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At least 307 records · Page 17Linked to original sources
USGS2024

Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds

Accurately predicting species’ distributions is critical for the management and conservation of fish and wildlife populations. Joint Species Distribution Models (JSDMs) account for dependencies between species often ignored by traditional species distribution models. We evaluated how a JSDM approach could improve predictive strength for stream fish communities within large watersheds (the Chesapeake Bay Watershed, USA), using a cross-validation study of JSDMs fit to data from over 50 species. Our results suggest that conditional predictions from JSDMs have the potential to make large improvements in predictive accuracy for many species, particularly for more generalist species where single species models may not perform well. For some species there was no added explanatory effect from conditional information, most of which already exhibited strong marginal predictive ability. For several rare species there were significant improvements in occurrence predictions, while the results for two invasive species considered did not show the same improvements. Overall, the optimal number of species to condition upon, as well as the effects of conditioning upon an increasing number of species, varied widely among species.

Chesapeake Bay watershed↗
USGS2024

Paired comparisons with quiet surface drones show evidence of fish behavioral response to motorized vessels during acoustic surveys in Lake Superior

Acoustic surveys are important for fish stock assessments, but fish responses to survey vessels can bias acoustic estimates. We leveraged quiet uncrewed surface vessels (USVs) to characterize potential bias in acoustic surveys. Five conventional motorized ships overtook USVs from astern over 2 km transects at night in Lake Superior in 2022. We examined the difference in acoustic backscatter, average target depth, and average target strength (TS) between USV and motorized vessels. Although sound level measurements from the motorized vessels sometimes exceeded recommendations for scientific vessels, we did not detect differences in acoustic measures among survey vessels. However, the USVs recorded 2 dB higher acoustic backscatter and TS than motorized vessels, leading to ~15% higher fish densities with drones when using in situ TS and echo integration. Differences in fish density would increase to 30-60% if a standard TS value was applied. Target depth did not differ between USVs and motorized ships. These results are consistent with a change in orientation but not depth of insonified fish and limited horizontal avoidance of motorized survey vessels.

Lake Superior↗
USGS2024

Evolutionary perspectives on thiamine supplementation of managed Pacific salmonid populations

Thiamine deficiency complex (TDC) has been identified in an ever-expanding list of species and populations. In many documented occurrences of TDC in fishes, juvenile mortality can be high—up to 90% at the population level. Such sweeping demographic losses and concomitant decreases in genetic diversity due to TDC can be prevented by treating pre-spawn females or fertilized eggs with supplemental thiamine. However, some fisheries managers are hesitant to widely apply thiamine treatments due to the potential for unforeseen evolutionary consequences. With these concerns in mind, we first review the existing data regarding genetic adaptation to low-thiamine conditions and provide perspectives on evolution-informed treatment strategies with specific population examples. We also provide practical treatment information, consider the potential logistical constraints of thiamine supplementation, and explore the consequences of deciding against supplementation. Until new evidence bolsters or refutes the genetic adaptation hypothesis, we suggest that TDC mitigation strategies should be designed to support maximum population genetic diversity through thiamine supplementation.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2025

Climate and connectivity mediate overwintering habitat suitability for centrarchids in a large floodplain river network

Availability of suitable overwintering habitat is crucial for the survival of centrarchids in large floodplain rivers. However, there remains uncertainty in the spatiotemporal drivers of suitable conditions. We paired hydrogeomorphic characteristics with environmental data from 1994 to 2018 in individual lentic areas to (1) assess overwintering habitat availability throughout the Upper Mississippi River System using existing habitat suitability indices (HSIs) and (2) explore potential drivers of overall habitat suitability (HSI O ) and its components (dissolved oxygen, temperature, and flow). We found that flow velocities that exceeded suitable thresholds were independently responsible for 53% of nonsuitable habitats, and connectivity with lotic channels and river discharge increased velocity within lentic habitats. Additionally, colder winter conditions reduced water temperature, reducing availability of highly suitable habitat. Our results indicate that although warmer winters could increase the availability of highly suitable habitat for centrarchids, changes in flow regimes could lead to more connected areas becoming unsuitable. Our results provide critical information on factors that can be prioritized to manage centrarchid habitat, which is especially important in the context of uncertain future climate.

upper Mississippi River↗
USGS2025

Estimating drivers and identifying uncertainties in smallmouth bass population dynamics in an invaded river network

Smallmouth bass ( Micropterus dolomieu ) is an important recreational sportfish and destructive non-native species when introduced into freshwater habitats. There is therefore a need to understand the drivers of, and uncertainties in, smallmouth bass population dynamics for various management objectives. We combined long-term smallmouth bass catch-effort and early life history data from a non-native population in the Green River sub-basin of the upper Colorado River to develop a demographic model that links interannual variability in environmental conditions to recruitment in three river reaches. We used the model to quantify how hydrology, river temperature, and exploitation drive smallmouth bass population dynamics. Early life stages were influenced by timing of hatching and discharge. Dispersal of age-0 fish and density-dependent dynamics were identified as primary sources of uncertainty. Determining the true nature of density-dependent dynamics is important, as the impact of exploitation-based management actions is dependent on the strengths of any density-dependent feedbacks. Our model provides a framework to predict smallmouth bass population responses to future climate conditions, reservoir operations, and exploitation levels.

Utah↗
USGS2025

Declining reservoir elevations following a two-decade drought increase water temperatures and non-native fish passage facilitating a downstream invasion

River ecosystems are threatened by interactions among river regulation, non-native species, and climate change. Water use has exceeded supply in USA’s Colorado River basin draining its two largest storage reservoirs (Lake Powell and Lake Mead). In 2022, Lake Powell began releasing water from its lower epilimnion into the Grand Canyon segment of the Colorado River, which (1) increased rates of fish passage from the reservoir through the dam and (2) created river temperatures suitable for establishment of non-native fishes. Subsequently, smallmouth bass ( Micropterus dolomieu) reproduced there for the first time. To assist managers concerned about this invasion, we developed models that (1) predicted propagule pressure at different reservoir elevations and (2) linked reservoir storage/operations, water temperatures, and population dynamics to forecast smallmouth bass population growth potential. Maintaining Lake Powell elevations above 1094 m (3590 ft) would likely minimize propagule pressure from the reservoir and create downstream conditions that minimize smallmouth bass population growth. Dam and reservoir management will likely be less effective for managing smallmouth bass if smallmouth bass become abundant in far downstream reaches.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2025

Native Yellowstone cutthroat trout Oncorhynchus virginalis bouvieri growth and survival in a headwater stream primarily driven by warming stream temperatures, with non-native brown trout Salmo trutta posing an additional threat to survival

Warming rivers and interactions with non-native species impact salmonid species globally. Understanding how hydroclimatic conditions synergistically and independently interact with non-native species is critical for effectively managing salmonids into the future. We used a 10-year mark–recapture dataset to assess how native Yellowstone cutthroat trout (YCT) Oncorhynchus virginalis bouvieri and non-native brown trout Salmo trutta growth rates and apparent survival were affected by hydroclimatic conditions and (for YCT) the presence of brown trout in a tributary. Growth (YCT) and survival (both species across size classes) were negatively related to warming stream temperatures. Brown trout growth was positively related to increasing daily streamflow variability (a proxy for streamflow), but this variable was not included in the top YCT growth model. Density-dependent effects appeared to be non-existent (growth) or weakly positive (survival). When sympatric with brown trout, YCT displayed worse survival than allopatric YCT across environmental conditions. Broadly, we found native and non-native trout respond to different hydroclimatic conditions that shift with changing climatic conditions, and brown trout represent an additional threat to YCT survival.

Montana↗
USGS2025

Reproductive contribution of lake sturgeon transferred upstream of dams on a Great Lakes tributary

Dam construction contributes to declines in the distribution and abundance of many fishes. Increasing connectivity through adult transfer can be demographically and genetically beneficial, but assessing the effects resulting from transfer can be difficult if resident fish exist upstream. Genotypes of adult and larval lake sturgeon ( Acipenser fulvescens ) were used to quantify contributions to larval recruitment from adults transferred upstream of dams on the Menominee River, USA. We evaluated whether transfer timing, sex, and adult size were associated with the odds of reproduction. Elevator transfer operations in Fall 2019, Fall 2020, and Spring 2021 resulted in 152 male and 81 female lake sturgeon transferred upstream. In 2020 and 2021, 580 and 518 larvae were genotyped. We found that 86% (201/233) of adults reproduced and 62.3% (684/1098) of offspring had transferred parents. In total, we estimated that 392 resident adults contributed to offspring production. Mixed matings accounted for 53% of offspring genotyped, increasing levels of offspring genetic diversity relative to offspring produced from resident-only matings. Transferring adults may be a viable restoration alternative for other iteroparous fish in river systems where connectivity to spawning areas has been impeded.

Michigan, Wisconsin↗
USGS2025

Using complementary biomarkers to unravel fish lifetime exposure to hypoxia and mercury

Aquatic ecosystems are losing oxygen due to climate change. This deoxygenation can favor microbial methylation of mercury (Hg). To understand the dynamics of Hg under increasing deoxygenation, we simultaneously quantified both Hg and hypoxia (< 2 mg O2/L) lifetime chronologies in fishes. We used a novel combination of chemical biomarkers in ear stones and eye lenses. We compared these markers in two species with different life histories, benthic Round Goby (Neogobius melanostomus) and semi-demersal Yellow Perch (Perca flavescens), from two connected ecosystems with different levels of hypoxia: the Central Basin of Lake Erie and the less hypoxic but more polluted Western Basin. Overall, Central Basin Round Goby were exposed to hypoxia throughout their lifetime and exhibited significantly elevated eye lens Hg concentrations ([Hg]) compared to their Western Basin counterparts. In contrast, the Central Basin Yellow Perch were exposed to hypoxia only at their juvenile stage. Central Basin Yellow Perch exhibited significantly lower eye lens [Hg] compared to their Western Basin counterparts. Patterns revealed by eye lens [Hg] were not detectable in muscle tissue [Hg]. Findings show that exposure to hypoxia can alter fish lifetime Hg accumulation patterns, with species-specific outcomes.

central and western basins of Lake Erie↗
USGS2025

Influence of local river hydraulics on Kootenai River white sturgeon (Acipenser transmontanus) habitat selection during four spawning years, 2017–2020

Understanding fine-scale habitat selection of endangered Kootenai River white sturgeon ( Acipenser transmontanus ) is an important component for monitoring and recovery efforts. Fine-scale habitat selection and quantifying temporal changes in suitable habitat contributes to the work of addressing recruitment failure within the Kootenai River population. Habitat suitability indices were developed using over 96 000 acoustic telemetry sturgeon detections and two-dimensional hydrodynamic model simulations near Bonners Ferry, Idaho, USA. The selected habitat was assessed to develop habitat suitability indices for sturgeon; females undergoing spawn migrations and non-spawners. The most frequented locations were 8–9 m deep and water velocities of 0.3–0.7 m·s −1 . These observations suggest sturgeon with different spawning capabilities selected similar habitat. Weighted usable area was calculated to understand temporal variability in habitat quality, which showed a positive relationship with increases in flow. Results help understand the habitat limiting factors in regulated hydrologic regimes; provide biologists insight for monitoring efforts in discrete habitat conditions; guidance for water managers and the regulation of upstream water resources; and guidance to restoration practitioners for in-stream structure designs.

Idaho↗
USGS2025

Mixed natal origins present management challenges for a non-native fish established throughout a modified river network

Expansion of non-native brown trout ( Salmo trutta ) in the Colorado River below Glen Canyon Dam motivated reevaluation of suppression strategies to minimize potential impacts to native fishes in the Grand Canyon, Arizona, USA. Brown trout are one of several non-native fish species of management concern in this river reach, and understanding their natal sources and movement patterns may assist managers in planning suppression strategies. We identified trace elements in brown trout otoliths, which, when coupled with location-specific water chemistry data, identified brown trout natal origins over 19 years. Strontium and manganese concentrations revealed distinct emigration patterns from natal tributary streams and the mainstem Colorado River over two periods. Adult brown trout collected from throughout our study area showed mixed tributary and mainstem natal origins, which persisted during suppression efforts in a known spawning tributary. Unexpectedly, we found evidence of brown trout reproduction in the Colorado River for at least a decade before documentation through field monitoring. Our findings may inform but complicate the development of management strategies for system-wide brown trout suppression.

Arizona↗
USGS2025

Estimating predation of adult sockeye salmon by American white pelicans in the Columbia River using a state-space Bayesian approach

Adult sockeye salmon ( Oncorhynchus nerka ) migrate past the largest breeding colony of American white pelicans ( Pelecanus erythrorhynchos) in the Columbia River, USA. To investigate the magnitude of pelican predation on sockeye salmon, a state-space Bayesian model was used to estimate spatially and temporally explicit predation and survival probabilities, and to estimate the total number of salmon consumed by pelicans each year. Results show that pelican predation was a substantial source of salmon mortality in some years, with median predation probabilities ranging annually from 0.015 to 0.084, resulting in an estimate of 1328 to 47 265 fish consumed annually from 2014 to 2023. While there was evidence that predation probabilities were associated with the number of sockeye salmon returning to the Columbia River annually, there was no evidence that fish length was associated with susceptibility to predation. Additional research aimed at investigating how other biotic and abiotic factors influence sockeye salmon susceptibility to pelican predation are needed to broaden our understanding of predator–prey interactions and to determine to what degree predation limits sockeye salmon survival prior to spawning.

Washington↗
USGS2025

Integrating acoustic telemetry research into management: successes and challenges in the Laurentian Great Lakes

In the Laurentian Great Lakes, the application of acoustic telemetry to track fish movements has evolved into an important part of multijurisdictional management. Nevertheless, barriers remain in translating telemetry research into management or conservation actions. Here, we synthesize acoustic telemetry literature within the Great Lakes basin to explore factors that have contributed to successes and failures of integrating research with the needs of decision-making processes. Collaboration between researchers and managers, facilitated by consistent opportunities for stakeholder engagement, stood out as one of the most effective means of integration. For example, 79% (95 of 127) of articles published (up to 2023) included co-authorship by both government and academic organizations. Case studies on lake sturgeon ( Acipenser fulvescens ), walleye ( Sander vitreus ), and sea lamprey ( Petromyzon marinus ) further highlight how telemetry has informed management through collaborative engagement among researchers, stakeholders, and managers, as well as ongoing challenges. By exploring facets of acoustic telemetry research and connections to conservation and fisheries concerns, we identify pathways to reduce knowledge–action gaps widely applicable within and outside of the Great Lakes.

Laurentian Great Lakes↗
USGS2025

Negative growth in body mass of trout and salmon in a small stream network

In species inhabiting stressful environments, some individuals experience negative growth in body mass during their lives, potentially influencing survival, reproduction, populations, and ecosystems. Using data from a long-term (1997–2015) study of brook trout ( Salvelinus fontinalis ), brown trout ( Salmo trutta ), and juvenile Atlantic salmon ( Salmo salar ) in Massachusetts, USA, we analyzed the frequency, causes, and consequences of seasonal mass loss. Negative growth occurred in 14.8% of observations (3573 instances), with the highest prevalence during summer (June–September). Species differed markedly: 42.5% of juvenile Atlantic salmon, 24.9% of brook trout, but only 7.7% of brown trout exhibited negative growth. The likelihood of mass loss increased with size, age, and low stream flows, particularly in summer. Brook trout in the small or isolated tributaries exhibited less summer mass loss than those in the larger streams. Other factors, including temperature and population density, had minimal or inconsistent effects. Individuals experiencing negative growth, especially brook trout in summer and autumn, were less likely to be re-encountered. As we observed no association of mass loss with movement, this suggests a potential survival cost of negative body mass growth.

Massachusetts↗
USGS2025

Combining acoustic telemetry and side-scan sonar to estimate abundance of endangered shortnose sturgeon in the Hudson River, New York

For endangered shortnose sturgeon (Acipenser brevirostrum), the ability to estimate and monitor population size is critical for tracking species’ recovery. Yet, contemporary abundance estimates have not been completed for many shortnose sturgeon populations, largely owing to the difficulty in using traditional abundance estimators for sturgeons. Here, we estimate the adult shortnose sturgeon population size of the Hudson River, NY by integrating data from two largely passive sampling methods – acoustic telemetry and side-scan sonar – into a Bayesian hierarchical model of abundance. We estimated the adult abundance to be 69,798 individuals (95% CI = 9,207-185,666), making the Hudson River the largest extant shortnose sturgeon population. Despite this, the population remains vulnerable to localized disturbances, as over 40% of the population congregated in a small overwintering habitat that coincides with an area of high anthropogenic activity. Accordingly, recurrent demographic surveys may be beneficial for gaining insight into the relative effects of anthropogenic and naturally stochastic processes shaping shortnose sturgeon demography. Our modeling framework provides a relatively low-cost alternative for future demographic monitoring of species of conservation concern.

New York↗
USGS2026

Decreased water transparency of nearshore Laurentian Great Lakes habitats is driven by increased dissolved organic carbon.

Little is understood of lake browning (due to increased dissolved organic carbon; DOC) in large lakes such as the Laurentian Great Lakes. Lake browning can alter whole lake ecosystems, including decreasing exposure to damaging ultraviolet radiation (UV-B) which is strongly and selectively attenuated by DOC more so than photosynthetically active radiation (PAR). We compared the changes in UV-B and PAR transparency to DOC data collected during the ice-free seasons from 62 nearshore sites in four of the five Great Lakes from 2002 to 2022 using linear mixed effects regression models based on backwards selected Bayesian information criteria. Regionally, DOC significantly increased from 2002 to 2022 by 0.5% per year on average. DOC strongly and inversely explained the variability of UV-B and PAR transparencies, as did seasons and offshore influence on these habitats. We provide regional evidence of lake browning within the nearshore habitats of the Great Lakes as a strong contrast to the well-documented increased offshore water transparency associated with the spread of invasive dreissenid mussels.

Great Lakes↗
USGS2025

Smallmouth bass (Micropterus dolomieu) and chain pickerel (Esox niger) identified as Atlantic salmon (Salmo salar) smolt predators in a reservoir system

Reservoir predation has been identified as a leading mortality source for smolts migrating through impounded river systems. We investigated smolt predation risk for an endangered Atlantic salmon ( Salmo salar ) population in the Weldon Dam reservoir in the Penobscot River, Maine, USA. In spring 2022, we characterized the fates of 390 tethered smolts. Smolts were exclusively predated by two predator species not native to the study area: chain pickerel ( Esox niger , n = 43) and smallmouth bass ( Micropterus dolomieu , n = 42). Using Cox-proportional hazard analysis, we estimated that 23% (95% CI = 15%–29%) of tethered smolts were expected to be predated within a one-hour deployment. Water temperature was the primary driver of predation risk as predation probability increased from 10% to 33% when temperature increased from 5 to 15 °C. Smolts also incurred above-average predation risk when they were within 40 m of shore. We demonstrate that non-native fish predation may drive patterns of high impoundment mortality and that risk is spatially and temporally heterogeneous within these systems. Collectively, this study offers direct evidence of species-specific predation on Atlantic salmon smolts and illuminates potential strategies to mitigate predation risk during reservoir migration.

Maine↗
USGS2025

Elevation mediates juvenile steelhead demographic response to stream temperature and flow

Climate change alters streams by modifying flow dynamics, temperature, and biotic communities, changing the habitat where stream dwelling fish have evolved. We used snorkel survey data spanning four decades to investigate how juvenile steelhead (anadromous Oncorhynchus mykiss ) counts and size structure were influenced by stream temperature and flow. Warmer temperatures were associated with lower abundance and larger fish at low elevations and with higher abundance and smaller fish at higher elevations. Low flows were related to increased abundance and smaller fish at low elevations but to decreased abundance at high elevations, suggesting that lower elevation streams, which tend to be larger, provided additional habitat during low flows. High flows were negatively related to abundance and positively related to average size, suggesting emigration of fish in younger age-classes. Overall, steelhead exhibited greater resilience to warm temperatures at high elevations and, conversely, greater resilience to low and high flows at lower elevations. Understanding how streamflow and temperature affect juvenile steelhead abundance and size structure provides insight into how climate change can affect juvenile steelhead production.

Idaho↗