↗

USGS2014

Ancient aqueous environments at Endeavour crater, Mars

Opportunity has investigated in detail rocks on the rim of the Noachian age Endeavour crater, where orbital spectral reflectance signatures indicate the presence of Fe +3 -rich smectites. The signatures are associated with fine-grained, layered rocks containing spherules of diagenetic or impact origin. The layered rocks are overlain by breccias, and both units are cut by calcium sulfate veins precipitated from fluids that circulated after the Endeavour impact. Compositional data for fractures in the layered rocks suggest formation of Al-rich smectites by aqueous leaching. Evidence is thus preserved for water-rock interactions before and after the impact, with aqueous environments of slightly acidic to circum-neutral pH that would have been more favorable for prebiotic chemistry and microorganisms than those recorded by younger sulfate-rich rocks at Meridiani Planum.

Science↗

USGS1970

Minor metals of the geochemical environment, health and disease

The possibility of causal relationships between environmental factors and the occurrence of many degenerative diseases is slowly being recognized. One aspect of the environment -- that concerned with the geochemistry of the rocks, soils, plants, and water -- should be studied carefully and the distribution of minor elements be compared with geographic patterns of animal and human health and disease.

Science↗

USGS1987

Dinosaurs on the North Slope, Alaska: High latitude, latest cretaceous environments

Abundant skeletal remains demonstrate that lambeosaurine hadrosaurid, tyrannosaurid, and troodontid dinosaurs lived on the Alaskan North Slope during late Campanian—early Maestrichtian time (about 66 to 76 million years ago) in a deltaic environment dominated by herbaceous vegetation. The high ground terrestrial plant community was a mild- to cold-temperate forest composed of coniferous and broad leaf trees. The high paleolatitude (about 70° to 85° North) implies extreme seasonal variation in solar insolation, temperature, and herbivore food supply. Great distances of migration to contemporaneous evergreen floras and the presence of both juvenile and adult hadrosaurs suggest that they remained at high latitudes year-round. This challenges the hypothesis that short-term periods of darkness and temperature decrease resulting from a bolide impact caused dinosaurian extinction.

Alaska↗

USGS2016

Fluid spatial dynamics of West Nile virus in the USA: Rapid spread in a permissive host environment

The introduction of West Nile virus (WNV) into North America in 1999 is a classical example of viral emergence in a new environment, with its subsequent dispersion across the continent having a major impact on local bird populations. Despite the importance of this epizootic, the pattern, dynamics and determinants of WNV spread in its natural hosts remain uncertain. In particular, it is unclear whether the virus encountered major barriers to transmission, or spread in an unconstrained manner, and if specific viral lineages were favored over others indicative of intrinsic differences in fitness. To address these key questions in WNV evolution and ecology we sequenced the complete genomes of approximately 300 avian isolates sampled across the USA between 2001-2012. Phylogenetic analysis revealed a relatively ‘star-like' tree structure, indicative of explosive viral spread in US, although with some replacement of viral genotypes through time. These data are striking in that viral sequences exhibit relatively limited clustering according to geographic region, particularly for those viruses sampled from birds, and no strong phylogenetic association with well sampled avian species. The genome sequence data analysed here also contain relatively little evidence for adaptive evolution, particularly on structural proteins, suggesting that most viral lineages are of similar fitness, and that WNV is well adapted to the ecology of mosquito vectors and diverse avian hosts in the USA. In sum, the molecular evolution of WNV in North America depicts a largely unfettered expansion within a permissive host and geographic population with little evidence of major adaptive barriers.

Journal of Virology↗