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At least 289 records · Page 16Linked to original sources

Virus diseases of the salmonidae in the western United States. I. Etiology and epizootiology

The history of fish diseases in western United States shows an increasing awareness that viruses could cause epizootics in fish. Fishery biologists bunked first, for protozoan and metazoan parasites, then for bacteria, and if none could be identified assumed that the mortalities were attributable to nutritional deficiency, Microbiologists in general were cognizant of virus diseases in other animals and investigators of fish diseases were alert to the possibility that piscine epizootics could be of similar cause. In 1950 an epizootic occurred in sockeye salmon (Gncorhynchus norkm) that was shown to have a viral etiologic agent. In recent years, with increasing frequency, we have been able to demonstrate a virus utiology for epizootics and panzootics in trout and salmon in several states in the West. FIGURE 1 is a map showing the location of epizootics of infectious pancreatic necrosis (IPN), Sacramento River chinook disease (SRCD), Oregon sockeye disease (OSD), and Columbia River sockeye disease (CRSDJ. The pathology and immunopathology of these are discussed in detail in other reports. The present report was initiated as a review of the literature concerning the diseases and to present in brief a description of their etiologic agents.

Annals of the New York Academy of Sciences

Carnivore hotspots in Peninsular Malaysia and their landscape attributes

Mammalian carnivores play a vital role in ecosystem functioning. However, they are prone to extinction because of low population densities and growth rates, and high levels of persecution or exploitation. In tropical biodiversity hotspots such as Peninsular Malaysia, rapid conversion of natural habitats threatens the persistence of this vulnerable group of animals. Here, we carried out the first comprehensive literature review on 31 carnivore species reported to occur in Peninsular Malaysia and updated their probable distribution. We georeferenced 375 observations of 28 species of carnivore from 89 unique geographic locations using records spanning 1948 to 2014. Using the Getis-Ord Gi*statistic and weighted survey records by IUCN Red List status, we identified hotspots of species that were of conservation concern and built regression models to identify environmental and anthropogenic landscape factors associated with Getis-Ord Gi* z scores. Our analyses identified two carnivore hotspots that were spatially concordant with two of the peninsula’s largest and most contiguous forest complexes, associated with Taman Negara National Park and Royal Belum State Park. A cold spot overlapped with the southwestern region of the Peninsula, reflecting the disappearance of carnivores with higher conservation rankings from increasingly fragmented natural habitats. Getis-Ord Gi* z scores were negatively associated with elevation, and positively associated with the proportion of natural land cover and distance from the capital city. Malaysia contains some of the world’s most diverse carnivore assemblages, but recent rates of forest loss are some of the highest in the world. Reducing poaching and maintaining large, contiguous tracts of lowland forests will be crucial, not only for the persistence of threatened carnivores, but for many mammalian species in general.

PLoS ONE

Piscicides and invertebrates: after 70 years, does anyone really know?

The piscicides rotenone and antimycin have been used for more than 70 years to manage fish populations by eliminating undesirable fish species. The effects of piscicides on aquatic invertebrate assemblages are considered negligible by some and significant by others. This difference of opinion has created contentious situations and delayed native fish restoration projects. We review the scientific evidence and report that short-term (< 3 months) impacts of piscicides to invertebrate assemblages varied from minor to substantial and long-term (> 1 year) impacts are largely unknown. Recovery of invertebrate assemblages following treatments ranged from a few months for abundances of common taxa to several years for rarer taxa. Variation in reported effects was primarily due to natural variation among species and habitats and a lack of adequate pre- and post-treatment sampling which prevents determining the true impacts to invertebrate assemblages. The factors most likely to influence impacts and recovery of aquatic invertebrate assemblages following piscicide treatments are: (1) concentration, duration, and breadth of the piscicide treatment; (2) invertebrate morphology and life history characteristics, including surface area to volume ratios, type of respiration organs, generation time, and propensity to disperse; (3) refugia presence; and (4) distance from colonization sources.

Fisheries

A hermaphroditic coregonine from Lake Michigan

Hermaphroditism is relatively rare among the Salmonidae (See Atz, 1964 for a comprehensive review) and has never been reported for coregonine fishes. Recent examination of a collection of coregonines at the Great Lakes Fishery Laboratory disclosed a hermaphroditic bloater( Coregonus hoyi ). The fish was captured in a gill net set at 50 fathoms on the bottom of Lake Michigan approximately 7.5 miles NNW of Frankfort, Michigan, on November 2, 1955. The fish had a normal rate of growth and was 234 mm long and in its 5th year of life; it was normal in external appearance but was easily identified as a hermaphrodite by gross examination of its gonads

Transactions of the American Fisheries Society

Haemoproteus, a blood parasite, in domestic pigeons and mourning doves in Maryland

The occurrence of Haemoproteus in pigeons throughout the world and in mourning doves in the United States is reviewed. Haemoproteus has previously been reported only once from pigeons in Maryland. During this study it was found in all of 18 pigeons from one area but in none of 12 from an adjacent area. No infections were found in 90 Maryland mourning doves. All of the 10 mourning doves from Florida were infected whereas 60 nestlings from Texas and Mississippi had no parasites. None was found in 358 nestling white-winged doves from Texas.

Chesapeake Science

Assessment of a habitat equivalency analysis for freshwater mussels in the upper Mississippi River

The upper Mississippi River (UMR) contains diverse, dense, and reproducing assemblages of native freshwater mussels. In the case of an injury to mussels and their habitats, such as a hazardous material spill, train derailment, or barge grounding, resource managers have few restoration strategies. Resource managers need a means to document, quantify, and mitigate adverse effects on mussels resulting from injury. Habitat equivalency analysis (HEA), developed for use with a wide variety of habitat types, is a restoration scaling technique that compares ecological services lost from injury to ecological services gained through restoration actions. The U.S. Fish and Wildlife Service and Iowa Department of Natural Resources modified the HEA for use with native mussels. The mussel HEA has been applied within the UMR to estimate the quantity of restoration needed to compensate the public for injuries to mussels due to contaminant spills and construction projects. Our objective was to describe the UMR HEA for a general audience and assess if the four biological input variables used in the mussel HEA were reasonable based on literature values. We also evaluated the performance of HEA under a range of input scenarios. Although the input estimates used in HEA were within ranges reported in the peer-reviewed literature or were supported by professional judgment in the absence of peer-reviewed literature, outcomes of the mussel HEA were highly variable and would benefit from additional research to reduce uncertainty in the biological inputs. The application of HEA to mussels provides resource managers with a tool to quantify mussel-related ecological services lost from injury and to guide restoration efforts in the UMR.

Freshwater Mollusk Biology and Conservation

Conservation of northwestern and southwestern pond turtles: Threats, population size estimates, and population viability analysis

Accurate status assessments of long-lived, widely distributed taxa depend on the availability of long-term monitoring data from multiple populations. However, monitoring populations across large temporal and spatial scales is often beyond the scope of any one researcher or research group. Consequently, wildlife managers may be tasked with utilizing limited information from different sources to detect range-wide evidence of population declines and their causes. When assessments need to be made under such constraints, the research and management communities must determine how to extrapolate from variable population data to species-level inferences. Here, using three different approaches, we integrate and analyze data from the peer-reviewed literature and government agency reports to inform conservation for northwestern pond turtles (NPT) Actinemys marmorata and southwestern pond turtles (SPT) Actinemys pallida . Both NPT and SPT are long-lived freshwater turtles distributed along the west coast of the United States and Mexico. Conservation concerns exist for both species; however, SPT may face more severe threats and are thought to exist at lower densities throughout their range than NPT. For each species, we ranked the impacts of 13 potential threats, estimated population sizes, and modeled population viability with and without long-term droughts. Our results suggest that predation of hatchlings by invasive predators, such as American bullfrogs Lithobates catesbeianus and Largemouth Bass Micropterus salmoides, is a high-ranking threat for NPT and SPT. Southwestern pond turtles may also face more severe impacts associated with natural disasters (droughts, wildfires, and floods) than do NPT. Population size estimates from trapping surveys indicate that SPT have smaller population sizes on average than do NPT ( P = 0.0003), suggesting they may be at greater risk of local extirpation. Population viability analysis models revealed that long-term droughts are a key environmental parameter; as the frequency of severe droughts increases with climate change, the likelihood of population recovery decreases, especially when census sizes are low. Given current population trends and vulnerability to natural disasters throughout their range, we suggest that conservation and recovery actions first focus on SPT to prevent further population declines.

Journal of Fish and Wildlife Management

Potential ungulate prey for Gray Wolves

Data were gathered for six ungulate species that reside in or near Yellowstone National Park. If gray wolves ( Canis lupus ) are reintroduced into the Yellowstone area, their avoidance of human activities or their management by human may determine their range. Therefore, the area of wolf occupation cannot be predicted now. We restricted our analysis to Yellowstone National Park and to the adjacent national forest wilderness areas. We included mostly ungulate herds that summer inside or adjacent to the park and that would probably be affected by wolves. Our wolf study area includes Yellowstone National Park and adjacent wilderness areas most likely to be occupied by wolves. We reviewed publications, park records, survey reports, and state fish and game surveys and reports for statistics on ungulate populations. These data [provide an overview of ungulate populations and harvests. Each ungulate herd is described in detail. We restricted our analysis to 1980-89, because population surveys were more complete during that period and because population estimates of most ungulate populations had increased by the 1980's. We feel the higher estimates of the 1980's reflect more up-to-date techniques and are most representative of the situation into which the wolves would be reintroduced.

Idaho, Montana, Wyoming

Preliminary analyses of volcanic hazards at Kīlauea Volcano, Hawai‘i, 2017–2018

From 2017 to 2018, the U.S. Geological Survey (USGS) Hawaiian Volcano Observatory (HVO) responded to ongoing and changing eruptions at Kīlauea Volcano as part of its mission to monitor volcanic processes, issue warnings of dangerous activity, and assess volcanic hazards. To formalize short-term hazards assessments—and, in some cases, issue prognoses for future activity—and make results discoverable to both the public and the authorities, HVO released reports online. These reports were published rapidly, received peer review under the USGS’s Fundamental Science Practice guidelines, and were intended to address a focused question posed by one or more cooperating agencies—for this reason, they were called “cooperator reports.” This Open-File Report concatenates four such products issued in 2017 and 2018 into a single publication. These reports have been reformatted and lightly edited for clarity, but the content has not otherwise been changed from the versions first publicly released.

Hawaii

A summary report of sediment processes in Chesapeake Bay and watershed

The Chesapeake Bay, the Nation's largest estuary, has been degraded because of diminished water quality, loss of habitat, and over-harvesting of living resources. Consequently, the bay was listed as an impaired water body due to excess nutrients and sediment. The Chesapeake Bay Program (CBP), a multi-jurisdictional partnership, completed an agreement called "Chesapeake 2000" that revises and establishes new restoration goals through 2010 in the bay and its watershed. The goal of this commitment is the removal of the bay from the list of impaired waterbodies by the year 2010. The CBP is committed to developing sediment and nutrient allocations for major basins within the bay watershed and to the process of examining new and innovative management plans in the estuary itself and along the coastal zones of the bay. However, additional information is required on the sources, transport, and deposition of sediment that affect water clarity. Because the information and data on sediment processes in the bay were not readily accessible to the CBP or to state, and local managers, a Sediment Workgroup (SWGP) was created in 2001. The primary objective of this report, therefore, is to provide a review of the literature on the sources, transport, and delivery of sediment in Chesapeake Bay and its watershed with discussion of potential implications for various management alternatives. The authors of the report have extracted, discussed, and summarized the important aspects of sediment and sedimentation that are most relevant to the CBP and other sediment related-issues with which resources managers are involved. This report summarizes the most relevant studies concerning sediment sources, transport and deposition in the watershed and estuary, sediments and relation to water clarity, and provides an extensive list of references for those wanting more information.

Water-Resources Investigations Report

U.S. Geological Survey Great Lakes Science Forum—Summary of remaining data and science needs and next steps

A U.S. Geological Survey-led assessment of data gaps and science needs across the Great Lakes ecosystem indicated the following: • Expanded data collection or monitoring would provide basic ecosystem, social, and public health data to manage the Great Lakes system and to develop and test models and decision support tools. • New science and advanced technologies (for example, sensors and high-performance computing capability) would improve the understanding of critical threats, such as harmful algae blooms and high-water levels. Although there is significant scientific knowledge in specific areas or for specific topics, managers could use improved models and decision support tools, strengthened by extensive data collection and developed at multiple scales, to better inform decision making in the future. Enhanced coordination of agency efforts and associated data collection across data types (for example, prey fish populations and water levels) is needed to effectively manage the Great Lakes. This report highlights the data gaps; benefits of better, more structured coordination; and areas of concern specifically related to data collection/measurement and science efforts. It summarizes and analyzes stakeholder feedback and information from review of scientific literature. Finally, the report outlines steps necessary to create an integrated Great Lakes science plan.

Open-File Report

Inventory and review of existing PRISM hydrogeologic data for the Islamic Republic of Mauritania, Africa

The USGS entered into an agreement with the Mauritania Ministry of Mines and Industry to inventory and review the quality of information collected as part of the Project for Strengthening of the Institutions in the Mining Sector (PRISM). Whereas the PRISM program collected geophysical, geochemical, geological, satellite, and hydrogeologic information, this report focuses on an inventory and review of available hydrogeologic data provided to the USGS in multiple folders, files, and formats. Most of the information pertained to the hydrogeologic setting and the water budget of evaporation, evapotranspiration, and precipitation in the Choum-Zouerate area in northwestern Mauritania, and the country of Mauritania itself. Other information about the quantity and quality of groundwater was found in the relational Access database. In its present form, the limited hydrogeologic information was not amenable to conducting water balance, geostatistical, and localized numerical modeling studies in support of mineral exploration and development. Suggestions are provided to remedy many of the data's shortcomings, such as performing quality assurance on all SIPPE2 data tables and sending questionnaires to appropriate agencies, mining and other companies to populate the database with additional meteorology, hydrology, and groundwater data.

Open-File Report

Gas hydrates in sustainable chemistry

Gas hydrates have received considerable attention due to their important role in flow assurance for the oil and gas industry, their extensive natural occurrence on Earth and extraterrestrial planets, and their significant applications in sustainable technologies including but not limited to gas and energy storage, gas separation, and water desalination. Given not only their inherent structural flexibility depending on the type of guest gas molecules and formation conditions, but also the synthetic effects of a wide range of chemical additives on their properties, these variabilities could be exploited to optimise the role of gas hydrates. This includes increasing their industrial applications, understanding and utilising their role in Nature, identifying potential methods for safely extracting natural gases stored in naturally occurring hydrates within the Earth, and for developing green technologies. This review summarizes the different properties of gas hydrates as well as their formation and dissociation kinetics and then reviews the fast-growing literature reporting their role and applications in the aforementioned fields, mainly concentrating on advances during the last decade. Challenges, limitations, and future perspectives of each field are briefly discussed. The overall objective of this review is to provide readers with an extensive overview of gas hydrates that we hope will stimulate further work on this riveting field.

Chemical Society Reviews

Americans' attitudes toward wolves and wolf reintroduction: An annotated bibliography

During the period 1974-2000, 50 reports were published in peer-reviewed journals and in theses and dissertations concerning public altitudes and preferences toward wolves and their reinstatement into previously occupied habitat in the continental U.S. This publication provides annotated synopses of these 50 reports, arranged chronologically, but also cross-referenced by authors and by geographic area. In general, Americans favor reinstatement of wolf populations except for those people who perceive them to be a direct threat to their livelihood.

Information and Technology Report

Annual review 2016: Exploration review

This summary of international mineral exploration activities for the year 2016 draws upon information from industry sources, published literature, SNL Metals & Mining (SNL), an offering of S&P Global Market Intelligence (New York, NY), and specialists in the U.S. Geological Survey (USGS) National Minerals Information Center. Three types of information are reported and analyzed in this annual review of international exploration: 1) budgetary statistics expressed in U.S. dollars provided by SNL; 2) regional and site-specific exploration activities that took place in 2016 as compiled by the USGS and 3) regional events and legislation that affected exploration activities including economic, social and political conditions, which were derived from published sources and discussions with USGS and industry specialists. Commodity and regional compilations are presented in this summary. Because multiple sources were used to develop commodity and regional compilations, statistics may vary depending on the source and type of data that are being reported.

Mining Engineering

Integrating quality assurance in project work plans of the U.S. Geological Survey

The U.S. Geological Survey's objectives for including quality assurance procedures in a project work plan are to ensure that the quality of the data collected is defined and is appropriate for the objectives of the investigation. The data- quality information can be used in the interpre- tation of the data. A project work plan that includes quality assessment provides definable benefits such as clarity of expectations, a method for obtaining a set of data that is expected and has been proven valid, a documentation trail, products that are produced on time and that meet project objectives, and a decrease in work that is lost or redone. Project chiefs must prepare and can publish the work plan for scientific investigations. An expanded outline of a framework that can be used to prepare a project work plan that includes quality assurance is described in this report and contains the following topics: data-quality objectives; project organization and responsibilities; data collection; data processing; project reviews; data analysis; remedial actions; project progress reports and quality assurance reports to management.

Open-File Report

Kawah Ijen volcanic activity: A review

Kawah Ijen is a composite volcano located at the easternmost part of Java island in Indonesia and hosts the largest natural acidic lake in the world. We have gathered all available historical reports on Kawah Ijen’s activity since 1770 with the purpose of reviewing the temporal evolution of its activity. Most of these observations and studies have been conducted from a geochemical perspective and in punctuated scientific campaigns. Starting in 1991, the seismic activity and a set of volcanic lake parameters began to be weekly available. We present a database of those measurements that, combined with historical reports, allow us to review each eruption/unrest that occurred during the last two centuries. As of 2010, the volcanic activity is monitored by a new multi-disciplinary network, including digital seismic stations, and lake level and temperature measurements. This detailed monitoring provides an opportunity for better classifying seismic events and forecasting volcanic unrest at Kawah Ijen, but only with the understanding of the characteristics of this volcanic system gained from the historical review presented here.

Kawah Ijen

Annotated bibliography of scientific research on greater sage-grouse published since January 2015

The greater sage-grouse ( Centrocercus urophasianus ; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the U.S. Geological Survey (USGS) has reviewed and summarized the scientific literature published since January 1, 2015. To identify articles and reports published about GRSG, we first conducted a structured search of three reference databases (Web of Science, Scopus, and Google Scholar) using the search term “greater sage-grouse.” We refined the initial list of products by (1) removing duplicates, (2) excluding products that were not published as research or scientific review articles in peer-reviewed journals or as formal government technical reports, and (3) retaining only those products for which GRSG or their habitat was a research focus. We summarized the contents of each product by using a consistent structure (background, objectives, methods, location, findings, and implications) and assessed the content of each product relevant to a list of 31 management topics. These topics include GRSG biology and habitat characteristics along with potential management actions, land uses, and environmental factors related to GRSG management and conservation. We also noted which articles/reports created new geospatial data. The final search was conducted on January 6, 2018, and application of our criteria resulted in the inclusion of 169 published products (2 of these products were published corrections to journal articles). The management topics most commonly addressed were GRSG behavior or demographics and GRSG habitat selection or habitat characteristics at broad or site scales. Few products addressed captive breeding, recreation, wild horses and burros, and range management structures (including fences). We include in this annotated bibliography the full citation, product summary, and management topics addressed by each product. The online version of this bibliography ( https://apps.usgs.gov/gsgbib/index.php ) is searchable by topic and location and includes links to the original publications. A substantial body of literature has been compiled based on research explicitly related to the conservation, management, monitoring, and assessment of GRSG. These studies may inform planning and management actions that seek to balance conservation, economic, and social objectives and manage diverse resource uses and values across the western United States. The review process for this product included requesting input on each summary from one or more authors of the original peer-reviewed article or report and a formal review of the entire document by three independent reviewers and, subsequently, the USGS Bureau Approving Official. This process is consistent with USGS Fundamental Science Practices.

Open-File Report