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Comparing spatial capture–recapture modeling and nest count methods to estimate orangutan densities in the Wehea Forest, East Kalimantan, Indonesia

Accurate information on the density and abundance of animal populations is essential for understanding species' ecology and for conservation planning, but is difficult to obtain. The endangered orangutan ( Pongo spp.) is an example; due to its elusive behavior and low densities, researchers have relied on methods that convert nest counts to orangutan densities and require substantial effort for reliable results. Camera trapping and spatial capture–recapture (SCR) models could provide an alternative but have not been used for primates. We compared density estimates calculated using the two methods for orangutans in the Wehea Forest, East Kalimantan, Indonesia. Camera trapping/SCR modeling produced a density estimate of 0.16 ± 0.09–0.29 indiv/km 2 , and nest counts produced a density estimate of 1.05 ± 0.18–6.01 indiv/km 2 . The large confidence interval of the nest count estimate is probably due to high variance in nest encounter rates, indicating the need for larger sample size and the substantial effort required to produce reliable results using this method. The SCR estimate produced a very low density estimate and had a narrower but still fairly wide confidence interval. This was likely due to unmodeled heterogeneity and small sample size, specifically a low number of individual captures and recaptures. We propose methodological fixes that could address these issues and improve precision. A comparison of the overall costs and benefits of the two methods suggests that camera trapping/SCR modeling can potentially be a useful tool for assessing the densities of orangutans and other elusive primates, and warrant further investigation to determine broad applicability and methodological adjustments needed.

East Kalimantan

Integrating multiple data sources and multi-scale land-cover data to model the distribution of a declining amphibian

Determining the spatial scale at which landscape features influence population persistence is an important task for conservation planning. One challenge is that sampling biases confound factors that influence species occurrence and survey effort. Recent developments in Point Process Models (PPMs) enable researchers to disentangle the sampling process from ecological drivers of species' distributions. Land-cover change is a driver of decline for the western spadefoot (Spea hammondii), which has been extirpated from much of its range in California. Assessing this species' status requires information on the current distribution of suitable habitat within its historical range, but little is known about the effect of the landscape surrounding breeding ponds on spadefoot occurrence. Critically, surveys for western spadefoots often occur along roads, potentially biasing data used to fit species distribution models. We created PPMs integrating historical presence/non-detection and presence-only data for western spadefoots and land-cover data at multiple spatial scales to model the distribution of this species while removing the influence of sampling bias. There was spatial sampling bias in presence-only data; records were more likely to be reported near roads and urban centers and PPMs that removed sampling bias outperformed models that ignored sampling bias. The occurrence of western spadefoots was positively related to the proportion of grassland within a 2000 m buffer. The remaining habitat for western spadefoots is largely found in the foothills surrounding California's Central Valley. Our study illustrates how PPMs can improve projections of habitat suitability and our understanding of the drivers of species' distributions.

California

Tracking data highlight the importance of human-induced mortality for large migratory birds at a flyway scale

Human-induced direct mortality affects huge numbers of birds each year, threatening hundreds of species worldwide. Tracking technologies can be an important tool to investigate temporal and spatial patterns of bird mortality as well as their drivers. We compiled 1704 mortality records from tracking studies across the African-Eurasian flyway for 45 species, including raptors, storks, and cranes, covering the period from 2003 to 2021. Our results show a higher frequency of human-induced causes of mortality than natural causes across taxonomic groups, geographical areas, and age classes. Moreover, we found that the frequency of human-induced mortality remained stable over the study period. From the human-induced mortality events with a known cause ( n = 637), three main causes were identified: electrocution (40.5 %), illegal killing (21.7 %), and poisoning (16.3 %). Additionally, combined energy infrastructure-related mortality (i.e., electrocution, power line collision, and wind-farm collision) represented 49 % of all human-induced mortality events. Using a random forest model, the main predictors of human-induced mortality were found to be taxonomic group, geographic location (latitude and longitude), and human footprint index value at the location of mortality. Despite conservation efforts, human drivers of bird mortality in the African-Eurasian flyway do not appear to have declined over the last 15 years for the studied group of species. Results suggest that stronger conservation actions to address these threats across the flyway can reduce their impacts on species. In particular, projected future development of energy infrastructure is a representative example where application of planning, operation, and mitigation measures can enhance bird conservation.

Biological Conservation

Optimal control of native predators

We apply decision theory in a structured decision-making framework to evaluate how control of raccoons ( Procyon lotor ), a native predator, can promote the conservation of a declining population of American Oystercatchers ( Haematopus palliatus ) on the Outer Banks of North Carolina. Our management objective was to maintain Oystercatcher productivity above a level deemed necessary for population recovery while minimizing raccoon removal. We evaluated several scenarios including no raccoon removal, and applied an adaptive optimization algorithm to account for parameter uncertainty. We show how adaptive optimization can be used to account for uncertainties about how raccoon control may affect Oystercatcher productivity. Adaptive management can reduce this type of uncertainty and is particularly well suited for addressing controversial management issues such as native predator control. The case study also offers several insights that may be relevant to the optimal control of other native predators. First, we found that stage-specific removal policies (e.g., yearling versus adult raccoon removals) were most efficient if the reproductive values among stage classes were very different. Second, we found that the optimal control of raccoons would result in higher Oystercatcher productivity than the minimum levels recommended for this species. Third, we found that removing more raccoons initially minimized the total number of removals necessary to meet long term management objectives. Finally, if for logistical reasons managers cannot sustain a removal program by removing a minimum number of raccoons annually, managers may run the risk of creating an ecological trap for Oystercatchers.

North Carolina

Viability analysis for multiple populations

Many species of conservation interest exist solely or largely in isolated populations. Ideally, prioritization of management actions among such populations would be guided by quantitative estimates of extinction risk, but conventional methods of demographic population viability analysis (PVA) model each population separately and require temporally extensive datasets that are rarely available in practice. We introduce a general class of statistical PVA that can be applied to many populations at once, which we term multiple population viability analysis or MPVA. The approach combines models of abundance at multiple spatial locations with temporal models of population dynamics, effectively borrowing information from more data-rich populations to inform inferences for data-poor populations. Covariates are used to explain population variability in space and time. Using Bayesian analysis, we illustrate the method with a dataset of Lahontan cutthroat trout ( Oncorhynchus clarkii henshawi ) observations that previously had been analyzed with conventional PVA. We find that MPVA predictions are similar in bias and higher in precision than predictions from simple PVA models that treat each population individually; moreover, the use of covariates in MPVA allows for predictions in minimally-sampled and unsampled populations. The basic MPVA model can be extended in multiple ways, such as by linking to a sampling and observation model to provide a full accounting of uncertainty. We conclude that the approach has great potential to expand the use of PVA for species that exist in multiple, isolated populations.

Biological Conservation

Where will the cat cross the road? Comparing camera and GPS-based models for identifying wildlife corridors

Designing effective wildlife corridors is a critical conservation challenge in fragmented landscapes. GPS-based step selection functions strongly predict dispersal corridors and connectivity, but GPS collaring can be expensive and invasive. Camera-based occupancy models are widely used for connectivity analyses but may involve trade-offs in data resolution. Despite widespread use of both approaches, few studies have directly compared them using concurrent datasets. We developed a stacked single-species, single-season occupancy model and a Circuitscape connectivity surface for mountain lions (Puma concolor) on Washington’s Olympic Peninsula, USA, and compared them with a connectivity surface from an existing integrated step selection function. Both models predicted mountain lion GPS locations well, with binned Spearman rank correlations of 1 for Circuitscape and 0.96 for the step selection function, though step selection better identified habitat use by dispersers. Connectivity predictions were moderately correlated across the landscape ( r = 0.26), but agreement was strongest in human-dominated areas most critical for corridor planning. We conclude that GPS-based approaches are advantageous when data collection is feasible and the focus is on dispersal or fine-scale movement. However, camera-based approaches may be preferable for multi-species monitoring, large spatial and temporal scales, noninvasive sampling, when resources are limited, or when fine-scale or dispersal-specific inference is not required.

Washington

Long-distance translocations to create a second millerbird population and reduce extinction risk

Translocation is a conservation tool used with increasing frequency to create additional populations of threatened species. In addition to following established general guidelines for translocations, detailed planning to account for unique circumstances and intensive post-release monitoring to document outcomes and guide management are essential components of these projects. Recent translocation of the critically endangered Nihoa millerbird ( Acrocephalus familiaris kingi ) provides an example of this planning and monitoring. The Nihoa millerbird is a passerine bird endemic to Nihoa Island in the remote Northwestern Hawaiian Islands. The closely related, ecologically similar Laysan millerbird ( Acrocephalus familiaris familiaris ) went extinct on Laysan Island in the early 20th century when the island was denuded by introduced rabbits. To reduce extinction risk, we translocated 50 adult Nihoa millerbirds more than 1000 km by sea to Laysan, which has recovered substantially in the past century and has ample habitat and a rich prey-base for millerbirds. Following five years of intensive background research and planning, including development of husbandry techniques, fundraising, and regulatory compliance, translocations occurred in 2011 and 2012. Of 11 females in each cohort, 8 (2011 cohort) and 11 (2012 cohort) produced at least one brood of fledglings during their first year on Laysan. At the conclusion of monitoring in September 2014, 37 of the translocated birds were known to survive, and the population was estimated at 164 birds. The reintroduction of millerbirds to Laysan represents a milestone in the island's ongoing restoration.

Hawaii

The ecology of extinctions in kelp forest communities

We recognize three levels of extinction–global, local, and ecological – and provide examples of each. The protection and recovery of sea otters (Enhydra lutris) has provided abundant evidence of the consequences of their local extinction from kelp forest communities in the North Pacifc Ocean. These consequences include release of benthic invertebrate populations from limitation by predation; deforestation of kelp beds due to increased grazing by herbivorous sea urchins, one of the otter's main prey; and various cascading effects resulting from the biological and physical importance of kelp in coastal ecosystems. These interactions probably were important agents of selection for certain species. Two other examples are discussed: Steller's sea cow (Hydrodamalis gigas), a case of global extinction, and spiny lobsters, a possible case of ecological extinction. We speculate that grazing by sea cows was an important disturbance to surface-canopy-forming kelps and other algae in the littoral zones, but also point out that any such interactions probably acted in concert with physical disturbances by ocean waves. The ecological and evolutionary importance of sea cow grazing probably will remain a matter of speculation and conjecture because the species is globally extinct. Predation by spiny lobsters limits a variety of littoral and sublittoral invertebrate populations, particularly mollusks In one remarkable example, the reduction or local extinction of spiny lobsters enabled predutory whelks to increase in size and abundance, ultimately resulting in a predutor-prey role reversal. From these and other case studies we can clued that (1) the extinction of consumers may have brad and sometimes unexpected influences on kelp forest ecosystems; (2) direct or indirect interactions with now-extinct species probably exerted important selective influences on many extant forms; (3) such ecological and evolutionary influences are best understood where local or ecological extinctions, followed by recoveries, have provided comparisons in space or time; and (4) because of various ecological and behavioral barriers, local extinctions and their ecological consequences may not be simply reversed by protecting or reintroducing depleted or locally extinct species.

Conservation Biology

Satellite-detected forest disturbance forecasts American marten population decline: The case for supportive space-based monitoring

Limited monitoring resources often constrain rigorous monitoring practices to species or populations of conservation concern. Insufficient monitoring can induce a tautology as lack of monitoring resources makes it difficult to determine whether a species or population deserves additional monitoring resources. When in-situ monitoring resources are limited, remote habitat monitoring could be a useful supplementary tool, as linking parameterized species distribution models to spatially explicit time-series of environmental correlates allows iterative prediction of population change. Yet the performance of predictive forecasts or hindcasts has been difficult to evaluate. We paired contemporary field data, historic population estimates, and a remotely-sensed archive of landscape change to evaluate predictions of American marten ( Martes americana ) population decline owing to habitat loss in Maine, USA. We estimated contemporary spatial patterns in marten density relative to landscape disturbance with spatial capture-recapture models. We compared current density estimates to historical density calculations to evaluate population decline, and compared historical calculations to habitat-based model predictions to evaluate the efficacy of habitat monitoring as a proxy for direct monitoring. Marten density was negatively associated with the proportion of surrounding regenerating forest, and point estimates within focal townships were 50–80% lower than historical calculations. Habitat-based hindcasts of marten density across our entire focal area interest suggested a smaller population decline (roughly 50%) within our focal area. Thus, although habitat-based predictions underpredicted marten decline, they provided correct directional inference. Habitat monitoring and predictions from species distribution models may provide useful inference about population changes given trends in habitat at limited expense when in-situ information is lacking.

Maine

Identifying marine Important Bird Areas using at-sea survey data

Effective marine bird conservation requires identification of at-sea locations used by populations for foraging, staging, and migration. Using an extensive database of at-sea survey data spanning over 30 years, we developed a standardized and data-driven spatial method for identifying globally significant marine Important Bird Areas in Alaska. To delineate these areas we developed a six-step process: binning data and accounting for unequal survey effort, filtering input data for persistence of species use, using a moving window analysis to produce maps representing a gradient from low to high abundance, drawing core area boundaries around major concentrations based on abundance thresholds, validating the results, and combining overlapping boundaries into important areas for multiple species. We identified 126 bird core areas which were merged into 59 pelagic sites important to 45 out of 57 species assessed. The final areas included approximately 34–38% of all marine birds in Alaska waters, within just 6% of the total area. We identified globally significant Important Bird Areas spanning 20 degrees of latitude and 56 degrees of longitude, in two different oceans, with climates ranging from temperate to polar. Although our maps did suffer from some data gaps, these gaps did not preclude us from identifying sites that incorporated 13% of the assessed continental waterbird population and 9% of the assessed global seabird population. The application of this technique over a large and productive region worked well for a wide range of birds, exhibiting a variety of foraging strategies and occupying a variety of ecosystem types.

Alaska

Adaptive management for improving species conservation across the captive-wild spectrum

Conservation of endangered species increasingly envisages complex strategies that integrate captive and wild management actions. Management decisions in this context must be made in the face of uncertainty, often with limited capacity to collect information. Adaptive management (AM) combines management and monitoring, with the aim of updating knowledge and improving decision-making over time. We provide a guide for managers who may realize the potential of AM, but are unsure where to start. The urgent need for iterative management decisions, the existence of uncertainty, and the opportunity for learning offered by often highly-controlled captive environments create favorable conditions for AM. However, experiments and monitoring may be complicated by small sample sizes, and the ability to control the system, including stochasticity and observability, may be limited toward the wild end of the spectrum. We illustrate the key steps to implementing AM in threatened species management using four case studies, including the management of captive programs for cheetah (Acinonyx jubatus) and whooping cranes (Grus americana), of a translocation protocol for Arizona cliffroses Purshia subintegra and of ongoing supplementary feeding of reintroduced hihi (Notiomystis cincta) populations. For each case study, we explain (1) how to clarify whether the decision can be improved by learning (i.e. it is iterative and complicated by uncertainty) and what the management objectives are; (2) how to articulate uncertainty via alternative, testable hypotheses such as competing models or parameter distributions; (3) how to formally define how additional information can be collected and incorporated in future management decisions.

Biological Conservation

Accounting for multiple uncertainties in a decision-support population viability assessment

Conservation and management decisions often must be made on strict timelines, based on the “best available information” regarding a species’ current and expected future status. Simulation models are valuable tools for predicting a species’ future status but must incorporate multiple types of uncertainty in order to provide a complete understanding of plausible outcomes. Here we present a population viability analysis for a data-deficient species proposed for protection under the U.S. Endangered Species Act, the alligator snapping turtle. We used a matrix population model to simulate population trajectories, incorporating both parametric uncertainty and temporal variation into demographic parameters. We used expert elicitation to generate modified survival rates in the presence of specific anthropogenic threats, for which empirical estimates were unavailable. Because uncertainty in the expert elicited values was of particular interest to decision makers, we constructed a set of simulation scenarios to evaluate the sensitivity of model conclusions to the accuracy of expert elicited parameters. Our model predicted steep population declines under all scenarios with anthropogenic threats, indicating that under- or overestimation by experts would not change the overall conclusion that populations would decline. An additional sensitivity analysis revealed that a parameter related to nest survival for which there was high disagreement among experts had a negligible effect on model outcome, while other parameters (e.g., the effect of poaching) had more influence. Our analyses demonstrate the use of an expert-parameterized decision-support population viability analysis that explicitly evaluates the effects of multiple sources of uncertainty on model predictions.

Alabama, Arkansas, Florida, Georgia, Louisiana, Mi

Characterizing the distribution of an endangered salmonid using environmental DNA analysis

Determining species distributions accurately is crucial to developing conservation and management strategies for imperiled species, but a challenging task for small populations. We evaluated the efficacy of environmental DNA (eDNA) analysis for improving detection and thus potentially refining the known distribution of Chinook salmon ( Oncorhynchus tshawytscha ) in the Methow and Okanogan Subbasins of the Upper Columbia River, which span the border between Washington, USA and British Columbia, Canada. We developed an assay to target a 90 base pair sequence of Chinook DNA and used quantitative polymerase chain reaction (qPCR) to quantify the amount of Chinook eDNA in triplicate 1-L water samples collected at 48 stream locations in June and again in August 2012. The overall probability of detecting Chinook with our eDNA method in areas within the known distribution was 0.77 (±0.05 SE). Detection probability was lower in June (0.62, ±0.08 SE) during high flows and at the beginning of spring Chinook migration than during base flows in August (0.93, ±0.04 SE). In the Methow subbasin, mean eDNA concentration was higher in August compared to June, especially in smaller tributaries, probably resulting from the arrival of spring Chinook adults, reduced discharge, or both. Chinook eDNA concentrations did not appear to change in the Okanogan subbasin from June to August. Contrary to our expectations about downstream eDNA accumulation, Chinook eDNA did not decrease in concentration in upstream reaches (0–120 km). Further examination of factors influencing spatial distribution of eDNA in lotic systems may allow for greater inference of local population densities along stream networks or watersheds. These results demonstrate the potential effectiveness of eDNA detection methods for determining landscape-level distribution of anadromous salmonids in large river systems.

British Columbia, Washington

Survey-based assessment of the frequency and potential impacts of recreation on polar bears

Conservation plans for polar bears ( Ursus maritimus ) typically cannot prescribe management actions to address their primary threat: sea ice loss associated with climate warming. However, there may be other stressors that compound the negative effects of sea ice loss which can be mitigated. For example, Arctic tourism has increased concurrent with polar bears increasingly using terrestrial habitats, which creates the potential for increased human-bear interactions. Little is known about the types, frequency, or potential impacts of recreation. We conducted a Delphi survey among experts who live and work in polar bear habitats, followed by an internet-based survey to which 47 managers, tour operators, community members, and scientists contributed. Participants identified viewing-based recreation as increasing and affecting the largest proportion of bears within subpopulationsthat come ashore during the ice-free season. Survey respondents suggested that negative effects of viewing, including displacement and habituation, could be reduced by restricting human use areas and distances between bears and people. Killing of bears in defense was associated more with camping or hunting for other species than other recreations, and may be mitigated with deterrents. Snowmobiling was the most common recreation across the polar bears' range, and reportedly caused some den abandonment and displacement. However, respondents estimated that <10% of polar bears are exposed to most types of recreation and <50% surmised any negative impacts. Nevertheless, mitigating some of the negative impacts identified in this study may become increasingly important as polar bears cope with sea ice loss.

Biological Conservation

Design of ecoregional monitoring in conservation areas of high-latitude ecosystems under contemporary climate change

Land ownership in Alaska includes a mosaic of federally managed units. Within its agency&rsquo;s context, each unit has its own management strategy, authority, and resources of conservation concern, many of which are migratory animals. Though some units are geographically isolated, many are nevertheless linked by paths of abiotic and biotic flows, such as rivers, air masses, flyways, and terrestrial and aquatic migration routes. Furthermore, individual land units exist within the context of a larger landscape pattern of shifting conditions, requiring managers to understand at larger spatial scales the status and trends in the synchrony and spatial concurrence of species and associated suitable habitats. Results of these changes will determine the ability of Alaska lands to continue to: provide habitat for local and migratory species; absorb species whose ranges are shifting northward; and experience mitigation or exacerbation of climate change through positive and negative atmospheric feedbacks. We discuss the geographic and statutory contexts that influence development of ecological monitoring; argue for the inclusion of significant amounts of broad-scale monitoring; discuss the importance of defining clear programmatic and monitoring objectives; and draw from lessons learned from existing long-term, broad-scale monitoring programs to apply to the specific contexts relevant to high-latitude protected areas such as those in Alaska. Such areas are distinguished by their: marked seasonality; relatively large magnitudes of contemporary change in climatic parameters; and relative inaccessibility due to broad spatial extent, very low (or zero) road density, and steep and glaciated areas. For ecological monitoring to effectively support management decisions in high-latitude areas such as Alaska, a monitoring program ideally would be structured to address the actual spatial and temporal scales of relevant processes, rather than the artificial boundaries of individual land-management units. Heuristic models provide a means by which to integrate understanding of ecosystem structure, composition, and function, in the midst of numerous ecosystem drivers.

Alaska

Patch dynamics and the timing of colonization-abandonment events by male Kirtland’s Warblers in an early succession habitat

Habitat colonization and abandonment affects the distribution of a species in space and time, ultimately influencing the duration of time habitat is used and the total area of habitat occupied in any given year. Both aspects have important implications to long-term conservation planning. The importance of patch isolation and area to colonization–extinction events is well studied, but little information exists on how changing regional landscape structure and population dynamics influences the variability in the timing of patch colonization and abandonment events. We used 26 years of Kirtland’s Warbler ( Dendroica kirtlandii ) population data taken during a habitat restoration program (1979–2004) across its historical breeding range to examine the influence of patch attributes and temporal large-scale processes, specifically the rate of habitat turnover and fraction of occupied patches, on the year-to-year timing of patch colonization and abandonment since patch origin. We found the timing of patch colonization and abandonment was influenced by patch and large-scale regional factors. In this system, larger patches were typically colonized earlier (i.e., at a younger age) and abandoned later than smaller patches. Isolated patches (i.e., patches farther from another occupied patch) were generally colonized later and abandoned earlier. Patch habitat type affected colonization and abandonment; colonization occurred at similar patch ages between plantation and wildfire areas (9 and 8.5 years, respectively), but plantations were abandoned at earlier ages (13.9 years) than wildfire areas (16.4 years) resulting in shorter use. As the fraction of occupied patches increased, patches were colonized and abandoned at earlier ages. Patches were abandoned at older ages when the influx of new habitat patches was at low and high rates. Our results provide empirical support for the temporal influence of patch dynamics (i.e., patch destruction, creation, and succession) on local colonization and extinction processes that help explain large-scale patterns of habitat occupancy. Results highlight the need for practitioners to consider the timing of habitat restoration as well as total amount and spatial arrangement of habitat to sustain populations.

Biological Conservation

Potential economic consequences along migratory flyways from reductions in breeding habitat of migratory waterbirds

The migration of species, often across continents, makes it difficult to quantify the cumulative effects of local- and regional-scale conservation actions. Further, variation in stakeholder interests, differing jurisdictional governance processes, priorities, and monitoring abilities across the migratory range shapes place-specific differences in management actions. These differences may lead management of migratory species to benefit both species and stakeholders in some places more than others. In the case of North American waterfowl, possible reduction of wetland protection in breeding areas may lead to substantive shifts in benefits among stakeholders across their range by adversely affecting recreational viewing and hunting opportunities for these species. To understand possible consequences of wetland loss in the U.S. Prairie Pothole Region, the breeding region for 12 focal species of waterfowl, on the recreation economics for these species, we modeled a causal pathway linking wetland loss in the breeding grounds to changes in duck abundance and then assessed the consequences of that change in abundance on recreational hunting and viewing within migratory flyways. Under a scenario where wetland protections cease, we find annual economic activity associated with recreation may decrease as much as \$489 million at the highest levels of predicted wetland loss, the majority of it coming from impacts to viewing behavior in the Mississippi Flyway. The number of hunters may decline by as much as 18,000, leading to \$32 million less in annual economic activity. At highest levels of wetland loss, viewing value is expected to decline by more than one-quarter. Lost economic value associated with reductions in recreation in the Mississippi and Central Flyway states is not likely to be overcome by increases in agricultural economic output in drained wetlands of the Prairie Pothole Region. Our analyses indicate local effects of national water policies likely have far-reaching consequences because of the multi-dimensional connections arising from place-specific differences in management action, global and national agricultural economic drivers of crop expansion, and the biotic phenomena of transcontinental avian migration. Reductions in habitat in one location could ramify to economic consequences throughout the continent through connections fostered by migrating waterfowl.

Biological Conservation

Climate change is creating a mismatch between protected areas and suitable habitats for frogs and birds in Puerto Rico

Climate change is altering the spatial distribution of many species around the world. In response, we need to identify and protect suitable areas for a large proportion of the fauna so that they persist through time. This exercise must also evaluate the ability of existing protected areas to provide safe havens for species in the context of climate change. Here, we combined passive acoustic monitoring, semi-automatic species identification models, and species distribution models of 21 bird and frog species based on past (1980–1989), present (2005–2014), and future (2040–2060) climate scenarios to determine how species distributions relate to the current distribution of protected areas in Puerto Rico. Species detection/non-detection data were acquired across ~ 700 sampling sites. We developed always-suitable maps that characterized suitable habitats in all three time periods for each species and overlaid these maps to identify regions with high species co-occurrence. These distributions were then compared with the distribution of existing protected areas. We show that Puerto Rico is projected to become dryer by 2040–2060, and precipitation in the warmest quarter was among the most important variables affecting bird and frog distributions. A large portion of always-suitable areas (ASA) is outside of protected areas (> 80%), and the percent of protected areas that overlaps with always-suitable areas is larger for bird (75%) than frog (39%) species. Our results indicate that present protected areas will not suffice to safeguard bird and frog species under climate change; however, the establishment of larger protected areas, buffer zones, and connectivity between protected areas may allow species to find suitable niches to withstand environmental changes.

Puerto Rico